RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15062
(375 letters)
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 188 bits (478), Expect = 2e-57
Identities = 113/382 (29%), Positives = 174/382 (45%), Gaps = 57/382 (14%)
Query: 3 PGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLN----EDIPIHPDSKSQGQLVDALVNF 58
P L G+ N GNTCY+NS+LQCL N P + +DI +G++ +
Sbjct: 13 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGII 72
Query: 59 MKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNG 118
MK +W+ ++ K + + +F G QQD+QE LL+L+ L+E+ ++
Sbjct: 73 MKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRY 132
Query: 119 STYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWE 178
+N + A H W+K + S+ +F GQ +S+V+C C + S +E F
Sbjct: 133 KEENNDHLDDFKA--AEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMY 190
Query: 179 LSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNG 238
LSLP+ TL +CL F
Sbjct: 191 LSLPLA-------------------------------------STSKCTLQDCLRLFSKE 213
Query: 239 ETLHN----TCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSN--FTQKVTSPIKFPREG 292
E L + C +C+ + D +K EI +LPPVL++ KRFS + + QK+ + + FP E
Sbjct: 214 EKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLEN 273
Query: 293 LDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSP 352
LD+ Y+ + Y+L +VSNH G GHYTAYC+ RW+ +DD VS
Sbjct: 274 LDLSQYVIGPK---NNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSD 329
Query: 353 VDAQTVESAEAEHGAYILVYQR 374
+ +V+S+ AYIL Y
Sbjct: 330 ISVSSVKSSA----AYILFYTS 347
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 178 bits (451), Expect = 1e-53
Identities = 121/380 (31%), Positives = 184/380 (48%), Gaps = 55/380 (14%)
Query: 4 GLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIP--IHPDSKSQGQLVDALVNFMKM 61
GL G+ N GNTC++NS+LQCLSNT R+ L +H S + LV+ ++
Sbjct: 2 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 61
Query: 62 MWSSG-NLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGST 120
+W+S N V++ ++ Y +F G QQDAQEFL +LL L+ E V + +
Sbjct: 62 IWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNP 121
Query: 121 YSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELS 180
+ R W K+ E S D+FVGQL+SS+ C++C STV++ FW+LS
Sbjct: 122 ENLDHLPDDEKGR--QMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 179
Query: 181 LPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGET 240
LP+ G TL +C+ F +
Sbjct: 180 LPIAKRGYPEV-----------------------------------TLMDCMRLFTKEDV 204
Query: 241 LHNTCQY----CKKQSDLVKLYEIQRLPPVLILWFKR--FSSNFTQKVTSPIKFPREGLD 294
L + C+ + +K + IQR P +L+L KR S T K+T+ + FP LD
Sbjct: 205 LDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLD 264
Query: 295 MEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVD 354
+ + S + + Y+L AVSNH G T + GHYTAYCR GTG W+ ++D+ V+P+
Sbjct: 265 LREFASEN----TNHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMS 319
Query: 355 AQTVESAEAEHGAYILVYQR 374
+ V +++ AY+L Y+
Sbjct: 320 SSQVRTSD----AYLLFYEL 335
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 169 bits (428), Expect = 1e-49
Identities = 67/392 (17%), Positives = 135/392 (34%), Gaps = 37/392 (9%)
Query: 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSK--SQGQLVDALVNFMKMMWS 64
G+ N GNTCY+N+ +QC+ + P ++ L + + S + AL + M
Sbjct: 6 GLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDK 65
Query: 65 SGNLVLNTKAILLALRSYTKKF------DGNQQQDAQEFLLYLLAALNEEAKVVPDQYNG 118
+ + + +L L +F QQDA E + ++ L ++ + + D
Sbjct: 66 TSSSI-PPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVK 124
Query: 119 STYSNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWE 178
T S+++ + + S+ F + ++++C+ + +
Sbjct: 125 ETDSSSA------------SAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQ 172
Query: 179 LSLPVPPGGGTLYECQLRSS-------VRCSNCKRTSTVYEIFWELSLPVPPGGGTLYEC 231
L L Y + +R + + LP +
Sbjct: 173 LQLSCFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFF 232
Query: 232 LNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFK-----RFSSNFTQKVTSPI 286
+ + D+ +L + ++ K N +
Sbjct: 233 YKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKK 292
Query: 287 KFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYD 346
P++ + E + A + YDL AV H G+++ GHY ++ +R+ W +D
Sbjct: 293 SSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRK-QDEWIKFD 351
Query: 347 DTVVSPVDAQTVESAEAE---HGAYILVYQRR 375
D VS V + + H AY+L+Y R
Sbjct: 352 DDKVSIVTPEDILRLSGGGDWHIAYVLLYGPR 383
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 153 bits (385), Expect = 3e-43
Identities = 68/396 (17%), Positives = 133/396 (33%), Gaps = 37/396 (9%)
Query: 7 GIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHP------DSKSQGQLVDALVNFMK 60
G N GNTCY+N+ LQ L R+++LN + D + Q+V + +
Sbjct: 8 GFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFE 67
Query: 61 MMWSSGNLVLNTKAILLALRSY-------TKKFDGNQQQDAQEFLLYLLAALNEEAKVVP 113
+ + + +L LR + +QQDA+E L +++
