Query psy15064
Match_columns 102
No_of_seqs 129 out of 1059
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 19:31:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 99.9 1.5E-26 3.1E-31 180.6 5.1 78 1-81 298-375 (375)
2 PTZ00466 actin-like protein; P 99.9 7.8E-26 1.7E-30 176.8 5.4 78 1-81 303-380 (380)
3 PTZ00281 actin; Provisional 99.9 1E-25 2.2E-30 175.5 5.2 78 1-81 299-376 (376)
4 KOG0676|consensus 99.9 2.4E-25 5.2E-30 174.4 4.2 78 1-81 295-372 (372)
5 PF00022 Actin: Actin; InterP 99.9 3.6E-25 7.8E-30 170.9 4.5 78 1-81 315-393 (393)
6 PTZ00004 actin-2; Provisional 99.9 4E-25 8.8E-30 172.1 4.7 78 1-81 301-378 (378)
7 PTZ00280 Actin-related protein 99.9 7.3E-24 1.6E-28 166.5 5.2 78 1-81 317-410 (414)
8 smart00268 ACTIN Actin. ACTIN 99.9 1E-23 2.2E-28 162.5 4.8 78 1-81 296-373 (373)
9 KOG0679|consensus 99.9 7.3E-24 1.6E-28 165.8 4.0 80 1-81 346-426 (426)
10 COG5277 Actin and related prot 99.9 4.2E-22 9.1E-27 159.2 5.2 78 1-81 367-444 (444)
11 cd00012 ACTIN Actin; An ubiqui 99.8 1.1E-21 2.4E-26 151.2 4.8 76 1-79 294-371 (371)
12 KOG0680|consensus 99.8 4.6E-20 1E-24 142.5 5.6 78 1-81 322-399 (400)
13 KOG0681|consensus 99.7 3.6E-17 7.8E-22 132.7 4.7 79 1-82 563-641 (645)
14 KOG0677|consensus 99.5 2.7E-15 5.9E-20 114.3 3.6 76 1-79 299-386 (389)
15 KOG0797|consensus 99.3 8.6E-13 1.9E-17 107.0 2.9 84 1-84 531-618 (618)
16 KOG0678|consensus 99.2 5.4E-12 1.2E-16 98.3 0.4 76 1-79 319-408 (415)
17 TIGR00904 mreB cell shape dete 96.9 0.00028 6.1E-09 54.0 0.2 43 1-54 284-326 (333)
18 PRK13927 rod shape-determining 96.8 0.00032 6.9E-09 53.5 -0.1 43 1-54 281-323 (334)
19 PRK13930 rod shape-determining 96.8 0.00039 8.4E-09 52.9 0.2 44 1-55 285-328 (335)
20 PRK13928 rod shape-determining 96.2 0.0015 3.2E-08 50.2 0.5 43 1-54 280-322 (336)
21 PRK13929 rod-share determining 96.0 0.0026 5.5E-08 49.1 0.8 42 1-53 283-324 (335)
22 PF06723 MreB_Mbl: MreB/Mbl pr 95.5 0.0066 1.4E-07 47.4 1.5 43 1-54 278-320 (326)
23 TIGR02529 EutJ ethanolamine ut 95.5 0.0062 1.3E-07 45.1 1.1 40 1-51 199-238 (239)
24 PRK15080 ethanolamine utilizat 95.2 0.0075 1.6E-07 45.3 1.0 41 1-52 226-266 (267)
25 CHL00094 dnaK heat shock prote 91.4 0.085 1.8E-06 44.1 1.0 44 1-55 333-376 (621)
26 PRK00290 dnaK molecular chaper 89.8 0.19 4.1E-06 42.0 1.8 43 1-54 331-373 (627)
27 PRK09472 ftsA cell division pr 89.7 0.24 5.2E-06 39.5 2.2 48 1-54 333-387 (420)
28 TIGR02350 prok_dnaK chaperone 89.5 0.17 3.7E-06 41.9 1.2 43 1-54 329-371 (595)
29 TIGR01174 ftsA cell division p 89.0 0.19 4.2E-06 39.0 1.2 22 1-22 319-340 (371)
30 PRK13411 molecular chaperone D 89.0 0.24 5.1E-06 41.8 1.7 44 1-54 332-375 (653)
31 PRK01433 hscA chaperone protei 87.8 0.22 4.7E-06 41.7 0.8 43 1-54 313-355 (595)
32 TIGR02261 benz_CoA_red_D benzo 87.2 0.31 6.6E-06 37.2 1.2 47 1-53 216-262 (262)
33 PTZ00186 heat shock 70 kDa pre 86.6 0.27 5.8E-06 41.7 0.7 43 1-54 358-400 (657)
34 PTZ00400 DnaK-type molecular c 86.6 0.49 1.1E-05 40.0 2.2 43 1-54 372-414 (663)
35 PTZ00009 heat shock 70 kDa pro 86.1 0.54 1.2E-05 39.7 2.2 44 1-54 337-380 (653)
36 TIGR01991 HscA Fe-S protein as 84.9 0.5 1.1E-05 39.4 1.5 43 1-54 317-359 (599)
37 PLN03184 chloroplast Hsp70; Pr 83.3 0.62 1.3E-05 39.5 1.4 43 1-54 370-412 (673)
38 PRK05183 hscA chaperone protei 83.2 0.47 1E-05 39.8 0.7 43 1-54 333-375 (616)
39 TIGR02259 benz_CoA_red_A benzo 81.8 0.88 1.9E-05 37.0 1.7 47 1-53 386-432 (432)
40 TIGR03286 methan_mark_15 putat 81.7 0.52 1.1E-05 38.1 0.4 43 1-54 360-402 (404)
41 PF11104 PilM_2: Type IV pilus 80.7 0.94 2E-05 34.8 1.5 21 1-21 279-299 (340)
42 PRK13410 molecular chaperone D 80.4 0.83 1.8E-05 38.8 1.1 43 1-54 333-375 (668)
43 TIGR00241 CoA_E_activ CoA-subs 80.1 0.88 1.9E-05 33.5 1.1 40 1-51 208-247 (248)
44 PF00012 HSP70: Hsp70 protein; 75.3 0.88 1.9E-05 37.1 -0.1 43 1-54 333-375 (602)
45 PRK11678 putative chaperone; P 74.8 1.2 2.7E-05 36.1 0.6 43 1-54 404-446 (450)
46 TIGR01175 pilM type IV pilus a 73.9 2 4.3E-05 32.7 1.5 21 1-21 287-307 (348)
47 TIGR03192 benz_CoA_bzdQ benzoy 69.4 1.9 4.2E-05 33.4 0.6 43 1-54 244-287 (293)
48 PF03727 Hexokinase_2: Hexokin 64.6 8.3 0.00018 28.5 3.1 43 7-55 197-240 (243)
49 COG1924 Activator of 2-hydroxy 64.3 3 6.5E-05 33.7 0.7 43 1-54 347-389 (396)
50 COG4820 EutJ Ethanolamine util 62.8 5.5 0.00012 30.1 1.8 21 1-21 231-251 (277)
51 PF01869 BcrAD_BadFG: BadF/Bad 60.6 0.57 1.2E-05 34.7 -3.7 47 1-53 225-271 (271)
52 PRK13317 pantothenate kinase; 52.8 11 0.00025 28.6 2.2 46 1-54 227-273 (277)
53 KOG0333|consensus 49.5 7.7 0.00017 33.0 0.8 14 89-102 574-587 (673)
54 PF09693 Phage_XkdX: Phage unc 49.0 9.3 0.0002 20.8 0.9 12 60-71 24-35 (40)
55 COG1077 MreB Actin-like ATPase 48.0 6.3 0.00014 31.3 0.1 42 1-53 288-329 (342)
56 PF12401 DUF3662: Protein of u 46.3 2.2 4.7E-05 28.5 -2.4 60 12-75 29-98 (116)
57 TIGR01669 phage_XkdX phage unc 46.2 11 0.00024 21.1 0.9 15 57-71 25-40 (45)
58 COG0849 ftsA Cell division ATP 39.9 13 0.00028 30.2 0.7 49 1-55 325-380 (418)
59 PF14824 Sirohm_synth_M: Siroh 36.5 20 0.00042 18.6 0.8 19 3-23 11-29 (30)
60 PLN02596 hexokinase-like 35.2 46 0.001 27.6 3.2 43 8-56 440-484 (490)
61 PTZ00107 hexokinase; Provision 34.7 45 0.00098 27.4 3.1 43 7-55 416-459 (464)
