BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15063
(417 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAW|C Chain C, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAX|A Chain A, Crystal Structure Of Mtsp1 (Matriptase)
pdb|2GV6|A Chain A, Crystal Structure Of Matriptase With Inhibitor Cj-730
pdb|2GV7|A Chain A, Structure Of Matriptase In Complex With Inhibitor Cj-672
Length = 241
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 9/157 (5%)
Query: 149 CDIDQ--LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ 206
C ID R + ++ LG HD +Q + R ++R++ H F+ F DIALL+
Sbjct: 43 CYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLE 102
Query: 207 LDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNAR 265
L++P + ++P+CLP F GK V GWG T + G + LQK E++V++
Sbjct: 103 LEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQY-GGTGALILQKGEIRVINQTT 161
Query: 266 CSTVIEESIG-----IGMLCAAPDETQGTCFVPVSPV 297
C ++ + I +G L D QG P+S V
Sbjct: 162 CENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSV 198
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 320 IILGGEADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCIM 363
++ G +AD GE+PWQV++ AL CG +L++ +++++AAHC +
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYI 45
>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine
pdb|3P8F|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Sfti-1
Length = 241
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 149 CDIDQ--LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ 206
C ID R + ++ LG HD +Q + R ++R++ H F+ F DIALL+
Sbjct: 43 CYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLE 102
Query: 207 LDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNAR 265
L++P + ++P+CLP F GK V GWG T + G + LQK E++V+
Sbjct: 103 LEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQY-GGTGALILQKGEIRVIQQTT 161
Query: 266 CSTVIEESIG-----IGMLCAAPDETQGTCFVPVSPV 297
C ++ + I +G L D QG P+S V
Sbjct: 162 CENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSV 198
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 320 IILGGEADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCIM 363
++ G +AD GE+PWQV++ AL CG +L++ +++++AAHC +
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYI 45
>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3BN9|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3NCL|A Chain A, Crystal Structure Of Mt-Sp1 Bound To Benzamidine
Phosphonate Inhibitor
pdb|3NPS|A Chain A, Crystal Structure Of Membrane-Type Serine Protease 1
(Mt-Sp1) In Complex With The Fab Inhibitor S4
pdb|3SO3|A Chain A, Structures Of Fab-Protease Complexes Reveal A Highly
Specific Non- Canonical Mechanism Of Inhibition
Length = 241
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 149 CDIDQ--LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQ 206
C ID R + ++ LG HD +Q + R ++R++ H F+ F DIALL+
Sbjct: 43 CYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLE 102
Query: 207 LDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNAR 265
L++P + ++P+ LP F GK V GWG T + G + LQK E++V++
Sbjct: 103 LEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQY-GGTGALILQKGEIRVINQTT 161
Query: 266 CSTVIEESIG-----IGMLCAAPDETQGTCFVPVSPV 297
C ++ + I +G L D QG P+S V
Sbjct: 162 CENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSV 198
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 320 IILGGEADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCIM 363
++ G +AD GE+PWQV++ AL CG +L++ +++++AAHC +
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYI 45
>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5F|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1P57|B Chain B, Extracellular Domain Of Human Hepsin
Length = 255
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 10/115 (8%)
Query: 180 VRRGVRRVLFHSHFHPFV------LSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI-GK 232
++ GV+ V++H + PF SNDIAL+ L P+PLT IQPVCLP G++ + GK
Sbjct: 68 LQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGK 127
Query: 233 RGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV--IEESIGIGMLCAAPDE 285
V GWG T + G+ + LQ+ V ++SN C+ I M CA E
Sbjct: 128 ICTVTGWGNTQY-YGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPE 181
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G + +G +PWQV++ DG CGG+LL+ +VLTAAHC
Sbjct: 1 IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCF 43
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 364 TGGPLTFEQDGYHV----LAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP E L GIVS+G TGCA+ P +YT+VS++ WI
Sbjct: 191 SGGPFVCEDSISRTPRWRLCGIVSWG-TGCALAQK-PGVYTKVSDFREWI 238
>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The
Transmembrane Serine Protease Hepsin With Covalently
Bound Preferred Substrate
Length = 372
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 8/92 (8%)
Query: 183 GVRRVLFHSHFHPFV------LSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI-GKRGH 235
GV+ V++H + PF SNDIAL+ L P+PLT IQPVCLP G++ + GK
Sbjct: 188 GVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICT 247
Query: 236 VVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS 267
V GWG T + G+ + LQ+ V ++SN C+
Sbjct: 248 VTGWGNTQY-YGQQAGVLQEARVPIISNDVCN 278
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 316 PRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
P RI+ G + +G +PWQV++ DG CGG+LL+ +VLTAAHC
Sbjct: 114 PVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCF 160
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 364 TGGPLTFEQDGYHV----LAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP E L GIVS+G TGCA+ P +YT+VS++ WI
Sbjct: 308 SGGPFVCEDSISRTPRWRLCGIVSWG-TGCALAQK-PGVYTKVSDFREWI 355
>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
pdb|3T2N|B Chain B, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
Length = 372
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 8/92 (8%)
Query: 183 GVRRVLFHSHFHPFV------LSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI-GKRGH 235
GV+ V++H + PF SNDIAL+ L P+PLT IQPVCLP G++ + GK
Sbjct: 188 GVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICT 247
Query: 236 VVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS 267
V GWG T + G+ + LQ+ V ++SN C+
Sbjct: 248 VTGWGNTQY-YGQQAGVLQEARVPIISNDVCN 278
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 316 PRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
P RI+ G + +G +PWQV++ DG CGG+LL+ +VLTAAHC
Sbjct: 114 PVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCF 160
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 364 TGGPLTFEQDGYHV----LAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP E L GIVS+G TGCA+ P +YT+VS++ WI
Sbjct: 308 SGGPFVCEDSISRTPRWRLCGIVSWG-TGCALAQK-PGVYTKVSDFREWI 355
>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|B Chain B, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|C Chain C, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|D Chain D, Structure Of A Human Enteropeptidase Light Chain Variant
Length = 235
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
R+ S+ LG H + L V R + ++ + H++ NDIA++ L+ V T
Sbjct: 46 RNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYT 105
Query: 215 GTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE- 272
IQP+ LP++ + F G+ + GWG + G + LQ+ +V +LSN RC + E
Sbjct: 106 DYIQPISLPEENQVFPPGRNCSIAGWGTVVY-QGTTADILQEADVPLLSNERCQQQMPEY 164
Query: 273 SIGIGMLCAAPDE 285
+I M+CA +E
Sbjct: 165 NITENMICAGYEE 177
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G +A G +PW V + D CG +L++ ++++AAHC+
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCV 43
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL +++ LAG+ S+G CA +P+ P +Y RVS + WI
Sbjct: 187 SGGPLMCQENNRWFLAGVTSFGYE-CA-LPNRPGVYARVSRFTEWIQ 231
>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii
From The Beetle Holotrichia Diomphalia
Length = 394
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 164 LHLGDHD-LTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCL 222
+ G+ D LT+ + R +R+V+ HS+F+P + ND+ALL LDRP+ I +CL
Sbjct: 193 IRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICL 252
Query: 223 PQKGESFIGKRGHVVGWGVTSF-PMGEPSPTLQKLEVKVLSNARCSTVIEES-IGIG--- 277
PQ+ + F GWG F S L+K+++ + +C + + +G+
Sbjct: 253 PQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVL 312
Query: 278 ---MLCAAPDETQGTC 290
+CA ++ + TC
Sbjct: 313 DQTFVCAGGEQGKDTC 328
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 325 EADIGEFPWQVAI--------ALDGMFFCGGALLNEHFVLTAAHCIMT 364
EA+ GEFPW VA+ + + CGG+L+ VLT AHC+ +
Sbjct: 136 EAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNS 183
>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To
Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane
Length = 235
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLT 214
R+ S+ LG H + L R + +++ + H++ +NDIA++ L+ V T
Sbjct: 46 RNMEPSKWKAVLGLHMASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYT 105
Query: 215 GTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE- 272
IQP+CLP++ + F G+ + GWG + G + LQ+ +V +LSN +C + E
Sbjct: 106 DYIQPICLPEENQVFPPGRICSIAGWGALIY-QGSTADVLQEADVPLLSNEKCQQQMPEY 164
Query: 273 SIGIGMLCA 281
+I M+CA
Sbjct: 165 NITENMVCA 173
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G ++ G +PW VA+ D CG +L++ ++++AAHC+
Sbjct: 1 IVGGSDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCV 43
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL +++ +LAG+ S+G CA +P+ P +Y RV + WI
Sbjct: 187 SGGPLMCQENNRWLLAGVTSFGYQ-CA-LPNRPGVYARVPRFTEWIQ 231
>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho
Length = 227
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG H++ + T V+R + H ++P SNDI LLQL+R T +QP
Sbjct: 48 SSINVTLGAHNIKEQEPTQQFI-PVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQP 106
Query: 220 VCLP-QKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
+ LP K + G+ V GWG T+ P+G+ S TLQ++++ V + +C + + +
Sbjct: 107 LRLPSNKAQVKPGQTCSVAGWGQTA-PLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTI 165
Query: 279 -LCAAPDETQGTCF 291
LC E + T F
Sbjct: 166 ELCVGDPEIKKTSF 179
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 320 IILGGEADIGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHC 361
II G EA P+ + + + CGG L+ + FVLTAAHC
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHC 45
>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B
pdb|1FQ3|B Chain B, Crystal Structure Of Human Granzyme B
Length = 227
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG H++ + T V+R + H ++P SNDI LLQL+R T +QP
Sbjct: 48 SSINVTLGAHNIKEQEPTQQFI-PVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQP 106
Query: 220 VCLP-QKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
+ LP K + G+ V GWG T+ P+G+ S TLQ++++ V + +C + + +
Sbjct: 107 LRLPSNKAQVKPGQTCSVAGWGQTA-PLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTI 165
Query: 279 -LCAAPDETQGTCF 291
LC E + T F
Sbjct: 166 ELCVGDPEIKKTSF 179
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 320 IILGGEADIGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHC 361
II G EA P+ + + + CGG L+ + FVLTAAHC
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIQDDFVLTAAHC 45
>pdb|1AUT|C Chain C, Human Activated Protein C
Length = 250
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
+L++ LG++DL + E + ++ V H ++ NDIALL L +P L+ TI P+
Sbjct: 49 KLLVRLGEYDLRRW-EKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPI 107
Query: 221 CLPQKG--ESFIGKRGH---VVGWGVTSFPMGEPSPT----LQKLEVKVLSNARCSTVIE 271
CLP G E + + G V GWG S E L +++ V+ + CS V+
Sbjct: 108 CLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMS 167
Query: 272 ESIGIGMLCA 281
+ MLCA
Sbjct: 168 NMVSENMLCA 177
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ G L G+VS+G GC ++ +Y +YT+VS Y+ WIH
Sbjct: 191 SGGPMVASFHGTWFLVGLVSWG-EGCGLLHNY-GVYTKVSRYLDWIH 235
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDGM--FFCGGALLNEHFVLTAAHCI 362
+I G G+ PWQV + LD CG L++ +VLTAAHC+
Sbjct: 1 LIDGKMTRRGDSPWQVVL-LDSKKKLACGAVLIHPSWVLTAAHCM 44
>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 240
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
+L++ LG++DL + E + ++ V H ++ NDIALL L +P L+ TI P+
Sbjct: 49 KLLVRLGEYDLRRW-EKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPI 107
Query: 221 CLPQKG--ESFIGKRGH---VVGWGVTSFPMGEPSPT----LQKLEVKVLSNARCSTVIE 271
CLP G E + + G V GWG S E L +++ V+ + CS V+
Sbjct: 108 CLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMS 167
Query: 272 ESIGIGMLCA 281
+ MLCA
Sbjct: 168 NMVSENMLCA 177
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ G L G+VS+G GC ++ +Y +YT+VS Y+ WIH
Sbjct: 191 SGGPMVASFHGTWFLVGLVSWG-EGCGLLHNY-GVYTKVSRYLDWIH 235
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDGM--FFCGGALLNEHFVLTAAHCI 362
+I G G+ PWQV + LD CG L++ +VLTAAHC+
Sbjct: 1 LIDGKMTRRGDSPWQVVL-LDSKKKLACGAVLIHPSWVLTAAHCM 44
>pdb|1PFX|C Chain C, Porcine Factor Ixa
pdb|1X7A|C Chain C, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 235
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 98/257 (38%), Gaps = 78/257 (30%)
Query: 158 PVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV--LSNDIALLQLDRPVPLTG 215
P ++ + G+++ T+ E + RR V R + H ++ V S+DIALL+LD P+ L
Sbjct: 45 PGVKITVVAGEYN-TEETEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNS 103
Query: 216 TIQPVCLPQKGESFIGKR---GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE 272
+ P+C+ K + I + G+V GWG F G + LQ L+V
Sbjct: 104 YVTPICIADKEYTNIFLKFGSGYVSGWGRV-FNRGRSATILQYLKV-------------- 148
Query: 273 SIGIGMLCAAPDETQGTCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFP 332
P + TC Y+ FH+G
Sbjct: 149 ----------PLVDRATCLRSTKFTIYSNMFCAGFHEG---------------------- 176
Query: 333 WQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIM 392
G C G +GGP E +G L GI+S+G CA+
Sbjct: 177 --------GKDSCQGD---------------SGGPHVTEVEGTSFLTGIISWGEE-CAVK 212
Query: 393 PSYPDLYTRVSEYIRWI 409
Y +YT+VS Y+ WI
Sbjct: 213 GKY-GIYTKVSRYVNWI 228
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 321 ILGGE-ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
I+GGE A G+FPWQV + FCGG+++NE +V+TAAHCI G +T Y+
Sbjct: 1 IVGGENAKPGQFPWQVLLNGKIDAFCGGSIINEKWVVTAAHCIEPGVKITVVAGEYN 57
>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 235
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 167 GDHDLTQLNETSHVRRGVRRVLFHSHFHPFV--LSNDIALLQLDRPVPLTGTIQPVCLPQ 224
G+H++ + T +R V R++ H +F+ + ++DIALL+LD P+ L + P+C+
Sbjct: 54 GEHNIEETEHTEQ-KRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIAD 112
Query: 225 KGESFIGKR---GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA 281
K + I + G+V GWG F G + LQ L V ++ A C + +I M CA
Sbjct: 113 KEYTNIFLKFGSGYVSGWGRV-FHKGRAALVLQYLRVPLVDRATCLRSTKFTITNNMFCA 171
Query: 282 APDE 285
E
Sbjct: 172 GFHE 175
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 321 ILGGE-ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
++GGE A G+FPWQV + FCGG+++NE +++TAAHC+ TG +T
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKIT 50
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP E +G L GI+S+G CA+ Y +YT+VS Y+ WI
Sbjct: 185 SGGPHVTEVEGTSFLTGIISWG-EECAMKGKY-GIYTKVSRYVNWI 228
>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant
pdb|2WPJ|S Chain S, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|S Chain S, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|S Chain S, Factor Ixa Superactive Triple Mutant, Edta-Soaked
Length = 235
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 167 GDHDLTQLNETSHVRRGVRRVLFHSHFHPFV--LSNDIALLQLDRPVPLTGTIQPVCLPQ 224
G+H++ + T +R V R++ H +F+ + ++DIALL+LD P+ L + P+C+
Sbjct: 54 GEHNIEETEHTEQ-KRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIAD 112
Query: 225 KGESFIGKR---GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA 281
K + I + G+V GWG F G + LQ L V ++ A C + +I M CA
Sbjct: 113 KEYTNIFLKFGSGYVSGWGRV-FHKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMFCA 171
Query: 282 APDE 285
E
Sbjct: 172 GFHE 175
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 321 ILGGE-ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
++GGE A G+FPWQV + FCGG+++NE +++TAAHC+ TG +T
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKIT 50
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP E +G L GI+S+G CA+ Y +YT+VS Y+ WI
Sbjct: 185 SGGPHVTEVEGTSFLTGIISWG-EECAMKGKY-GIYTKVSRYVNWI 228
>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|B Chain B, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|C Chain C, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|D Chain D, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species
Length = 223
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ +NE + +V+ H ++ L NDI L++L +P L +
Sbjct: 44 SRIQVRLGEHNIA-VNEGTEQFIDSVKVIMHPSYNSRNLDNDIMLIKLSKPASLNSYVST 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
V LP S G R V GWG S TL+ L++ +LS++ C++ I M
Sbjct: 103 VALPSSCASS-GTRCLVSGWGNLSGSSSNYPDTLRCLDLPILSSSSCNSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGFMEGGKDSCQGDSGGPV 181
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G E +Q ++ G FCGG+L++ +V++AAHC
Sbjct: 1 IVGGYECRKNSASYQASLQ-SGYHFCGGSLISSTWVVSAAHC 41
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L G+VS+G GCA + P +YT+V Y WI
Sbjct: 177 SGGPVVCNGQ----LQGVVSWGY-GCA-QRNKPGVYTKVCNYRSWI 216
>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant
Length = 235
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 167 GDHDLTQLNETSHVRRGVRRVLFHSHFHPFV--LSNDIALLQLDRPVPLTGTIQPVCLPQ 224
G+H++ + T +R V R++ H +++ + ++DIALL+LD P+ L + P+C+
Sbjct: 54 GEHNIEETEHTEQ-KRNVIRIIPHHNYNAAINTYNHDIALLELDEPLVLNSYVTPICIAD 112
Query: 225 KGESFIGKR---GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA 281
K + I + G+V GWG F G + LQ L V ++ A C + +I M CA
Sbjct: 113 KEYTNIFLKFGSGYVSGWGRV-FHKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMFCA 171
Query: 282 APDE 285
E
Sbjct: 172 GFHE 175
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 321 ILGGE-ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
++GGE A G+FPWQV + FCGG+++NE +++TAAHC+ TG +T
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKIT 50
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP E +G L GI+S+G CA+ Y +YT+VS Y+ WI
Sbjct: 185 SGGPHVTEVEGTSFLTGIISWG-EECAMKGKY-GIYTKVSRYVNWI 228
>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A
Tripeptide Phosphonate Inhibitor
Length = 253
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
PVCLP + + G +G V GWG G+PS LQ + + ++ C I
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWGQPS-VLQVVNLPIVERPVCKDSTRIRI 175
Query: 275 GIGMLCAA--PDE 285
M CA PDE
Sbjct: 176 TDNMFCAGYKPDE 188
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|A Chain A, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|C Chain C, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|A Chain A, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 235
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 167 GDHDLTQLNETSHVRRGVRRVLFHSHFHPFV--LSNDIALLQLDRPVPLTGTIQPVCLPQ 224
G+H++ + T +R V R++ H +++ + ++DIALL+LD P+ L + P+C+
Sbjct: 54 GEHNIEETEHTEQ-KRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIAD 112
Query: 225 KGESFIGKR---GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA 281
K + I + G+V GWG F G + LQ L V ++ A C + +I M CA
Sbjct: 113 KEYTNIFLKFGSGYVSGWGRV-FHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCA 171
Query: 282 APDE 285
E
Sbjct: 172 GFHE 175
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 321 ILGGE-ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
++GGE A G+FPWQV + FCGG+++NE +++TAAHC+ TG +T
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKIT 50
>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 235
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 167 GDHDLTQLNETSHVRRGVRRVLFHSHFHPFV--LSNDIALLQLDRPVPLTGTIQPVCLPQ 224
G+H++ + T +R V R++ H +++ + ++DIALL+LD P+ L + P+C+
Sbjct: 54 GEHNIEETEHTEQ-KRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIAD 112
Query: 225 KGESFIGKR---GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA 281
K + I + G+V GWG F G + LQ L V ++ A C + +I M CA
Sbjct: 113 KEYTNIFLKFGSGYVSGWGRV-FHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCA 171
Query: 282 APDE 285
E
Sbjct: 172 GFHE 175
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 321 ILGGE-ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
++GGE A G+FPWQV + FCGG+++NE +++TAAHC+ TG +T
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKIT 50
>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M
pdb|2ZGH|A Chain A, Crystal Structure Of Active Granzyme M Bound To Its
Product
pdb|2ZKS|A Chain A, Structural Insights Into The Proteolytic Machinery Of
Apoptosis- Inducing Granzyme M
Length = 240
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 159 VSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPF-VLSNDIALLQLDRPVPLTGTI 217
+++L L LG H L T H++ ++ H + P L ND+ALLQLD V + TI
Sbjct: 47 MAQLRLVLGLHTLDSPGLTFHIKAAIQ----HPRYKPVPALENDLALLQLDGKVKPSRTI 102
Query: 218 QPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC--STVIEESI 274
+P+ LP K + G R + GWG+T G S L++L+++VL C S S+
Sbjct: 103 RPLALPSKRQVVAAGTRCSMAGWGLT-HQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSL 161
Query: 275 GIGMLCAAPD-ETQGTC 290
M+C A D + Q C
Sbjct: 162 SPSMVCLAADSKDQAPC 178
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
II G E P+ ++ +G CGG L++ +VLTAAHC+
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCL 43
>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin
pdb|1AZZ|B Chain B, Fiddler Crab Collagenase Complexed To Ecotin
Length = 226
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
LG H++ + +E + V H +++ FV+SNDIA+++L PV LT I V LP
Sbjct: 53 LGAHNIRE-DEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPST 111
Query: 226 GESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE 285
+ +G GWG+ S S L++++V ++SNA C V + G +C
Sbjct: 112 -DVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVY-GIVTDGNICIDSTG 169
Query: 286 TQGTC 290
+GTC
Sbjct: 170 GKGTC 174
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGG 366
I+ G EA +P Q A+ +D M+FCGG+L++ ++LTAAHC+ G
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAG 47
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVT-GCAIMPSYPDLYTRVSEYIRWIHVNAIVT 416
+GGPL + Y GI S+G GC YPD +TRV+ ++ WI +T
Sbjct: 178 SGGPLNYNGLTY----GITSFGAAAGCE--AGYPDAFTRVTYFLDWIQTQTGIT 225
>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A
Second Crystal Form
Length = 237
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ ++ E S RV+ H ++ + + NDI L++L +P L +QP
Sbjct: 59 SRVEVRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQP 117
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
V LP G V GWG T + S LQ L + +LS + C+ I M
Sbjct: 118 VALPTSCAP-AGTMCTVSGWGNTMSSTAD-SNKLQCLNIPILSYSDCNNSYPGMITNAMF 175
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 176 CAGYLEGGKDSCQGDSGGPV 195
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 310 GTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
G + +I+ G E QV++ G FCGG+L+NE++V++AAHC
Sbjct: 6 GAAFATEDDKIVGGYECKAYSQAHQVSLN-SGYHFCGGSLVNENWVVSAAHC 56
>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
pdb|1DLK|D Chain D, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
Length = 230
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVT 242
+ +V +S ++ ++NDI LL+L + T+ VCLP + F G GWG+T
Sbjct: 70 IAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLT 129
Query: 243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA 281
+ LQ+ + +LSN C I M+CA
Sbjct: 130 RYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICA 168
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 320 IILGGEADIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHCIMT 364
I+ G EA G +PWQV++ G FCGG+L+NE++V+TAAHC +T
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVT 46
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL +++G L GIVS+G + C+ S P +Y RV+ + W+
Sbjct: 180 SGGPLVCKKNGAWTLVGIVSWGSSTCST--STPGVYARVTALVNWVQ 224
>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTK|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTL|M Chain M, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTM|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
Length = 242
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ ++ E S RV+ H ++ + + NDI L++L +P L +QP
Sbjct: 64 SRVEVRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQP 122
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
V LP G V GWG T + S LQ L + +LS + C+ I M
Sbjct: 123 VALPTSCAP-AGTMCTVSGWGNTMSSTAD-SNKLQCLNIPILSYSDCNNSYPGMITNAMF 180
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 181 CAGYLEGGKDSCQGDSGGPV 200
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 310 GTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
G + +I+ G E P QV++ G FCGG+L+NE++V++AAHC
Sbjct: 11 GAAFATEDDKIVGGYECKPYSQPHQVSLN-SGYHFCGGSLVNENWVVSAAHC 61
>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex
With Bovine Pancreatic Trypsin Inhibitor
pdb|2STA|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (Cucurbita Maxima Trypsin Inhibitor I)
pdb|2STB|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (cucurbita Pepo Trypsin Inhibitor Ii)
Length = 222
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ ++ E S RV+ H ++ + + NDI L++L +P L +QP
Sbjct: 44 SRVEVRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQP 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
V LP G V GWG T + S LQ L + +LS + C+ I M
Sbjct: 103 VALPTSCAP-AGTMCTVSGWGNTMSSTAD-SNKLQCLNIPILSYSDCNNSYPGMITNAMF 160
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 161 CAGYLEGGKDSCQGDSGGPV 180
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G E P QV++ G FCGG+L+NE++V++AAHC
Sbjct: 1 IVGGYECKPYSQPHQVSLN-SGYHFCGGSLVNENWVVSAAHC 41
>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed
With A Peptide Inhibitor, Sgti
Length = 237
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S L + G+ D++ +NE S V +++ H +F +L NDI+LL+L + + P
Sbjct: 56 SGLQIVAGELDMS-VNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAP 114
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC-STVIEESIGIGM 278
+ LP++G + G V GWG TS G LQK+ V ++S+ C + + I M
Sbjct: 115 IALPEQGHTATGDV-IVTGWGTTS-EGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSM 172
Query: 279 LCAA-PDETQGTC 290
+CA P+ + +C
Sbjct: 173 ICAGVPEGGKDSC 185
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAI 414
+GGPL G LAGIVS+G GCA P YP +YT VS ++ WI NA+
Sbjct: 189 SGGPLAASDTGSTYLAGIVSWGY-GCA-RPGYPGVYTEVSYHVDWIKANAV 237
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 320 IILGGEADIGEFPWQVAIALD----GMFFCGGALLNEHFVLTAAHCI 362
I+ G +A +GEFP+Q++ FCG ++ NE++ +TA HC+
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCV 47
>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon
Length = 222
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ ++ E S RV+ H ++ + + NDI L++L +P L +QP
Sbjct: 44 SRVEVRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQP 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
V LP G V GWG T + S LQ L + +LS + C+ I M
Sbjct: 103 VALPTSCAP-AGTMCTVSGWGNTMSSTAD-SNKLQCLNIPILSYSDCNNSYPGMITNAMF 160
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 161 CAGYLEGGKDSCQGDSGGPV 180
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G E P QV++ G FCGG+L+NE++V++AAHC
Sbjct: 1 IVGGYECKAYSQPHQVSLN-SGYHFCGGSLVNENWVVSAAHC 41
>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
pdb|2ZPR|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
Length = 222
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ ++ E S RV+ H ++ + + NDI L++L +P L +QP
Sbjct: 44 SRVAVRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQP 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
V LP G V GWG T + LQ L + +LS + C+ I M
Sbjct: 103 VALPSSCAP-AGTMCTVSGWGNTMSSTAD-GDKLQCLNIPILSYSDCNNSYPGMITNAMF 160
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 161 CAGYLEGGKDSCQGDSGGPV 180
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G E P QV++ G FCGG+L+NE++V++AAHC
Sbjct: 1 IVGGYECKAYSQPHQVSLN-SGYHFCGGSLVNENWVVSAAHC 41
>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between
Salmon And Bovine Trypsins
Length = 222
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ ++ E S RV+ H ++ + + NDI L++L +P L +QP
Sbjct: 44 SRVEVRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQP 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
V LP G V GWG T + S LQ L + +LS + C+ I M
Sbjct: 103 VALPTSCAP-AGTMCTVSGWGNTMSSTAD-SDKLQCLNIPILSYSDCNDSYPGMITNAMF 160
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 161 CAGYLEGGKDSCQGDSGGPV 180
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 19/21 (90%)
Query: 341 GMFFCGGALLNEHFVLTAAHC 361
G FCGG+L+NE++V++AAHC
Sbjct: 21 GYHFCGGSLVNENWVVSAAHC 41
>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|2CGA|B Chain B, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|1ACB|E Chain E, Crystal And Molecular Structure Of The Bovine
Alpha-Chymotrypsin-Eglin C Complex At 2.0 Angstroms
Resolution
pdb|1CGI|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1CGJ|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1EX3|A Chain A, Crystal Structure Of Bovine Chymotrypsinogen A
(Tetragonal)
pdb|1GL1|A Chain A, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|B Chain B, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|C Chain C, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL0|E Chain E, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-D2v, An Inhibitor From The Insect Locusta
Migratoria
pdb|1K2I|1 Chain 1, Crystal Structure Of Gamma-Chymotrypsin In Complex With 7-
Hydroxycoumarin
pdb|1P2M|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2M|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OXG|A Chain A, Crystal Structure Of A Complex Formed Between Organic
Solvent Treated Bovine Alpha-Chymotrypsin And Its
Autocatalytically Produced Highly Potent 14-Residue
Peptide At 2.2 Resolution
pdb|1T7C|A Chain A, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T7C|C Chain C, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|A Chain A, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|C Chain C, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|A Chain A, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|C Chain C, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|A Chain A, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|C Chain C, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|A Chain A, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|C Chain C, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1CHG|A Chain A, Chymotrypsinogen,2.5 Angstroms Crystal Structure,
Comparison With Alpha-Chymotrypsin,And Implications For
Zymogen Activation
pdb|1GCD|A Chain A, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2Y6T|A Chain A, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|B Chain B, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|C Chain C, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|D Chain D, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|3T62|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|B Chain B, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|C Chain C, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
Length = 245
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVT 242
+ +V +S ++ ++NDI LL+L + T+ VCLP + F G GWG+T
Sbjct: 85 IAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLT 144
Query: 243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA 281
+ LQ+ + +LSN C I M+CA
Sbjct: 145 RYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICA 183
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 319 RIILGGEADIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHCIMT 364
RI+ G EA G +PWQV++ G FCGG+L+NE++V+TAAHC +T
Sbjct: 15 RIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVT 61
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL +++G L GIVS+G + C+ S P +Y RV+ + W+
Sbjct: 195 SGGPLVCKKNGAWTLVGIVSWGSSTCST--STPGVYARVTALVNWVQ 239
>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
pdb|2ZPQ|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
Length = 222
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ ++ E S RV+ H ++ + + NDI L++L +P L +QP
Sbjct: 44 SRVEVRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQP 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
V LP G V GWG T + + LQ L + +LS + C+ I M
Sbjct: 103 VALPSSCAP-AGTMCTVSGWGNTMSSTADKN-KLQCLNIPILSYSDCNNSYPGMITNAMF 160
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 161 CAGYLEGGKDSCQGDSGGPV 180
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G E P QV++ G FCGG+L+NE++V++AAHC
Sbjct: 1 IVGGYECKAYSQPHQVSLN-SGYHFCGGSLVNENWVVSAAHC 41
>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of
Prophenoloxidase Activating Factor-I In A Zymogen Form
Length = 278
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 201 DIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVK 259
DIAL++L+R V T I+PVCLPQ E +G+R VVGWG T G+ S QKL V
Sbjct: 133 DIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTE--TGQYSTIKQKLAVP 190
Query: 260 VLSNARCSTVIEES---IGIGMLCAAPDETQGTC 290
V+ +C+ + + LCA ++ + +C
Sbjct: 191 VVHAEQCAKTFGAAGVRVRSSQLCAGGEKAKDSC 224
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 313 YRQPRRRIILGGEADIGEFPWQVAIALDG-----MFFCGGALLNEHFVLTAAHCI 362
Y+ +I+ G + EFPW I F CGG+L+N +++TAAHC+
Sbjct: 16 YQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCV 70
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 364 TGGPLTFEQDGYHV-LAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN 412
+GGPL E+ L G+VS+G T C +P +YT+V +Y WI N
Sbjct: 228 SGGPLLAERANQQFFLEGLVSFGAT-CG-TEGWPGIYTKVGKYRDWIEGN 275
>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal
Synthesized Substrate
Length = 240
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 159 VSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPF-VLSNDIALLQLDRPVPLTGTI 217
+++L L LG H L T H++ ++ H + P L N++ALLQLD V + TI
Sbjct: 47 MAQLRLVLGLHTLDSPGLTFHIKAAIQ----HPRYKPVPALENNLALLQLDGKVKPSRTI 102
Query: 218 QPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC--STVIEESI 274
+P+ LP K + G R + GWG+T G S L++L+++VL C S S+
Sbjct: 103 RPLALPSKRQVVAAGTRCSMAGWGLT-HQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSL 161
Query: 275 GIGMLCAAPD-ETQGTC 290
M+C A D + Q C
Sbjct: 162 SPSMVCLAADSKDQAPC 178
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
II G E P+ ++ +G CGG L++ +VLTAAHC+
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCL 43
>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum
Salmon
Length = 222
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ LG+H++ ++ E S RV+ H ++ + + NDI L++L +P L +QPV LP
Sbjct: 48 VRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP 106
Query: 224 QKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCA-- 281
G V GWG T + + LQ L + +LS + C+ I M CA
Sbjct: 107 SSCAP-AGTMCTVSGWGNTMSSTADKN-KLQCLNIPILSYSDCNNSYPGMITNAMFCAGY 164
Query: 282 ---APDETQGTCFVPV 294
D QG PV
Sbjct: 165 LEGGKDSCQGDSGGPV 180
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT 364
I+ G E P QV++ G FCGG+L+NE++V++AAHC T
Sbjct: 1 IVGGYECKAYSQPHQVSLN-SGYHFCGGSLVNENWVVSAAHCYKT 44
>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
Length = 308
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 12/145 (8%)
Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH-PFVLSNDIALLQLDRPVPL 213
++ V +L++ +G H T+ + ++ H ++ L DIALL+L RP+ L
Sbjct: 101 KNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIEL 160
Query: 214 TGTIQPVCLPQKGES----FIGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSN 263
+ I PVCLP K + G +G V GWG TS +PS LQ + + ++
Sbjct: 161 SDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPS-VLQVVNLPLVER 219
Query: 264 ARCSTVIEESIGIGMLCAAPDETQG 288
C I M CA +G
Sbjct: 220 PVCKASTRIRITDNMFCAGYKPGEG 244
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
RI+ G +A++G PWQV + CG +L+++ +VLTAAHC++
Sbjct: 49 RIVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 95
>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease
Inhibitor Ecotin
Length = 256
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 12/145 (8%)
Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH-PFVLSNDIALLQLDRPVPL 213
++ V +L++ +G H T+ + ++ H ++ L DIALL+L RP+ L
Sbjct: 52 KNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIEL 111
Query: 214 TGTIQPVCLPQKGES----FIGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSN 263
+ I PVCLP K + G +G V GWG TS +PS LQ + + ++
Sbjct: 112 SDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPS-VLQVVNLPLVER 170
Query: 264 ARCSTVIEESIGIGMLCAAPDETQG 288
C I M CA +G
Sbjct: 171 PVCKASTRIRITDNMFCAGYKPGEG 195
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A++G PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1BBR|N Chain N, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1ETR|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETS|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETT|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1HRT|H Chain H, The Structure Of A Complex Of Bovine Alpha-Thrombin And
Recombinant Hirudin At 2.8 Angstroms Resolution
pdb|1TBR|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBR|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1UCY|K Chain K, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1UCY|N Chain N, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|H Chain H, Thrombin:hirudin 51-65 Complex
pdb|1MKW|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1TOC|B Chain B, Structure Of Serine Proteinase
pdb|1TOC|D Chain D, Structure Of Serine Proteinase
pdb|1TOC|F Chain F, Structure Of Serine Proteinase
pdb|1TOC|H Chain H, Structure Of Serine Proteinase
pdb|1UVT|H Chain H, Bovine Thrombin--Bm14.1248 Complex
pdb|1UVU|H Chain H, Bovine Thrombin--Bm12.1700 Complex
pdb|1YCP|H Chain H, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
pdb|1A0H|B Chain B, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1A0H|E Chain E, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1AVG|H Chain H, Thrombin Inhibitor From Triatoma Pallidipennis
pdb|2A1D|B Chain B, Staphylocoagulase Bound To Bovine Thrombin
pdb|2A1D|F Chain F, Staphylocoagulase Bound To Bovine Thrombin
pdb|2ODY|B Chain B, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|2ODY|D Chain D, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|3PMA|B Chain B, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMA|D Chain D, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMB|B Chain B, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
pdb|3PMB|D Chain D, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
Length = 259
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 12/145 (8%)
Query: 155 RDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH-PFVLSNDIALLQLDRPVPL 213
++ V +L++ +G H T+ + ++ H ++ L DIALL+L RP+ L
Sbjct: 52 KNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIEL 111
Query: 214 TGTIQPVCLPQKGES----FIGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSN 263
+ I PVCLP K + G +G V GWG TS +PS LQ + + ++
Sbjct: 112 SDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPS-VLQVVNLPLVER 170
Query: 264 ARCSTVIEESIGIGMLCAAPDETQG 288
C I M CA +G
Sbjct: 171 PVCKASTRIRITDNMFCAGYKPGEG 195
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A++G PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
pdb|1BTH|K Chain K, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 259
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG T+ G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTTNVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free
Form
Length = 250
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 11/133 (8%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
PVCLP + + G +G V GWG G+PS LQ + + ++ C I
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLK---GQPS-VLQVVNLPIVERPVCKDSTRIRI 172
Query: 275 GIGMLCAA--PDE 285
M CA PDE
Sbjct: 173 TDNMFCAGYKPDE 185
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small
Molecules Occupying The S1 Pocket
Length = 252
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
PVCLP + + G +G V GWG G+PS LQ + + ++ C I
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLK-EKGQPS-VLQVVNLPIVERPVCKDSTRIRI 174
Query: 275 GIGMLCAA--PDE 285
M CA PDE
Sbjct: 175 TDNMFCAGYKPDE 187
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1DPO|A Chain A, Structure Of Rat Trypsin
Length = 223
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+NDI L++L PV L +
Sbjct: 44 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
V LP G + + GWG T S + EP LQ L+ +L A C + +
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
+ +G L D QG C PV
Sbjct: 161 VCVGFLEGGKDSCQGDCGGPV 181
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL
Sbjct: 1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 178 GGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 217
>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A
Tripeptide Phosphonate Inhibitor
Length = 260
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
PVCLP + + G +G V GWG G+PS LQ + + ++ C I
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLK-ETGQPS-VLQVVNLPIVERPVCKDSTRIRI 174
Query: 275 GIGMLCAA--PDE 285
M CA PDE
Sbjct: 175 TDNMFCAGYKPDE 187
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of
The Complex Formed Between Porcine Beta-trypsin And
Mcti-a, A Trypsin Inhibitor Of Squash Family
pdb|1QQU|A Chain A, Crystal Structure Of Porcine Beta Trypsin With Bound
Acetate Ion
pdb|1FMG|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.04%
Polydocanol
pdb|1FN6|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.1%
Polydocanol
pdb|1FNI|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.01%
Polydocanol
Length = 223
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F+ L NDI L++L P L +
Sbjct: 44 SRIQVRLGEHNIDVL-EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST-----VIEESI 274
V LP+ + G + GWG T LQ L+ VLSN+ C + + I
Sbjct: 103 VSLPRSCAA-AGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSNSSCKSSYPGQITGNMI 161
Query: 275 GIGMLCAAPDETQGTCFVPV 294
+G L D QG PV
Sbjct: 162 CVGFLQGGKDSCQGDSGGPV 181
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G P+QV++ G FCGG+L+N +V++AAHC
Sbjct: 1 IVGGYTCAANSIPYQVSLN-SGSHFCGGSLINSQWVVSAAHC 41
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ L GIVS+G GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGQ----LQGIVSWGY-GCA-QKNKPGVYTKVCNYVNWIQ 217
>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
pdb|2XXL|B Chain B, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
Length = 408
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 180 VRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP------QKGESFIGKR 233
V G+ + L H + + +DIALL+L+R VP I+P+CLP +K E
Sbjct: 202 VNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQI--ST 259
Query: 234 GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTC 290
V GWG T G S L + V + + CS ++ + LC + Q +C
Sbjct: 260 YFVTGWGTTE--NGSSSDVLLQANVPLQPRSACSQAYRRAVPLSQLCVGGGDLQDSC 314
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 318 RRIILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCI 362
+R+ G E + PW + + F CGGA+++E ++LTAAHC+
Sbjct: 117 QRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCV 165
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 380 GIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
GIVS GV C + S P LYT V EY++WI
Sbjct: 340 GIVSQGVVTCGQI-SLPGLYTNVGEYVQWI 368
>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par3
pdb|2PV9|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par4
Length = 258
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIALL+L +PVP + I
Sbjct: 57 NDLLVRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIH 116
Query: 219 PVCLPQKG--ESFI--GKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP K S + G +G V GWG T+ +PS LQ + + ++ C
Sbjct: 117 PVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPS-VLQVVNLPIVERPVCKA 175
Query: 269 VIEESIGIGMLCAA 282
I M CA
Sbjct: 176 STRIRITDNMFCAG 189
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+ G PWQV + CG +L+++ +VLTAAHCI+
Sbjct: 1 IVEGWDAEKGIAPWQVMLFRKSPQELLCGASLISDRWVLTAAHCIL 46
>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine
Thrombin
Length = 259
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIALL+L +PVP + I
Sbjct: 57 NDLLVRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIH 116
Query: 219 PVCLPQKG--ESFI--GKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP K S + G +G V GWG T+ +PS LQ + + ++ C
Sbjct: 117 PVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPS-VLQVVNLPIVERPVCKA 175