Sbjct: 68 NLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGDKF 127
Query: 114 DQYNGSTYSNT----------SSKQVGSFRALHYWEKFQT-TEASVFSDIFVGQLRSSVR 162
+ + T + K+ S L T + + ++
Sbjct: 128 SEDFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNEKIEKRSD 187
Query: 163 CSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVP 222
+ +V + L P L +R + S K++ + ++ + L V
Sbjct: 188 LTGANSIYSVEKKISRL----PK---FLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVA 240
Query: 223 PGGGTLYECLNKFFNGETLHNTCQYCKKQSDLVKLYEIQRLPPVLILWFKRFSSNFTQKV 282
Y E + +K+ ++ + ++ +++ +
Sbjct: 241 DMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNE 300
Query: 283 TSPIKFPREGLDMEYYISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREG-TGR 341
+ ++ E G Y+L V H G + GHY A+ R E +
Sbjct: 301 SEKDQWLEEYKKHFPPNLEKGEN--PSCVYNLIGVITHQGANSESGHYQAFIRDELDENK 358
Query: 342 WYLYDDTVVSPVDAQTVESAEAE---HGAYILVYQR 374
WY ++D VS V+ + +ES A IL+Y+
Sbjct: 359 WYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKG 394
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 117 bits (294), Expect = 9e-31
Identities = 73/389 (18%), Positives = 113/389 (29%), Gaps = 92/389 (23%)
Query: 2 SPGLNGIANAGNTCYINSVLQCLSNTPAFRNVLLNEDIPIHPDSKSQGQLVDALVNFMKM 61
G G+ N G TCY+NS+LQ L T R + S + AL
Sbjct: 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMP---TEGDDSSKSVPLALQRVFYE 59
Query: 62 MWSSGNLVLNTKAILLALRSYTKKFDGNQQQDAQEFLLYLLAALNEEAKVVPDQYNGSTY 121
+ S V TK + + + D Q D QE LL +
Sbjct: 60 LQHSDKPV-GTKKLTKSFGW--ETLDSFMQHDVQELCRVLLDNVE--------------- 101
Query: 122 SNTSSKQVGSFRALHYWEKFQTTEASVFSDIFVGQLRSSVRCSNCKRTSTVYEIFWELSL 181
+ T +F G++ S ++C S E ++
Sbjct: 102 ----------------NKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYY---- 141
Query: 182 PVPPGGGTLYECQLRSSVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECLNKFFNGETL 241
+ + V ++ + NK+
Sbjct: 142 -------DIQLSIKGKKNIFESFVDYVAVEQL----------------DGDNKY------ 172
Query: 242 HNTCQYCKKQSDLVKLYEIQRLPPV----LILWFKRFSSNFTQKVTSPIKFPREGLDMEY 297
+ K + LPPV L+ + ++ K+ +FP + E+
Sbjct: 173 ---DAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEF 229
Query: 298 YISASGRRVESRYTYDLCAVSNHIGKTALYGHYTAYCRREGTGRWYLYDDTVVSPVDAQT 357
+ Y L AV H G GHY Y +G G+W +DD VVS +
Sbjct: 230 LQK---TDPKDPANYILHAVLVHSGDNH-GGHYVVYLNPKGDGKWCKFDDDVVSRCTKEE 285
Query: 358 V-----------ESAEAEHGAYILVYQRR 375
S AY+LVY R
Sbjct: 286 AIEHNYGGHDDDLSVRHCTNAYMLVYIRE 314
>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus
[TaxId: 274]}
Length = 145
Score = 27.5 bits (61), Expect = 1.5
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 41 IHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKKFDGNQQQ 92
+ PD LV A +N K+M G L + A + +K +
Sbjct: 1 LQPDLVYGDVLVTAFIN--KIMR-DGKKNLAARIFYDACKIIQEKTGQEPLK 49
>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD
{Escherichia coli [TaxId: 562]}
Length = 431
Score = 27.7 bits (61), Expect = 2.9
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 78 ALRSYTKKFDGNQ 90
ALR Y+ KFD
Sbjct: 47 ALREYSAKFDKTT 59
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli
[TaxId: 562]}
Length = 150
Score = 26.0 bits (57), Expect = 5.4
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 40 PIHPDSKSQGQLVDALVNFMKMMWSSGNLVLNTKAILLALRSYTKK 85
I PD K +L+ VN +M G + AL + ++
Sbjct: 9 KILPDPKFGSELLAKFVN--ILMV-DGKKSTAESIVYSALETLAQR 51
>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 159
Score = 25.7 bits (56), Expect = 6.5
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 152 IFVGQLRS--SVRCSNCKRTSTVYEIFWELSLPVPPGGGTLYECQLRSSVRCSNCKRTS 208
+ +G LR + + V F +P G C+L + + C +S
Sbjct: 37 VPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPGADKGQFPNLCRLCAGTGENKCAFSS 95
>d1exta3 g.24.1.1 (A:116-172) Tumor necrosis factor (TNF) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 57
Score = 24.2 bits (52), Expect = 7.3
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 217 LSLPVPPGGGTLYECLNKFFNGETLHNTCQYCKKQSDLVKL 257
+ L T+ C FF E +C CKK + KL
Sbjct: 10 VHLSCQEKQNTVCTCHAGFFLRENECVSCSNCKKSLECTKL 50
>d1cq3a_ b.27.1.1 (A:) Soluble secreted chemokine inhibitor, VCCI
{Cowpox virus [TaxId: 10243]}
Length = 224
Score = 25.7 bits (56), Expect = 8.6
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 189 TLYECQLRSSVRCSNCKRTSTVY-------EIFWELSLPVPPGGGTLYE--CLNKFFNGE 239
+ +C++ +++CS ++ S + I + G T+ + C+ N E
Sbjct: 120 MIKDCEMSINIKCSEEEKDSNIKTHPVLGSNISHKKVSYEDIIGSTIVDTKCVK---NLE 176
Query: 240 TLHNTCQYCKKQSDL 254
CK+ S+L
Sbjct: 177 ISVRIGDMCKESSEL 191
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.411
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,413,964
Number of extensions: 66207
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 15
Length of query: 375
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 288
Effective length of database: 1,213,086
Effective search space: 349368768
Effective search space used: 349368768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)