62 PLN02914 hexokinase 29.6 59 0.0013 27.0 3.0 43 7-55 442-486 (490)
63 PRK05082 N-acetylmannosamine k 29.4 46 0.001 24.6 2.2 48 2-53 239-286 (291)
64 KOG0100|consensus 28.4 39 0.00084 28.3 1.7 21 1-21 367-387 (663)
65 PLN02362 hexokinase 27.4 68 0.0015 26.8 3.0 43 7-55 453-497 (509)
66 KOG1369|consensus 26.5 76 0.0017 26.4 3.1 43 8-56 425-467 (474)
67 PLN02405 hexokinase 26.5 68 0.0015 26.7 2.9 43 7-55 444-488 (497)
68 KOG3445|consensus 25.5 72 0.0016 22.4 2.4 29 4-34 34-62 (145)
69 PF08260 Kinin: Insect kinin p 22.7 36 0.00079 12.5 0.3 6 41-46 2-7 (8)
70 PRK13310 N-acetyl-D-glucosamin 22.7 67 0.0015 23.9 2.0 49 2-53 251-300 (303)
71 TIGR02542 B_forsyth_147 Bacter 21.8 46 0.001 22.9 0.9 39 61-99 102-141 (145)
72 PF05295 Luciferase_N: Lucifer 21.4 32 0.0007 21.8 0.1 19 52-71 29-47 (82)
73 KOG0331|consensus 20.6 47 0.001 27.9 0.8 14 88-101 397-410 (519)
74 PF12065 DUF3545: Protein of u 20.4 72 0.0016 19.1 1.4 12 13-24 36-47 (59)
75 smart00340 HALZ homeobox assoc 20.2 78 0.0017 17.8 1.4 12 13-24 21-32 (44)
No 1
>PTZ00452 actin; Provisional
Probab=99.93 E-value=1.5e-26 Score=180.56 Aligned_cols=78 Identities=38% Similarity=0.761 Sum_probs=75.0
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC 80 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~ 80 (102)
||+||+|+||||.+||++||++++|...+++|.+ ++++++++|+|||++|++++|+++||||+||+|+|++++++||
T Consensus 298 vL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~---~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~ 374 (375)
T PTZ00452 298 VLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAA---PPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKC 374 (375)
T ss_pred EEecccccccCHHHHHHHHHHHhCCCCceeEEec---CCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeec
Confidence 6899999999999999999999999988999998 7799999999999999999999999999999999999999998
Q ss_pred c
Q psy15064 81 P 81 (102)
Q Consensus 81 ~ 81 (102)
+
T Consensus 375 ~ 375 (375)
T PTZ00452 375 F 375 (375)
T ss_pred C
Confidence 5
No 2
>PTZ00466 actin-like protein; Provisional
Probab=99.92 E-value=7.8e-26 Score=176.83 Aligned_cols=78 Identities=36% Similarity=0.681 Sum_probs=74.9
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC 80 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~ 80 (102)
||+||+|+||||.+||++||+++.|..++++|.. ++++++++|+|||++|+++.|++.||||+||+|+|+++++|||
T Consensus 303 vL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~---~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~ 379 (380)
T PTZ00466 303 VLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISA---PPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKT 379 (380)
T ss_pred EEeCCccccCCHHHHHHHHHHHhCCCCceEEEec---CCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeec
Confidence 6899999999999999999999999989999998 7899999999999999999999999999999999999999998
Q ss_pred c
Q psy15064 81 P 81 (102)
Q Consensus 81 ~ 81 (102)
+
T Consensus 380 ~ 380 (380)
T PTZ00466 380 F 380 (380)
T ss_pred C
Confidence 5
No 3
>PTZ00281 actin; Provisional
Probab=99.92 E-value=1e-25 Score=175.45 Aligned_cols=78 Identities=47% Similarity=0.925 Sum_probs=74.9
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC 80 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~ 80 (102)
||+||+|+||||.+||++||+++.|...+++|+. +++|++++|+|||++|+++.|++.||||+||+|+|+++++|||
T Consensus 299 vl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~---~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~ 375 (376)
T PTZ00281 299 VLSGGTTMFPGIADRMNKELTALAPSTMKIKIIA---PPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKC 375 (376)
T ss_pred cccCccccCcCHHHHHHHHHHHhCCCCcceEEec---CCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeec
Confidence 6899999999999999999999999989999998 6789999999999999999999999999999999999999998
Q ss_pred c
Q psy15064 81 P 81 (102)
Q Consensus 81 ~ 81 (102)
+
T Consensus 376 ~ 376 (376)
T PTZ00281 376 F 376 (376)
T ss_pred C
Confidence 5
No 4
>KOG0676|consensus
Probab=99.91 E-value=2.4e-25 Score=174.35 Aligned_cols=78 Identities=45% Similarity=0.900 Sum_probs=75.7
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC 80 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~ 80 (102)
||+||+|++|||.+||++||+.++|..++++|++ ++++.+++|+||||+|++++|+++||||+||+|+|+++++|||
T Consensus 295 vLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~---pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~ 371 (372)
T KOG0676|consen 295 VLSGGTTMFPGLADRLQKELQALAPSTIKIKVIA---PPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKC 371 (372)
T ss_pred EEeCCcccchhHHHHHHHHHhhcCCCCcceEEec---CcccccceecCceeEeecchHhhccccHHHHhhhCCceeeecc
Confidence 6999999999999999999999999999999999 7888899999999999999999999999999999999999999
Q ss_pred c
Q psy15064 81 P 81 (102)
Q Consensus 81 ~ 81 (102)
|
T Consensus 372 f 372 (372)
T KOG0676|consen 372 F 372 (372)
T ss_pred C
Confidence 6
No 5
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.91 E-value=3.6e-25 Score=170.94 Aligned_cols=78 Identities=46% Similarity=0.880 Sum_probs=73.0
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCC-CcccceeehhhhhccccccccccccHHHHhhcCchhhhhh
