RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15063
(417 letters)
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 110 bits (276), Expect = 6e-28
Identities = 50/141 (35%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 154 LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
+ + S + LG HDL+ NE V++V+ H +++P NDIALL+L RPV L
Sbjct: 44 VYSSAPSNYTVRLGSHDLSS-NEGGGQVIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTL 102
Query: 214 TGTIQPVCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE 272
+ ++P+CLP G + G V GWG TS G LQ++ V ++SNA C
Sbjct: 103 SDNVRPICLPSSGYNLPAGTTCTVSGWGRTS-EGGPLPDVLQEVNVPIVSNAECKRAYSY 161
Query: 273 SIGI--GMLCAAPDET-QGTC 290
I MLCA E + C
Sbjct: 162 GGTITDNMLCAGGLEGGKDAC 182
Score = 71.2 bits (175), Expect = 3e-14
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 7/62 (11%)
Query: 321 ILGG-EADIGEFPWQVAI-ALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVL 378
I+GG EA IG FPWQV++ G FCGG+L++ +VLTAAHC+ + P Y V
Sbjct: 1 IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVYSSAP-----SNYTVR 55
Query: 379 AG 380
G
Sbjct: 56 LG 57
Score = 60.0 bits (146), Expect = 2e-10
Identities = 26/46 (56%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWIH 410
GGPL +G VL GIVS+G GCA P+YP +YTRVS Y+ WI
Sbjct: 187 GGPLVCNDNGRGVLVGIVSWGS-GCAR-PNYPGVYTRVSSYLDWIQ 230
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 108 bits (273), Expect = 1e-27
Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 6/141 (4%)
Query: 154 LRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
+R + S + + LG HDL+ + V +V+ H +++P NDIALL+L PV L
Sbjct: 45 VRGSDPSNIRVRLGSHDLS--SGEEGQVIKVSKVIIHPNYNPSTYDNDIALLKLKEPVTL 102
Query: 214 TGTIQPVCLPQKGESFI-GKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEE 272
+ ++P+CLP + G V GWG TS G TLQ++ V ++SNA C
Sbjct: 103 SDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSG 162
Query: 273 SIGI--GMLCA-APDETQGTC 290
I MLCA + + C
Sbjct: 163 GGAITDNMLCAGGLEGGKDAC 183
Score = 71.2 bits (175), Expect = 4e-14
Identities = 25/46 (54%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 319 RIILGGEADIGEFPWQVAIAL-DGMFFCGGALLNEHFVLTAAHCIM 363
RI+ G EA+IG FPWQV++ G FCGG+L++ +VLTAAHC+
Sbjct: 1 RIVGGSEANIGSFPWQVSLQYGGGRHFCGGSLISPRWVLTAAHCVR 46
Score = 57.3 bits (139), Expect = 2e-09
Identities = 26/45 (57%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
GGPL DG VL GIVS+G GCA P P +YTRVS Y+ WI
Sbjct: 188 GGPLVC-NDGRWVLVGIVSWGS-GCA-RPGKPGVYTRVSSYLDWI 229
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 85.2 bits (211), Expect = 4e-19
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 166 LGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSNDIALLQLDRPVPLTGTIQPVCLPQK 225
LG H++ L E + V++V+ H +++P NDIALL+L PV L T++P+CLP
Sbjct: 54 LGAHNI-VLREGGEQKFDVKKVIVHPNYNPDTD-NDIALLKLKSPVTLGDTVRPICLPTA 111
Query: 226 GESF-IGKRGHVVGWGVTSFPMGEPSPTLQKLEVKVLSNARCSTVIEESIGIGMLCAAPD 284
+G V GWG T TLQ++ V V+S C + ++ M+CA
Sbjct: 112 SSDLPVGTTCTVSGWGNTKT--LGLPDTLQEVTVPVVSRETCRSAYGGTVTDNMICAGAG 169
Query: 285 ETQGTCF 291
+ C
Sbjct: 170 G-KDACQ 175