Query: 269 VIEESIGIGMLCAA 282
I M CA
Sbjct: 176 STRIRITDNMFCAG 189
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+ G PWQV + CG +L+++ +VLTAAHCI+
Sbjct: 1 IVEGWDAEKGIAPWQVMLFRKSPQELLCGASLISDRWVLTAAHCIL 46
>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|D Chain D, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|F Chain F, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3HK3|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(ONE Molecule In The Asymmetric Unit)
pdb|3HK6|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HK6|D Chain D, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HKI|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
pdb|3HKI|E Chain E, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
Length = 258
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIALL+L +PVP + I
Sbjct: 57 NDLLVRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIH 116
Query: 219 PVCLPQKG--ESFI--GKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP K S + G +G V GWG T+ +PS LQ + + ++ C
Sbjct: 117 PVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPS-VLQVVNLPIVERPVCKA 175
Query: 269 VIEESIGIGMLCAA 282
I M CA
Sbjct: 176 STRIRITDNMFCAG 189
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+ G PWQV + CG +L+++ +VLTAAHCI+
Sbjct: 1 IVEGWDAEKGIAPWQVMLFRKSPQELLCGASLISDRWVLTAAHCIL 46
>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon
Length = 220
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ ++ E S RV+ H ++ + + NDI L++L + L +QP
Sbjct: 44 SRVEVRLGEHNI-KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKSATLNTYVQP 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
V LP G V GWG T + + LQ L + +LS + C+ I M
Sbjct: 103 VALPSSCAP-AGTMCTVSGWGNTMSSTADKN-KLQCLNIPILSYSDCNNSYPGMITNAMF 160
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 161 CAGYLEGGKDSCQGDSGGPV 180
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G E P QV++ G FCGG+L+NE++V++AAHC
Sbjct: 1 IVGGYECKAYSQPHQVSLN-SGYHFCGGSLVNENWVVSAAHC 41
>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165
Length = 250
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTAYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
PVCLP + + G +G V GWG G+PS LQ + + ++ C I
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLK-ETGQPS-VLQVVNLPIVERPVCKDSTRIRI 174
Query: 275 GIGMLCAA--PDE 285
M CA PDE
Sbjct: 175 TDNMFCAGYKPDE 187
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1PQ5|A Chain A, Trypsin At Ph 5, 0.85 A
pdb|1PQ7|A Chain A, Trypsin At 0.8 A, Ph5 BORAX
pdb|1PQ8|A Chain A, Trypsin At Ph 4 At Atomic Resolution
pdb|2G51|A Chain A, Anomalous Substructure Of Trypsin (P1)
pdb|2G52|A Chain A, Anomalous Substructure Of Trypsin (P21)
pdb|1TRY|A Chain A, Structure Of Inhibited Trypsin From Fusarium Oxysporum At
1.55 Angstroms
pdb|2VU8|E Chain E, Crystal Structure Of An Insect Inhibitor With A Fungal
Trypsin
Length = 224
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G A G+FP+ V+I+ +G +CGG+LLN + VLTAAHC+ + Q G+ + A
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVS-----GYAQSGFQIRA 55
Query: 380 GIVS 383
G +S
Sbjct: 56 GSLS 59
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 48/126 (38%), Gaps = 9/126 (7%)
Query: 178 SHVRRGVRRVLFHSHFHPFVL--SNDIALLQLDRPVPLTGTIQPVCLPQKG-ESFIGKRG 234
S G+ L HP +ND+A+L+L +P G I L G + G
Sbjct: 59 SRTSGGITSSLSSVRVHPSYSGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSA 118
Query: 235 HVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC------STVIEESIGIGMLCAAPDETQG 288
V GWG TS L K+ V ++S A C S + + G+ D QG
Sbjct: 119 TVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQG 178
Query: 289 TCFVPV 294
P+
Sbjct: 179 DSGGPI 184
>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution
pdb|1PQA|A Chain A, Trypsin With Pmsf At Atomic Resolution
Length = 224
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G A G+FP+ V+I+ +G +CGG+LLN + VLTAAHC+ + Q G+ + A
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVS-----GYAQSGFQIRA 55
Query: 380 GIVS 383
G +S
Sbjct: 56 GSLS 59
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 48/126 (38%), Gaps = 9/126 (7%)
Query: 178 SHVRRGVRRVLFHSHFHPFVL--SNDIALLQLDRPVPLTGTIQPVCLPQKG-ESFIGKRG 234
S G+ L HP +ND+A+L+L +P G I L G + G
Sbjct: 59 SRTSGGITSSLSSVRVHPSYSGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSA 118
Query: 235 HVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC------STVIEESIGIGMLCAAPDETQG 288
V GWG TS L K+ V ++S A C S + + G+ D QG
Sbjct: 119 TVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQG 178
Query: 289 TCFVPV 294
P+
Sbjct: 179 DXGGPI 184
>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex
Length = 308
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 106 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 165
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 166 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 224
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 225 STRIRITDNMFCAGYKPDE 243
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
RI+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 49 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 95
>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
pdb|1RD3|D Chain D, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
Length = 259
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To
Ppack
Length = 259
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN
Thrombin (Space Group P2(1)2(1)2(1))
pdb|3HKJ|B Chain B, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
pdb|3HKJ|E Chain E, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
Length = 259
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ0|D Chain D, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ7|B Chain B, Crystal Structure Of The Anticoagulant Thrombin Mutant
W215aE217A Bound To Ppack
Length = 257
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent,
Benzamidine-Based Synthetic Inhibitor
pdb|1D3D|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzothiophene Inhibitor 4
pdb|1EB1|H Chain H, Complex Structure Of Human Thrombin With N-Methyl-Arginine
Inhibitor
pdb|1GHV|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1YPE|H Chain H, Thrombin Inhibitor Complex
pdb|1YPG|H Chain H, Thrombin Inhibitor Complex
pdb|1YPJ|H Chain H, Thrombin Inhibitor Complex
pdb|1YPK|H Chain H, Thrombin Inhibitor Complex
pdb|1YPL|H Chain H, X-Ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1008
pdb|1YPM|H Chain H, X-ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1014
pdb|2ANM|H Chain H, Ternary Complex Of An Orally Active Thrombin Inhibitor
With Human Thrombin And A C-Terminal Hirudin Derived
Exo-Sit Inhibitor
pdb|2CF9|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|1GHX|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GHY|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2CF8|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|2CN0|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Inhibitor
pdb|3BIU|H Chain H, Human Thrombin-In Complex With Ub-Thr10
pdb|3BIV|H Chain H, Human Thrombin-In Complex With Ub-Thr11
pdb|2V3H|H Chain H, Thrombin With 3-Cycle No F
pdb|2V3O|H Chain H, Thrombin With 3-Cycle With F
pdb|4AX9|H Chain H, Human Thrombin Complexed With Napsagatran, Ro0466240
pdb|4AYV|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AYY|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AZ2|B Chain B, Human Thrombin - Inhibitor Complex
pdb|1GHW|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-centered Short Hydrogen Bonding Network At The
Active Site
Length = 257
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1ABJ|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1DWB|H Chain H, Crystallographic Analysis At 3.0-angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-directed Inhibitors
pdb|1DWC|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWD|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWE|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1FPH|H Chain H, The Interaction Of Thrombin With Fibrinogen: A Structural
Basis For Its Specificity
pdb|1HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of Alpha-
Thrombin
pdb|1IHS|H Chain H, Crystal Structure Of The Complex Of Human Alpha-thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1IHT|H Chain H, Crystal Structure Of The Complex Of Human Alpha-Thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1PPB|H Chain H, The Refined 1.9 Angstroms Crystal Structure Of Human
Alpha-Thrombin: Interaction With D-Phe-Pro-Arg
Chloromethylketone And Significance Of The
Tyr-Pro-Pro-Trp Insertion Segment
pdb|1THR|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1THS|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1TMB|H Chain H, Molecular Basis For The Inhibition Of Human Alpha-thrombin
By The Macrocyclic Peptide Cyclotheonamide A
pdb|2HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of
Alpha-Thrombin
pdb|2HPP|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-Thrombin
pdb|2HPQ|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-thrombin
pdb|3HTC|H Chain H, The Structure Of A Complex Of Recombinant Hirudin And
Human Alpha-Thrombin
pdb|4HTC|H Chain H, The Refined Structure Of The Hirudin-Thrombin Complex
pdb|1HUT|H Chain H, The Structure Of Alpha-Thrombin Inhibited By A 15-Mer
Single-Stranded Dna Aptamer
pdb|1NRN|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRO|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRP|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRQ|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRR|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRS|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1TMT|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1TMU|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1HLT|H Chain H, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HLT|K Chain K, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HAH|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1HAI|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|3HAT|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1FPC|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1HBT|H Chain H, Human Alpha-Thrombin Complexed With A Peptidyl Pyridinium
Methyl Ketone Containing Bivalent Inhibitor
pdb|1HDT|H Chain H, Structure Of A Retro-Binding Peptide Inhibitor Complexed
With Human Alpha-Thrombin
pdb|1HAO|H Chain H, Complex Of Human Alpha-thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (based On Nmr Model Of
Dna)
pdb|1HAP|H Chain H, Complex Of Human Alpha-Thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (Based On X-Ray Model Of
Dna)
pdb|1AHT|H Chain H, Crystal Structure Of Human Alpha-Thrombin Complexed With
Hirugen And P-Amidinophenylpyruvate At 1.6 Angstroms
Resolution
pdb|1DIT|H Chain H, Complex Of A Divalent Inhibitor With Thrombin
pdb|1TOM|H Chain H, Alpha-Thrombin Complexed With Hirugen
pdb|1HXF|H Chain H, Human Thrombin Complex With Hirudin Variant
pdb|1BMM|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-4-[(Aminoiminomethyl)
Amino]-N-[[1-[3-Hydroxy-2-[(2-
Naphthalenylsulfonyl)amino]-1-
Oxopropyl]-2-Pyrrolidinyl] Methyl]butanamide
(Bms-186282)
pdb|1BMN|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-1-(Aminoiminomethyl)-
N-[[1-[n-[(2-Naphthalenylsulfonyl)-L-Seryl]-
Pyrrolidinyl]methyl]-3- Piperidenecarboxamide
(Bms-189090)
pdb|1UMA|H Chain H, Alpha-Thrombin (Hirugen) Complexed With
Na-(N,N-Dimethylcarbamoyl)- Alpha-Azalysine
pdb|1LHD|H Chain H, Human Alpha-thrombin Complexed With
Ac-(d)phe-pro-borolys-oh
pdb|1LHE|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-N-
Butyl-Amidino-Glycine-Oh
pdb|1LHF|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-
Homolys-Oh
pdb|1LHG|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-
Boroornithine-Oh
pdb|1LHC|H Chain H, Human Alpha-Thrombin Complexed With
Ac-(D)phe-Pro-Boroarg-Oh
pdb|1AD8|H Chain H, Complex Of Thrombin With And Inhibitor Containing A Novel
P1 Moiety
pdb|1AI8|H Chain H, Human Alpha-Thrombin Ternary Complex With The Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Borompg
pdb|1AIX|H Chain H, Human Alpha-Thrombin Ternary Complex With Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Boroval
pdb|1AE8|H Chain H, Human Alpha-Thrombin Inhibition By
Eoc-D-Phe-Pro-Azalys-Onp
pdb|1AFE|H Chain H, Human Alpha-Thrombin Inhibition By Cbz-Pro-Azalys-Onp
pdb|1UVS|H Chain H, Bovine Thrombin--Bm51.1011 Complex
pdb|5GDS|H Chain H, Hirunorms Are True Hirudin Mimetics. The Crystal Structure
Of Human Alpha-Thrombin:hirunorm V Complex
pdb|1AY6|H Chain H, Thrombin Inhibitor From Theonalla, Cyclotheanamide-Based
Macrocyclic Tripeptide Motif
pdb|1A46|H Chain H, Thrombin Complexed With Hirugen And A Beta-Strand Mimetic
Inhibitor
pdb|1A4W|H Chain H, Crystal Structures Of Thrombin With Thiazole-Containing
Inhibitors: Probes Of The S1' Binding Site
pdb|1A5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1B5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1TBZ|H Chain H, Human Thrombin With Active Site N-Methyl-D
Phenylalanyl-N-[5-
(Aminoiminomethyl)amino]-1-{{benzothiazolyl)carbonyl]
Butyl]-L- Prolinamide Trifluroacetate And
Exosite-Hirugen
pdb|1A2C|H Chain H, Structure Of Thrombin Inhibited By Aeruginosin298-A From A
Blue-Green Alga
pdb|1A61|H Chain H, Thrombin Complexed With A Beta-Mimetic Thiazole-Containing
Inhibitor
pdb|1A3B|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog1
pdb|1A3E|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog2
pdb|1AWF|H Chain H, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|B Chain B, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|D Chain D, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1BCU|H Chain H, Alpha-Thrombin Complexed With Hirugen And Proflavin
pdb|8KME|2 Chain 2, Crystal Structure Of Human Alpha-thrombin Inhibited With
Sel2770.
pdb|1BA8|B Chain B, Thrombin Inhibitor With A Rigid Tripeptidyl Aldehydes
pdb|1BB0|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1CA8|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|4THN|H Chain H, The Crystal Structure Of Alpha-Thrombin-Hirunorm Iv
Complex Reveals A Novel Specificity Site Recognition
Mode.
pdb|1QBV|H Chain H, Crystal Structure Of Thrombin Complexed With An
Guanidine-Mimetic Inhibitor
pdb|1D4P|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
5- Amidinoindole-4-benzylpiperidine Inhibitor
pdb|7KME|H Chain H, Crystal Structure Of Human Alpha-Thrombin Inhibited With
Sel2711.
pdb|1QHR|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ1|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ6|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ7|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1D3P|B Chain B, Crystal Structure Of Human Aplha-Thrombin In Complex With
Benzo[b]thiophene Inhibitor 3
pdb|1D3Q|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 2
pdb|1D3T|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 1
pdb|1C4U|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4V|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4Y|2 Chain 2, Selective Non-Electrophilic Thrombin Inhibitors
pdb|1DE7|H Chain H, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1DE7|K Chain K, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1G30|B Chain B, Thrombin Inhibitor Complex
pdb|1G32|B Chain B, Thrombin Inhibitor Complex
pdb|1KTS|B Chain B, Thrombin Inhibitor Complex
pdb|1KTT|B Chain B, Thrombin Inhibitor Complex
pdb|1K21|H Chain H, Human Thrombin-Inhibitor Complex
pdb|1K22|H Chain H, Human Thrombin-inhibitor Complex
pdb|1NY2|2 Chain 2, Human Alpha Thrombin Inhibited By Rppgf And Hirugen
pdb|1O2G|H Chain H, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1OYT|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Fluorinated Inhibitor
pdb|1NO9|H Chain H, Design Of Weakly Basic Thrombin Inhibitors Incorporating
Novel P1 Binding Functions: Molecular And X-Ray
Crystallographic Studies.
pdb|1OOK|B Chain B, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
pdb|1P8V|C Chain C, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
pdb|1NU7|B Chain B, Staphylocoagulase-Thrombin Complex
pdb|1NU7|F Chain F, Staphylocoagulase-Thrombin Complex
pdb|1NZQ|H Chain H, D-Phe-Pro-Arg-Type Thrombin Inhibitor
pdb|1O0D|H Chain H, Human Thrombin Complexed With A D-Phe-Pro-Arg-Type
Inhibitor And A C- Terminal Hirudin Derived Exo-Site
Inhibitor
pdb|1MU6|B Chain B, Crystal Structure Of Thrombin In Complex With L-378,622
pdb|1MU8|B Chain B, Thrombin-Hirugen_l-378,650
pdb|1MUE|B Chain B, Thrombin-Hirugen-L405,426
pdb|1SR5|C Chain C, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1O5G|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1XMN|B Chain B, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|D Chain D, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|F Chain F, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|H Chain H, Crystal Structure Of Thrombin Bound To Heparin
pdb|1WAY|B Chain B, Active Site Thrombin Inhibitors
pdb|1T4U|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|1T4V|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|2AFQ|B Chain B, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2AFQ|D Chain D, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2A45|B Chain B, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|E Chain E, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|1W7G|H Chain H, Alpha-Thrombin Complex With Sulfated Hirudin (Residues
54-65) And L- Arginine Template Inhibitor Cs107
pdb|2FES|H Chain H, Orally Active Thrombin Inhibitors
pdb|2C8W|B Chain B, Thrombin Inhibitors
pdb|2C8X|B Chain B, Thrombin Inhibitors
pdb|2C8Y|B Chain B, Thrombin Inhibitors
pdb|2C8Z|B Chain B, Thrombin Inhibitors
pdb|2C90|B Chain B, Thrombin Inhibitors
pdb|2C93|B Chain B, Thrombin Inhibitors
pdb|2FEQ|H Chain H, Orally Active Thrombin Inhibitors
pdb|2BVS|H Chain H, Human Thrombin Complexed With Fragment-Based Small
Molecules Occupying The S1 Pocket
pdb|2BVX|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-P2-Linker
pdb|2BXT|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2BXU|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2A2X|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
Inh12
pdb|2ANK|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
And An Exosite Decapeptide
pdb|2GDE|H Chain H, Thrombin In Complex With Inhibitor
pdb|2H9T|H Chain H, Crystal Structure Of Human Alpha-Thrombin In Complex With
Suramin
pdb|2JH0|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH5|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH6|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|1C1U|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1V|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1W|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5L|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5N|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5O|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1HXE|H Chain H, Serine Protease
pdb|2UUF|B Chain B, Thrombin-Hirugen Binary Complex At 1.26a Resolution
pdb|2UUJ|B Chain B, Thrombin-Hirugen-Gw473178 Ternary Complex At 1.32a
Resolution
pdb|2UUK|B Chain B, Thrombin-Hirugen-Gw420128 Ternary Complex At 1.39a
Resolution
pdb|3BF6|H Chain H, Thrombin:suramin Complex
pdb|2R2M|B Chain B, 2-(2-chloro-6-fluorophenyl)acetamides As Potent Thrombin
Inhibitors
pdb|3EGK|H Chain H, Knoble Inhibitor
pdb|2ZC9|H Chain H, Thrombin In Complex With Inhibitor
pdb|2ZDA|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZDV|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZF0|H Chain H, Exploring Thrombin S1 Pocket
pdb|3E6P|H Chain H, Crystal Structure Of Human Meizothrombin Desf1
pdb|2ZFF|H Chain H, Exploring Thrombin S1-Pocket
pdb|2ZFP|H Chain H, Thrombin Inibition
pdb|2ZGB|H Chain H, Thrombin Inhibition
pdb|2ZGX|H Chain H, Thrombin Inhibition
pdb|2ZFQ|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZFR|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHQ|H Chain H, Thrombin Inhibition
pdb|2ZI2|H Chain H, Thrombin Inhibition
pdb|2ZIQ|H Chain H, Thrombin Inhibition
pdb|2ZG0|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHE|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHF|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHW|H Chain H, Exploring Thrombin S3 Pocket
pdb|3C27|B Chain B, Cyanofluorophenylacetamides As Orally Efficacious Thrombin
Inhibitors
pdb|2ZNK|H Chain H, Thrombin Inhibition
pdb|2ZO3|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3D49|H Chain H, Thrombin Inhibition
pdb|3DA9|B Chain B, Crystal Structure Of Thrombin In Complex With Inhibitor
pdb|3DHK|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3DT0|H Chain H, Understanding Thrombin Inhibition
pdb|3DUX|H Chain H, Understanding Thrombin Inhibition
pdb|3EQ0|H Chain H, Thrombin Inhibitor
pdb|3F68|H Chain H, Thrombin Inhibition
pdb|3PMH|B Chain B, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
pdb|3P6Z|B Chain B, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P6Z|H Chain H, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3LDX|H Chain H, Discovery And Clinical Evaluation Of Rwj-671818, A
Thrombin Inhibitor With An Oxyguanidine P1 Motif
pdb|3P70|B Chain B, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|D Chain D, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|F Chain F, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|H Chain H, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3TU7|H Chain H, Human Alpha-Thrombin Complexed With
N-(Methylsulfonyl)-D-Phenylalanyl-
N-((1-Carbamimidoyl-4-Piperidinyl)methyl)-L-Prolinamide
(Bms-189664)
pdb|3QLP|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And A Modified Thrombin Binding Aptamer (Mtba)
pdb|3P17|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3B23|B Chain B, Crystal Structure Of Thrombin-Variegin Complex: Insights
Of A Novel Mechanism Of Inhibition And Design Of Tunable
Thrombin Inhibitors
pdb|3QTO|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QTV|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QX5|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QWC|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3U69|H Chain H, Unliganded Wild-Type Human Thrombin
pdb|3U8T|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Cys
pdb|3RLW|H Chain H, Human Thrombin In Complex With Mi328
pdb|3RLY|H Chain H, Human Thrombin In Complex With Mi329
pdb|3RM0|H Chain H, Human Thrombin In Complex With Mi354
pdb|3RM2|H Chain H, Human Thrombin In Complex With Mi003
pdb|3RML|H Chain H, Human Thrombin In Complex With Mi331
pdb|3RMM|H Chain H, Human Thrombin In Complex With Mi332
pdb|3RMN|H Chain H, Human Thrombin In Complex With Mi341
pdb|3RMO|H Chain H, Human Thrombin In Complex With Mi004
pdb|3U8O|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-D-Thr
pdb|3U8R|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Ile
pdb|3SHA|H Chain H, Human Thrombin In Complex With Ubthr97
pdb|3SHC|H Chain H, Human Thrombin In Complex With Ubthr101
pdb|3SI3|H Chain H, Human Thrombin In Complex With Ubthr103
pdb|3SI4|H Chain H, Human Thrombin In Complex With Ubthr104
pdb|3SV2|H Chain H, Human Thrombin In Complex With Ubthr105
pdb|4E7R|H Chain H, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4E7R|G Chain G, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4DIH|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Sodium Ions
pdb|4DII|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Potassium Ions
pdb|3T5F|H Chain H, Human Thrombin In Complex With Mi340
pdb|3UTU|H Chain H, High Affinity Inhibitor Of Human Thrombin
pdb|3U98|H Chain H, Human Thrombin In Complex With Mi001
pdb|3U9A|H Chain H, Human Thrombin In Complex With Mi330
pdb|4E05|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|4E06|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|3UWJ|H Chain H, Human Thrombin In Complex With Mi353
pdb|4BAH|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAK|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAM|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAN|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAO|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAQ|B Chain B, Thrombin In Complex With Inhibitor
Length = 259
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors
Length = 259
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With
Fibrinopeptide A (7- 16)
pdb|1JMO|H Chain H, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 260
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 58 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 117
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 118 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 176
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 177 STRIRITDNMFCAGYKPDE 195
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
RI+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 47
>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|D Chain D, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|F Chain F, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1TB6|H Chain H, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|2B5T|B Chain B, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|2B5T|D Chain D, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|3B9F|H Chain H, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
pdb|3GIS|B Chain B, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|D Chain D, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|F Chain F, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3LU9|B Chain B, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|3LU9|E Chain E, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|4DT7|B Chain B, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DT7|D Chain D, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DY7|B Chain B, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|E Chain E, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 259
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190ALA190 PROTEASE, Structure-Based Drug Design
pdb|1SB1|H Chain H, Novel Non-Covalent Thrombin Inhibitors Incorporating P1
4,5,6,7- Tetrahydrobenzothiazole Arginine Side Chain
Mimetics
pdb|2PW8|H Chain H, Crystal Structure Of Sulfo-Hirudin Complexed To Thrombin
pdb|3DD2|H Chain H, Crystal Structure Of An Rna Aptamer Bound To Human
Thrombin
pdb|1GJ4|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190/ala190 Protease, Structure-based Drug Design
Length = 258
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The
Alternative Form
pdb|3SQH|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The The
Open Form
Length = 290
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 88 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 147
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 148 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 206
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 207 STRIRITDNMFCAGYKPDE 225
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
RI+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 31 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 77
>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To
Ppack
Length = 259
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor
Length = 289
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 87 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 146
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 147 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 205
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 206 STRIRITDNMFCAGYKPDE 224
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
RI+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 76
>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|N Chain N, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|O Chain O, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|P Chain P, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1E0F|D Chain D, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|F Chain F, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|E Chain E, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
Length = 259
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1
Length = 261
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 61 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 120
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 121 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 179
Query: 269 VIEESIGIGMLCA--APDE 285
I M CA PDE
Sbjct: 180 STRIRITDNMFCAYYKPDE 198
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 6/50 (12%)
Query: 320 IILGGEADIGEFPWQVAI------ALDGMFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + + F CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFAKHRRSPGERFLCGASLISDRWVLTAAHCLL 50
>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
At 1.8a
pdb|1NT1|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
pdb|1TA2|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 1
pdb|1TA6|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 14b
pdb|1SL3|A Chain A, Crystal Structue Of Thrombin In Complex With A Potent P1
Heterocycle- Aryl Based Inhibitor
pdb|1Z71|A Chain A, Thrombin And P2 Pyridine N-oxide Inhibitor Complex
Structure
pdb|1ZRB|A Chain A, Thrombin In Complex With An Azafluorenyl Inhibitor 23b
pdb|1ZGI|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 21
pdb|1ZGV|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 2
pdb|3C1K|A Chain A, Crystal Structure Of Thrombin In Complex With Inhibitor 15
Length = 287
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 86 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 145
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 146 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 204
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 205 STRIRITDNMFCAGYKPDE 223
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
RI+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 29 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 75
>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To
D-Phe-Pro-Arg- Chloromethylketone
pdb|3S7H|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|D Chain D, Structure Of Thrombin Mutant Y225p In The E Form
Length = 259
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electrophilic Inhibitors Having Cyclohexyl Moieties
At P1
pdb|1G37|A Chain A, Crystal Structure Of Human Alpha-thrombin Complexed With
Bch-10556 And Exosite-directed Peptide
Length = 287
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 87 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 146
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 147 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 205
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 206 STRIRITDNMFCAGYKPDE 224
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
RI+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 76
>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electophilic Inhibitors Having Cyclohexyl Moieties
At P1
Length = 288
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 87 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 146
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 147 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 205
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 206 STRIRITDNMFCAGYKPDE 224
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
RI+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 76
>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+
Form
pdb|3JZ2|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E Form
pdb|3QGN|B Chain B, The Allosteric E-E Equilibrium Is A Key Property Of The
Trypsin Fold
Length = 259
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGPLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a
pdb|2PGQ|B Chain B, Human Thrombin Mutant C191a-C220a In Complex With The
Inhibitor Ppack
Length = 259
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel
Bicyclic Lactam Inhibitor
Length = 305
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 93 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 152
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 153 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 211
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 212 STRIRITDNMFCAGYKPDE 230
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
RI+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 36 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 82
>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
pdb|1EOL|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
Length = 289
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 89 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 148
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 149 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 207
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 208 STRIRITDNMFCAGYKPDE 226
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
RI+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 32 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 78
>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To
D-phe-pro-arg- Chloromethylketone
Length = 259
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K
Length = 259
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure
Length = 227
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 3/133 (2%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG H++ + T V VRR + H ++ L+NDI LL+L R +T + P
Sbjct: 48 SSINVTLGAHNIMERERTQQVI-PVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSP 106
Query: 220 VCLPQK-GESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
+ LP+ E G V GWG M + LQ+++++V S +C + I
Sbjct: 107 INLPRSLAEVKPGMMCSVAGWGRLGVNMPS-TDKLQEVDLEVQSEEKCIARFKNYIPFTQ 165
Query: 279 LCAAPDETQGTCF 291
+CA + F
Sbjct: 166 ICAGDPSKRKNSF 178
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL V GIVSYG + PD+YTR+S ++ WIH
Sbjct: 182 SGGPLVCNG----VAQGIVSYGRNDG----TTPDVYTRISSFLSWIH 220
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 344 FCGGALLNEHFVLTAAHCI 362
CGG L+ E FVLTAAHC+
Sbjct: 28 ICGGFLVREDFVLTAAHCL 46
>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex
pdb|1NU9|D Chain D, Staphylocoagulase-prethrombin-2 Complex
Length = 291
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 89 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 148
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 149 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 207
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 208 STRIRITDNMFCAGYKPDE 226
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
RI+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 32 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 78
>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1DOJ|A Chain A, Crystal Structure Of Human Alpha-ThrombinRwj-51438 Complex
At 1.7 A
pdb|1XM1|A Chain A, Nonbasic Thrombin Inhibitor Complex
Length = 295
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 93 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 152
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 153 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 211
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 212 STRIRITDNMFCAGYKPDE 230
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
RI+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 36 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 82
>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D-
Phe-Pro-Arg-Chloromethylketone
Length = 259
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor
pdb|1LO6|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor At 1.56 A Resolution
Length = 223
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
L + LG H+L Q E+S + V R + H + DI LL+L RP L+ IQP+
Sbjct: 46 NLQVFLGKHNLRQ-RESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPL 104
Query: 221 CLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLC 280
L ++ S H++GWG T+ G+ T+Q + ++S C I MLC
Sbjct: 105 PL-ERDCSANTTSCHILGWGKTAD--GDFPDTIQCAYIHLVSREECEHAYPGQITQNMLC 161
Query: 281 AAPDETQG 288
A DE G
Sbjct: 162 AG-DEKYG 168
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
++ GG D P+Q A+ G CGG L++ +VLTAAHC
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC 42
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G H L G+VS+G C P +YT V Y WI
Sbjct: 176 SGGPLVC---GDH-LRGLVSWGNIPCG-SKEKPGVYTNVCRYTNWI 216
>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1
Length = 424
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH-PFVLSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 222 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 281
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 282 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 340
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 341 STRIRITDNMFCAGYKPDE 359
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
RI+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 165 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 211
>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride
pdb|2A0Q|D Chain D, Structure Of Thrombin In 400 Mm Potassium Chloride
Length = 257
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SFQ|E Chain E, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SG8|B Chain B, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SG8|E Chain E, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SGI|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SGI|E Chain E, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SHH|B Chain B, Slow Form Of Thrombin Bound With Ppack
pdb|1SHH|E Chain E, Slow Form Of Thrombin Bound With Ppack
pdb|2HWL|B Chain B, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|2HWL|D Chain D, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|3BV9|B Chain B, Structure Of Thrombin Bound To The Inhibitor Fm19
Length = 259
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1MH0|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
Length = 287
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 87 NDLLVRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 146
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 147 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 205
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 206 STRIRITDNMFCAGYKPDE 224
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 319 RIILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
RI+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 30 RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 76
>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
pdb|1FI8|B Chain B, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
Length = 228
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S++ + LG H++ + + + V +++ H ++ +SNDI LL+L + ++P
Sbjct: 49 SKIQVTLGAHNIKEQEKMQQII-PVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKP 107
Query: 220 VCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE 272
+ LP++ G +V GWG PMG+ S TLQ++E+ V + +C + ++
Sbjct: 108 LNLPRRNVKVKPGDVCYVAGWGKLG-PMGKYSDTLQEVELTVQEDQKCESYLKN 160
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 320 IILGGEADIGEFPW----QVAIALDGMFFCGGALLNEHFVLTAAHC 361
II G EA P+ Q+ G CGG L+ E FVLTAAHC
Sbjct: 1 IIGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAHC 46
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL ++ V AGIVSYG S P +T+VS ++ WI
Sbjct: 184 SGGPLVCKK----VAAGIVSYGQND----GSTPRAFTKVSTFLSWI 221
>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
pdb|3MYW|B Chain B, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
Length = 223
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F+ L NDI L++L P L +
Sbjct: 44 SRIQVRLGEHNIDVL-EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
V LP+ + G + GWG T LQ L+ VLS++ C + I M+
Sbjct: 103 VSLPRSCAA-AGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSAYPGQITGNMI 161
Query: 280 C-----AAPDETQGTCFVPV 294
C D QG PV
Sbjct: 162 CVGFLEGGKDSCQGDSGGPV 181
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G P+QV++ G FCGG+L+N +V++AAHC
Sbjct: 1 IVGGYTCAANSVPYQVSLN-SGSHFCGGSLINSQWVVSAAHC 41
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ L GIVS+G GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGQ----LQGIVSWGY-GCA-QKNKPGVYTKVCNYVNWIQ 217
>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin
Length = 231
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F+ L NDI L++L P L +
Sbjct: 52 SRIQVRLGEHNIDVL-EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVAT 110
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST-----VIEESI 274
V LP+ + G + GWG T LQ L+ VLS++ C + + I
Sbjct: 111 VSLPRSCAA-AGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMI 169
Query: 275 GIGMLCAAPDETQGTCFVPV 294
+G L D QG PV
Sbjct: 170 CVGFLEGGKDSCQGDSGGPV 189
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
+I+ G P+QV++ G FCGG+L+N +V++AAHC
Sbjct: 8 KIVGGYTCAANSIPYQVSLN-SGSHFCGGSLINSQWVVSAAHC 49
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ L GIVS+G GCA + P +YT+V Y+ WI
Sbjct: 185 SGGPVVCNGQ----LQGIVSWGY-GCA-QKNKPGVYTKVCNYVNWIQ 225
>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure
Solution And Refinement At 1.8 Angstroms Resolution
Length = 235
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 13/131 (9%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVL-----------SNDIALLQLDRPVPLT 214
LG ++L + +E RR VR+ H + P ++ SND+ LL L P +T
Sbjct: 49 LGRNNLFK-DEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADIT 107
Query: 215 GTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
G ++ + LP K E +G GWG T+ S LQ + + +LSN +C ++++
Sbjct: 108 GGVKVIDLPTK-EPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDNV 166
Query: 275 GIGMLCAAPDE 285
MLCA E
Sbjct: 167 TDVMLCAGEME 177
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 11/61 (18%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G + + PWQVA+ + + CGG L++ +V+TAAHC + Y VL
Sbjct: 1 IVGGYKCEKNSQPWQVAVINE--YLCGGVLIDPSWVITAAHCY---------SNNYQVLL 49
Query: 380 G 380
G
Sbjct: 50 G 50
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
LG ++L +E + GV + H ++ F++ NDIAL++L V L TIQ CLP +
Sbjct: 70 LGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSE 129
Query: 226 GESFIGKR-GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS------TVIEESIGIGM 278
G V GWG + G + LQ+ V+ A CS T ++E+ M
Sbjct: 130 GSLLPQDYPCFVTGWG-RLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKET----M 184
Query: 279 LCAAPDETQGTC 290
+CA D C
Sbjct: 185 VCAGGDGVISAC 196
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL + DG + GIVS+G P ++TRVS YI WI+
Sbjct: 200 SGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWIN 246
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 319 RIILGGEADIGEFPWQVAIAL--DGMF--FCGGALLNEHFVLTAAHCI 362
R++ G +A +PWQ+++ D + CGG L+ + VLTAAHCI
Sbjct: 13 RVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60
>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To
Atomic Resolution
pdb|1XVO|A Chain A, Trypsin From Fusarium Oxysporum At Ph 6
pdb|1FY5|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDN|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FY4|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FN8|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDQ|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
Length = 224
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 321 ILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAG 380
+ G A G+FP+ V+I+ +G +CGG+LLN + VLTAAHC+ + Q G+ + AG
Sbjct: 2 VGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVS-----GYAQSGFQIRAG 56
Query: 381 IVS 383
+S
Sbjct: 57 SLS 59
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 48/126 (38%), Gaps = 9/126 (7%)
Query: 178 SHVRRGVRRVLFHSHFHPFVL--SNDIALLQLDRPVPLTGTIQPVCLPQKG-ESFIGKRG 234
S G+ L HP +ND+A+L+L +P G I L G + G
Sbjct: 59 SRTSGGITSSLSSVRVHPSYSGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSA 118
Query: 235 HVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC------STVIEESIGIGMLCAAPDETQG 288
V GWG TS L K+ V ++S A C S + + G+ D QG
Sbjct: 119 TVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQG 178
Query: 289 TCFVPV 294
P+
Sbjct: 179 DSGGPI 184
>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In
Complex With A Calcium Ion.