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSA-ERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRK 79 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~-~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk 79 (102)
+|+||+|+||||.+||++||+.+.|...+++|+. ++ +|.+++|+|||++|+++.|+++||||+||+|+|+++++||
T Consensus 315 vl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~---~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rk 391 (393)
T PF00022_consen 315 VLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIA---PPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRK 391 (393)
T ss_dssp EEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE-----T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHH
T ss_pred EEecccccccchHHHHHHHhhhhhhccccceecc---CchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeec
Confidence 5899999999999999999999999999999999 55 8999999999999999999999999999999999999999
Q ss_pred cc
Q psy15064 80 CP 81 (102)
Q Consensus 80 ~~ 81 (102)
|+
T Consensus 392 c~ 393 (393)
T PF00022_consen 392 CF 393 (393)
T ss_dssp T-
T ss_pred CC
Confidence 96
No 6
>PTZ00004 actin-2; Provisional
Probab=99.91 E-value=4e-25 Score=172.09 Aligned_cols=78 Identities=45% Similarity=0.920 Sum_probs=74.8
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC 80 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~ 80 (102)
||+||+|+||||.+||++||++++|...+++|.. ++++.+++|+|||++|++++|++.||||+||+|+|+++++|||
T Consensus 301 vl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~---~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~ 377 (378)
T PTZ00004 301 VLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVA---PPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKC 377 (378)
T ss_pred EeccchhcCcCHHHHHHHHHHHhCCCCccEEEec---CCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeec
Confidence 6899999999999999999999999988999998 7789999999999999999999999999999999999999998
Q ss_pred c
Q psy15064 81 P 81 (102)
Q Consensus 81 ~ 81 (102)
+
T Consensus 378 ~ 378 (378)
T PTZ00004 378 F 378 (378)
T ss_pred C
Confidence 5
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.89 E-value=7.3e-24 Score=166.54 Aligned_cols=78 Identities=29% Similarity=0.595 Sum_probs=71.0
Q ss_pred CeeccCCCCCChHHHHHHHHhhhC----------------CCCccEEEEecCCCCCcccceeehhhhhcccccccccccc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRI----------------PASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWIS 64 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~----------------p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~It 64 (102)
||+||+|+||||.+||++||++++ |..++++|++ ++++.+++|+|||++|++++|+++|||
T Consensus 317 vL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~~~~~~~~W~GgSilas~~~f~~~~it 393 (414)
T PTZ00280 317 VLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVS---HPRQRYAVWYGGSMLASSPEFEKVCHT 393 (414)
T ss_pred EEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEec---CCccceeEEEChhhcccCcchhhheEE
Confidence 689999999999999999999986 4466888888 667899999999999999999999999
Q ss_pred HHHHhhcCchhhhhhcc
Q psy15064 65 SQEYEEGGKGQVDRKCP 81 (102)
Q Consensus 65 k~eY~E~G~~i~~rk~~ 81 (102)
|+||+|+|+++++++..
T Consensus 394 k~eY~E~G~~i~~~~~~ 410 (414)
T PTZ00280 394 KAEYDEYGPSICRYNNV 410 (414)
T ss_pred HHHHhccChHheeeccc
Confidence 99999999999988743
No 8
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.89 E-value=1e-23 Score=162.54 Aligned_cols=78 Identities=45% Similarity=0.885 Sum_probs=74.4
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC 80 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~ 80 (102)
+|+||+|++|||.+||++||+++.|..+++++.. ++++.+++|+|||++|+++.|++.||||+||+|+|++++++||
T Consensus 296 vltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~---~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~ 372 (373)
T smart00268 296 VLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIA---PPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKC 372 (373)
T ss_pred EeecccccCcCHHHHHHHHHHHhCCCCceeEEec---CCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeec
Confidence 6899999999999999999999999888899987 6788999999999999999999999999999999999999998
Q ss_pred c
Q psy15064 81 P 81 (102)
Q Consensus 81 ~ 81 (102)
+
T Consensus 373 ~ 373 (373)
T smart00268 373 F 373 (373)
T ss_pred C
Confidence 5
No 9
>KOG0679|consensus
Probab=99.89 E-value=7.3e-24 Score=165.77 Aligned_cols=80 Identities=58% Similarity=1.052 Sum_probs=76.0
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCc-hhhhhh
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGK-GQVDRK 79 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~-~i~~rk 79 (102)
||+||+|+|+||.+||++||..+.|.. +++++++.+..+++|++|+||||||++++|+++||+|+||+|.|. ..+.+|
T Consensus 346 ivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~r 424 (426)
T KOG0679|consen 346 IVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERR 424 (426)
T ss_pred EEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhc
Confidence 689999999999999999999999987 999999888999999999999999999999999999999999999 778888
Q ss_pred cc
Q psy15064 80 CP 81 (102)
Q Consensus 80 ~~ 81 (102)
|.