Score = 58.6 bits (142), Expect = 5e-10
Identities = 25/44 (56%), Positives = 35/44 (79%), Gaps = 2/44 (4%)
Query: 321 ILGG-EADIGEFPWQVAIAL-DGMFFCGGALLNEHFVLTAAHCI 362
I+GG EA G FPWQV++ + G FCGG+L++E++VLTAAHC+
Sbjct: 1 IVGGDEAQPGSFPWQVSLQVSSGKHFCGGSLISENWVLTAAHCV 44
Score = 41.3 bits (97), Expect = 4e-04
Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 5/46 (10%)
Query: 364 TGGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
+GGPL DG L GIVS+G GCA +YP +YT VS Y+ WI
Sbjct: 178 SGGPL-VCSDGE--LIGIVSWGY-GCAS-GNYPGVYTPVSSYLDWI 218
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 47.2 bits (112), Expect = 9e-06
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 319 RIILGGEADIGEFPWQVAIALDG-----MFFCGGALLNEHFVLTAAHCIMTGGPLT 369
RII G A+ GE+P VA+ FCGG+ L +VLTAAHC P++
Sbjct: 32 RIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPIS 87
Score = 37.9 bits (88), Expect = 0.007
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 365 GGPLTFEQDGYHVLAGIVSYGVTGCAIMPSYPDLYTRVSEYIRWI 409
GGP+ + + V G+VS+G GC P +YT VS Y WI
Sbjct: 231 GGPIFHKGEEGRVQRGVVSWGDGGCG-GTLIPGVYTNVSNYQDWI 274
Score = 29.5 bits (66), Expect = 3.8
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 171 LTQLNETSHVRRG-VRRVLFHSHFHPFVLSNDIALLQLDRPVPL 213
+ LN++S RG VR + H + P L NDIA+L+L R L
Sbjct: 94 VVDLNDSSQAERGHVRTIYVHEFYSPGNLGNDIAVLELARAASL 137
>gnl|CDD|128922 smart00678, WWE, Domain in Deltex and TRIP12 homologues. Possibly
involved in regulation of ubiquitin-mediated
proteolysis.
Length = 73
Score = 30.0 bits (68), Expect = 0.32
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 169 HDLTQLNETSHVRRGVRRVLFHSHF 193
+ +TQ N+ + R VRRV + +
Sbjct: 48 NAMTQYNQATGTTRKVRRVTYSPYS 72
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this
family (Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 30.3 bits (69), Expect = 0.42
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 5 EDKVKQIKEILAQLSPSDYS-EDNGSDDYDYYDEELPEQLKYLTLFEEKYGKGRGNGGSI 63
E+K+++IK++ A L +D S ED D+D E+ E++ LF + Y
Sbjct: 27 EEKLEKIKKV-AGLRGADLSEEDLADGDFD--PEKWDEEMA--KLFGDDYY---EEEDEE 78
Query: 64 SDPFYKGSKDIMGD 77
P + +DI
Sbjct: 79 EKPTWDDDEDIGDL 92
>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
Length = 461
Score = 32.2 bits (73), Expect = 0.60
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 5 EDKVKQIKEILAQLSPSDYSEDNGSDDYDYYDEELPEQLKYLTLFEEKYGKGR---GNGG 61
++ QI+E+LA++ S+ D+G++ D D++ P+ + Y ++Y + G+G
Sbjct: 65 AARLCQIQELLAEMRSSEEYPDSGAEAEDDDDDDAPDDVAY----PDEYAEDDFLPGDGA 120
Query: 62 SISDP 66
DP
Sbjct: 121 PDHDP 125
>gnl|CDD|220189 pfam09342, DUF1986, Domain of unknown function (DUF1986). This
domain is found in serine proteases and is predicted to
contain disulphide bonds.
Length = 267
Score = 30.8 bits (69), Expect = 1.3
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 327 DIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCI 362
+ +PW + ++G + C G L++ +VL + C+
Sbjct: 12 EELHWPWIAKVYVEGNYRCTGVLIDLSWVLVSHSCL 47
>gnl|CDD|226119 COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid
transport and metabolism].