pdb|3GYM|A Chain A, Structure Of Prostasin In Complex With Aprotinin
pdb|3GYM|B Chain B, Structure Of Prostasin In Complex With Aprotinin
Length = 261
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I G A G++PWQV+I +G+ CGG+L++E +VL+AAHC P ++ Y V
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCF----PSEHHKEAYEVKL 56
Query: 380 G 380
G
Sbjct: 57 G 57
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 5/109 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ LG H L +E + V ++ ++ H + DIALLQL RP+ + I+P+ LP
Sbjct: 54 VKLGAHQLDSYSEDAKVST-LKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLP 112
Query: 224 QKGESFI-GKRGHVVGWG--VTSFPMGEPSPTLQKLEVKVLSNARCSTV 269
SF G V GWG S + P P LQ+LEV ++S C+++
Sbjct: 113 AAQASFPNGLHCTVTGWGHVAPSVSLLTPKP-LQQLEVPLISRETCNSL 160
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL+ +G L GIVS+G C + P +YT S Y WI
Sbjct: 194 SGGPLSCPVEGLWYLTGIVSWG-DACGAR-NRPGVYTLASSYASWIQ 238
>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A
Covalent Benzoxazole Inhibitor
pdb|3E16|B Chain B, X-Ray Structure Of Human Prostasin In Complex With
Benzoxazole Warhead Peptidomimic, Lysine In P3
pdb|3E1X|B Chain B, The Crystal Structure Of Apo Prostasin At 1.7 Angstroms
Resolution
pdb|3FVF|B Chain B, The Crystal Structure Of Prostasin Complexed With Camostat
At 1.6 Angstroms Resolution
pdb|3E0N|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With
Dffr- Chloromethyl Ketone Inhibitor
Length = 271
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I G A G++PWQV+I +G+ CGG+L++E +VL+AAHC P ++ Y V
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCF----PSEHHKEAYEVKL 56
Query: 380 G 380
G
Sbjct: 57 G 57
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 5/109 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ LG H L +E + V ++ ++ H + DIALLQL RP+ + I+P+ LP
Sbjct: 54 VKLGAHQLDSYSEDAKVST-LKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLP 112
Query: 224 QKGESFI-GKRGHVVGWG--VTSFPMGEPSPTLQKLEVKVLSNARCSTV 269
SF G V GWG S + P P LQ+LEV ++S C+++
Sbjct: 113 AAQASFPNGLHCTVTGWGHVAPSVSLLTPKP-LQQLEVPLISRETCNSL 160
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL+ +G L GIVS+G C + P +YT S Y WI
Sbjct: 194 SGGPLSCPVEGLWYLTGIVSWG-DACGAR-NRPGVYTLASSYASWIQ 238
>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1TFX|B Chain B, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1LDT|T Chain T, Complex Of Leech-Derived Tryptase Inhibitor With Porcine
Trypsin
pdb|1AVW|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Orthorhombic Crystal Form
pdb|1AVX|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Tetragonal Crystal Form
pdb|1EJA|A Chain A, Structure Of Porcine Trypsin Complexed With Bdellastasin,
An Antistasin-Type Inhibitor
pdb|1S5S|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S6F|A Chain A, Porcine Trypsin Covalent Complex With Borate And
Guanidine- 3 Inhibitor
pdb|1S6H|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S81|A Chain A, Porcine Trypsin With No Inhibitor Bound
pdb|1S82|A Chain A, Porcine Trypsin Complexed With Borate And Ethylene Glycol
pdb|1S83|A Chain A, Porcine Trypsin Complexed With 4-amino Propanol
pdb|1S84|A Chain A, Porcine Trypsin Covalent Complex With 4-Amino Butanol,
Borate And Ethylene Glycol
pdb|1S85|A Chain A, Porcine Trypsin Complexed With P-Hydroxymethyl Benzamidine
And Borate
pdb|1H9I|E Chain E, Complex Of Eeti-Ii Mutant With Porcine Trypsin
pdb|1V6D|A Chain A, The Crystal Structure Of The Trypsin Complex With
Synthetic Heterochiral Peptide
pdb|1TX6|A Chain A, Trypsin:bbi Complex
pdb|1TX6|B Chain B, Trypsin:bbi Complex
pdb|1TX6|C Chain C, Trypsin:bbi Complex
pdb|1TX6|D Chain D, Trypsin:bbi Complex
pdb|1Z7K|A Chain A, Crystal Structure Of Trypsin- Ovomucoid Turkey Egg White
Inhibitor Complex
pdb|1YF4|A Chain A, Crystal Structure Of Trypsin-Vasopressin Complex
Length = 223
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F+ L NDI L++L P L +
Sbjct: 44 SRIQVRLGEHNIDVL-EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST-----VIEESI 274
V LP+ + G + GWG T LQ L+ VLS++ C + + I
Sbjct: 103 VSLPRSCAA-AGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMI 161
Query: 275 GIGMLCAAPDETQGTCFVPV 294
+G L D QG PV
Sbjct: 162 CVGFLEGGKDSCQGDSGGPV 181
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G P+QV++ G FCGG+L+N +V++AAHC
Sbjct: 1 IVGGYTCAANSIPYQVSLN-SGSHFCGGSLINSQWVVSAAHC 41
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ L GIVS+G GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGQ----LQGIVSWGY-GCA-QKNKPGVYTKVCNYVNWIQ 217
>pdb|2A31|A Chain A, Trypsin In Complex With Borate
pdb|2A32|A Chain A, Trypsin In Complex With Benzene Boronic Acid
Length = 223
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F+ L NDI L++L P L +
Sbjct: 44 SRIQVRLGEHNIDVL-EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST-----VIEESI 274
V LP+ + G + GWG T LQ L+ VLS++ C + + I
Sbjct: 103 VSLPRSCAA-AGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMI 161
Query: 275 GIGMLCAAPDETQGTCFVPV 294
+G L D QG PV
Sbjct: 162 CVGFLEGGKDSCQGDSGGPV 181
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 330 EFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
P+QV++ G FCGG+L+N +V++AAHC
Sbjct: 11 SIPYQVSLN-SGSHFCGGSLINSQWVVSAAHC 41
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ L GIVS+G GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGQ----LQGIVSWGY-GCA-QKNKPGVYTKVCNYVNWIQ 217
>pdb|3R3G|B Chain B, Structure Of Human Thrombin With Residues 145-150 Of
Murine Thrombin
Length = 259
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG T+ +PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLRETWTTNINEIQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self-
Inhibited Conformation
pdb|3BEI|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A
Self_inhibited Conformation
pdb|3BEF|B Chain B, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3BEF|E Chain E, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3QDZ|B Chain B, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4.
pdb|3QDZ|D Chain D, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4
Length = 259
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 14/139 (10%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L +IAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRNIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA--PDE 285
I M CA PDE
Sbjct: 176 STRIRITDNMFCAGYKPDE 194
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To
Inhibitor Eglin C From Hirudo Medicinalis
Length = 249
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
+G ++L +E + GV + H ++ +L NDIAL++L V L+ TIQ CLP+K
Sbjct: 57 VGKNNLEVEDEEGSLFVGVDTIHVHKRWNALLLRNDIALIKLAEHVELSDTIQVACLPEK 116
Query: 226 GESFIGKR--GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIG--MLCA 281
+S + K +V GWG + G + LQ+ V+ +A CS + + M+CA
Sbjct: 117 -DSLLPKDYPCYVTGWG-RLWTNGPIADKLQQGLQPVVDHATCSRIDWWGFRVKKTMVCA 174
Query: 282 APDETQGTC 290
D C
Sbjct: 175 GGDGVISAC 183
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 321 ILGGE-ADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCI 362
++GGE A +PWQ+++ CGG L+ +FVLTAAHCI
Sbjct: 1 VVGGEDARPHSWPWQISLQYLKNDTWRHTCGGTLIASNFVLTAAHCI 47
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 364 TGGPLTFE-QDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL + ++G + GIVS+G P +YTRVS YI WI+
Sbjct: 187 SGGPLNCQLENGSWEVFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWIN 234
>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin
pdb|3DFL|A Chain A, Crystal Structure Of Human Prostasin Complexed To 4-
Guanidinobenzoic Acid
Length = 263
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ LG H L +E + V ++ ++ H + DIALLQL RP+ + I+P+ LP
Sbjct: 54 VKLGAHQLDSYSEDAKVST-LKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLP 112
Query: 224 QKGESFI-GKRGHVVGWG--VTSFPMGEPSPTLQKLEVKVLSNARCSTV 269
SF G V GWG S + P P LQ+LEV ++S C+ +
Sbjct: 113 AANASFPNGLHCTVTGWGHVAPSVSLLTPKP-LQQLEVPLISRETCNAL 160
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I G A G++PWQV+I +G+ CGG+L++E +VL+AAHC P ++ Y V
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCF----PSEHHKEAYEVKL 56
Query: 380 G 380
G
Sbjct: 57 G 57
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL+ +G L GIVS+G C + P +YT S Y WI
Sbjct: 194 SGGPLSCPVEGLWYLTGIVSWG-DACGAR-NRPGVYTLASSYASWIQ 238
>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX
pdb|1C9P|A Chain A, Complex Of Bdellastasin With Porcine Trypsin
Length = 223
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F+ L NDI L++L P L +
Sbjct: 44 SRIQVRLGEHNIDVL-EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLXSRVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST-----VIEESI 274
V LP+ + G + GWG T LQ L+ VLS++ C + + I
Sbjct: 103 VSLPRSCAA-AGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMI 161
Query: 275 GIGMLCAAPDETQGTCFVPV 294
+G L D QG PV
Sbjct: 162 CVGFLEGGKDSCQGDSGGPV 181
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G P+QV++ G FCGG+L+N +V++AAHC
Sbjct: 1 IVGGYTCAANSIPYQVSLN-SGSHFCGGSLINSQWVVSAAHC 41
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ L GIVS+G GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGQ----LQGIVSWGY-GCA-QKNKPGVYTKVCNYVNWIQ 217
>pdb|3FZZ|A Chain A, Structure Of Grc
pdb|3FZZ|B Chain B, Structure Of Grc
Length = 227
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 162 LVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVC 221
+ + LG H++ ET + V + + H ++P SNDI LL+L R T ++P+
Sbjct: 51 MTVTLGAHNIKAKEETQQII-PVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLN 109
Query: 222 LPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIG-IGML 279
LP++ G +V GWG + P GE TL ++++ V + C + + S +
Sbjct: 110 LPRRNAHVKPGDECYVAGWGKVT-PDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEI 168
Query: 280 CAAPDETQGTCF 291
C + +G F
Sbjct: 169 CVGDSKIKGASF 180
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 343 FFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPD 397
FCGG L+ + FVLTAAHC G +T +++ A + + A +PD
Sbjct: 28 MFCGGFLVRDKFVLTAAHC--KGRSMTVTLGAHNIKAKEETQQIIPVAKAIPHPD 80
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL ++ AGIVSYG T S P ++TRV ++ WI
Sbjct: 184 SGGPLVCKR----AAAGIVSYGQTDG----SAPQVFTRVLSFVSWI 221
>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G
pdb|3G01|B Chain B, Structure Of Grc Mutant E192rE193G
Length = 227
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 162 LVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVC 221
+ + LG H++ ET + V + + H ++P SNDI LL+L R T ++P+
Sbjct: 51 MTVTLGAHNIKAKEETQQII-PVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLN 109
Query: 222 LPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIG-IGML 279
LP++ G +V GWG + P GE TL ++++ V + C + + S +
Sbjct: 110 LPRRNAHVKPGDECYVAGWGKVT-PDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEI 168
Query: 280 CAAPDETQGTCF 291
C + +G F
Sbjct: 169 CVGDSKIKGASF 180
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 343 FFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPD 397
FCGG L+ + FVLTAAHC G +T +++ A + + A +PD
Sbjct: 28 MFCGGFLVRDKFVLTAAHC--KGRSMTVTLGAHNIKAKEETQQIIPVAKAIPHPD 80
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL ++ AGIVSYG T S P ++TRV ++ WI
Sbjct: 184 SGGPLVCKR----AAAGIVSYGQTDG----SAPQVFTRVLSFVSWI 221
>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17
Complexed With Bovine Pancreatic Trypsin Inhibitor
(Bpti)
Length = 231
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+NDI L++L PV L +
Sbjct: 52 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 110
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
V LP G + + GWG T S + EP LQ L+ +L A C + +
Sbjct: 111 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 168
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
+ +G L D QG PV
Sbjct: 169 VCVGFLEGGKDSCQGNSGGPV 189
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 332 PWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAG 380
P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL G
Sbjct: 21 PYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEG 68
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 185 SGGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 225
>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186,
186a, 186b, 186c And 222 Replaced By Murine Thrombin
Equivalents
Length = 259
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQKGESF----IGKRGHVVGWG------VTSFPMGEPSPTLQKLEVKVLSNARCST 268
PVCLP + + G +G V GWG + G+PS LQ + + ++ C
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPS-VLQVVNLPIVERPVCKD 175
Query: 269 VIEESIGIGMLCAA 282
I M CA
Sbjct: 176 STRIRITDNMFCAG 189
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With
The Elastase Inhibitor Gr143783
Length = 241
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSN--DIALLQLDRPVPLTGTIQPVCLP 223
LG H L+ NE + V +++ H ++ LSN DIALL+L PV LT IQ CLP
Sbjct: 57 LGRHSLST-NEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLP 115
Query: 224 QKGESFIGKR-GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST--VIEESIGIGMLC 280
G +V GWG P LQ+ ++ V+ A CS ++ M+C
Sbjct: 116 AAGTILPNNYVCYVTGWGRLQTNGASPD-ILQQGQLLVVDYATCSKPGWWGSTVKTNMIC 174
Query: 281 AAPDETQGTC 290
A D +C
Sbjct: 175 AGGDGIISSC 184
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 5/49 (10%)
Query: 321 ILGGE-ADIGEFPWQVAIALD--GMF--FCGGALLNEHFVLTAAHCIMT 364
++GGE A +PWQV++ D G + CGG L+++ +VLTAAHCI +
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISS 49
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 364 TGGPLTFE-QDGYHVLAGIVSYGVT-GCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL + +G + GIVS+G + GC P ++TRVS YI WI+
Sbjct: 188 SGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHK-PSVFTRVSNYIDWIN 235
>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin
Inhibitor (Bpti)
Length = 233
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+NDI L++L PV L +
Sbjct: 54 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 112
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
V LP G + + GWG T S + EP LQ L+ +L A C + +
Sbjct: 113 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 170
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
+ +G L D QG PV
Sbjct: 171 VCVGFLEGGKDSCQGDAGGPV 191
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
+I+ G P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL
Sbjct: 10 KIVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVL 68
Query: 379 AG 380
G
Sbjct: 69 EG 70
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 187 AGGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 227
>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 254
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 20/144 (13%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
L+ LG+HDL++ + RR V +V+ S + P ++DIALL+L +PV LT + P+
Sbjct: 51 NLIAVLGEHDLSEHDGDEQSRR-VAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPL 109
Query: 221 CLPQKGES-----FIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIG 275
CLP++ S F+ + V GWG G + LQ L V L C +++S
Sbjct: 110 CLPERTFSERTLAFV-RFSLVSGWG-QLLDRGATALVLQVLNVPRLMTQDC---LQQSRK 164
Query: 276 IG--------MLCAA-PDETQGTC 290
+G M CA D ++ +C
Sbjct: 165 VGDSPNITEYMFCAGYSDGSKDSC 188
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G + GE PWQV + ++G CGG L+N +V++AAHC
Sbjct: 1 IVGGKDCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCF 43
>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|B Chain B, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|C Chain C, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|D Chain D, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|E Chain E, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|F Chain F, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|G Chain G, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|H Chain H, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|I Chain I, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|J Chain J, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|K Chain K, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|L Chain L, Crystal Structure Of Active Human Granzyme H
Length = 226
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG H++ + T V+R + H ++P SNDI LLQL+R T ++P
Sbjct: 48 SSINVTLGAHNIKEQERTQQFI-PVKRPIPHPAYNPKNFSNDIMLLQLERKAKWTTAVRP 106
Query: 220 VCLP-QKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVI 270
+ LP K + G+ V GWG S M + TLQ++ + V + +C +
Sbjct: 107 LRLPSSKAQVKPGQLCSVAGWGYVS--MSTLATTLQEVLLTVQKDCQCERLF 156
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 320 IILGGEADIGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHC 361
II G EA P+ + CGG L+ + FVLTAAHC
Sbjct: 1 IIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHC 45
>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic
Trypsinogen-Bpti Complex
Length = 231
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+NDI L++L PV L +
Sbjct: 52 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 110
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
V LP G + + GWG T S + EP LQ L+ +L A C + +
Sbjct: 111 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 168
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
+ +G L D QG PV
Sbjct: 169 VCVGFLEGGKDSCQGDSGGPV 189
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 332 PWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAG 380
P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL G
Sbjct: 21 PYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEG 68
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 185 SGGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 225
>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex
pdb|1YKT|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLC|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLD|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|3FP7|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Cleaved At The
Scissile Bond (Lys15-Ala16) Determined To The 1.46 A
Resolution Limit
pdb|3FP8|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Determined To The
1.46 A Resolution Limit
Length = 223
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+NDI L++L PV L +
Sbjct: 44 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
V LP G + + GWG T S + EP LQ L+ +L A C + +
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
+ +G L D QG PV
Sbjct: 161 VCVGFLEGGKDSCQGDAGGPV 181
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL
Sbjct: 1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 177 AGGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 217
>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin
pdb|2PSY|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin And Zinc
Length = 227
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 164 LHLGDHDLTQLNET-SHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCL 222
+ LG + L+ + E+ + +GV+ + + HP SND+ L++L+R + T ++P+ +
Sbjct: 50 VRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHPG-HSNDLMLIKLNRRIRPTKDVRPINV 108
Query: 223 PQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAA 282
S G + V GWG T P LQ L + VLS RC I M CA
Sbjct: 109 SSHCPS-AGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCAG 167
Query: 283 PDETQGTC 290
+ +C
Sbjct: 168 DKAGRDSC 175
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 320 IILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHC 361
II G + D+ PWQ A+ L +CG L++ ++LTAAHC
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHC 43
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ L G+VS+G CA P+ P +YT + ++ +WI
Sbjct: 179 SGGPVVCNGS----LQGLVSWGDYPCA-RPNRPGVYTNLCKFTKWIQ 220
>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 233
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+NDI L++L PV L +
Sbjct: 54 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 112
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
V LP G + + GWG T S + EP LQ L+ +L A C + +
Sbjct: 113 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 170
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
+ +G L D QG PV
Sbjct: 171 VCVGFLEGGKDSCQGDSGGPV 191
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 332 PWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAG 380
P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL G
Sbjct: 23 PYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEG 70
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 187 SGGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 227
>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|X Chain X, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 240
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 13/127 (10%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVL-----------SNDIALLQLDRPVPLT 214
LG ++ + +E S R V + + H F+ +L SND+ LL+L +P +T
Sbjct: 54 LGKNNFLE-DEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADIT 112
Query: 215 GTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
++P+ LP + E +G GWG T+ + LQ + +K+L N C E +
Sbjct: 113 DVVKPITLPTE-EPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKV 171
Query: 275 GIGMLCA 281
MLCA
Sbjct: 172 TDAMLCA 178
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 332 PWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
PW VA+ + CGG LL+ ++VLTAAHC
Sbjct: 16 PWHVAVYRFNKYQCGGVLLDRNWVLTAAHC 45
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL DG +L GI S+G C P+ P +YT++ ++ WI
Sbjct: 192 SGGPLIC--DG--ILQGITSWGPEPCG-EPTEPSVYTKLIKFSSWI 232
>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys
Length = 223
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+NDI L++L PV L +
Sbjct: 44 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
V LP G + + GWG T S + EP LQ L+ +L A C + +
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
+ +G L D QG PV
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPV 181
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL
Sbjct: 1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIV +G GCA +P P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGE----LQGIVKWGY-GCA-LPDNPGVYTKVCNYVDWIQ 217
>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|F Chain F, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|B Chain B, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|G Chain G, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|B Chain B, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|G Chain G, Bovine Chymotrypsin Complexed To Bpti
pdb|1AFQ|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|1VGC|B Chain B, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|B Chain B, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|B Chain B, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|B Chain B, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|B Chain B, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|B Chain B, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|C Chain C, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|D Chain D, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|B Chain B, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|F Chain F, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|B Chain B, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|F Chain F, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|F Chain F, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|F Chain F, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|F Chain F, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|F Chain F, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|F Chain F, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|F Chain F, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|F Chain F, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|B Chain B, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|F Chain F, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|B Chain B, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|F Chain F, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|B Chain B, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|F Chain F, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|F Chain F, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|B Chain B, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|B Chain B, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|B Chain B, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|B Chain B, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|B Chain B, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
pdb|3RU4|D Chain D, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 131
Score = 52.4 bits (124), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 320 IILGGEADIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHCIMT 364
I+ G EA G +PWQV++ G FCGG+L+NE++V+TAAHC +T
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVT 46
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVT 242
+ +V +S ++ ++NDI LL+L + T+ VCLP + F G GWG+T
Sbjct: 70 IAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLT 129
Query: 243 SF 244
+
Sbjct: 130 RY 131
>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
pdb|1ANE|A Chain A, Anionic Trypsin Wild Type
pdb|3FP6|E Chain E, Anionic Trypsin In Complex With Bovine Pancreatic Trypsin
Inhibitor (Bpti) Determined To The 1.49 A Resolution
Limit
Length = 223
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+NDI L++L PV L +
Sbjct: 44 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
V LP G + + GWG T S + EP LQ L+ +L A C + +
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
+ +G L D QG PV
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPV 181
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL
Sbjct: 1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 217
>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu
Length = 223
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+NDI L++L PV L +
Sbjct: 44 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
V LP G + + GWG T S + EP LQ L+ +L A C + +
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
+ +G L D QG PV
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPV 181
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL
Sbjct: 1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIV +G GCA +P P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGE----LQGIVEWGY-GCA-LPDNPGVYTKVCNYVDWIQ 217
>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|Z Chain Z, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 237
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 190 HSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEP 249
H F + SND+ LL+L +P +T T++P+ LP + E +G GWG + +
Sbjct: 85 HIRFLEYDYSNDLMLLRLSKPADITDTVKPITLPTE-EPKLGSTCLASGWGSITPTKFQF 143
Query: 250 SPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAP-DETQGTC 290
+ L + +K+L N C+ E + MLCA D + TC
Sbjct: 144 TDDLYCVNLKLLPNEDCAKAHIEKVTDAMLCAGEMDGGKDTC 185
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G + + PW VA+ + CGG LL+ ++VLTAAHC
Sbjct: 1 IVGGFKCEKNSQPWHVAVYRYTQYLCGGVLLDPNWVLTAAHC 42
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL DG VL GI S+G T C P P +YT+++++ WI
Sbjct: 189 SGGPLIC--DG--VLQGITSWGHTPCG-EPDMPGVYTKLNKFTSWI 229
>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His
Length = 223
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+NDI L++L PV L +
Sbjct: 44 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDHKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
V LP G + + GWG T S + EP LQ L+ +L A C + +
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
+ +G L D QG PV
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPV 181
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL
Sbjct: 1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 217
>pdb|1KIG|H Chain H, Bovine Factor Xa
Length = 241
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 162 LVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVC 221
+ +GD + T+ E + + V + HS F DIA+L+L P+ + P C
Sbjct: 50 FTVRVGDRN-TEQEEGNEMAHEVEMTVKHSRFVKETYDFDIAVLRLKTPIRFRRNVAPAC 108
Query: 222 LPQKGES----FIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIG 277
LP+K + K G V G+G T G S TL+ LEV + + C +I
Sbjct: 109 LPEKDWAEATLMTQKTGIVSGFGRTH-EKGRLSSTLKMLEVPYVDRSTCKLSSSFTITPN 167
Query: 278 MLCAAPD 284
M CA D
Sbjct: 168 MFCAGYD 174
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G + GE PWQ + + + FCGG +LNE +VLTAAHC+
Sbjct: 1 IVGGRDCAEGECPWQALLVNEENEGFCGGTILNEFYVLTAAHCL 44
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 364 TGGP-LTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP +T +D Y V GIVS+G GCA + +YT+VS +++WI
Sbjct: 185 SGGPHVTRFKDTYFV-TGIVSWG-EGCARKGKF-GVYTKVSNFLKWI 228
>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
Length = 245
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+NDI L++L PV L +
Sbjct: 66 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNAHVAT 124
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
V LP G + + GWG T S + EP LQ L+ +L A C + +
Sbjct: 125 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 182
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
+ +G L D QG PV
Sbjct: 183 VCVGFLEGGKDSCQGDSGGPV 203
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
+I+ G P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL
Sbjct: 22 KIVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVL 80
Query: 379 AG 380
G
Sbjct: 81 EG 82
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 199 SGGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 239
>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
pdb|1XX9|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
Length = 238
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
GV+ ++ H + DIALL+L+ V T + +P+CLP KG+ + I V GWG
Sbjct: 75 GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
+ TLQK ++ +++N C I M+CA E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
I+GG A + GE+PWQV + CGG+++ ++LTAAHC
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL+ + + L GI S+G GCA P +YT V EY+ WI
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWG-EGCA-QRERPGVYTNVVEYVDWI 231
>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGVT 242
++ ++ H ++ ++DIAL++L P+ T +P+ LP KG+ S I V GWG
Sbjct: 76 IKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGF- 134
Query: 243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEE-SIGIGMLCAAPDE 285
S GE LQK+ + +++N C ++ I M+CA E
Sbjct: 135 SKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKE 178
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 320 IILGGEADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
I+ G E+ GE+PWQV++ + CGG+L+ +VLTAAHC G PL QD +
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHC-FDGLPL---QDVWR 56
Query: 377 VLAGIV 382
+ +GI+
Sbjct: 57 IYSGIL 62
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL + +G L GI S+G GCA P +YT+V+EY+ WI
Sbjct: 188 SGGPLVCKHNGMWRLVGITSWG-EGCA-RREQPGVYTKVAEYMDWI 231
>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGVT 242
++ ++ H ++ ++DIAL++L P+ T +P+ LP KG+ S I V GWG
Sbjct: 76 IKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPISLPSKGDTSTIYTNCWVTGWGF- 134
Query: 243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEE-SIGIGMLCAAPDE 285
S GE LQK+ + +++N C ++ I M+CA E
Sbjct: 135 SKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKE 178
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
Query: 320 IILGGEADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
I+ G + GE+PWQV++ + CGG+L+ +VLTAAHC G PL QD +
Sbjct: 1 IVGGTNSSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHC-FDGLPL---QDVWR 56
Query: 377 VLAGIVS 383
+ +GI++
Sbjct: 57 IYSGILN 63
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL + +G L GI S+G GCA P +YT+V+EY+ WI
Sbjct: 188 SGGPLVCKHNGMWRLVGITSWG-EGCA-RREQPGVYTKVAEYMDWI 231
>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2
pdb|4FXG|J Chain J, Complement C4 In Complex With Masp-2
Length = 242
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 187 VLFHSHF-HPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK-GESFIGKR--GHVVGWGVT 242
V H + H NDIAL++L+ V + I P+CLP+K ESF+ G GWG+T
Sbjct: 73 VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLT 132
Query: 243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEE------SIGIGMLCA 281
G + L +++ ++ + +C+ E+ S+ MLCA
Sbjct: 133 Q--RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCA 175
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 321 ILGGE-ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
I GG+ A G+FPWQV I G GALL +++VLTAAH +
Sbjct: 1 IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAV 41
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 364 TGGPLTF---EQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
GG L F E + + V GIVS+G C Y +YT+V YI WI