T Consensus 425 c~ 426 (426)
T KOG0679|consen 425 CP 426 (426)
T ss_pred CC
Confidence 84
No 10
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.85 E-value=4.2e-22 Score=159.17 Aligned_cols=78 Identities=38% Similarity=0.726 Sum_probs=75.0
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC 80 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~ 80 (102)
||+||+|++|||.+||++||+.+.|..+.+.|.. +++|.+.+|+|||++|+++.|+.+||||+||+|+|+++++++|
T Consensus 367 vitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~---~~~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~ 443 (444)
T COG5277 367 VLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIP---PPDPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKR 443 (444)
T ss_pred EEecCccCCCCHHHHHHHHHHhhcCCCCceeeec---CCchhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhcc
Confidence 6899999999999999999999999999999999 7899999999999999999999999999999999999999987
Q ss_pred c
Q psy15064 81 P 81 (102)
Q Consensus 81 ~ 81 (102)
+
T Consensus 444 ~ 444 (444)
T COG5277 444 F 444 (444)
T ss_pred C
Confidence 4
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.84 E-value=1.1e-21 Score=151.25 Aligned_cols=76 Identities=46% Similarity=0.849 Sum_probs=70.3
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCC--CccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhh
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPA--SMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDR 78 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~--~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~r 78 (102)
+|+||+|++|||.+||++||..+.|. ...+++.. ..+|.+++|+|||++|+++.|++.||||+||+|+|+++++|
T Consensus 294 vl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~---~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~ 370 (371)
T cd00012 294 VLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIA---PPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHR 370 (371)
T ss_pred EEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEcc---CCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEec
Confidence 58999999999999999999999987 55677776 78899999999999999999999999999999999999987
Q ss_pred h
Q psy15064 79 K 79 (102)
Q Consensus 79 k 79 (102)
|
T Consensus 371 k 371 (371)
T cd00012 371 K 371 (371)
T ss_pred C
Confidence 5
No 12
>KOG0680|consensus
Probab=99.80 E-value=4.6e-20 Score=142.52 Aligned_cols=78 Identities=28% Similarity=0.470 Sum_probs=74.4
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC 80 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~ 80 (102)
|++||+++||||.+||.+||+.++|..+.++|.. |.||...+|.||+-++..+.|...||||+||+|+|++++.+|.
T Consensus 322 v~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~---p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~~~~~~~ 398 (400)
T KOG0680|consen 322 VCIGGNSNFPGFRQRLARELRSLLPADWEVSVSV---PEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGPSWCTKKR 398 (400)
T ss_pred EEecCccCCcchHHHHHHHHHhhCCccceEEEec---CCCcceeeehhccccccCcchhcceecHhhHhhcCchhhhhhc
Confidence 5899999999999999999999999999999999 8999999999999999999999999999999999999988775
Q ss_pred c
Q psy15064 81 P 81 (102)
Q Consensus 81 ~ 81 (102)
+
T Consensus 399 ~ 399 (400)
T KOG0680|consen 399 F 399 (400)
T ss_pred c
Confidence 4
No 13
>KOG0681|consensus
Probab=99.67 E-value=3.6e-17 Score=132.72 Aligned_cols=79 Identities=24% Similarity=0.480 Sum_probs=75.6
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhhhhhc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQVDRKC 80 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~~rk~ 80 (102)
+||||++++||+++||++||+.+.|....|+|+. .+||..+||.||+.+|..++|...++||+||+|+|+.+++..|
T Consensus 563 llTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~r---asdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~ 639 (645)
T KOG0681|consen 563 LLTGGCSQLPGMKERIKKELTSMRPVGSSINVVR---ASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHV 639 (645)
T ss_pred EeecccccCcCHHHHHHHHhheecccCCceEEEe---cCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHh
Confidence 4899999999999999999999999999999998 8999999999999999999999999999999999999999987
Q ss_pred cc
Q psy15064 81 PR 82 (102)
Q Consensus 81 ~~ 82 (102)
..
T Consensus 640 ~~ 641 (645)
T KOG0681|consen 640 AS 641 (645)
T ss_pred hc
Confidence 64
No 14
>KOG0677|consensus
Probab=99.55 E-value=2.7e-15 Score=114.28 Aligned_cols=76 Identities=26% Similarity=0.569 Sum_probs=65.5
Q ss_pred CeeccCCCCCChHHHHHHHHhhhC-----C------CCccEEEEecCCCCCcccceeehhhhhccc-cccccccccHHHH
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRI-----P------ASMKLKLISANGSAERRFGAWIGGSILASI-GTFQQMWISSQEY 68 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~-----p------~~~~i~v~~~~~~~~~~~~aW~Ggsila~~-~~~~~~~Itk~eY 68 (102)
||+||+||+||+..||++||+++. . ..+++++.. |+.+...+++||+++|.. .+-+++|++|+||
T Consensus 299 VLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEd---PPrRKhMVflGGAVLA~imkD~d~fW~skqey 375 (389)
T KOG0677|consen 299 VLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIED---PPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEY 375 (389)
T ss_pred eecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccC---CCccceeEEEchHHHHHHhcCCccceecHHHH
Confidence 689999999999999999999873 1 124677777 788999999999999985 6667999999999
Q ss_pred hhcCchhhhhh
Q psy15064 69 EEGGKGQVDRK 79 (102)
Q Consensus 69 ~E~G~~i~~rk 79 (102)
+|.|.+.+.+.