Length = 251
Score = 30.0 bits (68), Expect = 1.7
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 331 FPWQVAIALD---GMFFCGGALLNEHFVLTAAHCIMT 364
FP+ + + G L+ + VLTA HCI +
Sbjct: 49 FPYSAVVQFEAATGRLCTAATLIGPNTVLTAGHCIYS 85
>gnl|CDD|178170 PLN02555, PLN02555, limonoid glucosyltransferase.
Length = 480
Score = 30.5 bits (69), Expect = 1.8
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 197 VLSNDIALLQLDRPVPLTGTIQPVCLPQKGESFIGKRGHVVGWGVTSFPMGEPS 250
VL++ ++ L + RP ++P LP++ G +G +V W + PS
Sbjct: 302 VLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPS 355
>gnl|CDD|178296 PLN02693, PLN02693, IAA-amino acid hydrolase.
Length = 437
Score = 30.4 bits (68), Expect = 1.9
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 9 KQIKEILAQLSPSDYSEDNGSDDYDYYDEELPEQLKYLTLFEEKYGKGRGNGGSISDPFY 68
K ++++L Q + + + + GS+D+ Y+ E +P L + +E G S P Y
Sbjct: 345 KVVRDLLGQEAFVEAAPEMGSEDFSYFAETIPGHFSLLGMQDETNGY-----ASSHSPLY 399
Query: 69 KGSKDIM 75
+ ++D++
Sbjct: 400 RINEDVL 406
>gnl|CDD|227844 COG5557, COG5557, Polysulphide reductase [Energy production and
conversion].
Length = 401
Score = 29.8 bits (67), Expect = 2.8
Identities = 20/90 (22%), Positives = 25/90 (27%), Gaps = 22/90 (24%)
Query: 322 LGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHCIMTGGPLTFEQDGYHVLAGI 381
LG FPW + IA D + F G L A I++ F + Y A
Sbjct: 39 LGSTGMRNGFPWGLYIAFD-LLFVG---------LAAGGLILSSAVYVFNRGQYKPFARP 88
Query: 382 VSYGVTGCAI------------MPSYPDLY 399
I YP Y
Sbjct: 89 ALLASLFGIILAGLSILPDIGRYWLYPYFY 118
>gnl|CDD|198319 cd03210, GST_C_Pi, C-terminal, alpha helical domain of Class Pi
Glutathione S-transferases. Glutathione S-transferase
(GST) C-terminal domain family, Class Pi subfamily;
GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins,
and products of oxidative stress. The GST fold contains
an N-terminal thioredoxin-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. GSH binds to the
N-terminal domain while the hydrophobic substrate
occupies a pocket in the C-terminal domain. Class Pi
GST is a homodimeric eukaryotic protein. The human
GSTP1 is mainly found in erythrocytes, kidney, placenta
and fetal liver. It is involved in stress responses and
in cellular proliferation pathways as an inhibitor of
JNK (c-Jun N-terminal kinase). Following oxidative
stress, monomeric GSTP1 dissociates from JNK and
dimerizes, losing its ability to bind JNK and causing
an increase in JNK activity, thereby promoting
apoptosis. GSTP1 is expressed in various tumors and is
the predominant GST in a wide range of cancer cells. It
has been implicated in the development of
multidrug-resistant tumors.
Length = 126
Score = 28.1 bits (63), Expect = 3.9
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 25 EDNGSDDYDYYDEELPEQLKYL-TLFEEKYGKGRGNGGSIS 64
+ G DDY ++LPEQLK L + GKG G IS
Sbjct: 29 YEAGKDDYI---KDLPEQLKPFEKLLAKNNGKGFIVGDKIS 66
>gnl|CDD|225463 COG2911, COG2911, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 1278
Score = 29.6 bits (67), Expect = 4.4
Identities = 12/73 (16%), Positives = 18/73 (24%), Gaps = 8/73 (10%)
Query: 320 IILGGEADIGEFPWQVAIALDGMFFCGGALLNEHFVLTAAHC-IMTGGPLTFEQDGYHVL 378
+ IG + Q A AL + AHC L Q
Sbjct: 689 GTIRLSTAIGPWSLQRAAALA-------YDGKARRLNIGAHCWDNGNAELCLPQASRAGG 741
Query: 379 AGIVSYGVTGCAI 391
G + + +
Sbjct: 742 PGRIPLALNRFDL 754
>gnl|CDD|180682 PRK06761, PRK06761, hypothetical protein; Provisional.