Sbjct: 189 AGGALVFLDSETERWFV-GGIVSWGSMNCGEAGQY-GVYTKVINYIPWIE 236
>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 242
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 187 VLFHSHF-HPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK-GESFIGKR--GHVVGWGVT 242
V H + H NDIAL++L+ V + I P+CLP+K ESF+ G GWG+T
Sbjct: 73 VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLT 132
Query: 243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEE------SIGIGMLCA 281
G + L +++ ++ + +C+ E+ S+ MLCA
Sbjct: 133 Q--RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCA 175
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 321 ILGGE-ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
I GG+ A G+FPWQV I G GALL +++VLTAAH +
Sbjct: 1 IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAV 41
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 364 TGGPLTF---EQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GG L F E + + V GIVS+G C Y +YT+V YI WI
Sbjct: 189 SGGALVFLDSETERWFV-GGIVSWGSMNCGEAGQY-GVYTKVINYIPWIE 236
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 154 LRDTPV---SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRP 210
LRD+ + S+ + LG H + +E GV+ H + P ND+AL++L
Sbjct: 210 LRDSDLLSPSDFKIILGKHWRLRSDENEQ-HLGVKHTTLHPQYDPNTFENDVALVELLES 268
Query: 211 VPLTGTIQPVCLPQKGESFIGKRGHVVGWG---VTSFPMGEPSPTLQKLEVKVLSNARCS 267
L + P+CLP+ G G V GWG + FP TL ++E+ ++ ++ C
Sbjct: 269 PVLNAFVMPICLPE-GPQQEGAMVIVSGWGKQFLQRFP-----ETLMEIEIPIVDHSTCQ 322
Query: 268 TV---IEESIGIGMLCAAPDE 285
+++ + M+CA E
Sbjct: 323 KAYAPLKKKVTRDMICAGEKE 343
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 314 RQPRRRIILGGEADIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHCI 362
R+ +I G A G PW ++ L+G FCGG+LL +++TAAHC+
Sbjct: 150 RKLMAQIFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCL 199
>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 231
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+NDI L++L PV L +
Sbjct: 52 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 110
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
V LP G + + GWG T S + EP L+ L+ +L A C + +
Sbjct: 111 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLKCLDAPLLPQADCEASYPGKITDNM 168
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
+ +G L D QG PV
Sbjct: 169 VCVGFLEGGKDSCQGDSGGPV 189
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 332 PWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAG 380
P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL G
Sbjct: 21 PYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEG 68
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 185 SGGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 225
>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor
pdb|3TJV|A Chain A, Crystal Structure Of Human Granzyme H With A Peptidyl
Substrate
pdb|3TK9|A Chain A, Crystal Structure Of Human Granzyme H
Length = 226
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG H++ + T V+R + H ++P SN+I LLQL+R T ++P
Sbjct: 48 SSINVTLGAHNIKEQERTQQFI-PVKRPIPHPAYNPKNFSNNIMLLQLERKAKWTTAVRP 106
Query: 220 VCLP-QKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVI 270
+ LP K + G+ V GWG S M + TLQ++ + V + +C +
Sbjct: 107 LRLPSSKAQVKPGQLCSVAGWGYVS--MSTLATTLQEVLLTVQKDCQCERLF 156
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 320 IILGGEADIGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHC 361
II G EA P+ + CGG L+ + FVLTAAHC
Sbjct: 1 IIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHC 45
>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
Length = 328
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 187 VLFHSHF-HPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK-GESFIGKR--GHVVGWGVT 242
V H + H NDIAL++L+ V + I P+CLP+K ESF+ G GWG+T
Sbjct: 159 VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLT 218
Query: 243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEE------SIGIGMLCAA 282
G + L +++ ++ + +C+ E+ S+ MLCA
Sbjct: 219 Q--RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAG 262
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 310 GTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
G + R RI G +A G+FPWQV I G GALL +++VLTAAH +
Sbjct: 77 GLSARTTGGRIYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAV 127
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 364 TGGPLTF---EQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GG L F E + + V GIVS+G C Y +YT+V YI WI
Sbjct: 275 SGGALVFLDSETERWFV-GGIVSWGSMNCGEAGQY-GVYTKVINYIPWIE 322
>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human
Plasma Coagulation Factor Xi Zymogen
Length = 625
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
GV+ ++ H + DIALL+L+ V T + +P+CLP KG+ + I V GWG
Sbjct: 462 GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGY 521
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
+ TLQK ++ +++N C I M+CA E
Sbjct: 522 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 565
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 21/100 (21%)
Query: 281 AAPDETQGTCFVPVSP--------------VGYTKKHLQQFHQGTTYRQPRRRIILGGEA 326
A+ +E +G C++ +S GYT + + ++ TT +PR I+GG A
Sbjct: 337 ASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIKPR---IVGGTA 393
Query: 327 DI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCI 362
+ GE+PWQV + CGG+++ ++LTAAHC
Sbjct: 394 SVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCF 433
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL+ + + L GI S+G GCA P +YT V EY+ WI
Sbjct: 575 SGGPLSCKHNEVWHLVGITSWG-EGCA-QRERPGVYTNVVEYVDWI 618
>pdb|1H9H|E Chain E, Complex Of Eeti-Ii With Porcine Trypsin
Length = 231
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F+ L NDI L++L P L +
Sbjct: 47 SRIQVRLGEHNIDVL-EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVAT 105
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVK--VLSNARCSTVIEESIGIG 277
V LP+ + + + GWG T G P+L + +K VLS++ C + I
Sbjct: 106 VSLPRSCAAAGTECSLISGWGNTK-SSGSSYPSLLQCSLKAPVLSDSSCKSSYPGQITGN 164
Query: 278 MLC 280
M+C
Sbjct: 165 MIC 167
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ L GIVS+G GC+ + P +YT+V Y+ WI
Sbjct: 183 SGGPVVCSNG---QLQGIVSWGY-GCSAQKNKPGVYTKVCNYVNWIQ 225
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 330 EFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
P+QV++ F GG+L+N +V++AAHC
Sbjct: 12 SIPYQVSLNSGSHFCSGGSLINSQWVVSAAHC 43
>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXG|B Chain B, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXH|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXI|A Chain A, High Resolution Structure Of Human Kallikrein 7 In Complex
With Suc-Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXJ|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-ala-pro-phe-chloromethylketone And Copper
Length = 224
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 26/45 (57%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT 364
II G G PWQVA+ CGG L+NE +VLTAAHC M
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMN 45
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 13/137 (9%)
Query: 159 VSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLS----NDIALLQLDRPVPLT 214
++E +HLG L RR R S HP + ND+ L++L+ L+
Sbjct: 44 MNEYTVHLGSDTLGD-------RRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLS 96
Query: 215 GTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
++ V LP + E G V GWG T+ P L ++VK++S C+ V ++ +
Sbjct: 97 SMVKKVRLPSRCEP-PGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLL 155
Query: 275 GIGMLCAA-PDETQGTC 290
MLCA PD + C
Sbjct: 156 ENSMLCAGIPDSKKNAC 172
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL L G+VS+G C P+ P +YT+V ++ +WI+
Sbjct: 176 SGGPLVCRG----TLQGLVSWGTFPCG-QPNDPGVYTQVCKFTKWIN 217
>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal
Plasma
Length = 237
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 11/136 (8%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRR---------VLFHSHFHPFV-LSNDIALLQLDRPVPL 213
+ LG H+L++ +T+ + +L + P+ +S+D+ LL+L +P +
Sbjct: 49 IWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARI 108
Query: 214 TGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEES 273
T ++ + LP + E +G + GWG+ S S TLQ +E+++ SN +C+ E
Sbjct: 109 TDAVKILDLPTQ-EPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEK 167
Query: 274 IGIGMLCAAPDETQGT 289
+ +LCA + G+
Sbjct: 168 MTEFVLCATHRDDSGS 183
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
II G E + PWQVA+ G F CGG L++ +VLTAAHC+
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCM 43
>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|B Chain B, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|C Chain C, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
Length = 227
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 26/45 (57%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT 364
II G G PWQVA+ CGG L+NE +VLTAAHC M
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMN 45
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 13/137 (9%)
Query: 159 VSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLS----NDIALLQLDRPVPLT 214
++E +HLG L RR R S HP + ND+ L++L+ L+
Sbjct: 44 MNEYTVHLGSDTLGD-------RRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLS 96
Query: 215 GTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESI 274
++ V LP + E G V GWG T+ P L ++VK++S C+ V ++ +
Sbjct: 97 SMVKKVRLPSRCEP-PGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLL 155
Query: 275 GIGMLCAA-PDETQGTC 290
MLCA PD + C
Sbjct: 156 ENSMLCAGIPDSKKNAC 172
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL L G+VS+G C P+ P +YT+V ++ +WI+
Sbjct: 176 SGGPLVCRG----TLQGLVSWGTFPCG-QPNDPGVYTQVCKFTKWIN 217
>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl
Dipeptide Anilide Inhibitor With Elastase
pdb|4EST|E Chain E, Crystal Structure Of The Covalent Complex Formed By A
Peptidyl Alpha, Alpha-Difluoro-Beta-Keto Amide With
Porcine Pancreatic Elastase At 1.78-Angstroms Resolution
pdb|5EST|E Chain E, Crystallographic Analysis Of The Inhibition Of Porcine
Pancreatic Elastase By A Peptidyl Boronic Acid:
Structure Of A Reaction Intermediate
pdb|7EST|E Chain E, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|8EST|E Chain E, Reaction Of Porcine Pancreatic Elastase With 7-substituted
3-alkoxy-4-chloroisocoumarins: Design Of Potent
Inhibitors Using The Crystal Structure Of The Complex
Formed With 4- Chloro-3-ethoxy-7-guanidino-isocoumarin
pdb|1ELA|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELC|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELB|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELD|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1ELE|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1NES|E Chain E, Structure Of The Product Complex Of Acetyl-ala-pro-ala
With Porcine Pancreatic Elastase At 1.65 Angstroms
Resolution
pdb|1BMA|A Chain A, Benzyl Methyl Aminimide Inhibitor Complexed To Porcine
Pancreatic Elastase
pdb|1FLE|E Chain E, Crystal Structure Of Elafin Complexed With Porcine
Pancreatic Elastase
pdb|1B0E|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With Mdl
101,146
pdb|1QGF|A Chain A, Porcine Pancreatic Elastase Complexed With (3r, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One
pdb|1QIX|B Chain B, Porcine Pancreatic Elastase Complexed With Human
Beta-casomorphin-7
pdb|1QR3|E Chain E, Structure Of Porcine Pancreatic Elastase In Complex With
Fr901277, A Novel Macrocyclic Inhibitor Of Elastases At
1.6 Angstrom Resolution
pdb|1E34|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2- One Soaked In Ph 9 Buffer For One Minute
pdb|1E35|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One Soaked In Ph 9 Buffer For Two
Minutes
pdb|1E36|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One
pdb|1E37|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 1 Minute
pdb|1E38|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 2 Minutes
pdb|1HAZ|B Chain B, Snapshots Of Serine Protease Catalysis: (c) Acyl-enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-casomorphin-7 Jumped To Ph 9 For 1 Minute
pdb|1H9L|B Chain B, Porcine Pancreatic Elastase Complexed With
Acetyl-Val-Glu-Pro-Ile-Cooh
pdb|1OKX|A Chain A, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|1OKX|B Chain B, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|2FO9|A Chain A, Structure Of Porcine Pancreatic Elastase In 95% Acetone
pdb|2FOA|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010 %
BENZENE
pdb|2FOB|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010
CYCLOHEXANE
pdb|2FOC|A Chain A, Structure Of Porcine Pancreatic Elastase In 55%
Dimethylformamide
pdb|2FOD|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Ethanol
pdb|2FOE|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Hexane
pdb|2FOF|A Chain A, Structure Of Porcine Pancreatic Elastase In 80%
Isopropanol
pdb|2FOG|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2FOH|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2BD4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin- 7 And Lys-Ser At Ph 5.0
pdb|2BD5|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Lys- Ser At Ph 5 And Immersed In
Ph 9 Buffer For 30 Seconds
pdb|2BD9|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 28 Seconds (2nd Ph Jump)
pdb|2BDC|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile At
Ph 5.0
pdb|2H1U|A Chain A, Porcine Pancreatic Elastase Complexed With Metpheleuglu At
Ph 5.0
pdb|1BTU|A Chain A, Porcine Pancreatic Elastase Complexed With (3s, 4r)-1-
Toluenesulphonyl-3-Ethyl-Azetidin-2-One-4-Carboxylic
Acid
pdb|1EAS|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 3.
Design, Synthesis, X-Ray Crystallographic Analysis, And
Structure-Activity Relationships For A Series Of Orally
Active 3-Amino-6-Phenylpyridin- 2-One Trifluoromethyl
Ketones
pdb|1EAT|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 5.
Design, Synthesis, And X-Ray Crystallography Of A Series
Of Orally Active 5- Amino-Pyrimidin-6-One-Containing
Trifluoromethylketones
pdb|1EAU|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 6.
Design Of A Potent, Intratracheally Active,
Pyridone-Based Trifluoromethyl Ketone
pdb|1ELF|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ELG|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ESA|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|1EST|A Chain A, The Atomic Structure Of Crystalline Porcine Pancreatic
Elastase At 2.5 Angstroms Resolution. Comparisons With
The Structure Of Alpha- Chymotrypsin
pdb|1INC|A Chain A, Crystal Structures Of The Complex Of Porcine Pancreatic
Elastase With Two Valine-Derived Benzoxazinone
Inhibitors
pdb|1JIM|A Chain A, Stereospecific Reaction Of 3-Methoxy-4-Chloro-7-
Aminoisocoumarin With Crystalline Porcine Pancreatic
Elastase
pdb|1LVY|A Chain A, Porcine Elastase
pdb|3EST|A Chain A, Structure Of Native Porcine Pancreatic Elastase At 1.65
Angstroms Resolution
pdb|6EST|A Chain A, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|9EST|A Chain A, Structural Study Of Porcine Pancreatic Elastase Complexed
With 7- Amino-3-(2-Bromoethoxy)-4-Chloroisocoumarin As A
Nonreactivatable Doubly Covalent Enzyme-Inhibitor
Complex
pdb|1GVK|B Chain B, Porcine Pancreatic Elastase Acyl Enzyme At 0.95 A
Resolution
pdb|3E3T|A Chain A, Structure Of Porcine Pancreatic Elastase With The Magic
Triangle I3c
pdb|3MNB|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. First Stage Of
Radiation Damage
pdb|3MNC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Second Stage Of
Radiation Damage
pdb|3MNS|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Third Stage Of
Radiation Damage
pdb|3MNX|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fourth Stage Of
Radiation Damage
pdb|3MO3|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fifth Stage Of
Radiation Damage
pdb|3MO6|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Sixth Stage Of
Radiation Damage
pdb|3MO9|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Seventh Stage Of
Radiation Damage
pdb|3MOC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Eighth Stage Of
Radiation Damage
pdb|3MTY|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. First Step Of Radiation
Damage
pdb|3MU0|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU1|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3MU4|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. First Step Of Radiation
Damage
pdb|3MU5|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU8|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3ODD|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Second Step Of Radiation
Damage
pdb|3ODF|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Second Step Of Radiation
Damage
pdb|2BB4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Asp- Phe At Ph 5.0
pdb|2BD2|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0
pdb|2BD3|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Lys- Ala-nh2 At Ph 5.0
pdb|2BD7|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
pdb|2BD8|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 30 Seconds
pdb|2BDA|A Chain A, Porcine Pancreatic Elastase Complexed With N-Acetyl-Npi
And Ala-Ala At Ph 5.0
pdb|2BDB|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile And
Ala-ala At Ph 5.0
pdb|1ESB|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|4GVU|A Chain A, Lyngbyastatin 7-porcine Pancreatic Elastase Co-crystal
Structure
Length = 240
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHP--FVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+G+H+L Q N T GV++++ H +++ DIALL+L + V L +Q LP
Sbjct: 57 VGEHNLNQNNGTEQYV-GVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLP 115
Query: 224 QKGESFIGKR-GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC--STVIEESIGIGMLC 280
+ G ++ GWG+T G+ + TLQ+ + + A C S+ ++ M+C
Sbjct: 116 RAGTILANNSPCYITGWGLTR-TNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVC 174
Query: 281 AAPDETQGTC 290
A D + C
Sbjct: 175 AGGDGVRSGC 184
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 320 IILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCI 362
++ G EA +P Q+++ CGG L+ +++V+TAAHC+
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCV 47
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSY-GVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL +G + + G+ S+ GC + P ++TRVS YI WI+
Sbjct: 188 SGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRK-PTVFTRVSAYISWIN 234
>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|B Chain B, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|D Chain D, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 251
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 154 LRDTPV---SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRP 210
LRD+ + S+ + LG H + +E GV+ H + P ND+AL++L
Sbjct: 55 LRDSDLLSPSDFKIILGKHWRLRSDENEQ-HLGVKHTTLHPQYDPNTFENDVALVELLES 113
Query: 211 VPLTGTIQPVCLPQKGESFIGKRGHVVGWG---VTSFPMGEPSPTLQKLEVKVLSNARCS 267
L + P+CLP+ G G V GWG + FP TL ++E+ ++ ++ C
Sbjct: 114 PVLNAFVMPICLPE-GPQQEGAMVIVSGWGKQFLQRFP-----ETLMEIEIPIVDHSTCQ 167
Query: 268 TV---IEESIGIGMLCAAPDE 285
+++ + M+CA E
Sbjct: 168 KAYAPLKKKVTRDMICAGEKE 188
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHCI 362
I G A G PW ++ L+G FCGG+LL +++TAAHC+
Sbjct: 1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCL 44
>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With
Benzamidine
Length = 220
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S L + LG+H + ++NE + V+ H ++ + ++NDI L++L +P L +
Sbjct: 44 SVLRVRLGEHHI-RVNEGTEQYISSSSVIRHPNYSSYNINNDIMLIKLTKPATLNQYVHA 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
V LP + + V GWG T + + LQ L + +LS+A C+ I M
Sbjct: 103 VALPTECAAD-ATMCTVSGWGNTMSSVAD-GDKLQCLSLPILSHADCANSYPGMITQSMF 160
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 161 CAGYLEGGKDSCQGDSGGPV 180
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 341 GMFFCGGALLNEHFVLTAAHC 361
G FCGG+L+++ +V++AAHC
Sbjct: 21 GYHFCGGSLVSKDWVVSAAHC 41
>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|1TRM|B Chain B, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|2TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
Length = 223
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+N+I L++L PV L +
Sbjct: 44 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
V LP G + + GWG T S + EP LQ L+ +L A C + +
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
+ +G L D QG PV
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPV 181
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL
Sbjct: 1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 217
>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|H Chain H, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|F Chain F, Thrombin:hirudin 51-65 Complex
pdb|1YCP|K Chain K, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 150
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 159 VSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFH-PFVLSNDIALLQLDRPVPLTGTI 217
V +L++ +G H T+ + ++ H ++ L DIALL+L RP+ L+ I
Sbjct: 56 VDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYI 115
Query: 218 QPVCLPQKGES----FIGKRGHVVGWG 240
PVCLP K + G +G V GWG
Sbjct: 116 HPVCLPDKQTAAKLLHAGFKGRVTGWG 142
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A++G PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With
The Protein Inhibitors Appi And Bpti
pdb|1BRC|E Chain E, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
pdb|1BRA|A Chain A, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
Length = 223
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+NDI L++L PV L +
Sbjct: 44 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
V LP G + + GWG T S + EP LQ L+ +L A C I M
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 279 LC 280
+C
Sbjct: 161 VC 162
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIVS+G GCA +P PD+YT+V Y+ WI
Sbjct: 177 SGGPVVCNGE----LQGIVSWGY-GCA-LPDNPDVYTKVCNYVDWIQ 217
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL
Sbjct: 1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|A Chain A, Factor Xa - Cation Inhibitor Complex
Length = 234
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ +GD + T+ E V V+ H+ F DIA+L+L P+ + P CLP
Sbjct: 52 VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
++ ES + K G V G+G T GE S L+ LEV + C I M
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
CA D Q
Sbjct: 170 CAGYDTKQ 177
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G E GE PWQ + I + FCGG +L+E ++LTAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 364 TGGP-LTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP +T +D Y V GIVS+G GCA Y +YT+V+ +++WI
Sbjct: 185 SGGPHVTRFKDTYFV-TGIVSWG-EGCARKGKY-GIYTKVTAFLKWI 228
>pdb|2BOK|A Chain A, Factor Xa- Cation
pdb|2JKH|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|A Chain A, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ +GD + T+ E V V+ H+ F DIA+L+L P+ + P CLP
Sbjct: 52 VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
++ ES + K G V G+G T GE S L+ LEV + C I M
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
CA D Q
Sbjct: 170 CAGYDTKQ 177
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G E GE PWQ + I + FCGG +L+E ++LTAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 364 TGGP-LTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP +T +D Y V GIVS+G GCA Y +YT+V+ +++WI
Sbjct: 185 SGGPHVTRFKDTYFV-TGIVSWG-EGCARKGKY-GIYTKVTAFLKWI 228
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 317 RRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYH 376
R+RI+ G A +G+ PWQVAI CGG + ++LTAAHC+ + Y
Sbjct: 319 RKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRAS-----KTHRYQ 373
Query: 377 VLAGIVSYGVTGCAIMPSYPDLYTRVSEYI 406
+ +V + +PDL V EY+
Sbjct: 374 IWTTVVDW---------IHPDLKRIVIEYV 394
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQL-----DRPVPLTGTIQPVCLPQKGESFIGKRGHVV- 237
V R++FH +++ NDIAL+++ + L +I P C+P F +V
Sbjct: 394 VDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSI-PACVPWSPYLFQPNDTCIVS 452
Query: 238 GWGVTSFPMGEPSPTLQKLEVKVLSNA 264
GWG E +LQ EVK++SN
Sbjct: 453 GWGREK--DNERVFSLQWGEVKLISNC 477
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 364 TGGPL-TFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL + + + G+VS+G C P +P +YT+V+ Y WI
Sbjct: 507 SGGPLVCMDANNVTYVWGVVSWG-ENCG-KPEFPGVYTKVANYFDWI 551
>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine (S434a-T475a-K505
Mutant)
Length = 238
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
GV+ ++ H + DIALL+L+ V + +P+CLP KG+ + I V GWG
Sbjct: 75 GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
+ + TLQK ++ +++N C I M+CA E
Sbjct: 135 RAL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
I+GG A + GE+PWQV + CGG+++ ++LTAAHC
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL+ + + L GI S+G GCA P +YT V EY+ WI
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWG-EGCA-QRERPGVYTNVVEYVDWI 231
>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99rt
pdb|1J14|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99rt
Length = 223
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F +NDI L++L PV L +
Sbjct: 44 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
V LP G + + GWG T S + EP LQ L+ +L A C + +
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
+ +G L D QG PV
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPV 181
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL
Sbjct: 1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 217
>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
pdb|1AMH|B Chain B, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
Length = 223
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+NDI L++L PV L +
Sbjct: 44 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
V LP G + + GWG T S + EP LQ L+ +L A C I M
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 279 LC 280
+C
Sbjct: 161 VC 162
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL
Sbjct: 1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 217
>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-2
Length = 403
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 187 VLFHSHF-HPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK-GESFIGKR--GHVVGWGVT 242
V H + H NDIAL++L+ V + I P+CLP+K ESF+ G GWG+T
Sbjct: 234 VFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLT 293
Query: 243 SFPMGEPSPTLQKLEVKVLSNARCSTVIEE------SIGIGMLCA 281
G + L +++ ++ + +C+ E+ S+ MLCA
Sbjct: 294 Q--RGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCA 336
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 310 GTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
G + R +I G +A G+FPWQV I G GALL +++VLTAAH +
Sbjct: 152 GLSARTTGGQIYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAV 202
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 364 TGGPLTF---EQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GG L F E + + V GIVS+G C Y +YT+V YI WI
Sbjct: 350 SGGALVFLDSETERWFV-GGIVSWGSMNCGEAGQY-GVYTKVINYIPWIE 397
>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Complement C1s Protease
Length = 333
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 6/52 (11%)
Query: 314 RQP---RRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
R+P ++RII G +ADI FPWQV + GGAL+NE++VLTAAH +
Sbjct: 74 REPFEEKQRIIGGSDADIKNFPWQVFFDNP---WAGGALINEYWVLTAAHVV 122
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 198 LSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI---GKRGHVVGWGVT 242
NDIAL++L PV + T+ P+CLP + G G + GWG T
Sbjct: 171 FDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRT 218
>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZS|D Chain D, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZU|C Chain C, Ecotin Y69f, D70p Bound To D102n Trypsin
pdb|1EZU|D Chain D, Ecotin Y69f, D70p Bound To D102n Trypsin
Length = 223
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E +++ H +F L+N+I L++L PV L +
Sbjct: 44 SRIQVRLGEHNINVL-EGDEQFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
V LP G + + GWG T S + EP LQ L+ +L A C + +
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASYPGKITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
+ +G L D QG PV
Sbjct: 161 VCVGFLEGGKDSCQGDSGGPV 181
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL
Sbjct: 1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 217
>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1QFK|H Chain H, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
pdb|1CVW|H Chain H, Crystal Structure Of Active Site-inhibited Human
Coagulation Factor Viia (des-gla)
pdb|1FAK|H Chain H, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1DVA|H Chain H, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|I Chain I, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1JBU|H Chain H, Coagulation Factor Vii Zymogen (Egf2PROTEASE) IN COMPLEX
WITH Inhibitory Exosite Peptide A-183
pdb|1KLI|H Chain H, Cofactor-And Substrate-Assisted Activation Of Factor Viia
pdb|1KLJ|H Chain H, Crystal Structure Of Uninhibited Factor Viia
pdb|1J9C|H Chain H, Crystal Structure Of Tissue Factor-Factor Viia Complex
pdb|1W0Y|H Chain H, Tf7a_3771 Complex
pdb|1YGC|H Chain H, Short Factor Viia With A Small Molecule Inhibitor
pdb|1Z6J|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|1W2K|H Chain H, Tf7a_4380 Complex
pdb|1WQV|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1W7X|H Chain H, Factor7- 413 Complex
pdb|1W8B|H Chain H, Factor7 - 413 Complex
pdb|1WSS|H Chain H, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|H Chain H, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2B7D|H Chain H, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|H Chain H, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|H Chain H, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2A2Q|H Chain H, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AER|H Chain H, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2AEI|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2FIR|H Chain H, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|H Chain H, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2FLR|H Chain H, Novel 5-azaindole Factor Viia Inhibitors
pdb|2B8O|H Chain H, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2PUQ|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
pdb|2EC9|H Chain H, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|2ZP0|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|H Chain H, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
pdb|3TH2|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|1O5D|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2BZ6|H Chain H, Orally Available Factor7a Inhibitor
pdb|4ISI|H Chain H, Structure Of Factor Viia In Complex With The Inhibitor
(6s)-n-(4-
Carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,
8-diethyl-4-oxo-
4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
Length = 254
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 20/144 (13%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
L+ LG+HDL++ + RR V +V+ S + P ++DIALL+L +PV LT + P+
Sbjct: 51 NLIAVLGEHDLSEHDGDEQSRR-VAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPL 109
Query: 221 CLPQKGES-----FIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIG 275
CLP++ S F+ + V GWG G + L L V L C +++S
Sbjct: 110 CLPERTFSERTLAFV-RFSLVSGWG-QLLDRGATALELMVLNVPRLMTQDC---LQQSRK 164
Query: 276 IG--------MLCAA-PDETQGTC 290
+G M CA D ++ +C
Sbjct: 165 VGDSPNITEYMFCAGYSDGSKDSC 188
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 321 ILGGE-ADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+GG+ GE PWQV + ++G CGG L+N +V++AAHC
Sbjct: 1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCF 43
>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J16|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J17|T Chain T, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99175190RT
Length = 223
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F +NDI L++L PV L +
Sbjct: 44 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCST-----VIEES 273
V LP G + + GWG T S + EP LQ L+ +L A C + +
Sbjct: 103 VALPSSCAP-AGTQCLISGWGNTLSSGVNEPD-LLQCLDAPLLPQADCEASSSFIITDNM 160
Query: 274 IGIGMLCAAPDETQGTCFVPV 294
+ +G L D QG PV
Sbjct: 161 VCVGFLEGGKDACQGDSGGPV 181
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL
Sbjct: 1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 217
>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1EAI|B Chain B, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1C1M|A Chain A, Porcine Elastase Under Xenon Pressure (8 Bar)
pdb|1HV7|A Chain A, Porcine Pancreatic Elastase Complexed With Gw311616a
pdb|1FZZ|A Chain A, The Crystal Structure Of The Complex Of Non-Peptidic
Inhibitor Ono-6818 And Porcine Pancreatic Elastase.