T Consensus 376 qE~G~~~l~k~ 386 (389)
T KOG0677|consen 376 QEEGINVLNKL 386 (389)
T ss_pred HhhhHHHHHhh
Confidence 99999988764
No 15
>KOG0797|consensus
Probab=99.31 E-value=8.6e-13 Score=106.97 Aligned_cols=84 Identities=21% Similarity=0.418 Sum_probs=75.7
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCC----ccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchhh
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPAS----MKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQV 76 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~----~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i~ 76 (102)
.++||..++|||.+-|++.+....|+. ..|.|+.+|+..||++-+|+||||++.+...++.||+..||+-+|.+++
T Consensus 531 l~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL 610 (618)
T KOG0797|consen 531 LLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVL 610 (618)
T ss_pred HhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhh
Confidence 378999999999999999999888762 2588888888899999999999999999999999999999999999999
Q ss_pred hhhccccc
Q psy15064 77 DRKCPRAF 84 (102)
Q Consensus 77 ~rk~~~~~ 84 (102)
+.||.+.|
T Consensus 611 ~~k~~f~w 618 (618)
T KOG0797|consen 611 QYKKYFSW 618 (618)
T ss_pred hhcccccC
Confidence 99988543
No 16
>KOG0678|consensus
Probab=99.16 E-value=5.4e-12 Score=98.28 Aligned_cols=76 Identities=28% Similarity=0.458 Sum_probs=66.2
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCC--------------CCccEEEEecCCCCCcccceeehhhhhccccccccccccHH
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIP--------------ASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQ 66 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p--------------~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~ 66 (102)
+++||+++|++|..|++++++.++. ....++++. ..-.++++|.||+++++.+.|-..+-||+
T Consensus 319 vlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvis---h~~qr~avwfggs~lastpef~~~~~tk~ 395 (415)
T KOG0678|consen 319 VLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLS---HLLQRTAVWFGGSKLASTPEFVPACHTKE 395 (415)
T ss_pred hhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhh---hhhhhcceeccCccccCCcccccccCcch
Confidence 5799999999999999999987742 234577777 67789999999999999999999999999
Q ss_pred HHhhcCchhhhhh
Q psy15064 67 EYEEGGKGQVDRK 79 (102)
Q Consensus 67 eY~E~G~~i~~rk 79 (102)
+|+|+|+++++..
T Consensus 396 ~yee~g~si~r~~ 408 (415)
T KOG0678|consen 396 DYEEYGPSICRTN 408 (415)
T ss_pred hhhhhChhhhhcC
Confidence 9999999998763
No 17
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=96.86 E-value=0.00028 Score=54.01 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=33.1
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
||+||+|+||||.+||++++.. .|.. ..+|..++=.|++++..
T Consensus 284 vL~GGss~ipgl~e~l~~~~~~--------~v~~---~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 284 VLTGGGALLRNLDKLLSKETGL--------PVIV---ADDPLLCVAKGTGKALE 326 (333)
T ss_pred EEECcccchhhHHHHHHHHHCC--------Ccee---cCChHHHHHHHHHHHHh
Confidence 6899999999999999999842 1233 45677777788888764
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=96.77 E-value=0.00032 Score=53.52 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=32.9
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+|+||+|++|||.+||++++. .++.+ ..+|..++=.|+++++.
T Consensus 281 vL~GG~s~ipgl~~~l~~~~~------~~v~~-----~~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 281 VLTGGGALLRGLDKLLSEETG------LPVHV-----AEDPLTCVARGTGKALE 323 (334)
T ss_pred EEECchhhhhHHHHHHHHHHC------CCcEe-----cCCHHHHHHHHHHHHHh
Confidence 589999999999999999984 22333 34567777788888764
No 19
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=96.75 E-value=0.00039 Score=52.92 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=32.8
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASI 55 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~ 55 (102)
+|+||+|++|||.+||++++.. ++. . ..+|..+.=.|+++++..
T Consensus 285 vL~GG~s~ipg~~~~l~~~~~~------~v~--~---~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 285 VLTGGGALLRGLDKLLSEETGL------PVH--I---AEDPLTCVARGTGKALEN 328 (335)
T ss_pred EEECchhcchhHHHHHHHHHCC------Cce--e---cCCHHHHHHHHHHHHHhC
Confidence 5899999999999999999851 222 2 345666666788888753
No 20
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=96.20 E-value=0.0015 Score=50.17 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=33.8
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+|+||+|++||+.++|++++.. .+. . ..+|..++=+|+++++.
T Consensus 280 vL~GG~s~ipgi~e~l~~~~~~------~v~--~---~~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 280 IMTGGGALLHGLDKLLAEETKV------PVY--I---AEDPISCVALGTGKMLE 322 (336)
T ss_pred EEECcccchhhHHHHHHHHHCC------Cce--e---cCCHHHHHHHHHHHHHh
Confidence 5899999999999999999852 222 2 34677888889998864
No 21
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=95.99 E-value=0.0026 Score=49.08 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=31.3
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILA 53 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila 53 (102)
||+||+|+||||.+||++|+.. .+.+ ..+|..++=+|++..-
T Consensus 283 vLtGG~s~lpgl~e~l~~~~~~------~v~~-----~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 283 ILTGGGALLNGIKEWLSEEIVV------PVHV-----AANPLESVAIGTGRSL 324 (335)
T ss_pred EEEchhhhhhhHHHHHHHHHCC------Ccee-----CCCHHHHHHHHHHHHH
Confidence 6899999999999999999952 2222 3456667777777653
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=95.51 E-value=0.0066 Score=47.36 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=33.8
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+||||+++++||.++|++|+. +.|.. ..+|.+++=.|+..+.+
T Consensus 278 ~LtGGga~l~Gl~~~i~~~~~--------~pV~v---a~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 278 VLTGGGALLRGLDEYISEETG--------VPVRV---ADDPLTAVARGAGKLLE 320 (326)
T ss_dssp EEESGGGGSBTHHHHHHHHHS--------S-EEE----SSTTTHHHHHHHHTTC
T ss_pred EEEChhhhhccHHHHHHHHHC--------CCEEE---cCCHHHHHHHHHHHHHh
Confidence 589999999999999999993 44554 56788888888877654
No 23
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=95.47 E-value=0.0062 Score=45.12 Aligned_cols=40 Identities=18% Similarity=0.392 Sum_probs=29.4
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhh
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSI 51 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsi 51 (102)
+|+||++++||+.+.|++++.. | |.. +.+|.++.=+|+++
T Consensus 199 ~LtGG~a~ipgl~e~l~~~lg~--~------v~~---~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 199 YLVGGACSFSGFADVFEKQLGL--N------VIK---PQHPLYVTPLGIAM 238 (239)
T ss_pred EEECchhcchhHHHHHHHHhCC--C------ccc---CCCCCeehhheeec
Confidence 5899999999999999988842 2 122 45677776666653
No 24
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=95.24 E-value=0.0075 Score=45.31 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=30.9
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhh
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSIL 52 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsil 52 (102)
+|+||+|++||+.+.+++.+.. | +. . +.+|.+++=+|++++
T Consensus 226 vLtGG~s~lpgl~e~l~~~lg~--~----v~--~---~~~P~~~~a~Gaa~~ 266 (267)
T PRK15080 226 YLVGGTCCLPGFEEVFEKQTGL--P----VH--K---PQHPLFVTPLGIALS 266 (267)
T ss_pred EEECCcccchhHHHHHHHHhCC--C----cc--c---CCCchHHHHHHHHhh
Confidence 5899999999999999988842 2 12 2 456777777777765
No 25
>CHL00094 dnaK heat shock protein 70
Probab=91.35 E-value=0.085 Score=44.06 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=32.5
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhccc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASI 55 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~ 55 (102)
+|+||+|++|.+.+.|.+.+... +.. ..+|..++-+||++.|..