Length = 282
Score = 29.0 bits (65), Expect = 5.2
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 1 MLSFEDKVKQI-KEILAQLSPSDYSEDNGSDDYDYYDEELPEQLKY 45
+ + K + EIL L +N ++ D Y L ++L
Sbjct: 233 RIKVLEARKNLELEILDMLKMKKEKINNTKEEIDSYRSMLKDKLTI 278
>gnl|CDD|219287 pfam07075, DUF1343, Protein of unknown function (DUF1343). This
family consists of several hypothetical bacterial
proteins of around 400 residues in length. The function
of this family is unknown.
Length = 362
Score = 29.0 bits (66), Expect = 5.3
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 200 NDIALLQLDRPVPLTGTIQPVCLPQKG-ESFIG 231
+ LDRP PL G + ESF+G
Sbjct: 109 AGKEFIVLDRPNPLGGLYVEGPVLDPEFESFVG 141
>gnl|CDD|211667 TIGR01530, nadN, NAD pyrophosphatase/5'-nucleotidase NadN. This
model describes NadN of Haemophilus influenzae and a
small number of close homologs in pathogenic,
Gram-negative bacteria. NadN is a periplasmic enzyme
that cleaves NAD (nicotinamide adenine dinucleotide) to
NMN (nicotinamide mononucleotide) and AMP. The NMN must
be converted by a 5'-nucleotidase to nicotinamide
riboside for import. NadN belongs a large family of
5'-nucleotidases and has NMN 5'-nucleotidase activity
for NMN, AMP, etc [Transport and binding proteins,
Other, Biosynthesis of cofactors, prosthetic groups, and
carriers, Pyridine nucleotides].
Length = 545
Score = 28.4 bits (63), Expect = 8.4
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 145 VGG----VCDIDQLRDTPVSELVLHLGDHDLTQLNETSHVRRGVRRVLFHSHFHPFVLSN 200
+GG +++LR + LVLH GD L T V+ +FH F L N
Sbjct: 31 IGGFSAVNAKLNKLRKKYKNPLVLHAGDAITGTLYFTLFGGSADAAVMNAGNFHYFTLGN 90
>gnl|CDD|213859 TIGR03767, P_acnes_RR, metallophosphoesterase, PPA1498 family.
This model describes a small collection of probable
metallophosphoresterases, related to pfam00149 but with
long inserts separating some of the shared motifs such
that the homology is apparent only through multiple
sequence alignment. Members of this protein family, in
general, have a Sec-independent TAT (twin-arginine
translocation) signal sequence, N-terminal to the region
modeled by This model. Members include YP_056203.1 from
Propionibacterium acnes KPA171202.
Length = 496
Score = 28.3 bits (63), Expect = 9.4
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 23 YSEDNGSDDYDYYDEELPEQLKYLTLFEEKYGKGRGNGGSISDPFYKGSKDIMGDSSTT 81
YSEDN S YY ++ ++ +++ + + G+ GS+ +K KD + SS T
Sbjct: 282 YSEDNLSAGTGYYTFDIAGGVRGISM--DTTNRAGGDEGSLGQTQFKWIKDTLRASSDT 338
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.427
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,942,747
Number of extensions: 2168972
Number of successful extensions: 1714
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1703
Number of HSP's successfully gapped: 29
Length of query: 417
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 318
Effective length of database: 6,546,556
Effective search space: 2081804808
Effective search space used: 2081804808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)