pdb|1GWA|A Chain A, Triiodide Derivative Of Porcine Pancreas Elastase
pdb|1L0Z|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Dry Paraffin
Oil
pdb|1L1G|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Glycerol
pdb|1LKA|A Chain A, Porcine Pancreatic ElastaseCA-Complex
pdb|1LKB|A Chain A, Porcine Pancreatic Elastase/na-complex
pdb|1MMJ|N Chain N, Porcine Pancreatic Elastase Complexed With A Potent
Peptidyl Inhibitor, Fr136706
pdb|1MCV|A Chain A, Crystal Structure Analysis Of A Hybrid Squash Inhibitor In
Complex With Porcine Pancreatic Elastase
pdb|1UO6|A Chain A, Porcine Pancreatic ElastaseXE-Complex
pdb|1UVO|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(crystal A)
pdb|1UVP|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(Crystal B)
pdb|2A7C|A Chain A, On The Routine Use Of Soft X-rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2A7J|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2BLO|A Chain A, Elastase Before A High Dose X-Ray "burn"
pdb|2BLQ|A Chain A, Elastase After A High Dose X-Ray "burn"
pdb|2D26|C Chain C, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
pdb|2CV3|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With A Macroclyclic Peptide Inhibitor
pdb|2DE8|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With A
Unique Conformation Induced By Tris
pdb|2DE9|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With Tris After Soaking A Tris-Free Solution
pdb|2G4T|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastase (na)
pdb|2G4U|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastaase
(ca)
pdb|2OQU|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1QNJ|A Chain A, The Structure Of Native Porcine Pancreatic Elastase At
Atomic Resolution (1.1 A)
pdb|2IOT|A Chain A, Clavulanic Acid Bound To Elastase
pdb|2V0B|A Chain A, Sad Structure Solution Porcine Pancreatic Elastase From A
Selenate Derivative
pdb|2V35|A Chain A, Porcine Pancreatic Elastase In Complex With Inhibitor Jm54
pdb|3HGP|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By High
Resolution Crystallography
pdb|3HGN|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By Neutron
Crystallography
pdb|3UOU|A Chain A, Crystal Structure Of The Kunitz-Type Protease Inhibitor
Shpi-1 Lys13leu Mutant In Complex With Pancreatic
Elastase
Length = 240
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHP--FVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+G+H+L Q N+ + GV++++ H +++ DIALL+L + V L +Q LP
Sbjct: 57 VGEHNLNQ-NDGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLP 115
Query: 224 QKGESFIGKR-GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC--STVIEESIGIGMLC 280
+ G ++ GWG+T G+ + TLQ+ + + A C S+ ++ M+C
Sbjct: 116 RAGTILANNSPCYITGWGLTR-TNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVC 174
Query: 281 AAPDETQGTC 290
A D + C
Sbjct: 175 AGGDGVRSGC 184
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 320 IILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCI 362
++ G EA +P Q+++ CGG L+ +++V+TAAHC+
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCV 47
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSY-GVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL +G + + G+ S+ GC + P ++TRVS YI WI+
Sbjct: 188 SGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRK-PTVFTRVSAYISWIN 234
>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXD|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXF|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
pdb|1XXF|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
Length = 238
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
GV+ ++ H + DIALL+L+ V + +P+CLP KG+ + I V GWG
Sbjct: 75 GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
+ TLQK ++ +++N C I M+CA E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
I+GG A + GE+PWQV + CGG+++ ++LTAAHC
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL+ + + L GI S+G GCA P +YT V EY+ WI
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWG-EGCA-QRERPGVYTNVVEYVDWI 231
>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
pdb|1NPM|B Chain B, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
Length = 225
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 164 LHLGDHDLT---QLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
+ LGDH L Q + V + ++ +++ +P S+DI L++L L ++PV
Sbjct: 49 VRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNS-NPEDHSHDIMLIRLQNSANLGDKVKPV 107
Query: 221 CLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLC 280
L +G++ + GWG + P TL EVK+ S +C I GM+C
Sbjct: 108 QLANLCPK-VGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVC 166
Query: 281 AAPDETQGTC 290
A TC
Sbjct: 167 AGSSNGADTC 176
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G E PWQ A+ CGG L+ + +VLTAAHC
Sbjct: 1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHC 42
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL DG +L GI S+G C P P +YT++ Y WI
Sbjct: 180 SGGPLVC--DG--MLQGITSWGSDPCG-KPEKPGVYTKICRYTTWI 220
>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Coagulation Factor Xia In Complex With Benzamidine
(s434a- T475a-k437 Mutant)
Length = 238
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
GV+ ++ H + DIALL+L+ V + +P+CLP KG+ + I V GWG
Sbjct: 75 GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
+ TLQK ++ +++N C I M+CA E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
I+GG A + GE+PWQV + CGG+++ ++LTAAHC
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL+ + + L GI S+G GCA P +YT V EY+ WI
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWG-EGCA-QRERPGVYTNVVEYVDWI 231
>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With
D-Phe-Pro-Arg- Chloromethylketone
Length = 228
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 7/136 (5%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ +GD + T+ E V V+ H+ F DIA+L+L P+ + P LP
Sbjct: 52 VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLP 110
Query: 224 QKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLC--- 280
+ G + + GWG T+ + LQ L+ VLS A+C I M C
Sbjct: 111 TAPPA-TGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGF 169
Query: 281 --AAPDETQGTCFVPV 294
D QG PV
Sbjct: 170 LEGGKDSCQGDSGGPV 185
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G GE PWQ + I + FCGG +L+E ++LTAAHC+
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCL 44
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L G+VS+G GCA + P +YT+V Y++WI
Sbjct: 181 SGGPVVCNGQ----LQGVVSWG-DGCA-QKNKPGVYTKVYNYVKWI 220
>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
pdb|1TRN|B Chain B, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
Length = 224
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H + L+NDI L++L + +
Sbjct: 44 SRIQVRLGEHNIEVL-EGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINARVST 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP + G + + GWG T+ + LQ L+ VLS A+C I M
Sbjct: 103 ISLPTAPPA-TGTKCLISGWGNTASSGADXPDELQCLDAPVLSQAKCEASYPGKITSNMF 161
Query: 280 C-----AAPDETQGTCFVPV 294
C D QG PV
Sbjct: 162 CVGFLEGGKDSCQGDSGGPV 181
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G + P+QV++ G FCGG+L+NE +V++A HC + + + VL
Sbjct: 1 IVGGYNCEENSVPYQVSLN-SGYHFCGGSLINEQWVVSAGHCYKSRIQVRLGEHNIEVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L G+VS+G GCA + P +YT+V Y++WI
Sbjct: 177 SGGPVVCNGQ----LQGVVSWG-DGCA-QKNKPGVYTKVYNYVKWI 216
>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 At Ph 5
pdb|1HAY|B Chain B, Snapshots Of Serine Protease Catalysis: (B) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 10 Seconds
pdb|1HB0|B Chain B, Snapshots Of Serine Protease Catalysis: (D) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 2 Minutes
Length = 240
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHP--FVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+G+H+L Q N T GV++++ H +++ DIALL+L + V L +Q LP
Sbjct: 57 VGEHNLNQNNGTEQYV-GVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLP 115
Query: 224 QKGESFIGKR-GHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC--STVIEESIGIGMLC 280
+ G ++ GWG+T G+ + TLQ+ + + A C S+ ++ M+C
Sbjct: 116 RAGTILRNNSPCYITGWGLTR-TNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVC 174
Query: 281 AAPDETQGTC 290
A D + C
Sbjct: 175 AGGDGVRSGC 184
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 320 IILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCI 362
++ G EA +P Q+++ CGG L+ +++V+TAAHC+
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCV 47
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSY-GVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL +G + + G+ S+ GC + P ++TRVS YI WI+
Sbjct: 188 SGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRK-PTVFTRVSAYISWIN 234
>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
pdb|1AO5|B Chain B, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
Length = 237
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 159 VSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVL-----------SNDIALLQL 207
V + + LG + L Q E S R V + H F+ +L S+D+ LL+L
Sbjct: 44 VDQYEVWLGKNKLFQ-EEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRL 102
Query: 208 DRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS 267
+P +T ++P+ LP K E G + GWG + + LQ + + +L N C+
Sbjct: 103 SKPADITDVVKPIALPTK-EPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCA 161
Query: 268 TVIEESIGIGMLCAA 282
V + + MLCA
Sbjct: 162 KVYLQKVTDVMLCAG 176
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
++ G + PWQVA+ CGG LL+ ++VLTAAHC
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHC 42
>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii
Transmembrane Serine Proteinases Family
Length = 232
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT 364
I+ G E + GE+PWQ ++ DG CG L+N ++++AAHC T
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTT 45
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 178 SHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI-GKRGHV 236
S ++RG+RR++ H + DI+L +L PVP T + VCLP F G V
Sbjct: 63 SKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFV 122
Query: 237 VGWGVTSFPMGEPSPTLQKLEVKVLSNARCS--TVIEESIGIGMLCA 281
G+G G L++ +V ++ C+ ++I MLCA
Sbjct: 123 TGFGALKND-GYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCA 168
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 19/122 (15%)
Query: 289 TCFVPVSPVGYTKKHLQQFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDGMFFCGGA 348
T F + GY++ HL RQ + +I +A P A+ C G+
Sbjct: 123 TGFGALKNDGYSQNHL---------RQAQVTLI---DATTCNEPQAYNDAITPRMLCAGS 170
Query: 349 LLNEHFVLTAAHCIMTGGPL-TFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIR 407
L + T A +GGPL + + LAGIVS+G CA P+ P +YTRV+
Sbjct: 171 LEGK----TDACQGDSGGPLVSSDARDIWYLAGIVSWG-DECA-KPNKPGVYTRVTALRD 224
Query: 408 WI 409
WI
Sbjct: 225 WI 226
>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|B Chain B, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|C Chain C, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|D Chain D, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2FWW|A Chain A, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|B Chain B, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|C Chain C, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|D Chain D, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FXR|A Chain A, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|B Chain B, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|C Chain C, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|D Chain D, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FPZ|A Chain A, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|B Chain B, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|C Chain C, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|D Chain D, Human Tryptase With 2-Amino Benzimidazole
pdb|2FS8|A Chain A, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|B Chain B, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|C Chain C, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|D Chain D, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS9|A Chain A, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|B Chain B, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|C Chain C, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|D Chain D, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2GDD|A Chain A, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|B Chain B, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|C Chain C, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|D Chain D, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2ZA5|A Chain A, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|B Chain B, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|C Chain C, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|D Chain D, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|4A6L|A Chain A, Beta-Tryptase Inhibitor
pdb|4A6L|B Chain B, Beta-Tryptase Inhibitor
pdb|4A6L|C Chain C, Beta-Tryptase Inhibitor
pdb|4A6L|D Chain D, Beta-Tryptase Inhibitor
pdb|3V7T|A Chain A, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|B Chain B, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|C Chain C, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|D Chain D, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
Length = 245
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCI 362
I+ G EA ++PWQV++ + G M FCGG+L++ +VLTAAHC+
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCV 46
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVT 242
V R++ H F+ + DIALL+L+ PV ++ + V LP E+F G V GWG
Sbjct: 74 VSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDV 133
Query: 243 SFPMGEPSP-TLQKLEVKVLSNARCST 268
P P L++++V ++ N C
Sbjct: 134 DNDERLPPPFPLKQVKVPIMENHICDA 160
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL + +G + AG+VS+G GCA P+ P +YTRV+ Y+ WIH
Sbjct: 194 SGGPLVCKVNGTWLQAGVVSWG-EGCA-QPNRPGIYTRVTYYLDWIH 238
>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|B Chain B, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|C Chain C, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|D Chain D, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
Length = 244
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCI 362
I+ G EA ++PWQV++ + G M FCGG+L++ +VLTAAHC+
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCV 46
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVT 242
V R++ H F+ + DIALL+L+ PV ++ + V LP E+F G V GWG
Sbjct: 74 VSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDV 133
Query: 243 SFPMGEPSP-TLQKLEVKVLSNARCST 268
P P L++++V ++ N C
Sbjct: 134 DNDERLPPPFPLKQVKVPIMENHICDA 160
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL + +G + AG+VS+G GCA P+ P +YTRV+ Y+ WIH
Sbjct: 194 SGGPLVCKVNGTWLQAGVVSWG-EGCA-QPNRPGIYTRVTYYLDWIH 238
>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Zinc-Bound
pdb|1SLV|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Copper- Bound
pdb|1SLU|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin
Length = 223
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+NDI L++L PV L +
Sbjct: 44 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST-----VIEESI 274
V LP G + + GWG T LQ L+ +L A C + + +
Sbjct: 103 VALPSSCAP-AGTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEASYPGKITDNMV 161
Query: 275 GIGMLCAAPDETQGTCFVPV 294
+G L D QG PV
Sbjct: 162 CVGFLEGGKDSCQGDSGGPV 181
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL
Sbjct: 1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 217
>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|B Chain B, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|C Chain C, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|D Chain D, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
Length = 235
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 316 PRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
PR RI+ G EA+ P+ ++ L+G CGG L+ E +VL+AAHC+
Sbjct: 4 PRGRILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCL 50
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Query: 138 KVNLARKVGGVCDIDQ--------LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLF 189
++N A GGV +Q L D ++ + LG H L+Q E S V R +
Sbjct: 26 QLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQ-PEPSKRLYDVLRAVP 84
Query: 190 HSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI-GKRGHVVGWGVTSFPMGE 248
H P + +D+ LLQL L ++P+ + G V GWG+ +
Sbjct: 85 HPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRR 144
Query: 249 PSPTLQKLEVKVLSNARCS--TVIEESIGIGMLCA 281
P +LQ + + VL A C+ T + +I ++CA
Sbjct: 145 PD-SLQHVLLPVLDRATCNRRTHHDGAITERLMCA 178
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL VL G+V+ G C P +YTRV+ Y WI
Sbjct: 190 SGGPLVCGG----VLEGVVTSGSRVCGNR-KKPGIYTRVASYAAWI 230
>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
Length = 243
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCI 362
I+ G EA ++PWQV++ + G M FCGG+L++ +VLTAAHC+
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCV 46
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVT 242
V R++ H F+ + DIALL+L+ PV ++ + V LP E+F G V GWG
Sbjct: 74 VSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDV 133
Query: 243 SFPMGEPSP-TLQKLEVKVLSNARCST 268
P P L++++V ++ N C
Sbjct: 134 DNDERLPPPFPLKQVKVPIMENHICDA 160
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL + +G + AG+VS+G GCA P+ P +YTRV+ Y+ WIH
Sbjct: 194 SGGPLVCKVNGTWLQAGVVSWG-EGCA-QPNRPGIYTRVTYYLDWIH 238
>pdb|3H7T|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-D1 (Smipp-S-D1)
pdb|3H7T|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-D1 (Smipp-S-D1)
Length = 235
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
II G ++DI + PW V + +D FCGG++L +FV+TAA C+
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCV 43
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 17/117 (14%)
Query: 157 TPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL--- 213
T S++ +H G T + ++ ++ +HP + N+ A+++ + P+ L
Sbjct: 46 TKPSDISIHYGSSYRTTKGTSVMAKK-----IYIVRYHPLTMQNNYAVIETEMPIKLDDK 100
Query: 214 -TGTIQ-PVCL--PQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC 266
T I+ P L P+ S + V GWG T+F E S L + V+ C
Sbjct: 101 TTKKIELPSLLYDPEPDTSVL-----VSGWGSTNFKSLEYSGDLMEANFTVVDRKSC 152
>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
pdb|2RA3|B Chain B, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
Length = 224
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H + L+NDI L++L + +
Sbjct: 44 SRIQVRLGEHNIEVL-EGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINAHVST 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP + G + + GWG T+ + LQ L+ VLS A+C I M
Sbjct: 103 ISLPTAPPA-TGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMF 161
Query: 280 C-----AAPDETQGTCFVPV 294
C D QG PV
Sbjct: 162 CVGFLEGGKDSCQGDAGGPV 181
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G + P+QV++ G FCGG+L+NE +V++A HC + + + VL
Sbjct: 1 IVGGYNCEENSVPYQVSLN-SGYHFCGGSLINEQWVVSAGHCYKSRIQVRLGEHNIEVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
GGP+ L G+VS+G GCA + P +YT+V Y++WI
Sbjct: 177 AGGPVVCNGQ----LQGVVSWG-DGCA-QKNKPGVYTKVYNYVKWI 216
>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With
Clavatadine A
Length = 238
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
GV+ ++ H + DIALL+L+ V T + +P+ LP KGE + I V GWG
Sbjct: 75 GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
+ TLQK ++ +++N C I M+CA E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
I+GG A + GE+PWQV + CGG+++ ++LTAAHC
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL+ + + L GI S+G GCA P +YT V EY+ WI
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWG-EGCA-QRERPGVYTNVVEYVDWI 231
>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Nickel- Bound
Length = 223
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F L+NDI L++L PV L +
Sbjct: 44 SRIQVRLGEHNINVL-EGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST-----VIEESI 274
+ LP G + + GWG T LQ L+ +L A C + + +
Sbjct: 103 IALPSSCAP-AGTQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEASYPGKITDNMV 161
Query: 275 GIGMLCAAPDETQGTCFVPV 294
+G L D QG PV
Sbjct: 162 CVGFLEGGKDSCQGDSGGPV 181
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N+ +V++AAHC + + + +VL
Sbjct: 1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ + L GIVS+G GCA +P P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGE----LQGIVSWGY-GCA-LPDNPGVYTKVCNYVDWIQ 217
>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
pdb|1EQ9|B Chain B, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
Length = 222
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G +A +G++P+QV++ L G CG ++L+ + VLTAAHC+ G + HV
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCV--DGLSNLNRLKVHVGT 58
Query: 380 GIVS-----YGVTGCAIMPSYPDLYTR 401
+S Y V + +Y D R
Sbjct: 59 NYLSESGDVYDVEDAVVNKNYDDFLLR 85
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Query: 157 TPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGT 216
+ ++ L +H+G + L++ + V V + ++ F+L ND+AL+ L P+
Sbjct: 47 SNLNRLKVHVGTNYLSESGDVYDVEDAV----VNKNYDDFLLRNDVALVHLTNPIKFNDL 102
Query: 217 IQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS----TVIEE 272
+QP+ L E + GWG T P+ LQ++E+ V +C VI+
Sbjct: 103 VQPIKLSTNDEDLESNPCTLTGWGSTRLGGNTPN-ALQEIELIVHPQKQCERDQWRVIDS 161
Query: 273 SIGIGMLCAAPDETQGTC 290
I C +G C
Sbjct: 162 HI-----CTLTKRGEGAC 174
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN 412
+GGPL +G + GIVS+G + CA+ PD+YTRVS ++ WI+ N
Sbjct: 178 SGGPLV--ANGAQI--GIVSFG-SPCAL--GEPDVYTRVSSFVSWINAN 219
>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|D Chain D, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1G2L|A Chain A, Factor Xa Inhibitor Complex
pdb|1G2M|A Chain A, Factor Xa Inhibitor Complex
pdb|1IOE|A Chain A, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|A Chain A, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|A Chain A, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|A Chain A, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|A Chain A, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|A Chain A, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|A Chain A, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|A Chain A, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|A Chain A, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|A Chain A, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|A Chain A, Human Coagulation Factor Xa In Complex With M55192
pdb|2P3F|H Chain H, Crystal Structure Of The Factor XaNAP5 COMPLEX
Length = 235
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ +GD + T+ E V V+ H+ F DIA+L+L P+ + P CLP
Sbjct: 52 VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
++ ES + K G V G+G T G S L+ LEV + C I M
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
CA D Q
Sbjct: 170 CAGYDTKQ 177
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G E GE PWQ + I + FCGG +L+E ++LTAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 364 TGGP-LTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP +T +D Y V GIVS+G GCA Y +YT+V+ +++WI
Sbjct: 185 SGGPHVTRFKDTYFV-TGIVSWG-EGCARKGKY-GIYTKVTAFLKWI 228
>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1Z6E|A Chain A, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
pdb|2BMG|B Chain B, Crystal Structure Of Factor Xa In Complex With 50
pdb|2FZZ|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|A Chain A, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|A Chain A, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2PR3|A Chain A, Factor Xa Inhibitor
pdb|2Q1J|A Chain A, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2P16|A Chain A, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2RA0|A Chain A, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
pdb|2PHB|A Chain A, An Orally Efficacious Factor Xa Inhibitor
pdb|3CEN|A Chain A, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|A Chain A, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|2W26|A Chain A, Factor Xa In Complex With Bay59-7939
pdb|2W3I|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3FFG|A Chain A, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|A Chain A, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|A Chain A, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|A Chain A, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5-
Ox Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3LIW|A Chain A, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
pdb|3M36|A Chain A, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|A Chain A, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
Length = 234
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ +GD + T+ E V V+ H+ F DIA+L+L P+ + P CLP
Sbjct: 52 VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
++ ES + K G V G+G T G S L+ LEV + C I M
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
CA D Q
Sbjct: 170 CAGYDTKQ 177
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G E GE PWQ + I + FCGG +L+E ++LTAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 364 TGGP-LTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP +T +D Y V GIVS+G GCA Y +YT+V+ +++WI
Sbjct: 185 SGGPHVTRFKDTYFV-TGIVSWG-EGCARKGKY-GIYTKVTAFLKWI 228
>pdb|1MQ5|A Chain A, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|A Chain A, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1V3X|A Chain A, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|1WU1|A Chain A, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
pdb|2D1J|A Chain A, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2H9E|H Chain H, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
pdb|2P3U|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|2EI6|A Chain A, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|A Chain A, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|A Chain A, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|A Chain A, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|A Chain A, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|A Chain A, Factor Xa In Complex With D102-4380
pdb|3TK6|A Chain A, Factor Xa In Complex With D46-5241
Length = 233
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ +GD + T+ E V V+ H+ F DIA+L+L P+ + P CLP
Sbjct: 52 VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
++ ES + K G V G+G T G S L+ LEV + C I M
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
CA D Q
Sbjct: 170 CAGYDTKQ 177
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G E GE PWQ + I + FCGG +L+E ++LTAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 364 TGGP-LTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP +T +D Y V GIVS+G GCA Y +YT+V+ +++WI
Sbjct: 185 SGGPHVTRFKDTYFV-TGIVSWG-EGCARKGKY-GIYTKVTAFLKWI 228
>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
pdb|3KL6|A Chain A, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
pdb|2XBW|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ +GD + T+ E V V+ H+ F DIA+L+L P+ + P CLP
Sbjct: 52 VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
++ ES + K G V G+G T G S L+ LEV + C I M
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
CA D Q
Sbjct: 170 CAGYDTKQ 177
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G E GE PWQ + I + FCGG +L+E ++LTAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 364 TGGP-LTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP +T +D Y V GIVS+G GCA Y +YT+V+ +++WI
Sbjct: 185 SGGPHVTRFKDTYFV-TGIVSWG-EGCARKGKY-GIYTKVTAFLKWI 228
>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|B Chain B, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 241
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ +GD + T+ E V V+ H+ F DIA+L+L P+ + P CLP
Sbjct: 52 VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GES--FIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
++ ES K G V G+G T G S L+ LEV + C I M
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
CA D Q
Sbjct: 170 CAGYDTKQ 177
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G E GE PWQ + I + FCGG +L+E ++LTAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 365 GGP-LTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
GGP +T +D Y V GIVS+G GCA Y +YT+V+ +++WI
Sbjct: 186 GGPHVTRFKDTYFV-TGIVSWG-EGCARKGKY-GIYTKVTAFLKWI 228
>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|B Chain B, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 249
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ +GD + T+ E V V+ H+ F DIA+L+L P+ + P CLP
Sbjct: 67 VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 125
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
++ ES + K G V G+G T G S L+ LEV + C I M
Sbjct: 126 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 184
Query: 280 CAAPDETQ 287
CA D Q
Sbjct: 185 CAGYDTKQ 192
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 7/55 (12%)
Query: 315 QPRR------RIILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
QP R RI+ G E GE PWQ + I + FCGG +L+E ++LTAAHC+
Sbjct: 5 QPERGDNNLTRIVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 59
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 364 TGGP-LTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP +T +D Y V GIVS+G GCA Y +YT+V+ +++WI
Sbjct: 200 SGGPHVTRFKDTYFV-TGIVSWG-EGCARKGKY-GIYTKVTAFLKWI 243
>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|D Chain D, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|B Chain B, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|D Chain D, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|D Chain D, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 238
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ +GD + T+ E V V+ H+ F DIA+L+L P+ + P CLP
Sbjct: 52 VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
++ ES + K G V G+G T G S L+ LEV + C I M
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
CA D Q
Sbjct: 170 CAGYDTKQ 177
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G E GE PWQ + I + FCGG +L+E ++LTAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 364 TGGP-LTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP +T +D Y V GIVS+G GCA Y +YT+V+ +++WI
Sbjct: 185 SGGPHVTRFKDTYFV-TGIVSWG-EGCARKGKY-GIYTKVTAFLKWI 228
>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component B: A Novel, Glycosylated Two-chained Trypsin
Length = 238
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
L +G+HD + T V + + ++ P L ND+++++ + + P+C P
Sbjct: 55 LVVGEHD-SSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAP 113
Query: 224 QKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV-IEESIGIGMLCA 281
++ ++ GWG + L+ + + + +NA C V ++I M+CA
Sbjct: 114 DPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDTIYDDMICA 172
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 320 IILGGEADIGEFPWQVAI--ALDGMFFCGGALLNEHFVLTAAHCIMTGGP 367
I+ G EA EFPWQV++ FCGG+++N+ +V+ AAHC+ P
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAP 50
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 364 TGGPLTFEQ-DGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL+ + G L GIVS+G+ GCA YP +Y+RV + WI
Sbjct: 188 SGGPLSVKDGSGIFSLVGIVSWGI-GCA--SGYPGVYSRVGFHAGWI 231
>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFU|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
pdb|1NFW|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|B Chain B, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|B Chain B, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|B Chain B, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|B Chain B, Crystal Structure Of Fxa In Complex With 45.
pdb|1P0S|H Chain H, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
pdb|2BOH|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|A Chain A, Factor Xa Inhibitor Complex
pdb|2VH0|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|A Chain A, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|4A7I|B Chain B, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 254
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ +GD + T+ E V V+ H+ F DIA+L+L P+ + P CLP
Sbjct: 52 VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GES--FIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
++ ES K G V G+G T G S L+ LEV + C I M
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
CA D Q
Sbjct: 170 CAGYDTKQ 177
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G E GE PWQ + I + FCGG +L+E ++LTAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 364 TGGP-LTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP +T +D Y V GIVS+G GCA Y +YT+V+ +++WI
Sbjct: 185 SGGPHVTRFKDTYFV-TGIVSWG-EGCARKGKY-GIYTKVTAFLKWI 228
>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
Length = 255
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ +GD + T+ E V V+ H+ F DIA+L+L P+ + P CLP
Sbjct: 52 VRVGDRN-TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
++ ES + K G V G+G T G S L+ LEV + C I M
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
CA D Q
Sbjct: 170 CAGYDTKQ 177
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G E GE PWQ + I + FCGG +L+E ++LTAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 364 TGGP-LTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP +T +D Y V GIVS+G GCA Y +YT+V+ +++WI
Sbjct: 185 SGGPHVTRFKDTYFV-TGIVSWG-EGCARKGKY-GIYTKVTAFLKWI 228
>pdb|2KAI|A Chain A, Refined 2.5 Angstroms X-Ray Crystal Structure Of The
Complex Formed By Porcine Kallikrein A And The Bovine
Pancreatic Trypsin Inhibitor. Crystallization, Patterson
Search, Structure Determination, Refinement, Structure
And Comparison With Its Components And With The Bovine
Trypsin- Pancreatic Trypsin Inhibitor Complex
pdb|2PKA|A Chain A, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|2PKA|X Chain X, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|1HIA|A Chain A, Kallikrein Complexed With Hirustasin
pdb|1HIA|X Chain X, Kallikrein Complexed With Hirustasin
Length = 80
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
II G E + PWQVAI F CGG L+N +VLTAAHC + D Y V
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHC---------KNDNYEVWL 51
Query: 380 G 380
G
Sbjct: 52 G 52
>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole
Inhibitor
pdb|3SOS|A Chain A, Benzothiazinone Inhibitor In Complex With Fxia
Length = 238
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
GV+ ++ H + DIALL+L+ V T + +P+ LP KG+ + I V GWG
Sbjct: 75 GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
+ TLQK ++ +++N C I M+CA E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
I+GG A + GE+PWQV + CGG+++ ++LTAAHC
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL+ + + L GI S+G GCA P +YT V EY+ WI
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWG-EGCA-QRERPGVYTNVVEYVDWI 231
>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4-
Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole
pdb|1ZRK|A Chain A, Factor Xi Complexed With 3-Hydroxypropyl 3-(7-
Amidinonaphthalene-1-Carboxamido)benzenesulfonate
pdb|1ZSL|A Chain A, Factor Xi Complexed With A Pyrimidinone Inhibitor
Length = 238
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
GV+ ++ H + DIALL+L+ V T + +P+ LP KG+ + I V GWG
Sbjct: 75 GVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
+ TLQK ++ +++N C I M+CA E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
I+GG A + GE+PWQV + CGG+++ ++LTAAHC
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL+ + + L GI S+G GCA P +YT V EY+ WI
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWG-EGCA-QRERPGVYTNVVEYVDWI 231
>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUR|B Chain B, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUU|A Chain A, The X-Ray Crystal Structure Of Full-Length Type I Human
Plasminogen
pdb|4A5T|S Chain S, Structural Basis For The Conformational Modulation
Length = 791
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
F G +P++ R++ G A +PWQV++ GM FCGG L++ +VLTAAHC+
Sbjct: 546 FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 605
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 4/47 (8%)
Query: 364 TGGPL-TFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL FE+D Y +L G+ S+G+ GCA P+ P +Y RVS ++ WI
Sbjct: 741 SGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWI 784
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 201 DIALLQLDRPVPLTGTIQPVCLPQKGESFIGK-RGHVVGWGVTSFPMGEPSPTLQKLEVK 259
DIALL+L P +T + P CLP + + GWG T G + L++ ++
Sbjct: 646 DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFG--AGLLKEAQLP 703
Query: 260 VLSNARCS-------TVIEESIGIGMLCAAPDETQG 288
V+ N C+ V + G L D QG
Sbjct: 704 VIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 739
>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex
Length = 254
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 164 LHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
+ +GD + T E V V+ H+ F DIA+L+L P+ + P CLP
Sbjct: 52 VRVGDRN-TAAEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLP 110
Query: 224 QK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
++ ES + K G V G+G T G S L+ LEV + C I M
Sbjct: 111 ERDWAESTLMTQKTGIVSGFGRTH-EKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMF 169
Query: 280 CAAPDETQ 287
CA D Q
Sbjct: 170 CAGYDTKQ 177
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 320 IILGGEADIGEFPWQ-VAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G E GE PWQ + I + FCGG +L+E ++LTAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL 44
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 364 TGGP-LTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP +T +D Y V GIVS+G GCA Y +YT+V+ +++WI
Sbjct: 185 SGGPHVTRFKDTYFV-TGIVSWG-EGCARKGKY-GIYTKVTAFLKWI 228
>pdb|3H7O|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
pdb|3H7O|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
Length = 228
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 323 GGEADIGEFPWQVAIAL---DGMFFCGGALLNEHFVLTAAHCIMTGGPLTF 370
G + DI + PW VA+ + CGGA+L++ FVLTAAHC+ P T
Sbjct: 3 GEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETI 53
>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M
Proneurosin
Length = 223
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
L + LG H+L Q + VR V+ H + DI LL+L RP L+ IQP+
Sbjct: 47 NLQVFLGKHNLRQQESSQEQSSVVRAVI-HPDYDAASHDQDIMLLRLARPAKLSELIQPL 105
Query: 221 CLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLC 280
L ++ S H++GWG T+ G+ T+Q + ++S C I MLC
Sbjct: 106 PL-ERDCSAQTTSCHILGWGKTAD--GDFPDTIQCAYIHLVSREECEHAYPGQITQNMLC 162
Query: 281 AAPDETQG 288
A DE G
Sbjct: 163 AG-DEKYG 169
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
+++ GG D P+Q A+ G CGG L++ +VLTAAHC
Sbjct: 1 KLVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC 43
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G H L G+VS+G C P +YT V Y WI
Sbjct: 177 SGGPLVC---GDH-LRGLVSWGNIPCG-SKEKPGVYTNVCRYTNWI 217
>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9P|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
Length = 245
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 320 IILGGEADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHCI 362
I+ G EA ++PWQV++ + M FCGG+L++ +VLTAAHC+
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCV 46
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVT 242
V R++ H F+ DIALL+L+ PV ++ + V LP E+F G V GWG
Sbjct: 74 VSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDV 133
Query: 243 SF--PMGEPSPTLQKLEVKVLSNARCST 268
P+ P P L++++V ++ N C
Sbjct: 134 DNDEPLPPPFP-LKQVKVPIMENHICDA 160
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL + +G + AG+VS+G GCA P+ P +YTRV+ Y+ WIH
Sbjct: 194 SGGPLVCKVNGTWLQAGVVSWG-EGCA-QPNRPGIYTRVTYYLDWIH 238
>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
Length = 245
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 320 IILGGEADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHCI 362
I+ G EA ++PWQV++ + M FCGG+L++ +VLTAAHC+
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCV 46
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVT 242
V R++ H F+ DIALL+L+ PV ++ + V LP E+F G V GWG
Sbjct: 74 VSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDV 133
Query: 243 SF--PMGEPSPTLQKLEVKVLSNARCST 268
P+ P P L++++V ++ N C
Sbjct: 134 DNDEPLPPPFP-LKQVKVPIMENHICDA 160
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL + +G + AG+VS+G GCA P+ P +YTRV+ Y+ WIH
Sbjct: 194 SGGPLVCKVNGTWLQAGVVSWG-EGCA-QPNRPGIYTRVTYYLDWIH 238
>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|B Chain B, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
pdb|2PKS|B Chain B, Thrombin In Complex With Inhibitor
pdb|3PO1|B Chain B, Thrombin In Complex With Benzothiazole Guanidine
Length = 147
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV-LSNDIALLQLDRPVPLTGTIQ 218
++L++ +G H T+ + ++ H ++ L DIAL++L +PV + I
Sbjct: 57 NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 116
Query: 219 PVCLPQK--GESFI--GKRGHVVGWG 240
PVCLP + S + G +G V GWG
Sbjct: 117 PVCLPDRETAASLLQAGYKGRVTGWG 142
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 131
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 320 IILGGEADIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHC 361
I+ G +A G +PWQV++ G FCGG+L++E +V+TAAHC
Sbjct: 1 IVNGEDAIPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC 43
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVT 242
+ +V + F+ F + NDI LL+L P + T+ V LP + F G GWG T
Sbjct: 70 IAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVSLPNVDDDFPPGTVCATTGWGKT 129
Query: 243 SF 244
+
Sbjct: 130 KY 131
>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A
Para-Amidobenzylanmine P1 Group Carry A High Binding
Efficiency
pdb|3VFE|A Chain A, Virtual Screening And X-Ray Crystallography For Human
Kallikrein 6 Inhibitors With An Amidinothiophene P1
Group
Length = 223
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
L + LG H+L Q + VR V+ H + DI LL+L RP L+ IQP+
Sbjct: 46 NLQVFLGKHNLGQQESSQEQSSVVRAVI-HPDYDAASHDQDIMLLRLARPAKLSELIQPL 104
Query: 221 CLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLC 280
L ++ S H++GWG T+ G+ T+Q + ++S C I MLC
Sbjct: 105 PL-ERDCSAQTTSCHILGWGKTAD--GDFPDTIQCAYIHLVSREECEHAYPGQITQNMLC 161
Query: 281 AAPDETQG 288
A DE G
Sbjct: 162 AG-DEKYG 168
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
++ GG D P+Q A+ G CGG L++ +VLTAAHC
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC 42
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G H L G+VS+G C P +YT V Y WI
Sbjct: 176 SGGPLVC---GDH-LRGLVSWGNIPCG-SKEKPGVYTNVCRYTNWI 216
>pdb|1LTO|A Chain A, Human Alpha1-Tryptase
pdb|1LTO|B Chain B, Human Alpha1-Tryptase
pdb|1LTO|C Chain C, Human Alpha1-Tryptase
pdb|1LTO|D Chain D, Human Alpha1-Tryptase
Length = 245
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVT 242
V R++ H F+ DIALL+L+ PV ++ + V LP E+F G V GWG
Sbjct: 74 VSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDV 133
Query: 243 SF--PMGEPSPTLQKLEVKVLSNARCST 268
P+ P P L++++V ++ N C
Sbjct: 134 DNDEPLPPPFP-LKQVKVPIMENHICDA 160
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCI 362
I+ G EA ++PWQV++ + M FCGG+L++ +VLTAAHC+
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCL 46
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL + +G + AG+VS+ GCA P+ P +YTRV+ Y+ WIH
Sbjct: 194 SGGPLVCKVNGTWLQAGVVSWD-EGCA-QPNRPGIYTRVTYYLDWIH 238
>pdb|1BUI|A Chain A, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
pdb|1BUI|B Chain B, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
Length = 250
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
F G +P++ R++ G A +PWQV++ GM FCGG L++ +VLTAAHC+
Sbjct: 5 FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 64
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Query: 364 TGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL FE+D Y +L G+ S+G+ GCA P+ P +Y RVS ++ WI
Sbjct: 200 SGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 244
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 200 NDIALLQLDRPVPLTGTIQPVCLPQKGESFIGK-RGHVVGWGVTSFPMGEPSPTLQKLEV 258