T Consensus 333 iLvGGssriP~v~~~l~~~fg~~--------~~~---~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 333 VLVGGSTRIPAIQELVKKLLGKK--------PNQ---SVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred EEECCccCChHHHHHHHHHhCCC--------cCc---CCCchhHHHhhhHHHHHH
Confidence 58999999999999999776421 112 345667778899988753
No 26
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=89.81 E-value=0.19 Score=41.95 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=31.7
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+|+||+|.+|.+.++|++.+... +.. ..+|..++-.||++.|.
T Consensus 331 iLvGGssriP~v~~~l~~~fg~~--------~~~---~~npdeava~GAa~~aa 373 (627)
T PRK00290 331 ILVGGSTRMPAVQELVKEFFGKE--------PNK---GVNPDEVVAIGAAIQGG 373 (627)
T ss_pred EEECCcCCChHHHHHHHHHhCCC--------CCc---CcCChHHHHHhHHHHHH
Confidence 58999999999999998776321 112 34566777888888875
No 27
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=89.75 E-value=0.24 Score=39.47 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=33.7
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCC-------CCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANG-------SAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~-------~~~~~~~aW~Ggsila~ 54 (102)
|||||++++||+.+.+++-+.. .+++..|.. ..+|.|++=.|...++.
T Consensus 333 vLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 333 VLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred EEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCChhhcCCcHHHHHHHHHHHhh
Confidence 6899999999999999977752 233332211 24678888788877765
No 28
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=89.48 E-value=0.17 Score=41.85 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=31.8
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+|+||+|++|.+.+.|.+.+.. .+.. ..+|..++-.||++.|.
T Consensus 329 ~LvGGssriP~v~~~i~~~f~~--------~~~~---~~~pdeava~GAa~~aa 371 (595)
T TIGR02350 329 ILVGGSTRIPAVQELVKDFFGK--------EPNK---SVNPDEVVAIGAAIQGG 371 (595)
T ss_pred EEECCcccChHHHHHHHHHhCC--------cccC---CcCcHHHHHHHHHHHHH
Confidence 5899999999999999876642 1122 34566677888888875
No 29
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=89.02 E-value=0.19 Score=38.99 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.5
Q ss_pred CeeccCCCCCChHHHHHHHHhh
Q psy15064 1 MILGTALRLMGFPERLNRDLSV 22 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~ 22 (102)
+|+||+|++||+.+.+.+.+..
T Consensus 319 vLtGG~S~ipgi~~~l~~~~~~ 340 (371)
T TIGR01174 319 VLTGGGAQLEGIVELAEKVFDN 340 (371)
T ss_pred EEeChHHcccCHHHHHHHHhCC
Confidence 5899999999999999988744
No 30
>PRK13411 molecular chaperone DnaK; Provisional
Probab=88.96 E-value=0.24 Score=41.80 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=29.5
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+|+||+|++|.+++.|++.+.... +.. ..+|..++=.||++.|.
T Consensus 332 iLvGGssriP~v~~~l~~~f~~~~-------~~~---~~npdeaVA~GAAi~aa 375 (653)
T PRK13411 332 ILVGGSTRIPAVQEAIQKFFGGKQ-------PDR---SVNPDEAVALGAAIQAG 375 (653)
T ss_pred EEECCCCCcchHHHHHHHHcCCcC-------cCC---CCCchHHHHHHHHHHHH
Confidence 589999999999999987664211 111 23445555567777764
No 31
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=87.78 E-value=0.22 Score=41.72 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=30.5
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+|+||+|++|.+.+.|.+.+.. .+.. ..+|..++=.||++.|.
T Consensus 313 iLvGGssriP~v~~~l~~~f~~--------~~~~---~~npdeaVA~GAAi~a~ 355 (595)
T PRK01433 313 ILVGGATRIPLIKDELYKAFKV--------DILS---DIDPDKAVVWGAALQAE 355 (595)
T ss_pred EEECCcccChhHHHHHHHHhCC--------Ccee---cCCchHHHHHHHHHHHH
Confidence 5899999999999999876632 1222 34556666678887765
No 32
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=87.17 E-value=0.31 Score=37.18 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=35.4
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILA 53 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila 53 (102)
+++||.+.-+++.+.|+++|... ...+.+.. ++++++..=+||++++
T Consensus 216 ~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~---~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 216 LCTGGLALDAGLLEALKDAIQEA---KMAVAAEN---HPDAIYAGAIGAALWG 262 (262)
T ss_pred EEECcccccHHHHHHHHHHhccC---CcceEecC---CCcchHHHHHHHHHcC
Confidence 57999999999999999998542 13344544 6678888778888764
No 33
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=86.64 E-value=0.27 Score=41.68 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=29.7
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+|+||+|++|.+.+.|.+.+... | .. ..+|..++=+||++.|.
T Consensus 358 vLVGGssriP~V~~~l~~~fg~~-~-------~~---~~nPdeaVA~GAAi~a~ 400 (657)
T PTZ00186 358 VLVGGMTRMPKVVEEVKKFFQKD-P-------FR---GVNPDEAVALGAATLGG 400 (657)
T ss_pred EEECCcccChHHHHHHHHHhCCC-c-------cc---cCCCchHHHHhHHHHHH
Confidence 58999999999999999776431 1 11 23445555667777764
No 34
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=86.64 E-value=0.49 Score=40.03 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=29.7
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+|+||+|.+|.+++.|.+.+.... .. ..+|..++=.||++.+.