DIALL+L P +T + P CLP + + GWG T G + L++ ++
Sbjct: 104 KDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFG--AGLLKEAQL 161
Query: 259 KVLSNARCS-------TVIEESIGIGMLCAAPDETQG 288
V+ N C+ V + G L D QG
Sbjct: 162 PVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 198
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 193 FHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWG 240
FHP + DI L++L + VP+ + P+CLP K +G G+V GWG
Sbjct: 179 FHPDNSTVDIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGWG 226
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 321 ILGGEADI-GEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTG 365
I+GG D G FPWQ + G L+NE ++LT A + G
Sbjct: 103 IMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAKNLRLG 148
>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha
Domain Complex
Length = 249
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
F G +P++ R++ G A +PWQV++ GM FCGG L++ +VLTAAHC+
Sbjct: 4 FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 63
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Query: 364 TGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
GGPL FE+D Y +L G+ S+G+ GCA P+ P +Y RVS ++ WI
Sbjct: 199 AGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 243
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 200 NDIALLQLDRPVPLTGTIQPVCLPQKGESFIGK-RGHVVGWGVTSFPMGEPSPTLQKLEV 258
DIALL+L P +T + P CLP + + GWG T G + L++ ++
Sbjct: 103 KDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFG--AGLLKEAQL 160
Query: 259 KVLSNARCS-------TVIEESIGIGMLCAAPDETQG 288
V+ N C+ V + G L D QG
Sbjct: 161 PVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 197
>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
pdb|1BML|B Chain B, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
Length = 250
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
F G +P++ R++ G A +PWQV++ GM FCGG L++ +VLTAAHC+
Sbjct: 5 FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 64
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Query: 364 TGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
GGPL FE+D Y +L G+ S+G+ GCA P+ P +Y RVS ++ WI
Sbjct: 200 AGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 244
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 200 NDIALLQLDRPVPLTGTIQPVCLPQKGESFIGK-RGHVVGWGVTSFPMGEPSPTLQKLEV 258
DIALL+L P +T + P CLP + + GWG T G + L++ ++
Sbjct: 104 KDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFG--AGLLKEAQL 161
Query: 259 KVLSNARCS-------TVIEESIGIGMLCAAPDETQG 288
V+ N C+ V + G L D QG
Sbjct: 162 PVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 198
>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex
pdb|3UIR|B Chain B, Crystal Structure Of The Plasmin-Textilinin-1 Complex
Length = 247
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
F G +P++ R++ G A +PWQV++ GM FCGG L++ +VLTAAHC+
Sbjct: 2 FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 61
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Query: 364 TGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL FE+D Y +L G+ S+G+ GCA P+ P +Y RVS ++ WI
Sbjct: 197 SGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 241
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 200 NDIALLQLDRPVPLTGTIQPVCLPQKGESFIGK-RGHVVGWGVTSFPMGEPSPTLQKLEV 258
DIALL+L P +T + P CLP + + GWG T G + L++ ++
Sbjct: 101 KDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFG--AGLLKEAQL 158
Query: 259 KVLSNARCS-------TVIEESIGIGMLCAAPDETQG 288
V+ N C+ V + G L D QG
Sbjct: 159 PVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 195
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 315 QPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
+ R+RII G +A +G FPWQV + G GGALL + ++LTAAH +
Sbjct: 85 EQRQRIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILTAAHTL 130
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 184 VRRVLFHSHF---HPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGW 239
+RRV H + + DIALL+L+ V L + P+CLP + +G G+V G+
Sbjct: 163 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGF 222
Query: 240 GV 241
GV
Sbjct: 223 GV 224
>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen
With Alpha Domain Of Streptokinase In The Presence
Cadmium Ions
Length = 248
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
F G +P++ R++ G A +PWQV++ GM FCGG L++ +VLTAAHC+
Sbjct: 3 FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 62
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Query: 364 TGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
GGPL FE+D Y +L G+ S+G+ GCA P+ P +Y RVS ++ WI
Sbjct: 198 AGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 242
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 200 NDIALLQLDRPVPLTGTIQPVCLPQKGESFIGK-RGHVVGWGVTSFPMGEPSPTLQKLEV 258
DIALL+L P +T + P CLP + + GWG T G + L++ ++
Sbjct: 102 KDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFG--AGLLKEAQL 159
Query: 259 KVLSNARCS-------TVIEESIGIGMLCAAPDETQG 288
V+ N C+ V + G L D QG
Sbjct: 160 PVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 196
>pdb|4GSO|A Chain A, Structure Of Jararacussin-I
Length = 232
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
+ + LG H LNE R + + + VL DI L++LD+P+ + I P
Sbjct: 44 TNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNMSEVLDKDIMLIKLDKPISNSKHIAP 103
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFP 245
+ LP S +G ++GWG + P
Sbjct: 104 LSLPSNPPS-VGSVCRIMGWGSITIP 128
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT 364
+LGG E DI E P+ +A +FCG L+N+ +V+TAAHC T
Sbjct: 1 VLGGDECDINEHPF-LAFLYSHGYFCGLTLINQEWVVTAAHCDST 44
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN 412
+GGPL GIVSYG C P P +YT V +Y WI N
Sbjct: 178 SGGPLICNGQ----FQGIVSYGAHSCGQGPK-PGIYTNVFDYTDWIQRN 221
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 315 QPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
+ R+RII G +A +G FPWQV + G GGALL + ++LTAAH +
Sbjct: 85 EQRQRIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILTAAHTL 130
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 184 VRRVLFHSHF---HPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGW 239
+RRV H + + DIALL+L+ V L + P+CLP + +G G+V G+
Sbjct: 163 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGF 222
Query: 240 GV 241
GV
Sbjct: 223 GV 224
>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|B Chain B, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|C Chain C, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|D Chain D, Crystal Structure Of Human Plasminogen Catalytic Domain
Length = 247
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
F G +P++ R++ G A +PWQV++ GM FCGG L++ +VLTAAHC+
Sbjct: 2 FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 61
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Query: 364 TGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
GGPL FE+D Y +L G+ S+G+ GCA P+ P +Y RVS ++ WI
Sbjct: 197 AGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 241
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 200 NDIALLQLDRPVPLTGTIQPVCLPQKGESFIGK-RGHVVGWGVTSFPMGEPSPTLQKLEV 258
DIALL+L P +T + P CLP + + GWG T G + L++ ++
Sbjct: 101 KDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFG--AGLLKEAQL 158
Query: 259 KVLSNARCS-------TVIEESIGIGMLCAAPDETQG 288
V+ N C+ V + G L D QG
Sbjct: 159 PVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 195
>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUB|C Chain C, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUC|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non- Inhibitory Antibody Fab40.Deltatrp And
Ac-Kqlr-Chloromethylketone
pdb|3K2U|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Inhibitory Antibody Fab40
Length = 257
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 158 PVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSN-DIALLQL----DRPVP 212
P + + LG H + + + G+ + + ++ + F S+ D+ L++L DR
Sbjct: 47 PRDSVSVVLGQHFFNRTTDVTQTF-GIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCAT 105
Query: 213 LTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST--V 269
+ +QP+CLP+ G +F G + + GWG + S +L++ V ++++ +CS+ V
Sbjct: 106 RSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEV 165
Query: 270 IEESIGIGMLCA 281
I MLCA
Sbjct: 166 YGADISPNMLCA 177
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL E++G L GI+S+G GC + P +YTRV+ Y+ WI+
Sbjct: 191 SGGPLACEKNGVAYLYGIISWG-DGCGRL-HKPGVYTRVANYVDWIN 235
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 321 ILGGEADI-GEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGP 367
I+GG + + G PW AI + G FC G+L++ +V++AAHC P
Sbjct: 1 IIGGSSSLPGSHPWLAAIYI-GDSFCAGSLVHTCWVVSAAHCFSHSPP 47
>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75
Length = 248
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 158 PVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSN-DIALLQL----DRPVP 212
P + + LG H + + + G+ + + ++ + F S+ D+ L++L DR
Sbjct: 47 PRDSVSVVLGQHFFNRTTDVTQTF-GIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCAT 105
Query: 213 LTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST--V 269
+ +QP+CLP+ G +F G + + GWG + S +L++ V ++++ +CS+ V
Sbjct: 106 RSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEV 165
Query: 270 IEESIGIGMLCA 281
I MLCA
Sbjct: 166 YGADISPNMLCA 177
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL E++G L GI+S+G GC + P +YTRV+ Y+ WI+
Sbjct: 191 SGGPLACEKNGVAYLYGIISWG-DGCGRL-HKPGVYTRVANYVDWIN 235
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 321 ILGGEADI-GEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGP 367
I+GG + + G PW AI + G FC G+L++ +V++AAHC P
Sbjct: 1 IIGGSSSLPGSHPWLAAIYI-GDSFCAGSLVHTCWVVSAAHCFSHSPP 47
>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine
(S434a-T475a-C482s-K437a Mutant)
pdb|1ZPB|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 4-Methyl-Pentanoic Acid {1-[4-
Guanidino-1-(Thiazole-2-Carbonyl)-Butylcarbamoyl]-2-
Methyl- Propyl}-Amide
pdb|1ZPC|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
2-[2-(3-Chloro-Phenyl)-2-Hydroxy-
Acetylamino]-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]- 3-Methyl-Butyramide
pdb|2FDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Coagulation Factor Xia In Complex With
Alpha-Ketothiazole Arginine Derived Ligand
pdb|1ZMJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With 4-(Guanidinomethyl)-Phenylboronic Acid
pdb|1ZML|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With (R)-1-(4-(4-(Hydroxymethyl)-1,3,2-
Dioxaborolan-2-Yl)phenethyl)guanidine
pdb|1ZMN|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
(R)-1-(4-(4-(Hydroxymethyl)-1,3,
2-Dioxaborolan-2-Yl)phenyl)guanidine
pdb|1ZOM|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With A Peptidomimetic Inhibitor
pdb|1ZSJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
N-(7-Carbamimidoyl-Naphthalen-1-
Yl)-3-Hydroxy-2-Methyl-Benzamide
pdb|1ZSK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
6-Carbamimidoyl-4-(3-Hydroxy-2-
Methyl-Benzoylamino)-Naphthalene-2-Carboxylic Acid
Methyl Ester
pdb|1ZTJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Benzylamino-2-
Methylsulfanyl-6-Oxo-6h-Pyrimidin-1-Yl)-N-[4-Guanidino-
1- (Thiazole-2-Carbonyl)-Butyl]-Acetamide
pdb|1ZTK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Amino-6-Oxo-2-M-Tolyl-6h-
Pyrimidin-1-Yl)-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]-Acetamide
pdb|1ZTL|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With N-[4-Guanidino-1-(Thiazole-2-
Carbonyl)-Butyl]-2-{6-Oxo-5-[(Quinolin-8-Ylmethyl)-
Amino]- 2-M-Tolyl-6h-Pyrimidin-1-Yl}-Acetamide
Length = 238
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
GV+ ++ H + DIALL+L+ V + +P+ LP KG+ + I V GWG
Sbjct: 75 GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
+ TLQK ++ +++N C I M+CA E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
I+GG A + GE+PWQV + CGG+++ ++LTAAHC
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL+ + + L GI S+G GCA P +YT V EY+ WI
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWG-EGCA-QRERPGVYTNVVEYVDWI 231
>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Kunitz Protease Inhibitor
Domain Of Protease Nexin Ii
Length = 237
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
GV+ ++ H + DIALL+L+ V + +P+ LP KG+ + I V GWG
Sbjct: 75 GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
+ TLQK ++ +++N C I M+CA E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
I+GG A + GE+PWQV + CGG+++ ++LTAAHC
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL+ + + L GI S+G GCA P +YT V EY+ WI
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWG-EGCA-QRERPGVYTNVVEYVDWI 231
>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With
2-Guanidino-1-(4-(4,4,5,5-
Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl
Nicotinate
Length = 237
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 183 GVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE-SFIGKRGHVVGWGV 241
GV+ ++ H + DIALL+L+ V + +P+ LP KG+ + I V GWG
Sbjct: 75 GVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGY 134
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCSTVIE-ESIGIGMLCAAPDE 285
+ TLQK ++ +++N C I M+CA E
Sbjct: 135 RKL-RDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYRE 178
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 321 ILGGEADI-GEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHC 361
I+GG A + GE+PWQV + CGG+++ ++LTAAHC
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHC 45
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL+ + + L GI S+G GCA P +YT V EY+ WI
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWG-EGCA-QRERPGVYTNVVEYVDWI 231
>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
pdb|1BDA|B Chain B, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 313 YRQPRRRIILGGEADIGEFPWQVAI------ALDGMFFCGGALLNEHFVLTAAHCIMTGG 366
Y QP+ RI G ADI PWQ AI + F CGG L++ ++L+AAHC
Sbjct: 7 YSQPQFRIKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERF 66
Query: 367 P 367
P
Sbjct: 67 P 67
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN 412
+GGPL DG L GI+S+G+ GC P +YT+V+ Y+ WI N
Sbjct: 216 SGGPLVCLNDGRMTLVGIISWGL-GCG-QKDVPGVYTKVTNYLDWIRDN 262
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQL----DRPVPLTGTIQPVCLPQKGESFIG-KRGHVVG 238
V + + H F NDIALLQL R + ++ VCLP + G
Sbjct: 92 VEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSG 151
Query: 239 WGVTSFPMGEPSPTLQKLEVKVLSNARCST--VIEESIGIGMLCAAPDETQG 288
+G S L++ V++ ++RC++ ++ ++ MLCA + G
Sbjct: 152 YGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGG 203
>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor
pdb|1YBW|B Chain B, Protease Domain Of Hgfa With No Inhibitor
pdb|1YC0|A Chain A, Short Form Hgfa With First Kunitz Domain From Hai-1
pdb|2R0K|A Chain A, Protease Domain Of Hgfa With Inhibitor Fab58
Length = 283
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 158 PVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSN-DIALLQL----DRPVP 212
P + + LG H + + + G+ + + ++ + F S+ D+ L++L DR
Sbjct: 82 PRDSVSVVLGQHFFNRTTDVTQTF-GIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCAT 140
Query: 213 LTGTIQPVCLPQKGESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST--V 269
+ +QP+CLP+ G +F G + + GWG + S +L++ V ++++ +CS+ V
Sbjct: 141 RSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEV 200
Query: 270 IEESIGIGMLCA 281
I MLCA
Sbjct: 201 YGADISPNMLCA 212
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL E++G L GI+S+G GC + P +YTRV+ Y+ WI+
Sbjct: 226 SGGPLACEKNGVAYLYGIISWG-DGCGRL-HKPGVYTRVANYVDWIN 270
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 296 PVGYTKKHLQQFHQGTTYRQPRRRIILGGEADI-GEFPWQVAIALDGMFFCGGALLNEHF 354
P ++ + H+ T+ +PR I+GG + + G PW AI + G FC G+L++ +
Sbjct: 14 PASPGRQACGRRHKKRTFLRPR---IIGGSSSLPGSHPWLAAIYI-GDSFCAGSLVHTCW 69
Query: 355 VLTAAHCIMTGGP 367
V++AAHC P
Sbjct: 70 VVSAAHCFSHSPP 82
>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|2ZCK|P Chain P, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|3QUM|P Chain P, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
pdb|3QUM|Q Chain Q, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
Length = 237
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G E + PWQV +A G CGG L++ +VLTAAHCI
Sbjct: 1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCI 43
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 21/134 (15%)
Query: 163 VLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFV---------------LSNDIALLQL 207
V+ LG H L +T V + + HS HP S+D+ LL+L
Sbjct: 48 VILLGRHSLFHPEDTGQVFQ-----VSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRL 102
Query: 208 DRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS 267
P LT ++ + LP + E +G + GWG LQ +++ V+SN C+
Sbjct: 103 SEPAELTDAVKVMDLPTQ-EPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCA 161
Query: 268 TVIEESIGIGMLCA 281
V + + MLCA
Sbjct: 162 QVHPQKVTKFMLCA 175
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL VL GI S+G CA +P P LYT+V Y +WI
Sbjct: 189 SGGPLVCNG----VLQGITSWGSEPCA-LPERPSLYTKVVHYRKWI 229
>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A
Engineered Mutant Trypsin Inhibitor
Length = 223
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 7/144 (4%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
V LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 VSLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPVSPVG 298
CA D QG PV G
Sbjct: 162 CAGYLEGGKDSCQGDSGGPVVCAG 185
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCAGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 216
>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 128
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 323 GGEADIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHC 361
G +A G +PWQV++ G FCGG+L++E +V+TAAHC
Sbjct: 1 GEDAIPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC 40
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGWGVT 242
+ +V + F+ F + NDI LL+L P + T+ VCLP + F G GWG T
Sbjct: 67 IAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVCLPNVDDDFPPGTVCATTGWGKT 126
Query: 243 SF 244
+
Sbjct: 127 KY 128
>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Magnesium(Ii) Chelate
pdb|1G3C|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff Base
Iron(Iii) Chelate
pdb|1G3D|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Copper (Ii) Chelate
pdb|1G3E|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff-Base
Copper (Ii) Chelate
Length = 228
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
+I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 5 KIVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVV 63
Query: 379 AG 380
G
Sbjct: 64 EG 65
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 49 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 107
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 108 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 166
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 167 CAGYLEGGKDSCQGDSGGPV 186
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 182 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 221
>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between
Pancreatic Secretory Inhibitor (Kazal Type) And
Trypsinogen At 1.8 Angstroms Resolution. Structure
Solution, Crystallographic Refinement And Preliminary
Structural Interpretation
pdb|2TGP|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2TPI|Z Chain Z, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3TPI|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|4TPI|Z Chain Z, The Refined 2.2-angstroms (0.22-nm) X-ray Crystal
Structure Of The Ternary Complex Formed By Bovine
Trypsinogen, Valine-valine And The Arg15 Analogue Of
Bovine Pancreatic Trypsin Inhibitor
pdb|1BTZ|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTX|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTW|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTP|A Chain A, Unique Binding Of A Novel Synthetic Inhibitor, N-[3-[4-[4-
(Amidinophenoxy)-Carbonyl]phenyl]-2-Methyl-2-Propenoyl]-
N- Allylglycine Methanesulfonate To Bovine Trypsin,
Revealed By The Crystal Structure Of The Complex
pdb|1BTY|A Chain A, Crystal Structure Of Beta-Trypsin In Complex With
Benzamidine
pdb|1TGB|A Chain A, Crystal Structure Of Bovine Trypsinogen At 1.8 Angstroms
Resolution. Ii. Crystallographic Refinement, Refined
Crystal Structure And Comparison With Bovine Trypsin
pdb|1TGC|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TGN|A Chain A, Structure Of Bovine Trypsinogen At 1.9 Angstroms
Resolution
pdb|1TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TNG|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNH|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNI|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNJ|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNK|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNL|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|2TGA|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|2TGD|A Chain A, Lack Of The Transition State Stabilization Site Is A
Factor In The Inactivity Of Trypsinogen, A Serine
Protease Zymogen. Structure Of Dfp Inhibited Bovine
Trypsinogen At 2.1 Angstroms Resolution
pdb|2TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
Length = 229
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
+I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 6 KIVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVV 64
Query: 379 AG 380
G
Sbjct: 65 EG 66
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 50 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 108
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 109 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 167
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 168 CAGYLEGGKDSCQGDSGGPV 187
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 183 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 222
>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram
Spermatozoa
Length = 290
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQ--KGESFIGKRGHVVGW 239
R V +++ H + +NDIAL+++ PV I P CLPQ G + + V GW
Sbjct: 82 RYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGW 141
Query: 240 GVTSFPMGEPSPTLQKLEVKVLSNARCSTV 269
G SP LQ+ V ++ C++
Sbjct: 142 GFLQENARRTSPMLQEARVDLIDLGLCNST 171
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 320 IILGGEADIGEFPWQVAIAL------DGMFFCGGALLNEHFVLTAAHCI 362
II G +A G +PW V++ + CGG+LLN ++LTAAHC
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCF 49
>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 243
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 64 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 122
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 123 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 181
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 182 CAGYLEGGKDSCQGDAGGPV 201
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
+I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 20 KIVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVV 78
Query: 379 AG 380
G
Sbjct: 79 EG 80
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 197 AGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 236
>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K
pdb|1MZD|A Chain A, Crystal Structure Of Human Pro-Granzyme K
Length = 240
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 153 QLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVP 212
Q R T + LG H L++ NE S +++ + S SNDI L++L
Sbjct: 45 QYRFTKGQSPTVVLGAHSLSK-NEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAK 103
Query: 213 LTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCST 268
L ++ + + K G + V GWG T PS TL+++ V VLS C++
Sbjct: 104 LNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNS 159
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
II G E P+ +I G CGG L++ +VLTAAHC
Sbjct: 3 IIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHC 44
>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
Length = 237
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 58 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 116
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 117 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 175
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 176 CAGYLEGGKDSCQGDSGGPV 195
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
+I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 14 KIVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVV 72
Query: 379 AG 380
G
Sbjct: 73 EG 74
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 191 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 230
>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin)
Length = 224
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
+ + + LG+H++ L V+ ++ H ++ L NDI L++L P + +
Sbjct: 44 TRIQVRLGEHNIKVLEGNEQFINAVK-IIRHPKYNRDTLDNDIMLIKLSSPAVINARVST 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
+ LP + G + GWG T SF P L+ L+ VL+ A C I M
Sbjct: 103 ISLPTAPPA-AGTECLISGWGNTLSFGADYPD-ELKCLDAPVLTQAECKASYPGKITNSM 160
Query: 279 LC 280
C
Sbjct: 161 FC 162
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G + P+QV++ G FCGG+L++E +V++AAHC T + + VL
Sbjct: 1 IVGGYTCEENSLPYQVSLN-SGSHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L G+VS+G GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCNGQ----LQGVVSWG-HGCA-WKNRPGVYTKVYNYVDWI 216
>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The
Venom Of Copperhead Snake Agkistrodon Contortrix
Contortrix
pdb|2AIQ|A Chain A, Crystal Structure Of Benzamidine-Inhibited Protein C
Activator From The Venom Of Copperhead Snake Agkistrodon
Contortrix Contortrix
Length = 231
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
+ ++LG H+L LN+ + R + + + + DI L++L+RPV + I P+
Sbjct: 45 NMRIYLGMHNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPL 104
Query: 221 CLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLC 280
LP S +G ++GWG + P + +L A C + + LC
Sbjct: 105 SLPSNPPS-VGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAY-KGLAATTLC 162
Query: 281 AA 282
A
Sbjct: 163 AG 164
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
+I G E +I E + + +G CGG L+N+ +VLTA HC
Sbjct: 1 VIGGDECNINEHRFLALVYANGSL-CGGTLINQEWVLTARHC 41
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL GI+S G CA P P +YT+V +Y WI
Sbjct: 177 SGGPLICNGQ----FQGILSVGGNPCA-QPRKPGIYTKVFDYTDWIQ 218
>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar
Spermatozoa
Length = 263
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 182 RGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQ--KGESFIGKRGHVVGW 239
R V ++ H + + NDIAL+++ PVP I P CLPQ G + V GW
Sbjct: 82 RFVEEIIIHEKYVSGLEINDIALIKITPPVPCGPFIGPGCLPQFKAGPPRAPQTCWVTGW 141
Query: 240 GVTSFPMGEPSPTLQKLEVKVLSNARCST 268
G SPTLQ+ V ++ C++
Sbjct: 142 GYLKEKGPRTSPTLQEARVALIDLELCNS 170
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 320 IILGGEADIGEFPWQVAIAL------DGMFFCGGALLNEHFVLTAAHCI 362
++ G A+ G +PW V++ + CGG LLN H+VLTAAHC
Sbjct: 1 VVGGMSAEPGAWPWMVSLQIFMYHNNRRYHTCGGILLNSHWVLTAAHCF 49
>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin
Length = 223
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSXPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGXLEGGKDSCQGDSGGPV 181
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCXKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 216
>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247
pdb|1F0U|A Chain A, Bovine Trypsin Complexed With Rpr128515
pdb|1EZX|C Chain C, Crystal Structure Of A Serpin:protease Complex
pdb|1LQE|A Chain A, Crystal Structure Of Trypsin In Complex With 79.
pdb|1UTN|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTO|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-ray Structures And Association Constant Measurements
pdb|1UTP|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTQ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|2BY5|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY6|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY7|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY8|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY9|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BYA|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 243
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 64 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 122
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 123 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 181
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 182 CAGYLEGGKDSCQGDSGGPV 201
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 319 RIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
+I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 20 KIVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVV 78
Query: 379 AG 380
G
Sbjct: 79 EG 80
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 197 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 236
>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight
Into Structural Radiation Damage
Length = 223
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CAAPDETQG 288
CA E +G
Sbjct: 162 CAYGLEGKG 170
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GC + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCQ-AKNKPGVYTKVCNYVSWI 216
>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk
Type Protease Inhibitor And Its Interaction With Trypsin
pdb|1TPA|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2PTC|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1PPC|E Chain E, Geometry Of Binding Of The Benzamidine-and Arginine-based
Inhibitors
N-alpha-(2-naphthyl-sulphonyl-glycyl)-dl-p-
amidinophenylalanyl- Piperidine (napap) And
(2r,4r)-4-methyl-1-[n-alpha-(3-methyl-1,2,3,4-
Tetrahydro-8-quinolinesulphonyl)-l-arginyl]-2-piperidine
Carboxylic Acid (mqpa) To Human Alpha-thrombin: X-ray
Crystallographic Determination Of The Napap-trypsin
Complex And Modeling Of Napap- Thrombin And
Mqpa-thrombin
pdb|1PPE|E Chain E, The Refined 2.0 Angstroms X-Ray Crystal Structure Of The
Complex Formed Between Bovine Beta-Trypsin And Cmti-I, A
Trypsin Inhibitor From Squash Seeds (Cucurbita Maxima):
Topological Similarity Of The Squash Seed Inhibitors
With The Carboxypeptidase A Inhibitor From Potatoes
pdb|1PPH|E Chain E, Geometry Of Binding Of The Nalpha-Tosylated Piperidides Of
M-Amidino-, P-Amidino-And P-Guanidino Phenylalanine To
Thrombin And Trypsin: X- Ray Crystal Structures Of Their
Trypsin Complexes And Modeling Of Their Thrombin
Complexes
pdb|1SMF|E Chain E, Studies On An Artificial Trypsin Inhibitor Peptide Derived
From The Mung Bean Inhibitor
pdb|1JRT|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1JRS|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1CE5|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzamidine
pdb|2BZA|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzylamine
pdb|1QCP|A Chain A, Crystal Structure Of The Rwj-51084 Bovine Pancreatic Beta-
Trypsin At 1.8 A
pdb|1SBW|A Chain A, Crystal Structure Of Mung Bean Inhibitor Lysine Active
Fragment Complex With Bovine Beta-Trypsin At 1.8a
Resolution
pdb|1YYY|1 Chain 1, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1SFI|A Chain A, High Resolution Structure Of A Potent, Cyclic Protease
Inhibitor From Sunflower Seeds
pdb|1TIO|A Chain A, High Packing Density Form Of Bovine Beta-trypsin In
Cyclohexane
pdb|2TIO|A Chain A, Low Packing Density Form Of Bovine Beta-Trypsin In
Cyclohexane
pdb|2BTC|E Chain E, Bovine Trypsin In Complex With Squash Seed Inhibitor
(Cucurbita Pepo Trypsin Inhibitor Ii)
pdb|3BTE|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta-Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTD|E Chain E, The Crystal Structures Of The Complexes Between The Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTF|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTG|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTH|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTK|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTM|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTQ|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTT|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTW|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|1QBN|A Chain A, Bovine Trypsin 2-[amino(Imino)methyl]-2-Hydroxyphenoxy]-6-
[3-(4,5-Dihydro-1h-Imidazol-2-Yl)phenoxy]pyridine-4-
Carboxylic Acid (Zk-806688) Complex
pdb|1QBO|A Chain A, Bovine Trypsin
7-[[6-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
2-Methyl-Benzimidazol-1-Yl]methyl]naphthalene-2-
Carboximidamid Zk-806711 Inhibitor Complex
pdb|1QB9|A Chain A, Bovine Trypsin
7-[[2-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
9h-Carbozol-9-Yl] Methyl]naphthalene-2-Carboximidamide
(Zk- 806450) Complex
pdb|1QB1|A Chain A, Bovine Trypsin With 1-[2-[5-[amino(imino)methyl]-2-
Hydroxyphenoxy]-6-[3-(4,
5-dihydro-1-methyl-1h-imidazol-2-
Yl)phenoxy]pyridin-4-yl]piperidine-3-carboxylic Acid
(zk- 806974)
pdb|1QB6|A Chain A, Bovine Trypsin 3,3'-[3,5-Difluoro-4-Methyl-2, 6-
Pyridinediylbis(Oxy)]bis(Benzenecarboximidamide) (Zk-
805623) Complex
pdb|1QA0|A Chain A, Bovine Trypsin 2-Aminobenzimidazole Complex
pdb|1F2S|E Chain E, Crystal Structure Of The Complex Formed Between Bovine
Beta- Trypsin And Mcti-A, A Trypsin Inhibitor Of Squash
Family At 1.8 A Resolution
pdb|1D6R|A Chain A, Crystal Structure Of Cancer Chemopreventive Bowman-Birk
Inhibitor In Ternary Complex With Bovine Trypsin At 2.3
A Resolution. Structural Basis Of Janus-Faced Serine
Protease Inhibitor Specificity
pdb|1C9T|A Chain A, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|B Chain B, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|C Chain C, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|D Chain D, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|E Chain E, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|F Chain F, Complex Of Bdellastasin With Bovine Trypsin
pdb|1QL7|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1QL8|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1G9I|E Chain E, Crystal Structure Of Beta-Trysin Complex In Cyclohexane
pdb|1EJM|A Chain A, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|C Chain C, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|E Chain E, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1JIR|A Chain A, Crystal Structure Of Trypsin Complex With Amylamine In
Cyclohexane
pdb|1J8A|A Chain A, Crystal Structure Of Benzamidine Inhibited Bovine
Pancreatic Trypsin At 105k To 1.21a Resolution From
Laboratory Source With High Number Of Waters Modelled
pdb|1G36|A Chain A, Trypsin Inhibitor Complex
pdb|1K1P|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1O|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1N|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1M|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1L|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1J|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1I|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1EB2|A Chain A, Trypsin Inhibitor Complex (Bpo)
pdb|1GJ6|A Chain A, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1N6X|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1N6Y|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1OYQ|A Chain A, Trypsin Inhibitor Complex
pdb|1O2H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O2O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2P|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Q|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2R|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2S|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2T|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2U|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2V|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2W|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2X|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Y|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Z|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O30|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O31|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O32|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O33|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O34|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O35|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O36|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O37|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O38|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O39|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3A|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3B|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3C|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3D|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3E|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3F|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3G|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O3N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1NC6|A Chain A, Potent, Small Molecule Inhibitors Of Human Mast Cell
Tryptase. Anti-Asthmatic Action Of A Dipeptide-Based
Transition State Analogue Containing Benzothiazole
Ketone
pdb|1P2I|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2J|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2K|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OX1|A Chain A, Crystal Structure Of The Bovine Trypsin Complex With A
Synthetic 11 Peptide Inhibitor
pdb|1RXP|A Chain A, Structure Of Trypsin (Orthorhombic) With 1-(4-Tert-
Butylcarbamoyl- Piperazine-1-Carbonyl)-3-(3-Guanidino-
Propyl)-4-Oxo-Azetidine-2-Carboxylic Acid
pdb|1S0Q|A Chain A, Native Bovine Pancreatic Trypsin
pdb|1S0R|A Chain A, Bovine Pancreatic Trypsin Inhibited With Benzamidine At
Atomic Resolution
pdb|2A7H|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|1TX7|A Chain A, Bovine Trypsin Complexed With P-
Amidinophenylmethylphosphinic Acid (Ampa)
pdb|2BLV|A Chain A, Trypsin Before A High Dose X-Ray "burn"
pdb|2BLW|A Chain A, Trypsin After A High Dose X-Ray "burn"
pdb|1TX8|A Chain A, Bovine Trypsin Complexed With Amso
pdb|1Y3U|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3V|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3W|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3X|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3Y|A Chain A, Trypsin Inhibitor Complex
pdb|1YP9|A Chain A, Trypsin Inhibitor Complex
pdb|2AYW|A Chain A, Crystal Structure Of The Complex Formed Between Trypsin
And A Designed Synthetic Highly Potent Inhibitor In The
Presence Of Benzamidine At 0.97 A Resolution
pdb|2FI3|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser,
Cys38->ser) In Complex With Trypsin
pdb|2FX4|A Chain A, Bovine Trypsin Bound By 4-piperidinebutyrate To Make
Acylenzyme Complex
pdb|2FX6|A Chain A, Bovine Trypsin Complexed With 2-Aminobenzamidazole
pdb|2AGE|X Chain X, Succinyl-Aapr-Trypsin Acyl-Enzyme At 1.15 A Resolution
pdb|2AGG|X Chain X, Succinyl-Aapk-Trypsin Acyl-Enzyme At 1.28 A Resolution
pdb|2AGI|X Chain X, The Leupeptin-Trypsin Covalent Complex At 1.14 A
Resolution
pdb|2AH4|X Chain X, Guanidinobenzoyl-Trypsin Acyl-Enzyme At 1.13 A Resolution
pdb|2G5N|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G5V|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G8T|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2F3C|E Chain E, Crystal Structure Of Infestin 1, A Kazal-Type
Serineprotease Inhibitor, In Complex With Trypsin
pdb|2G81|E Chain E, Crystal Structure Of The Bowman-Birk Inhibitor From Vigna
Unguiculata Seeds In Complex With Beta-Trypsin At 1.55
Angstrons Resolution
pdb|2G55|A Chain A, Anomalous Substructure Of Trypsin (P3121)
pdb|2OTV|A Chain A, Crystal Structure Of The Complex Formed Between Bovine
Trypsin And Nicotinamide At 1.56 A Resolution
pdb|2J9N|A Chain A, Robotically Harvested Trypsin Complexed With Benzamidine
Containing Polypeptide Mediated Crystal Contacts
pdb|2OXS|A Chain A, Crytal Structure Of The Trypsin Complex With Benzamidine
At High Temperature (35 C)
pdb|2UUY|A Chain A, Structure Of A Tick Tryptase Inhibitor In Complex With
Bovine Trypsin
pdb|2ILN|A Chain A, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2ILN|B Chain B, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2CMY|A Chain A, Crystal Complex Between Bovine Trypsin And Veronica
Hederifolia Trypsin Inhibitor
pdb|1AQ7|A Chain A, Trypsin With Inhibitor Aeruginosin 98-b
pdb|1AUJ|A Chain A, Bovine Trypsin Complexed To Meta-Cyano-Benzylic Inhibitor
pdb|1AZ8|A Chain A, Bovine Trypsin Complexed To Bis-Phenylamidine Inhibitor
pdb|1BJU|A Chain A, Beta-Trypsin Complexed With Acpu
pdb|1BJV|A Chain A, Beta-Trypsin Complexed With Appu
pdb|1GBT|A Chain A, Structure Of An Acyl-Enzyme Intermediate During Catalysis:
(Guanidinobenzoyl) Trypsin
pdb|1MAX|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MAY|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MTS|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTU|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTV|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTW|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1TLD|A Chain A, Crystal Structure Of Bovine Beta-Trypsin At 1.5 Angstroms
Resolution In A Crystal Form With Low Molecular Packing
Density. Active Site Geometry, Ion Pairs And Solvent
Structure
pdb|1TPO|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPP|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPS|A Chain A, Atomic Structure Of The Trypsin-A90720a Complex: A Unified
Approach To Structure And Function
pdb|1TYN|A Chain A, Atomic Structure Of The Trypsin-cyclotheonamide A Complex:
Lessons For The Design Of Serine Protease Inhibitors
pdb|1XUF|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUG|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUH|A Chain A, Trypsin-Keto-Babim-Co+2, Ph 8.2
pdb|1XUI|A Chain A, Trypsin-Keto-Babim, Zn+2-Free, Ph 8.2
pdb|1XUJ|A Chain A, Trypsin-Keto-Babim-Zn+2, Ph 8.2
pdb|1XUK|A Chain A, Trypsin-Babim-Sulfate, Ph 5.9
pdb|2PLX|A Chain A, Trypsin Complexed To A Synthetic Peptide From Veronica
Hederifolia
pdb|2PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3PTB|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|3PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1C1N|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1O|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1P|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1Q|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1R|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1T|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2D|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2E|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2F|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2G|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2H|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2I|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2J|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2K|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2L|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2M|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5P|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Q|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5R|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5S|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5T|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5U|A Chain A, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5V|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GHZ|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI0|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI1|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI2|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI3|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI4|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI5|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI6|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2O9Q|A Chain A, The Crystal Structure Of Bovine Trypsin Complexed With A
Small Inhibition Peptide Orb2k
pdb|2QN5|T Chain T, Crystal Structure And Functional Study Of The Bowman-Birk
Inhibitor From Rice Bran In Complex With Bovine Trypsin
pdb|2QYI|A Chain A, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2QYI|C Chain C, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2ZDK|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDL|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDM|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDN|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFS|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFT|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZHD|A Chain A, Exploring Trypsin S3 Pocket
pdb|3D65|E Chain E, Crystal Structure Of Textilinin-1, A Kunitz-Type Serine
Protease Inhibitor From The Australian Common Brown
Snake Venom, In Complex With Trypsin
pdb|3E8L|A Chain A, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|3E8L|B Chain B, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|2ZQ1|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZQ2|A Chain A, Exploring Trypsin S3 Pocket
pdb|3ITI|A Chain A, Structure Of Bovine Trypsin With The Mad Triangle B3c
pdb|3GY2|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY3|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY4|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY5|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY6|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Bis-Benzamidines Diminazene And Pentamidine
pdb|3GY7|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY8|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3AAS|A Chain A, Bovine Beta-Trypsin Bound To Meta-Guanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAU|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diguanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|B Chain B, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3M35|A Chain A, Trypsin In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3MFJ|A Chain A, Bovine Trypsin At 0.8 A Resolution, Restrained Refinement
pdb|3MI4|A Chain A, Bovine Trypsin At 0.8 A Resolution, Non-Restrained
Refinemen
pdb|3I29|A Chain A, Crystal Structure Of A Binary Complex Between An Mutant
Tryp Inhibitor With Bovine Trypsin
pdb|3A7T|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide
pdb|3A7V|A Chain A, Crystal Structure Of Trypsin Complexed With
3-Formylbenzimidamide
pdb|3A7W|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((Tetrahydro-2h-
Pyran-2-Yloxyimino)methyl)benzimidamide (Soaking 4hours)
pdb|3A7X|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
45seconds)
pdb|3A7Y|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
3-Yloxyimino)methyl)benzimidamide (Soaking 2hours)
pdb|3A7Z|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
4-Yloxyimino)methyl)benzimidamide (Soaking 3hours)
pdb|3A80|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic Acid
(Soaking 40seconds)
pdb|3A81|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 8
Hours)
pdb|3A82|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid
pdb|3A83|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide
pdb|3A84|A Chain A, Crystal Structure Of Trypsin Complexed With(E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 5
Seconds)
pdb|3A85|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 15
Seconds)
pdb|3A86|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 30
Seconds)
pdb|3A87|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 5
Minutes)
pdb|3A88|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 30
Minutes)
pdb|3A89|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 4
Hours)
pdb|3A8A|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide And Aniline
pdb|3A8B|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((4-
Bromophenylimino)methyl)benzimidamide
pdb|3A8C|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
With Mixture Of
[(E)-2-(4-Carbamimidoylbenzylideneaminooxy)acetic Acid]
And [(E)-2-
(4-Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic
Acid])
pdb|3A8D|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Under
Aniline-Free Condition)
pdb|3LJJ|A Chain A, Bovine Trypsin In Complex With Ub-Thr 10
pdb|3LJO|A Chain A, Bovine Trypsin In Complex With Ub-Thr 11
pdb|2XTT|B Chain B, Bovine Trypsin In Complex With Evolutionary Enhanced
Schistocerca Gregaria Protease Inhibitor 1 (Sgpi-1-P02)
pdb|3NK8|A Chain A, Trypsin In Complex With Fluorine-Containing Fragment
pdb|3NKK|A Chain A, Trypsin In Complex With Fluorine Containing Fragment
pdb|3M7Q|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Pancreatic Trypsin
pdb|3RDZ|A Chain A, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3RDZ|B Chain B, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3ATI|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3ATK|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3ATL|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamidine
pdb|3ATM|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXA|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3RXB|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobutanoic Acid
pdb|3RXC|A Chain A, Crystal Structure Of Trypsin Complexed With
2-Aminopyridine
pdb|3RXD|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3RXE|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide
pdb|3RXF|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminopyridine
pdb|3RXG|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminocyclohexanol
pdb|3RXH|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Imidazol-4-Yl) Ethanamine
pdb|3RXI|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXJ|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobenzoic Acid
pdb|3RXK|A Chain A, Crystal Structure Of Trypsin Complexed With Methyl
4-Amino-1-Methyl- Pyrrolidine-2-Carboxylate
pdb|3RXL|A Chain A, Crystal Structure Of Trypsin Complexed With
(2,5-Dimethyl-3-Furyl) Methanamine
pdb|3RXM|A Chain A, Crystal Structure Of Trypsin Complexed With
[2-(2-Thienyl)thiazol-4- Yl]methanamine
pdb|3RXO|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Pyrrol-1-Ylphenyl) Methanamine
pdb|3RXP|A Chain A, Crystal Structure Of Trypsin Complexed With
(1,5-Dimethylpyrazol-3- Yl)methanamine
pdb|3RXQ|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F01
And F05, Cocktail Experiment)
pdb|3RXR|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine (F01 And F03, Cocktail Experiment)
pdb|3RXS|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine (F04 And A06, Cocktail
Experiment)
pdb|3RXT|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamin (F04 And F03, Cocktail
Experiment)
pdb|3RXU|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And A06, Cocktail Experiment)
pdb|3RXV|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And F03, Cocktail Experiment)
pdb|3T25|A Chain A, Tmao-Grown Orthorhombic Trypsin (Bovine)
pdb|3T26|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Sarcosine
pdb|3T27|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Betaine
pdb|3T28|A Chain A, Tmao-Grown Trypsin (Bovine)-Previously Unreported
Tetragonal Crystal Form
pdb|3T29|A Chain A, Tmao-Grown Trigonal Trypsin (Bovine)
pdb|4AB8|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4AB9|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABA|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABB|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABD|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABE|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABF|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABG|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABH|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABI|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Pta)sfti-1(1,14), That Was 1,4-
Disubstituted With A 1,2,3-Trizol To Mimic A Trans Amide
Bond
pdb|4ABJ|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Ica)sfti-1(1,14), That Was 1,5-
Disubstituted With 1,2,3-Trizol To Mimic A Cis Amide
Bond
pdb|3VPK|A Chain A, Crystal Structure Of 6-guanidinohexanoyl Trypsin
pdb|3UNR|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Trypsin At 1.2a Resolution
pdb|3RU4|T Chain T, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
pdb|1C1S|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|4I8G|A Chain A, Bovine Trypsin At 0.8 Resolution
pdb|4I8H|A Chain A, Bovine Trypsin At 0.75 Resolution
pdb|4I8J|A Chain A, Bovine Trypsin At 0.87 A Resolution
pdb|4I8K|A Chain A, Bovine Trypsin At 0.85 Resolution
pdb|4I8L|A Chain A, Bovine Trypsin At 0.87 Resolution
pdb|4AOQ|A Chain A, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|B Chain B, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|C Chain C, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOR|A Chain A, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|B Chain B, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|C Chain C, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
Length = 223
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 216
>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor
Complexed With Bovine Trypsin
Length = 220
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 5/138 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA---APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGLEGGDSCQGDSGGPV 179
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 175 SGGPVVCSGK----LQGIVSWG-SGCA--KNKPGVYTKVCNYVSWI 213
>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine
Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT
REFINEMENT
Length = 223
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 332 PWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAG 380
P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+ G
Sbjct: 13 PYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEG 60
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 216
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 315 QPRRRIILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
+ R++II G +A +G FPWQV + G GGALL + ++LTAAH +
Sbjct: 153 EQRQQIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILTAAHTL 198
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 184 VRRVLFHSHF---HPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGW 239
+RRV H + + DIALL+L+ V L + P+CLP + +G G+V G+
Sbjct: 231 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGF 290
Query: 240 GV 241
GV
Sbjct: 291 GV 292
>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase)
Length = 223
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDSCQGDXGGPV 181
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 178 GGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 216
>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+LLN +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLLNSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGIYTKVCNYVSWI 216
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ +NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDACQGDSGGPV 181
>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In
Complex With Trypsin
pdb|2FTL|E Chain E, Crystal Structure Of Trypsin Complexed With Bpti At 100k
Length = 223
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLXSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 216
>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|B Chain B, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|D Chain D, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|G Chain G, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
Length = 224
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
+ + + LG+H++ L E + +++ H ++ L NDI L++L P + +
Sbjct: 44 TRIQVRLGEHNIKVL-EGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVST 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
+ LP + G + GWG T SF P L+ L+ VL+ A C I M
Sbjct: 103 ISLPTAPPA-AGTECLISGWGNTLSFGADYPD-ELKCLDAPVLTQAECKASYPGKITNSM 160
Query: 279 LC 280
C
Sbjct: 161 FC 162
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G + P+QV++ G FCGG+L++E +V++AAHC T + + VL
Sbjct: 1 IVGGYTCEENSLPYQVSLN-SGYHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
GGP+ L G+VS+G GCA + P +YT+V Y+ WI
Sbjct: 177 AGGPVVCNGQ----LQGVVSWG-HGCA-WKNRPGVYTKVYNYVDWI 216
>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant
Length = 229
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ +NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNKRRKNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 216
>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme
pdb|1DSU|B Chain B, Human Factor D, Complement Activating Enzyme
pdb|1DFP|A Chain A, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DFP|B Chain B, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DIC|A Chain A, Structure Of 3,4-Dichloroisocoumarin-Inhibited Factor D
pdb|1BIO|A Chain A, Human Complement Factor D In Complex With Isatoic
Anhydride Inhibitor
pdb|1HFD|A Chain A, Human Complement Factor D In A P21 Crystal Form
pdb|4D9R|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9R|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
ILGG EA+ P+ ++ L+G CGG L+ E +VL+AAHC+
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCL 43
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Query: 138 KVNLARKVGGVCDIDQ--------LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLF 189
++N A GGV +Q L D ++ + LG H L+Q E S V R +
Sbjct: 19 QLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQ-PEPSKRLYDVLRAVP 77
Query: 190 HSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI-GKRGHVVGWGVTSFPMGE 248
H P + +D+ LLQL L ++P+ + G V GWG+ +
Sbjct: 78 HPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRR 137
Query: 249 PSPTLQKLEVKVLSNARCS--TVIEESIGIGMLCA 281
P +LQ + + VL A C+ T + +I ++CA
Sbjct: 138 PD-SLQHVLLPVLDRATCNRRTHHDGAITERLMCA 171
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL VL G+V+ G C P +YTRV+ Y WI
Sbjct: 183 SGGPLVCGG----VLEGVVTSGSRVCGNR-KKPGIYTRVASYAAWI 223
>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a
pdb|2XWB|I Chain I, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|J Chain J, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 228
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
ILGG EA+ P+ ++ L+G CGG L+ E +VL+AAHC+
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCL 43
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Query: 138 KVNLARKVGGVCDIDQ--------LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLF 189
++N A GGV +Q L D ++ + LG H L+Q E S V R +
Sbjct: 19 QLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQ-PEPSKRLYDVLRAVP 77
Query: 190 HSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI-GKRGHVVGWGVTSFPMGE 248
H P + +D+ LLQL L ++P+ + G V GWG+ +
Sbjct: 78 HPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRR 137
Query: 249 PSPTLQKLEVKVLSNARCS--TVIEESIGIGMLCA 281
P +LQ + + VL A C+ T + +I ++CA
Sbjct: 138 PD-SLQHVLLPVLDRATCNRRTHHDGAITERLMCA 171
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
GGPL VL G+V+ G C P +YTRV+ Y WI
Sbjct: 183 AGGPLVCGG----VLEGVVTSGSRVCGNR-KKPGIYTRVASYAAWI 223
>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a
pdb|2XWA|B Chain B, Crystal Structure Of Complement Factor D Mutant R202a
Length = 228
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
ILGG EA+ P+ ++ L+G CGG L+ E +VL+AAHC+
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCL 43
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 13/155 (8%)
Query: 138 KVNLARKVGGVCDIDQ--------LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLF 189
++N A GGV +Q L D ++ + LG H L+Q E S V R +
Sbjct: 19 QLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQ-PEPSKRLYDVLRAVP 77
Query: 190 HSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI-GKRGHVVGWGVTSFPMGE 248
H P + +D+ LLQL L ++P+ + G V GWG+ +
Sbjct: 78 HPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRR 137
Query: 249 PSPTLQKLEVKVLSNARCS--TVIEESIGIGMLCA 281
P +LQ + + VL A C+ T + +I ++CA
Sbjct: 138 PD-SLQHVLLPVLDRATCNRRTHHDGAITERLMCA 171
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL VL G+V+ G C P +YTRV+ Y WI
Sbjct: 183 SGGPLVCGG----VLEGVVTSGSAVCGNR-KKPGIYTRVASYAAWI 223
>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|B Chain B, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|C Chain C, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|D Chain D, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|3L33|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L3T|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3P92|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17G)
pdb|3P95|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17D)
Length = 224
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
+ + + LG+H++ L E + +++ H ++ L NDI L++L P + +
Sbjct: 44 TRIQVRLGEHNIKVL-EGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVST 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT-SFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
+ LP + G + GWG T SF P L+ L+ VL+ A C I M
Sbjct: 103 ISLPTAPPA-AGTECLISGWGNTLSFGADYPD-ELKCLDAPVLTQAECKASYPGKITNSM 160
Query: 279 LC 280
C
Sbjct: 161 FC 162
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G + P+QV++ G FCGG+L++E +V++AAHC T + + VL
Sbjct: 1 IVGGYTCEENSLPYQVSLN-SGSHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
GGP+ L G+VS+G GCA + P +YT+V Y+ WI
Sbjct: 177 AGGPVVCNGQ----LQGVVSWG-HGCA-WKNRPGVYTKVYNYVDWI 216
>pdb|2HNT|C Chain C, Crystallographic Structure Of Human Gamma-Thrombin
Length = 70
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDG--MFFCGGALLNEHFVLTAAHCIM 363
I+ G +A+IG PWQV + CG +L+++ +VLTAAHC++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLL 46
>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity
Length = 228
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
ILGG EA+ P+ ++ L+G CGG L+ E +VL+AAHC+
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCL 43
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 13/155 (8%)
Query: 138 KVNLARKVGGVCDIDQ--------LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLF 189
++N A GGV +Q L D ++ + LG H L+Q E S V R +
Sbjct: 19 QLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQ-PEPSKRLYDVLRAVP 77
Query: 190 HSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFI-GKRGHVVGWGVTSFPMGE 248
H + P + +D+ LLQL L ++P+ + G V GWG+ +
Sbjct: 78 HPDYQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRR 137
Query: 249 PSPTLQKLEVKVLSNARCS--TVIEESIGIGMLCA 281
P +LQ + + VL A C+ T + +I ++CA
Sbjct: 138 PD-SLQHVLLPVLDRATCNRRTHHDGAITERLMCA 171
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL VL G+VS+G C P +YTRV+ Y WI
Sbjct: 183 SGGPLVCGG----VLEGVVSWGSRVCGNR-KKPGIYTRVASYAAWI 223
>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen
pdb|1QRZ|B Chain B, Catalytic Domain Of Plasminogen
pdb|1QRZ|C Chain C, Catalytic Domain Of Plasminogen
pdb|1QRZ|D Chain D, Catalytic Domain Of Plasminogen
Length = 246
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
F G +P++ R++ G A +PWQV++ G FCGG L++ +VLTAAHC+
Sbjct: 1 FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGQHFCGGTLISPEWVLTAAHCL 60
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Query: 364 TGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL FE+D Y +L G+ S+G+ GCA P+ P +Y RVS ++ WI
Sbjct: 196 SGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 240
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 200 NDIALLQLDRPVPLTGTIQPVCLPQKGESFIGK-RGHVVGWGVTSFPMGEPSPTLQKLEV 258
DIALL+L P +T + P CLP + + GWG T G + L++ ++
Sbjct: 100 KDIALLKLSSPAVITDKVIPACLPSPNYMVADRTECFITGWGETQGTFG--AGLLKEAQL 157
Query: 259 KVLSNARCS-------TVIEESIGIGMLCAAPDETQG 288
V+ N C+ V + G L D QG
Sbjct: 158 PVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 194
>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi
pdb|1ZR0|A Chain A, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
pdb|1ZR0|C Chain C, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
Length = 223
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS + C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSTSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 216
>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5A|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5B|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5U|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
Length = 223
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ +NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 216
>pdb|2FI5|E Chain E, Crystal Structure Of A Bpti Variant (Cys38->ser) In
Complex With Trypsin
pdb|2FTM|A Chain A, Crystal Structure Of Trypsin Complexed With The Bpti
Variant (Tyr35- >gly)
Length = 224
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 8/141 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGT-IQ 218
S + + LG+ ++ + E + + + H ++ L+NDI L++L L + +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLXDSRVA 102
Query: 219 PVCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGM 278
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 SISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNM 161
Query: 279 LCA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 FCAGYLEGGKDSCQGDSGGPV 182
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 178 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 217
>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin
Length = 81
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 198 LSNDIALLQLDRPVPLTGTIQPVCLPQK--GESFI--GKRGHVVGWG 240
L DIAL++L +PV + I PVCLP + S + G +G V GWG
Sbjct: 23 LDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 69
>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri)
Bt.C1
pdb|1V2R|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssri)bt.B4
Length = 223
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSRIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 216
>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.B4
pdb|1V2P|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.A4
Length = 223
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSYIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 216
>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai)
Bt.D1
pdb|1V2V|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssai)
Bt.C1
pdb|1V2W|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssai)bt.B4
Length = 223
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSAIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 216
>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte
Elastase (Pmn Elastase) And The Third Domain Of The
Turkey Ovomucoid Inhibitor
Length = 218
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
LG H+L++ T V V+R+ F + + P L NDI +LQL+ + +Q LP +
Sbjct: 55 LGAHNLSRREPTRQVF-AVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 226 GESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSN 263
G G + +GWG+ G S LQ+L V V+++
Sbjct: 113 GRRLGNGVQCLAMGWGLLGRNRGIAS-VLQELNVTVVTS 150
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G A +P+ V++ L G FCG L+ +FV++AAHC
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHC 42
>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human
Leukocyte Elastase In A Complex With A Valine
Chloromethyl Ketone Inhibitor
pdb|1H1B|A Chain A, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|1H1B|B Chain B, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|2Z7F|E Chain E, Crystal Structure Of The Complex Of Human Neutrophil
Elastase With 12SLPI
pdb|3Q76|A Chain A, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q76|B Chain B, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q77|A Chain A, Structure Of Human Neutrophil Elastase In Complex With A
Dihydropyrimidone Inhibitor
Length = 218
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
LG H+L++ T V V+R+ F + + P L NDI +LQL+ + +Q LP +
Sbjct: 55 LGAHNLSRREPTRQVF-AVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 226 GESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSN 263
G G + +GWG+ G S LQ+L V V+++
Sbjct: 113 GRRLGNGVQCLAMGWGLLGRNRGIAS-VLQELNVTVVTS 150
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G A +P+ V++ L G FCG L+ +FV++AAHC
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHC 42
>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase
Length = 218
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
LG H+L++ T V V+R+ F + + P L NDI +LQL+ + +Q LP +
Sbjct: 55 LGAHNLSRREPTRQVF-AVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 226 GESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSN 263
G G + +GWG+ G S LQ+L V V+++
Sbjct: 113 GRRLGNGVQCLAMGWGLLGRNRGIAS-VLQELNVTVVTS 150
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G A +P+ V++ L G FCG L+ +FV++AAHC
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHC 42
>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein
(cap37)
Length = 225
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGP 367
I+ G +A +FP+ +I G FCGGAL++ FV+TAA C + P
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNP 48
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 142 ARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSND 201
AR V Q ++ VS +VL G +DL + S + + + + P ND
Sbjct: 33 ARFVMTAASCFQSQNPGVSTVVL--GAYDLRRRERQSRQTFSISS-MSENGYDPQQNLND 89
Query: 202 IALLQLDRPVPLTGTIQPVCLP-QKGESFIGKRGHVVGWG 240
+ LLQLDR LT ++ + LP Q G R V GWG
Sbjct: 90 LMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWG 129
>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT 364
+I G E DI E + VA FFCGG L+N +V+TAAHC T
Sbjct: 1 VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDST 45
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
+ + LG H LNE R + + + + VL DI L++LD+P+ + I P
Sbjct: 45 TNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAP 104
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKL-EVKVLSNARC 266
+ +G ++GWG + P+ E P + + +L +A C
Sbjct: 105 L-SLPSSPPSVGSVCRIMGWGSIT-PVKETFPDVPYCANINLLDHAVC 150
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN 412
+GGPL GIVSYG C P P +YT V +Y WI N
Sbjct: 180 SGGPLICNGQ----FQGIVSYGAHPCGQGPK-PGIYTNVFDYTDWIQRN 223
>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT 364
+I G E DI E + VA FFCGG L+N +V+TAAHC T
Sbjct: 1 VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDST 45
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
++ + LG H LNE R + + + + VL DI L++LD+P+ + I P
Sbjct: 45 TDFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAP 104
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKL-EVKVLSNARC 266
+ +G ++GWG + P+ E P + + +L +A C
Sbjct: 105 L-SLPSSPPSVGSVCRIMGWGSIT-PVKETFPDVPYCANINLLDHAVC 150
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN 412
+GGPL GIVSYG C P P +YT V +Y WI N
Sbjct: 180 SGGPLICNGQ----FQGIVSYGAHPCGQGPK-PGIYTNVFDYTDWIQRN 223
>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Ssfi.Glu)bt.D1
pdb|1V2T|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(ssfi.glu)bt.b4
Length = 223
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-EGCA-QKNKPGVYTKVCNYVSWI 216
>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Sswi)bt.B4
Length = 223
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ L+NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSWIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 216
>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp
pdb|1AE5|A Chain A, Human Heparin Binding Protein
Length = 225
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGP 367
I+ G +A +FP+ +I G FCGGAL++ FV+TAA C + P
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNP 48
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 142 ARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSND 201
AR V Q ++ VS +VL G +DL + S + + + + P ND
Sbjct: 33 ARFVMTAASCFQSQNPGVSTVVL--GAYDLRRRERQSRQTFSISS-MSENGYDPQQNLND 89
Query: 202 IALLQLDRPVPLTGTIQPVCLP-QKGESFIGKRGHVVGWG 240
+ LLQLDR LT ++ + LP Q G R V GWG
Sbjct: 90 LMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWG 129
>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin
Variant X(99175190)BT
Length = 223
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 216
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ +NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDACQGDSGGPV 181
>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin Variant X(Triple.Glu)bt.D2
pdb|1V2L|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.D1
pdb|1V2M|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.A1
Length = 223
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-EGCA-QKNKPGVYTKVCNYVSWI 216
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ +NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDACQGDSGGPV 181
>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLB|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLP|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PM3|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGIYTKVCNYVSWI 216
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ +NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDACQGDSGGPV 181
>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGFYTKVCNYVSWI 216
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ +NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181
>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
pdb|4B1T|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
Length = 223
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 AGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 216
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ +NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDACQGDAGGPV 181
>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PWC|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PYH|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3Q00|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Comlex
With Small Molecule Inhibitor
Length = 223
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-EGCA-QKNKPGIYTKVCNYVSWI 216
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ +NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDACQGDSGGPV 181
>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G GCA + P YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-EGCA-QKNKPGFYTKVCNYVSWI 216
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ +NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLXSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVL 261
+ LP S G + + GWG T L+ L+ +L
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPIL 143
>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO
Determine The Conformational Dynamics Of Trypsin
Length = 223
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H + L+NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYDSNTLNNDIMLIKLKSAASLDSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDSCQGDSGGPV 181
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 332 PWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAG 380
P+QV++ G FCGG+L++ +V++AAHC +G + +D +V+ G
Sbjct: 13 PYQVSLN-SGYHFCGGSLIDSQWVVSAAHCYKSGIQVRLGEDNINVVEG 60
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P +YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGVYTKVCNYVSWI 216
>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|B Chain B, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|C Chain C, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|D Chain D, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|E Chain E, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|F Chain F, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|G Chain G, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|H Chain H, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|I Chain I, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|J Chain J, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|K Chain K, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|L Chain L, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|M Chain M, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|N Chain N, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|O Chain O, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|P Chain P, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V12|A Chain A, Bovine Trypsin Variant X(tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V13|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G GCA + P YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-EGCA-QKNKPGFYTKVCNYVSWI 216
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ +NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVL 261
+ LP S G + + GWG T L+ L+ +L
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPIL 143
>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
pdb|4B2A|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
Length = 223
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ +NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDACQGDAGGPV 181
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
GGP+ L GIVS+G GCA + P +YT+V Y+ WI
Sbjct: 177 AGGPVVCSGK----LQGIVSWG-EGCA-QKNKPGVYTKVCNYVSWI 216
>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UOP|A Chain A, Bovine Trypsin Variant X(triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UQO|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P YT+V Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGFYTKVCNYVSWI 216
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ +NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDACQGDSGGPV 181
>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UPE|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|B Chain B, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ +NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDACQGDSGGPV 181
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGP+ L GIVS+G +GCA + P YT++ Y+ WI
Sbjct: 177 SGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGFYTKLCNYVSWI 216
>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 99
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL ++DG LAGIVS+G C+ S P +Y+RV+ + W+
Sbjct: 49 SGGPLVCQKDGVWTLAGIVSWGSGVCST--STPGVYSRVTALMPWVQ 93
>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
pdb|4B2C|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
Length = 223
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
GGP+ L GIVS+G +GCA + P YT+V Y+ WI
Sbjct: 177 AGGPVVCSGK----LQGIVSWG-SGCA-QKNKPGFYTKVCNYVSWI 216
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ +NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDACQGDAGGPV 181
>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl
101, 146
Length = 218
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
LG H+L++ T V V+R+ F + P L NDI +LQL+ + +Q LP +
Sbjct: 55 LGAHNLSRREPTRQVF-AVQRI-FEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 226 GESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSN 263
G G + +GWG+ G S LQ+L V V+++
Sbjct: 113 GRRLGNGVQCLAMGWGLLGRNRGIAS-VLQELNVTVVTS 150
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G A +P+ V++ L G FCG L+ +FV++AAHC
Sbjct: 1 IVGGRRARPHAWPFMVSLQLAGGHFCGATLIAPNFVMSAAHC 42
>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 99
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL ++DG LAGIVS+G C+ S P +Y+RV+ + W+
Sbjct: 49 SGGPLVCQKDGVWTLAGIVSWGSGVCST--STPAVYSRVTALMPWVQ 93
>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A
Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms
Resolution
Length = 218
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
LG H+L++ T V V+R+ F + P L NDI +LQL+ + +Q LP +
Sbjct: 55 LGAHNLSRREPTRQVF-AVQRI-FEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQ 112
Query: 226 GESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSN 263
G G + +GWG+ G S LQ+L V V+++
Sbjct: 113 GRRLGNGVQCLAMGWGLLGRNRGIAS-VLQELNVTVVTS 150
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G A +P+ V++ L G FCG L+ +FV++AAHC
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHC 42
>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
pdb|4B2B|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
Length = 223
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLA 379
I+ G P+QV++ G FCGG+L+N +V++AAHC +G + +D +V+
Sbjct: 1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVE 59
Query: 380 G 380
G
Sbjct: 60 G 60
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+ ++ + E + + + H ++ +NDI L++L L +
Sbjct: 44 SGIQVRLGEDNINVV-EGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVAS 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGML 279
+ LP S G + + GWG T L+ L+ +LS++ C + I M
Sbjct: 103 ISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMF 161
Query: 280 CA-----APDETQGTCFVPV 294
CA D QG PV
Sbjct: 162 CAGYLEGGKDACQGDAGGPV 181
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
GGP+ L GIVS+G GCA + P YT+V Y+ WI
Sbjct: 177 AGGPVVCSGK----LQGIVSWG-EGCA-QKNKPGFYTKVCNYVSWI 216
>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant
Length = 247
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 307 FHQGTTYRQPRR---RIILGGEADIGEFPWQVAIALD-GMFFCGGALLNEHFVLTAAHCI 362
F G +P++ ++ G A +PWQV++ GM FCGG L++ +VLTAAHC+
Sbjct: 2 FDCGKPQVEPKKCPGAVVGGCVAYPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL 61
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Query: 364 TGGPLT-FEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL FE+D Y +L G+ S+G+ GCA P+ P +Y RVS ++ WI
Sbjct: 197 SGGPLVCFEKDKY-ILQGVTSWGL-GCA-RPNKPGVYVRVSRFVTWIE 241
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 200 NDIALLQLDRPVPLTGTIQPVCLPQKGESFIGK-RGHVVGWGVTSFPMGEPSPTLQKLEV 258
DIALL+L P +T + P CLP + + GWG T G + L + ++
Sbjct: 101 KDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFG--AGLLMEAQL 158
Query: 259 KVLSNARCS-------TVIEESIGIGMLCAAPDETQG 288
V+ N C+ V + G L D QG
Sbjct: 159 PVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 195
>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Closed-Form)
pdb|3S9B|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Open-Form)
pdb|3S9C|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V In Complex
With The Fragment (Residues 1533-1546) Of Human Factor V
pdb|3SBK|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Ppack-Bound Form)
Length = 234
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
+ + LG H NE +R + + P L DI L++L RPV + I PV
Sbjct: 48 NIRIKLGMHSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPV 107
Query: 221 CLPQKGESFIGKRGHVVGWG---VTSFP 245
LP + +G R ++GWG T++P
Sbjct: 108 SLPSRSRG-VGSRCRIMGWGKISTTTYP 134
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 320 IILGGEADIGEFPWQVAI--ALDGMFFCGGALLNEHFVLTAAHC 361
++ G E +I E P+ VA+ + C GAL+N +VLTAAHC
Sbjct: 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHC 44
>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
pdb|3RP2|B Chain B, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
Length = 224
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 161 ELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPV 220
E+ + LG HD+ + E++ + V + + H ++ +DI LL+L++ V LT + V
Sbjct: 50 EITVILGAHDVRK-RESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVV 108
Query: 221 CLPQKGESFI--GKRGHVVGWGVTSFPMGEP-SPTLQKLEVKVLSNARC 266
LP + FI G GWG T + +P S TL+++E++++ C
Sbjct: 109 PLPSPSD-FIHPGAMCWAAGWGKTG--VRDPTSYTLREVELRIMDEKAC 154
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 344 FCGGALLNEHFVLTAAHC 361
CGG L++ FVLTAAHC
Sbjct: 29 ICGGFLISRQFVLTAAHC 46
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 356 LTAAHCIMTGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNAIV 415
L AA +GGPL V GIVSYG P ++TRVS Y+ WI NA++
Sbjct: 174 LRAAFMGDSGGPLLCAG----VAHGIVSYGHPDA----KPPAIFTRVSTYVPWI--NAVI 223
Query: 416 T 416
Sbjct: 224 N 224
>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9Q|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 321 ILGG-EADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
ILGG EA+ P+ ++ ++G CGG L+ E +VL+AAHC+
Sbjct: 1 ILGGREAEAHARPYMASVQVNGEHLCGGVLVAEQWVLSAAHCL 43
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 154 LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
L D ++ + LG H L+Q E S V R + H P + +D+ LLQL L
Sbjct: 43 LEDAADGKVQVLLGAHSLSQ-PEPSKRLYDVLRAVPHPDSRPDTIDHDLLLLQLSEKATL 101
Query: 214 TGTIQPVCLP-QKGESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCS--T 268
++P LP Q+ + + G V GWG+ S P LQ + + VL A C+ T
Sbjct: 102 GPAVRP--LPWQRVDRDVEPGTLCDVAGWGIVSHAGRRPD-RLQHVLLPVLDRATCNRRT 158
Query: 269 VIEESIGIGMLCA 281
+ +I M+CA
Sbjct: 159 HHDGAITQRMMCA 171
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL VL G+V+ G C P +YTRV+ Y WI
Sbjct: 183 SGGPLVCGG----VLEGVVTSGSRVCGNR-KKPGIYTRVASYAAWI 223
>pdb|1AU8|A Chain A, Human Cathepsin G
pdb|1T32|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|1CGH|A Chain A, Human Cathepsin G
Length = 224
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG H++ Q E + RR + H ++ + NDI LLQL R V + P
Sbjct: 48 SNINVTLGAHNI-QRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNP 106
Query: 220 VCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC 266
V LP+ E G V GWG S G + TL++++++V + +C
Sbjct: 107 VALPRAQEGLRPGTLCTVAGWGRVSMRRG--TDTLREVQLRVQRDRQC 152
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 320 IILGGEADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHC 361
II G E+ P+ + + G CGG L+ E FVLTAAHC
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHC 45
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 8/48 (16%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHV 411
+GGPL +V GIVSYG + + +P P+++TRVS ++ WI
Sbjct: 181 SGGPLLCN----NVAHGIVSYGKS--SGVP--PEVFTRVSSFLPWIRT 220
>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|G Chain G, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|C Chain C, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|H Chain H, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|C Chain C, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|H Chain H, Bovine Chymotrypsin Complexed To Bpti
pdb|1VGC|C Chain C, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|C Chain C, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|C Chain C, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|C Chain C, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|C Chain C, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|C Chain C, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|E Chain E, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|F Chain F, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|C Chain C, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|G Chain G, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|C Chain C, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|G Chain G, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|G Chain G, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|G Chain G, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|G Chain G, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|G Chain G, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|G Chain G, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|G Chain G, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|G Chain G, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|C Chain C, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|G Chain G, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|C Chain C, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|G Chain G, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|C Chain C, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|G Chain G, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|G Chain G, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|C Chain C, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|C Chain C, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|C Chain C, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|C Chain C, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|C Chain C, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