T Consensus 372 iLvGGssriP~v~~~l~~~f~~~~--------~~---~~npdeaVA~GAAi~aa 414 (663)
T PTZ00400 372 ILVGGMTRMPKVSETVKKIFGKEP--------SK---GVNPDEAVAMGAAIQAG 414 (663)
T ss_pred EEECCccCChHHHHHHHHHhCCCc--------cc---CCCCccceeeccHHHHH
Confidence 589999999999999987764211 11 33455556667777764
No 35
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=86.14 E-value=0.54 Score=39.65 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=28.8
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+|+||+|++|.+++.|.+.+....+ .. ..+|..++=.||++.|.
T Consensus 337 iLvGGssriP~v~~~i~~~f~~~~~-------~~---~~npdeaVA~GAa~~aa 380 (653)
T PTZ00009 337 VLVGGSTRIPKVQSLIKDFFNGKEP-------CK---SINPDEAVAYGAAVQAA 380 (653)
T ss_pred EEECCCCCChhHHHHHHHHhCCCCC-------CC---CCCcchHHhhhhhhhHH
Confidence 5899999999999999876642111 11 23444555567777654
No 36
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=84.88 E-value=0.5 Score=39.42 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=30.2
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+|+||+|++|.+.+.|.+.+... + .. ..+|..++=.||++.|.
T Consensus 317 iLvGGssriP~V~~~l~~~f~~~-~-------~~---~~npdeaVA~GAai~a~ 359 (599)
T TIGR01991 317 VLVGGSTRMPLVRRAVAELFGQE-P-------LT---DIDPDQVVALGAAIQAD 359 (599)
T ss_pred EEECCcCCChHHHHHHHHHhCCC-C-------CC---CCCCcHHHHHHHHHHHH
Confidence 58999999999999999766431 1 11 33455566678887764
No 37
>PLN03184 chloroplast Hsp70; Provisional
Probab=83.33 E-value=0.62 Score=39.53 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=28.8
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+|+||+|++|.+.++|.+.+... +. . ..+|..++=+||++.|.
T Consensus 370 iLvGGssriP~V~~~i~~~fg~~------~~--~---~~npdeaVA~GAAi~aa 412 (673)
T PLN03184 370 ILVGGSTRIPAVQELVKKLTGKD------PN--V---TVNPDEVVALGAAVQAG 412 (673)
T ss_pred EEECCccccHHHHHHHHHHhCCC------cc--c---ccCcchHHHHHHHHHHH
Confidence 58999999999999998776321 11 1 22344455567777664
No 38
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=83.22 E-value=0.47 Score=39.76 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=30.0
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+|+||+|.+|.+.+.|.+.+... + .. ..+|..++=.||++.|.
T Consensus 333 iLvGGssriP~v~~~l~~~fg~~-~-------~~---~~npdeaVA~GAAi~a~ 375 (616)
T PRK05183 333 VMVGGSTRVPLVREAVGEFFGRT-P-------LT---SIDPDKVVAIGAAIQAD 375 (616)
T ss_pred EEECCcccChHHHHHHHHHhccC-c-------Cc---CCCchHHHHHHHHHHHH
Confidence 58999999999999998766431 1 11 33455556678887765
No 39
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=81.79 E-value=0.88 Score=37.03 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=36.9
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILA 53 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila 53 (102)
+++||.+.-++|.+.|+++|....+ ..+|+. |+++++..=+|+++++
T Consensus 386 vftGGvA~N~gvv~aLe~~L~~~~~---~~~V~V---p~~pq~~GALGAAL~a 432 (432)
T TIGR02259 386 TFTGGVAKNEAAVKELRKLIKENYG---EVQINI---DPDSIYTGALGASEFA 432 (432)
T ss_pred EEECCccccHHHHHHHHHHHccccC---CCeEec---CCCccHHHHHHHHHhC
Confidence 4799999999999999998865432 345666 6788988888888764
No 40
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=81.72 E-value=0.52 Score=38.08 Aligned_cols=43 Identities=19% Similarity=0.379 Sum_probs=35.8
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+++||.+..+|+.+.|+++|. .+++. |+++++..=+||+++++
T Consensus 360 vftGGva~N~gvv~ale~~Lg--------~~iiv---Pe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 360 ILVGGTSLIEGLVKALGDLLG--------IEVVV---PEYSQYIGAVGAALLAS 402 (404)
T ss_pred EEECChhhhHHHHHHHHHHhC--------CcEEE---CCcccHHHHHHHHHHhc
Confidence 579999999999999998873 35666 67889998899999874
No 41
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=80.72 E-value=0.94 Score=34.84 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=19.3
Q ss_pred CeeccCCCCCChHHHHHHHHh
Q psy15064 1 MILGTALRLMGFPERLNRDLS 21 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~ 21 (102)
+||||++.++|+.+-|.++|.
T Consensus 279 ~L~Ggga~l~gL~~~l~~~l~ 299 (340)
T PF11104_consen 279 YLSGGGARLPGLAEYLSEELG 299 (340)
T ss_dssp EEESGGGGSTTHHHHHHHHHT
T ss_pred EEECCccchhhHHHHHHHHHC
Confidence 589999999999999999884
No 42
>PRK13410 molecular chaperone DnaK; Provisional
Probab=80.37 E-value=0.83 Score=38.80 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=28.5
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+|+||+|++|.+.+.|.+.+... + .. ..+|..++=+||++.|.
T Consensus 333 vLVGGssRiP~V~~~l~~~fg~~-~-------~~---~~npdeaVA~GAAi~aa 375 (668)
T PRK13410 333 VLVGGSTRMPMVQQLVRTLIPRE-P-------NQ---NVNPDEVVAVGAAIQAG 375 (668)
T ss_pred EEECCccccHHHHHHHHHHcCCC-c-------cc---CCCCchHHHHhHHHHHH
Confidence 58999999999999998655321 1 11 23344455567777664
No 43
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=80.10 E-value=0.88 Score=33.54 Aligned_cols=40 Identities=20% Similarity=0.417 Sum_probs=29.6
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhh
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSI 51 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsi 51 (102)
+++||.+..+++.+.|.+.+. ..+.. ++++.+..=+|+++
T Consensus 208 vl~GGva~n~~l~~~l~~~lg--------~~v~~---~~~~~~~~AlGaAl 247 (248)
T TIGR00241 208 VFTGGVSKNKGLVKALEKKLG--------MKVIT---PPEPQIVGAVGAAL 247 (248)
T ss_pred EEECccccCHHHHHHHHHHhC--------CcEEc---CCCccHHHHHHHHh
Confidence 589999999999999998872 34454 55666666667665
No 44
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=75.35 E-value=0.88 Score=37.11 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=30.5
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+|+||+|.+|-+.+.|.+.+.. .+.. ..+|..++=.||+++|.