Length = 97
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL +++G L GIVS+G + C+ S P +Y RV+ + W+
Sbjct: 47 SGGPLVCKKNGAWTLVGIVSWGSSTCST--STPGVYARVTALVNWVQ 91
>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|3RU4|E Chain E, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 96
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL +++G L GIVS+G + C+ S P +Y RV+ + W+
Sbjct: 46 SGGPLVCKKNGAWTLVGIVSWGSSTCST--STPGVYARVTALVNWVQ 90
>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human
Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With
Vacant Active Site
Length = 238
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
I+ G E + PWQ A+ F CGG L++ +VLTAAHCI
Sbjct: 1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCI 43
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL DG VL G+ S+G C P+ P + RV Y++WI
Sbjct: 190 SGGPLMC--DG--VLQGVTSWGYVPCGT-PNKPSVAVRVLSYVKWI 230
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 199 SNDIALLQLDRPVP-LTGTIQPVCLPQKGESFIGKRGHVVGWGVT-----SFPMGEPSPT 252
S+D+ LL+L P +T ++ V LP + E +G GWG SFP
Sbjct: 94 SHDLMLLRLTEPADTITDAVKVVELPTE-EPEVGSTCLASGWGSIEPENFSFP-----DD 147
Query: 253 LQKLEVKVLSNARCSTVIEESIGIGMLC 280
LQ +++K+L N C + + MLC
Sbjct: 148 LQCVDLKILPNDECKKAHVQKVTDFMLC 175
>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva
Plasminogen Activator In Complex With Egr-Cmk
(Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 313 YRQPRRRIILGGEADIGEFPWQVAIALDGM------FFCGGALLNEHFVLTAAHCI 362
Y++P+ G DI PWQ AI F CGG L++ +VLTAAHC
Sbjct: 7 YKEPQLHSTGGLFTDITSHPWQAAIFAQNRRSSGERFLCGGILISSCWVLTAAHCF 62
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN 412
+GGPL D + L GI+S+GV GC P +YT+V+ Y+ WI N
Sbjct: 216 SGGPLVCMNDNHMTLLGIISWGV-GCG-EKDVPGVYTKVTNYLGWIRDN 262
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQLDRPVPL----TGTIQPVCLPQKGESFIG-KRGHVVG 238
V++ + H F +NDIALLQL P + +++ +CLP+ + G
Sbjct: 92 VKKYIVHKEFDDDTYNNDIALLQLKSDSPQCAQESDSVRAICLPEANLQLPDWTECELSG 151
Query: 239 WGVTSFPMGEPSPTLQKLEVKVLSNARCST--VIEESIGIGMLCAA 282
+G S L++ V++ ++RC+ + +++ MLCA
Sbjct: 152 YGKHKSSSPFYSEQLKEGHVRLYPSSRCAPKFLFNKTVTNNMLCAG 197
>pdb|1KYN|B Chain B, Cathepsin-G
pdb|1KYN|A Chain A, Cathepsin-G
Length = 235
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG H++ Q E + RR + H ++ + NDI LLQL R V + P
Sbjct: 48 SNINVTLGAHNI-QRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNP 106
Query: 220 VCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARC 266
V LP+ E G V GWG S G + TL++++++V + +C
Sbjct: 107 VALPRAQEGLRPGTLCTVAGWGRVSMRRG--TDTLREVQLRVQRDRQC 152
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 320 IILGGEADIGEFPWQVAIALD---GMFFCGGALLNEHFVLTAAHC 361
II G E+ P+ + + G CGG L+ E FVLTAAHC
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHC 45
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 8/48 (16%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHV 411
+GGPL +V GIVSYG + + +P P+++TRVS ++ WI
Sbjct: 181 SGGPLLCN----NVAHGIVSYGKS--SGVP--PEVFTRVSSFLPWIRT 220
>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|1HYL|B Chain B, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|2HLC|A Chain A, Hl Collagenase Structure At 1.7a Resolution
pdb|2HLC|B Chain B, Hl Collagenase Structure At 1.7a Resolution
Length = 230
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 185 RRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGE---SFIGKRGHVVGWGV 241
R++ HS F+P ND+AL+++ V T IQP+ LP E F V GWG
Sbjct: 72 ERIISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQ 130
Query: 242 TSFPMGEPSPTLQKLEVKVLSNARCST-----VIEESIGIGMLCAAPDETQGTCF 291
++ + LQ V+ N RC+ +I ES +C + + CF
Sbjct: 131 SN----TDTVILQYTYNLVIDNDRCAQEYPPGIIVES----TICGDTSDGKSPCF 177
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 320 IILGGEADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCI 362
II G EA G FP+Q + + +CGG+L++ ++LTAAHC+
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCV 47
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN 412
+GGP ++L G+VS+ V+G P ++RV+ Y+ WI N
Sbjct: 180 SGGPFVLSDK--NLLIGVVSF-VSGAGCESGKPVGFSRVTSYMDWIQQN 225
>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human
Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa]
pdb|1A5H|A Chain A, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
pdb|1A5H|B Chain B, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
Length = 252
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVN 412
+GGPL DG L GI+S+G+ GC P +YT+V+ Y+ WI N
Sbjct: 203 SGGPLVCLNDGRMTLVGIISWGL-GCG-QKDVPGVYTKVTNYLDWIRDN 249
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 326 ADIGEFPWQVAI------ALDGMFFCGGALLNEHFVLTAAHCIMTGGP 367
ADI PWQ AI + F CGG L++ ++L+AAHC P
Sbjct: 7 ADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFP 54
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Query: 184 VRRVLFHSHFHPFVLSNDIALLQL----DRPVPLTGTIQPVCLPQKGESFIG-KRGHVVG 238
V + + H F NDIALLQL R + ++ VCLP + G
Sbjct: 79 VEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSG 138
Query: 239 WGVTSFPMGEPSPTLQKLEVKVLSNARCST--VIEESIGIGMLCAAPDETQG 288
+G S L++ V++ ++RC++ ++ ++ MLCA + G
Sbjct: 139 YGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGG 190
>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin
Length = 234
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT 364
+I G E +I E VA FFC G L+NE +VLTAAHC T
Sbjct: 1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCDNT 45
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
+ + LG H LNE R + + + + VL DI L++LD V + I P
Sbjct: 45 TNFQMKLGVHSKKVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVP 104
Query: 220 VCLPQKGESFIGKRGHVVGWG 240
+ +G H++GWG
Sbjct: 105 L-SLPSSPPSVGSVCHIMGWG 124
>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The
Molecular Determinants Of Substrate Specificity
Length = 234
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
LG H +T+ T + V++ + + P D+ LLQL + + + LP+K
Sbjct: 52 LGAHSITREEPTKQIML-VKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKK 110
Query: 226 GESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV----IEESIGIGMLC 280
G+ G V GWG T S TL+++E+ ++ C+ IG+ M+C
Sbjct: 111 GDDVKPGTMCQVAGWGRT-HNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVC 169
Query: 281 AA 282
A
Sbjct: 170 AG 171
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
II G E P+ V ++LD C GAL+ + +VLTAAHC
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHC 42
>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 253
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 313 YRQPRRRIILGGEADIGEFPWQVAIAL--DGMFF--CGGALLNEHFVLTAAHCIMT 364
+ +P R++ G +A + WQV++ DG F CGG+L+ +V+TA HCI T
Sbjct: 5 FSRPSSRVVNGEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIST 60
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 15/133 (11%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSN------DIALLQLDRPVPLTGTIQP 219
LG++D + L + V LF HP SN DIAL++L R L +Q
Sbjct: 68 LGEYDRSVLQGSEQVIPINAGDLF---VHPLWNSNCVACGNDIALVKLSRSAQLGDKVQL 124
Query: 220 VCLPQKGESFIGKR-GHVVGWGVTSFPMGEPSP-TLQKLEVKVLSNARCSTVIEESIGIG 277
LP G+ + ++ GWG G P P LQ+ + V+ CS I +
Sbjct: 125 ANLPPAGDILPNEAPCYISGWG--RLYTGGPLPDKLQEALLPVVDYEHCSQYDWWGITVK 182
Query: 278 --MLCAAPDETQG 288
M+CA D G
Sbjct: 183 KTMVCAGGDTRSG 195
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 364 TGGPLTF-EQDGYHVLAGIVSY-GVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL DG + G+ S+ GC + P ++TRVS +I WI+
Sbjct: 200 SGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKK-PTVFTRVSAFIDWIN 247
>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|B Chain B, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|C Chain C, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
Length = 241
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 364 TGGPLTFEQDGYHVL---AGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNA 413
+GGPL G V+ + +VS G+ C +P YP +YTRVS Y+ WI N+
Sbjct: 191 SGGPLNCPDGGTRVVGVTSWVVSSGLGAC--LPDYPSVYTRVSAYLGWIGDNS 241
>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDG|B Chain B, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDH|A Chain A, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|B Chain B, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|C Chain C, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|D Chain D, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDI|A Chain A, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|B Chain B, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|C Chain C, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|D Chain D, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|E Chain E, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|F Chain F, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|G Chain G, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|H Chain H, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|I Chain I, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|J Chain J, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|K Chain K, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|L Chain L, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|M Chain M, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|N Chain N, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|O Chain O, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|P Chain P, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
Length = 223
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMT 364
II G + PWQ A+ ++ FC G L++ +VL+AAHC
Sbjct: 1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQN 45
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
LG H L E + H ++ +L+ND+ L++LD V + TI+ + + +
Sbjct: 51 LGLHSLEADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQ 110
Query: 226 GESFIGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDE 285
+ G V GWG+ G LQ + V V+S CS + + M CA +
Sbjct: 111 CPT-AGNSCLVSGWGL--LANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQ 167
Query: 286 TQ 287
Q
Sbjct: 168 DQ 169
>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt
Length = 229
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 320 IILGGEADIGEFPWQVA-IALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
++ G A GEFP+ V I + FCGGAL + VLTAAHC+ G T
Sbjct: 1 VVGGTRAAQGEFPFMVRLINEENEGFCGGALYAQDIVLTAAHCVSGSGNNT 51
>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|D Chain D, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 242
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
II G +A +G FPWQV + G GGALL + ++LTAAH +
Sbjct: 1 IIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILTAAHTL 41
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 184 VRRVLFHSHF---HPFVLSNDIALLQLDRPVPLTGTIQPVCLPQKGESF-IGKRGHVVGW 239
+RRV H + + DIALL+L+ V L + P+CLP + +G G+V G+
Sbjct: 74 IRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGF 133
Query: 240 GV 241
GV
Sbjct: 134 GV 135
>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor
Length = 240
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 346 GGALLNEHFVLTAAHCIMTG-------GPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDL 398
G LNE + A I +G GPL EQ ++ G++ G GCAI P+ P +
Sbjct: 154 GKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPG-RGCAI-PNRPGI 211
Query: 399 YTRVSEYIRWIH 410
+ RV+ Y +WIH
Sbjct: 212 FVRVAYYAKWIH 223
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 333 WQVAIALDGMFFCGGALLNEHFVLTAAHC 361
W V++ CGG+L+ E +VLTA C
Sbjct: 13 WMVSLRYRNKHICGGSLIKESWVLTARQC 41
>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With
The Sema Domain Of The Met Receptor
Length = 234
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 346 GGALLNEHFVLTAAHCIMTG-------GPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDL 398
G LNE + A I +G GPL EQ ++ G++ G GCAI P+ P +
Sbjct: 154 GKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPG-RGCAI-PNRPGI 211
Query: 399 YTRVSEYIRWIH 410
+ RV+ Y +WIH
Sbjct: 212 FVRVAYYAKWIH 223
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 333 WQVAIALDGMFFCGGALLNEHFVLTAAHC 361
W V++ CGG+L+ E +VLTA C
Sbjct: 13 WMVSLRYRNKHICGGSLIKESWVLTARQC 41
>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom
Thrombin- Like Enzyme From Agkistrodon Halys
Length = 238
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 320 IILGGEADIGEFPWQVAI--ALDGMFFCGGALLNEHFVLTAAHC 361
II G E +I E + VA+ + FCGG L+N+ +VLTAAHC
Sbjct: 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHC 44
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL GI S+G CA P P YT+V +++ WI
Sbjct: 184 SGGPLICNGQ----FQGIASWGDDPCA-QPHKPAAYTKVFDHLDWI 224
>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|B Chain B, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|C Chain C, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|D Chain D, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|E Chain E, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|F Chain F, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
Length = 276
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G L GIVS+G GCA+ P +YTRVS ++ WI
Sbjct: 221 SGGPLVCSLQGRMTLTGIVSWG-RGCALKDK-PGVYTRVSHFLPWI 264
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 306 QFHQGTTYRQPRRRIILGGEADIGEFPWQVAIAL-----DGMFFCGGALLNEHFVLTAAH 360
+F G +PR +II G I PW AI + CGG+L++ +V++A H
Sbjct: 10 KFQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATH 69
Query: 361 CIM 363
C +
Sbjct: 70 CFI 72
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 327 DIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHCIM 363
D+ + PWQV + +G FCGG ++ E+FVLT A C +
Sbjct: 60 DLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSL 97
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 9/141 (6%)
Query: 146 GGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSH--VRRGVRRVLFHSHFHPFVLSNDIA 203
GGV + T +LH T N TS + + V H + ND++
Sbjct: 80 GGVIIRENFVLTTAKCSLLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLS 139
Query: 204 LLQLDRPVPLTGTIQPVCLPQK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEVK 259
LL+L+ P+ G PVC P+K E + RG + GW +G +L V
Sbjct: 140 LLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGN---SLTTRPVT 196
Query: 260 VLSNARCSTVIEESIGIGMLC 280
++ C V+ ++ C
Sbjct: 197 LVEGEECGQVLNVTVTTRTYC 217
>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex
pdb|1VJ9|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt464 Complex
pdb|1VJA|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt463 Complex
Length = 262
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G L GIVS+G GCA+ P +YTRVS ++ WI
Sbjct: 213 SGGPLVCSLQGRMTLTGIVSWG-RGCALKDK-PGVYTRVSHFLPWI 256
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 306 QFHQGTTYRQPRRRIILGGEADIGEFPWQVAIALDG-----MFFCGGALLNEHFVLTAAH 360
+F G +PR +II G I PW AI + CGG+L++ +V++A H
Sbjct: 2 KFQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATH 61
Query: 361 CIM 363
C +
Sbjct: 62 CFI 64
>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt
Length = 230
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 320 IILGGEADIGEFPWQVA-IALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
++ G A GEFP+ V I + FCGGAL + VLTAAHC+ G T
Sbjct: 1 VVGGTRAAQGEFPFMVRLINEENEGFCGGALYAQDIVLTAAHCVSGSGNNT 51
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 364 TGGPLTFEQDGYH--VLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNA 413
+GGP+ F +D + GIVS+G GCA P YP +YT VS + I A
Sbjct: 179 SGGPM-FRKDNADEWIQVGIVSWGY-GCA-RPGYPGVYTEVSTFASAIASAA 227
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 327 DIGEFPWQVAIA-LDGMFFCGGALLNEHFVLTAAHCIM 363
D+ + PWQV + +G FCGG ++ E+FVLT A C +
Sbjct: 101 DLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSL 138
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 9/142 (6%)
Query: 145 VGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSH--VRRGVRRVLFHSHFHPFVLSNDI 202
GGV + T +LH T N TS + + V H + ND+
Sbjct: 120 CGGVIIRENFVLTTAKCSLLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDL 179
Query: 203 ALLQLDRPVPLTGTIQPVCLPQK--GESFI--GKRGHVVGWGVTSFPMGEPSPTLQKLEV 258
+LL+L+ P+ G PVC P+K E + RG + GW +G +L V
Sbjct: 180 SLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDLGN---SLTTRPV 236
Query: 259 KVLSNARCSTVIEESIGIGMLC 280
++ C V+ ++ C
Sbjct: 237 TLVEGEECGQVLNVTVTTRTYC 258
>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
pdb|3IG6|D Chain D, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
Length = 253
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G L GIVS+G GCA+ P +YTRVS ++ WI
Sbjct: 198 SGGPLVCSLQGRMTLTGIVSWG-RGCALKDK-PGVYTRVSHFLPWI 241
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 321 ILGGE-ADIGEFPWQVAIAL-----DGMFFCGGALLNEHFVLTAAHCIM 363
I+GGE I PW AI + CGG+L++ +V++A HC +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFI 49
>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
pdb|1LMW|D Chain D, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
Length = 253
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G L GIVS+G GCA+ P +YTRVS ++ WI
Sbjct: 198 SGGPLVCSLQGRMTLTGIVSWG-RGCALKDK-PGVYTRVSHFLPWI 241
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 321 ILGGE-ADIGEFPWQVAIAL-----DGMFFCGGALLNEHFVLTAAHCIM 363
I+GGE I PW AI + CGG+L++ +V++A HC +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFI 49
>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1O5B|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5C|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
Length = 253
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G L GIVS+G GCA+ P +YTRVS ++ WI
Sbjct: 198 SGGPLVCSLQGRMTLTGIVSWG-RGCALKDK-PGVYTRVSHFLPWI 241
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 321 ILGGE-ADIGEFPWQVAIAL-----DGMFFCGGALLNEHFVLTAAHCIM 363
I+GGE I PW AI + CGG+L++ +V++A HC +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFI 49
>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJ8|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJA|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJB|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1O3P|B Chain B, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1C5W|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5X|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Y|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Z|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GJ9|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJD|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJC|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
Length = 253
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G L GIVS+G GCA+ P +YTRVS ++ WI
Sbjct: 198 SGGPLVCSLQGRMTLTGIVSWG-RGCALKDK-PGVYTRVSHFLPWI 241
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 321 ILGGE-ADIGEFPWQVAIAL-----DGMFFCGGALLNEHFVLTAAHCIM 363
I+GGE I PW AI + CGG+L++ +V++A HC +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFI 49
>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed
By Crystal Structure Of Human Urokinase-Type Plasminogen
Activator Complexed With A Cyclic Peptidyl Inhibitor,
Upain-1
pdb|2O8T|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145Q) IN COMPLEX WITH
Inhibitors
pdb|3KGP|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KHV|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KID|U Chain U, The Crystal Structures Of 2-Aminobenzothiazole-Based
Inhibitors In Complexes With Urokinase-Type Plasminogen
Activator
pdb|3M61|U Chain U, Crystal Structure Of Complex Of Urokinase And A Upain-1
Variant(W3a) In Ph4.6 Condition
pdb|3OX7|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph4.6
pdb|3OY5|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph7.4
pdb|3OY6|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh036 At Ph4.6
pdb|3QN7|A Chain A, Potent And Selective Bicyclic Peptide Inhibitor (Uk18) Of
Human Urokinase-Type Plasminogen Activator(Upa)
Length = 253
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G L GIVS+G GCA+ P +YTRVS ++ WI
Sbjct: 198 SGGPLVCSLQGRMTLTGIVSWG-RGCALKDK-PGVYTRVSHFLPWI 241
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 321 ILGGE-ADIGEFPWQVAIAL-----DGMFFCGGALLNEHFVLTAAHCIM 363
I+GGE I PW AI + CGG+L++ +V++A HC +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFI 49
>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex
pdb|1F5K|U Chain U, Urokinase Plasminogen Activator B-Chain-Benzamidine
Complex
pdb|1F5L|A Chain A, Urokinase Plasminogen Activator B-Chain-Amiloride Complex
pdb|1F92|A Chain A, Urokinase Plasminogen Activator B Chain-Uki-1d Complex
pdb|2R2W|U Chain U, Urokinase Plasminogen Activator B-Chain-Gppe Complex
pdb|2VIN|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIO|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIP|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIQ|A Chain A, Fragment-based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-type
Plasminogen Activator
pdb|2VIV|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIW|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
Length = 253
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G L GIVS+G GCA+ P +YTRVS ++ WI
Sbjct: 198 SGGPLVCSLQGRMTLTGIVSWG-RGCALKDK-PGVYTRVSHFLPWI 241
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 321 ILGGE-ADIGEFPWQVAIAL-----DGMFFCGGALLNEHFVLTAAHCIM 363
I+GGE I PW AI + CGG+L++ +V++A HC +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFI 49
>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North
Atlantic Salmon At 1.61 Angstroms Resolution
Length = 236
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSN--DIALLQLDRPVPLTGTIQPVCLP 223
LG+H+L NE V V HS ++ ++ DIALL+L+ L +Q LP
Sbjct: 57 LGEHNL-NTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALP 115
Query: 224 QKGESFIGKR-GHVVGWGVTSFPMGEP-SPTLQKLEVKVLSNARCST--VIEESIGIGML 279
+ ++ GWG TS G P S +L++ + + +A CS+ ++ M+
Sbjct: 116 PSNQILPNNNPCYITGWGKTS--TGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMV 173
Query: 280 CAAPDETQG 288
CA G
Sbjct: 174 CAGGGANSG 182
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 321 ILGGE-ADIGEFPWQVAIAL-DGMFF---CGGALLNEHFVLTAAHCI 362
++GG A +PWQ+++ G + CGG+L+ + +V+TAAHC+
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCV 47
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGPL + +G + + G+ S+ + P ++TRVS YI W++
Sbjct: 187 SGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMN 233
>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W10|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W11|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W12|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W13|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W14|U Chain U, Urokinase Type Plasminogen Activator
pdb|3MHW|U Chain U, The Complex Crystal Structure Of Urokianse And 2-
Aminobenzothiazole
Length = 247
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G L GIVS+G GCA+ P +YTRVS ++ WI
Sbjct: 198 SGGPLVCSLQGRMTLTGIVSWG-RGCALKDK-PGVYTRVSHFLPWI 241
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 321 ILGGE-ADIGEFPWQVAIAL-----DGMFFCGGALLNEHFVLTAAHCIM 363
I+GGE I PW AI + CGG+L++ +V++A HC +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFI 49
>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWI|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWJ|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWK|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQT|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1U6Q|A Chain A, Substituted 2-naphthamadine Inhibitors Of Urokinase
Length = 245
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G L GIVS+G GCA+ P +YTRVS ++ WI
Sbjct: 198 SGGPLVCSLQGRMTLTGIVSWG-RGCALKDK-PGVYTRVSHFLPWI 241
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 321 ILGGE-ADIGEFPWQVAIAL-----DGMFFCGGALLNEHFVLTAAHCIM 363
I+GGE I PW AI + CGG+L++ +V++A HC +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFI 49
>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU8|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU9|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUB|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUC|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUD|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUE|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUF|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUG|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUH|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUI|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUJ|A Chain A, Crystal Structure Of The Urokinase
pdb|4DVA|U Chain U, The Crystal Structure Of Human Urokinase-type Plasminogen
Activator Catalytic Domain
pdb|4DW2|U Chain U, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 246
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G L GIVS+G GCA+ P +YTRVS ++ WI
Sbjct: 198 SGGPLVCSLQGRMTLTGIVSWG-RGCALKDK-PGVYTRVSHFLPWI 241
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 321 ILGGE-ADIGEFPWQVAIAL-----DGMFFCGGALLNEHFVLTAAHCIM 363
I+GGE I PW AI + CGG+L++ +V++A HC +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFI 49
>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And
5-Nitro-1h-Indole-2- Amidine
Length = 246
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G L GIVS+G GCA+ P +YTRVS ++ WI
Sbjct: 198 SGGPLVCSLQGRMTLTGIVSWG-RGCALKDK-PGVYTRVSHFLPWI 241
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 321 ILGGE-ADIGEFPWQVAIAL-----DGMFFCGGALLNEHFVLTAAHCIM 363
I+GGE I PW AI + CGG+L++ +V++A HC +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFI 49
>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWH|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQA|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQO|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
Length = 245
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G L GIVS+G GCA+ P +YTRVS ++ WI
Sbjct: 198 SGGPLVCSLQGRMTLTGIVSWG-RGCALKDK-PGVYTRVSHFLPWI 241
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 321 ILGGE-ADIGEFPWQVAIAL-----DGMFFCGGALLNEHFVLTAAHCIM 363
I+GGE I PW AI + CGG+L++ +V++A HC +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFI 49
>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With
2- Amino-5-Hydroxy-Benzimidazole
Length = 245
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G L GIVS+G GCA+ P +YTRVS ++ WI
Sbjct: 198 SGGPLVCSLQGRMTLTGIVSWG-RGCALKDK-PGVYTRVSHFLPWI 241
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 321 ILGGE-ADIGEFPWQVAIAL-----DGMFFCGGALLNEHFVLTAAHCIM 363
I+GGE I PW AI + CGG+L++ +V++A HC +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFI 49
>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI7|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI9|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
Length = 245
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL G L GIVS+G GCA+ P +YTRVS ++ WI
Sbjct: 198 SGGPLVCSLQGRMTLTGIVSWG-RGCALKDK-PGVYTRVSHFLPWI 241
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 321 ILGGE-ADIGEFPWQVAIAL-----DGMFFCGGALLNEHFVLTAAHCIM 363
I+GGE I PW AI + CGG+L++ +V++A HC +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFI 49
>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
pdb|3BEU|B Chain B, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
Length = 224
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
++ G A GEFP+ V +++ CGGAL + VLTAAHC+ G T
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMG----CGGALYAQDIVLTAAHCVSGSGNNT 46
>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|2O8W|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|3PB1|E Chain E, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 253
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
GGPL G L GIVS+G GCA+ P +YTRVS ++ WI
Sbjct: 199 GGPLVCSLQGRMTLTGIVSWG-RGCALKDK-PGVYTRVSHFLPWI 241
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 321 ILGGE-ADIGEFPWQVAIAL-----DGMFFCGGALLNEHFVLTAAHCIM 363
I+GGE I PW AI + CGG+L++ +V++A HC +
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFI 49
>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein
(Cap37)
Length = 225
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGP 367
I+ G +A +FP+ +I G CGGAL++ FV+TAA C + P
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGSHECGGALIHARFVMTAASCFQSQNP 48
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 142 ARKVGGVCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSND 201
AR V Q ++ VS +VL G +DL + S + + + + P ND
Sbjct: 33 ARFVMTAASCFQSQNPGVSTVVL--GAYDLRRRERQSRQTFSISS-MSENGYDPQQNLND 89
Query: 202 IALLQLDRPVPLTGTIQPVCLP-QKGESFIGKRGHVVGWG 240
+ LLQLDR LT ++ + LP Q G R V GWG
Sbjct: 90 LMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWG 129
>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin
Length = 222
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
++ G A GEFP+ V +++ CGGAL + VLTAAHC+ G T
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMG----CGGALYAQDIVLTAAHCVSGSGNNT 46
>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin
Length = 223
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
++ G A GEFP+ V +++ CGGAL + VLTAAHC+ G T
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMG----CGGALYAQDIVLTAAHCVSGSGNNT 46
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 364 TGGPLTFEQDGYH--VLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNA 413
+GGP+ F +D + GIVS+G GCA P YP +YT VS + I A
Sbjct: 172 SGGPM-FRKDNADEWIQVGIVSWGY-GCA-RPGYPGVYTEVSTFASAIASAA 220
>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A
pdb|1OP8|B Chain B, Crystal Structure Of Human Granzyme A
pdb|1OP8|C Chain C, Crystal Structure Of Human Granzyme A
pdb|1OP8|D Chain D, Crystal Structure Of Human Granzyme A
pdb|1OP8|E Chain E, Crystal Structure Of Human Granzyme A
pdb|1OP8|F Chain F, Crystal Structure Of Human Granzyme A
Length = 234
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
LG H +T+ T + V++ + + P D+ LLQL + + + LP+K
Sbjct: 52 LGAHSITREEPTKQIML-VKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKK 110
Query: 226 GESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTV----IEESIGIGMLC 280
G+ G V GWG T S TL+++ + ++ C+ IG+ M+C
Sbjct: 111 GDDVKPGTMCQVAGWGRT-HNSASWSDTLREVNITIIDRKVCNDRNHYNFNPVIGMNMVC 169
Query: 281 AA 282
A
Sbjct: 170 AG 171
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
II G E P+ V ++LD C GAL+ + +VLTAAHC
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHC 42
>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With
Benzamidine
Length = 223
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
++ G A GEFP+ V +++ CGGAL + VLTAAHC+ G T
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMG----CGGALYAQDIVLTAAHCVSGSGNNT 46
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 364 TGGPLTFEQDGYH--VLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNA 413
+GGP+ F +D + GIVS+G GCA P YP +YT VS + I A
Sbjct: 172 SGGPM-FRKDNADEWIQVGIVSWGY-GCA-RPGYPGVYTEVSTFASAIASAA 220
>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin
At 1.7 Angstroms Resolution
Length = 223
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLT 369
++ G A GEFP+ V +++ CGGAL + VLTAAHC+ G T
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMG----CGGALYAQDIVLTAAHCVSGSGNNT 46
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 364 TGGPLTFEQDGYH--VLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIHVNA 413
+GGP+ F +D + GIVS+G GCA P YP +YT VS + I A
Sbjct: 172 SGGPM-FRKDNADEWIQVGIVSWGY-GCA-RPGYPGVYTEVSTFASAIASAA 220
>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin)
pdb|1FUJ|B Chain B, Pr3 (Myeloblastin)
pdb|1FUJ|C Chain C, Pr3 (Myeloblastin)
pdb|1FUJ|D Chain D, Pr3 (Myeloblastin)
Length = 221
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 154 LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
LRD P + + LG H++ + E + V +V +++ L NDI L+QL P L
Sbjct: 46 LRDIPQRLVNVVLGAHNV-RTQEPTQQHFSVAQVFLNNYDAENKL-NDILLIQLSSPANL 103
Query: 214 TGTIQPVCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLS 262
+ ++ V LPQ+ + G + +GWG P+ LQ+L V V++
Sbjct: 104 SASVATVQLPQQDQPVPHGTQCLAMGWGRVG-AHDPPAQVLQELNVTVVT 152
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 320 IILGGEADIGEFPWQVAIALDG---MFFCGGALLNEHFVLTAAHCI 362
I+ G EA P+ ++ + G FCGG L++ FVLTAAHC+
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCL 46
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL DG ++ GI S+ + GCA +PD +TRV+ Y+ WI
Sbjct: 176 SGGPLIC--DG--IIQGIDSFVIWGCATR-LFPDFFTRVALYVDWI 216
>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
pdb|1UHB|A Chain A, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 125
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F+ L NDI L++L P L +
Sbjct: 44 SRIQVRLGEHNIDVL-EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVAT 102
Query: 220 VCLPQKGESFIGKRGHVVGWGVT 242
V LP+ + G + GWG T
Sbjct: 103 VSLPRSCAA-AGTECLISGWGNT 124
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G P+QV++ G FCGG+L+N +V++AAHC
Sbjct: 1 IVGGYTCAANSIPYQVSLN-SGSHFCGGSLINSQWVVSAAHC 41
>pdb|1EPT|B Chain B, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
Length = 82
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 160 SELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQP 219
S + + LG+H++ L E + +++ H +F+ L NDI L++L P L +
Sbjct: 1 SRIQVRLGEHNIDVL-EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVAT 59
Query: 220 VCLPQKGESFIGKRGHVVGWGVT 242
V LP+ + G + GWG T
Sbjct: 60 VSLPRSCAA-AGTECLISGWGNT 81
>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
pdb|2ODQ|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
Length = 509
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 323 GGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGG 366
+D PW V I C GAL+++ +VLTAAHC G
Sbjct: 227 ANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGN 270
>pdb|2I6Q|A Chain A, Complement Component C2a
pdb|2I6S|A Chain A, Complement Component C2a
Length = 517
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 323 GGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGG 366
+D PW V I C GAL+++ +VLTAAHC G
Sbjct: 235 ANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGN 278
>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
pdb|1RS0|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With Di-Isopropyl-Phosphate (Dip)
pdb|1RTK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With 4-Guanidinobenzoic Acid
Length = 497
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 326 ADIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCI 362
D + PWQ I++ G C GA+++E+FVLTAAHC
Sbjct: 221 TDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCF 261
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 187 VLFHSHFH---------PFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
VLFH +++ P D+AL++L + TI+P+CLP
Sbjct: 286 VLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 331
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 327 DIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCI 362
D + PWQ I++ G C GA+++E+FVLTAAHC
Sbjct: 455 DYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCF 494
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 187 VLFHSHFH---------PFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
VLFH +++ P D+AL++L + TI+P+CLP
Sbjct: 519 VLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 564
>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|J Chain J, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|K Chain K, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|L Chain L, C3 Convertase (C3bbb) Stabilized By Scin
Length = 507
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 327 DIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCI 362
D + PWQ I++ G C GA+++E+FVLTAAHC
Sbjct: 230 DYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCF 269
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 187 VLFHSHFH---------PFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
VLFH +++ P D+AL++L + TI+P+CLP
Sbjct: 294 VLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 339
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 327 DIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCI 362
D + PWQ I++ G C GA+++E+FVLTAAHC
Sbjct: 474 DYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCF 513
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 187 VLFHSHFH---------PFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
VLFH +++ P D+AL++L + TI+P+CLP
Sbjct: 538 VLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 583
>pdb|1DLE|A Chain A, Factor B Serine Protease Domain
pdb|1DLE|B Chain B, Factor B Serine Protease Domain
Length = 298
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 327 DIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCI 362
D + PWQ I++ G C GA+++E+FVLTAAHC
Sbjct: 23 DYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCF 62
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 187 VLFHSHFH---------PFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
VLFH +++ P D+AL++L + TI+P+CLP
Sbjct: 87 VLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 132
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 327 DIGEFPWQVAIAL----DGMFFCGGALLNEHFVLTAAHCI 362
D + PWQ I++ G C GA+++E+FVLTAAHC
Sbjct: 464 DYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCF 503
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 187 VLFHSHFH---------PFVLSNDIALLQLDRPVPLTGTIQPVCLP 223
VLFH +++ P D+AL++L + TI+P+CLP
Sbjct: 528 VLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 573
>pdb|1EPT|A Chain A, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
Length = 43
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC 361
I+ G P+QV++ G FCGG+L+N +V++AAHC
Sbjct: 1 IVGGYTCAANSIPYQVSLN-SGSHFCGGSLINSQWVVSAAHC 41
>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom
pdb|1BQY|B Chain B, Plasminogen Activator (tsv-pa) From Snake Venom
Length = 234
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 323 GGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTF 370
G E +I E V + F CGG L+N+ +V+TAAHC L F
Sbjct: 4 GDECNINEHRSLVVLFNSNGFLCGGTLINQDWVVTAAHCDSNNFQLLF 51
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL + GIVS+G C P P +YT+V +Y+ WI
Sbjct: 180 SGGPLICNG----IFQGIVSWGGHPCG-QPGEPGVYTKVFDYLDWI 220
>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP
Length = 234
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 321 ILGGEADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCIMTGG-PLTFEQDGYHVL 378
++GG G PW V++ G FCGG+L+ E ++LTA C + PLT GY V
Sbjct: 1 VVGGHP--GNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLT----GYEVW 54
Query: 379 AGIV 382
G +
Sbjct: 55 LGTL 58
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
GGPL VL GI+ CA +P ++TRVS ++ WIH
Sbjct: 179 GGPLACFTHNSWVLEGIIIPNRV-CA-RSRWPAVFTRVSVFVDWIH 222
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 200 NDIALLQLDRPVPLTGTIQPVCLPQKGESFI---GKRGHVVGWGVTSFPMGEPSPTLQKL 256
+ + LL+L+R V L + +CLP E ++ G + + GWG T G + T+ +
Sbjct: 84 SQLVLLKLERSVTLNQRVALICLPP--EWYVVPPGTKCEIAGWGETK---GTGNDTVLNV 138
Query: 257 E-VKVLSNARCS 267
+ V+SN C+
Sbjct: 139 ALLNVISNQECN 150
>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
Length = 240
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 330 EFPWQVAIAL--DGMFF--CGGALLNEHFVLTAAHCIMT 364
+ WQV++ DG F CGG+L+ +V+TA HCI T
Sbjct: 9 SWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIST 47
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSN------DIALLQLDRPVPLTGTIQP 219
LG++D + L + V LF HP SN DIAL++L R L +Q
Sbjct: 55 LGEYDRSVLEGSEQVIPINAGDLF---VHPLWNSNCVACGNDIALVKLSRSAQLGDKVQL 111
Query: 220 VCLPQKGESFIGKR-GHVVGWGVTSFPMGEPSP-TLQKLEVKVLSNARCSTVIEESIGIG 277
LP G+ + ++ GWG G P P LQ+ + + CS I +
Sbjct: 112 ANLPPAGDILPNEAPCYISGWG--RLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVK 169
Query: 278 --MLCAAPDETQG 288
M+CA D G
Sbjct: 170 KTMVCAGGDTRSG 182
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 364 TGGPLTF-EQDGYHVLAGIVSY-GVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL DG + G+ S+ GC + P ++TRVS +I WI
Sbjct: 187 SGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKK-PTVFTRVSAFIDWI 233
>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9
Angstroms Resolution
Length = 226
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 344 FCGGALLNEHFVLTAAHC 361
FCGG L+ +FVLTAAHC
Sbjct: 29 FCGGFLIRRNFVLTAAHC 46
>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFQ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFS|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFZ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFZ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AG1|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|B Chain B, Human Chymase - Fynomer Complex
Length = 226
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 344 FCGGALLNEHFVLTAAHC 361
FCGG L+ +FVLTAAHC
Sbjct: 29 FCGGFLIRRNFVLTAAHC 46
>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex
With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|1T31|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|2HVX|A Chain A, Discovery Of Potent, Orally Active, Nonpeptide Inhibitors
Of Human Mast Cell Chymase By Using Structure-Based Drug
Design
pdb|3S0N|A Chain A, Crystal Structure Of Human Chymase With Benzimidazolone
Inhibitor
Length = 226
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 344 FCGGALLNEHFVLTAAHC 361
FCGG L+ +FVLTAAHC
Sbjct: 29 FCGGFLIRRNFVLTAAHC 46
>pdb|1NN6|A Chain A, Human Pro-Chymase
Length = 228
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 344 FCGGALLNEHFVLTAAHC 361
FCGG L+ +FVLTAAHC
Sbjct: 31 FCGGFLIRRNFVLTAAHC 48
>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small
Molecule Inhibitor
Length = 226
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 344 FCGGALLNEHFVLTAAHC 361
FCGG L+ +FVLTAAHC
Sbjct: 29 FCGGFLIRRNFVLTAAHC 46
>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
pdb|1AKS|B Chain B, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
Length = 98
Score = 32.0 bits (71), Expect = 0.58, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ L GIVS+G GCA + P +YT+V Y+ WI
Sbjct: 52 SGGPVVCNGQ----LQGIVSWGY-GCA-QKNKPGVYTKVCNYVNWIQ 92
>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 98
Score = 32.0 bits (71), Expect = 0.61, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
+GGP+ L GIVS+G GCA + P +YT+V Y+ WI
Sbjct: 52 SGGPVVCNGQ----LQGIVSWGY-GCA-QKNKPGVYTKVCNYVNWIQ 92
>pdb|2C5S|A Chain A, Crystal Structure Of Bacillus Anthracis Thii, A Trna-
Modifying Enzyme Containing The Predicted Rna-Binding
Thump Domain
Length = 413
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 241 VTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPDETQGTCFVPVSPVGYT 300
VT++P+ P T+ KLE+ I E IG + P E T F P SP
Sbjct: 317 VTNYPVIRPLITMDKLEI---------IKIAEEIGTYDISIRPYEDCCTVFTPASPATKP 367
Query: 301 KKH 303
K+
Sbjct: 368 KRE 370
>pdb|2RDL|A Chain A, Hamster Chymase 2
pdb|2RDL|B Chain B, Hamster Chymase 2
Length = 226
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 345 CGGALLNEHFVLTAAHC 361
C G L+ +FV+TAAHC
Sbjct: 30 CSGFLIRRNFVMTAAHC 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,832,862
Number of Sequences: 62578
Number of extensions: 553955
Number of successful extensions: 2115
Number of sequences better than 100.0: 352
Number of HSP's better than 100.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 991
Number of HSP's gapped (non-prelim): 917
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)