T Consensus 333 ~lvGG~sr~p~v~~~l~~~f~~--------~~~~---~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 333 LLVGGSSRIPYVQEALKELFGK--------KISK---SVNPDEAVARGAALYAA 375 (602)
T ss_dssp EEESGGGGSHHHHHHHHHHTTS--------EEB----SS-TTTHHHHHHHHHHH
T ss_pred EEecCcccchhhhhhhhhcccc--------cccc---ccccccccccccccchh
Confidence 5899999999999999876541 2222 34566667789988875
No 45
>PRK11678 putative chaperone; Provisional
Probab=74.77 E-value=1.2 Score=36.08 Aligned_cols=43 Identities=14% Similarity=0.089 Sum_probs=28.2
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+|+||+|.+|++.+.|++.+-. ..+.. .++-.++=.|.++++.
T Consensus 404 vLvGGsSriP~V~~~l~~~fg~-------~~v~~----g~~~~sVa~Gla~~a~ 446 (450)
T PRK11678 404 YLTGGSARSPLIRAALAQQLPG-------IPIVG----GDDFGSVTAGLARWAQ 446 (450)
T ss_pred EEcCcccchHHHHHHHHHHCCC-------CcEEe----CCCcchHHHHHHHHHH
Confidence 5899999999999998876532 11222 2344445567777664
No 46
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=73.91 E-value=2 Score=32.75 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=19.4
Q ss_pred CeeccCCCCCChHHHHHHHHh
Q psy15064 1 MILGTALRLMGFPERLNRDLS 21 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~ 21 (102)
+|+||.+.++||.+-|++++.
T Consensus 287 ~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 287 VLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred EEECccccchhHHHHHHHHHC
Confidence 589999999999999998886
No 47
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=69.39 E-value=1.9 Score=33.38 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=33.6
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEE-ecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLI-SANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~-~~~~~~~~~~~aW~Ggsila~ 54 (102)
+++||.+.-+++.+.|+++|.. .+. . +++|++..=+|+++++.
T Consensus 244 ~~~GGva~N~~l~~al~~~Lg~--------~v~~~---p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 244 FITGGIAKNPGVVKRIERILGI--------KAVDT---KIDSQIAGALGAALFGY 287 (293)
T ss_pred EEECcccccHHHHHHHHHHhCC--------CceeC---CCCccHHHHHHHHHHHH
Confidence 5799999999999999988842 222 2 45688888889999884
No 48
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=64.61 E-value=8.3 Score=28.52 Aligned_cols=43 Identities=28% Similarity=0.456 Sum_probs=32.0
Q ss_pred CCCCChHHHHHHHHhhhCCC-CccEEEEecCCCCCcccceeehhhhhccc
Q psy15064 7 LRLMGFPERLNRDLSVRIPA-SMKLKLISANGSAERRFGAWIGGSILASI 55 (102)
Q Consensus 7 s~~pGf~~RL~~EL~~l~p~-~~~i~v~~~~~~~~~~~~aW~Ggsila~~ 55 (102)
-.+|+|.++|++-|+.+.+. ..+|.+.. .. ..+=+||++.|..
T Consensus 197 ~~~p~f~~~l~~~l~~L~~~~~~~v~~~~---~~---dgsg~GAAi~AA~ 240 (243)
T PF03727_consen 197 EKYPNFRERLQEALDELLPEEGCKVEFVL---SE---DGSGVGAAIAAAV 240 (243)
T ss_dssp HHSTTHHHHHHHHHHHHSTT-CEEEEEEE----S---STHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHhcccccceEEEEE---ec---CchHHHHHHHHHH
Confidence 36899999999999999987 44566665 33 3356799987753
No 49
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=64.29 E-value=3 Score=33.65 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=35.9
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
|++||++.-.++..-|++.+. .+|+. |+.+++.-=+|++++++
T Consensus 347 v~~GGva~n~av~~ale~~lg--------~~V~v---P~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 347 VLQGGVALNKAVVRALEDLLG--------RKVIV---PPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEECcchhhHHHHHHHHHHhC--------Ceeec---CCccchhhHHHHHHHHh
Confidence 589999999999988887774 56666 78889888889999885
No 50
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=62.82 E-value=5.5 Score=30.14 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.0
Q ss_pred CeeccCCCCCChHHHHHHHHh
Q psy15064 1 MILGTALRLMGFPERLNRDLS 21 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~ 21 (102)
.|+||++++||+.+-++++|.
T Consensus 231 ~lvGGac~~~g~e~~Fe~~l~ 251 (277)
T COG4820 231 WLVGGACMQPGVEELFEKQLA 251 (277)
T ss_pred EEecccccCccHHHHHHHHhc
Confidence 479999999999999999983
No 51
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=60.64 E-value=0.57 Score=34.65 Aligned_cols=47 Identities=17% Similarity=0.332 Sum_probs=29.2
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILA 53 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila 53 (102)
+|+||...-..+.+.|.+.|++..+.. .+. . +..|++.+..||+++|
T Consensus 225 ~l~GGv~~~~~~~~~l~~~l~~~~~~~-~~~--~---~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 225 VLSGGVFKNSPLVKALRDALKEKLPKV-PII--I---PVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEESGGGGCHHHHHHHGGGS-HHHHCC-TCE--C---ECCGSSHHHHHHHHHH
T ss_pred EEECCccCchHHHHHHHHHHHHhcCCC-ceE--E---CCCCCccHHHHHHHhC
Confidence 467887666556666655555554432 223 2 3467888999998875
No 52
>PRK13317 pantothenate kinase; Provisional
Probab=52.82 E-value=11 Score=28.61 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=34.7
Q ss_pred Ceec-cCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcc
Q psy15064 1 MILG-TALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILAS 54 (102)
Q Consensus 1 vL~G-G~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~ 54 (102)
+++| |-+..|++.+.|.+.++. ...+++. +++++|..=+||++++.
T Consensus 227 vf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~---p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 227 VYIGSTLTNNPLLQEIIESYTKL-----RNCTPIF---LENGGYSGAIGALLLAT 273 (277)
T ss_pred EEECcccccCHHHHHHHHHHHhc-----CCceEEe---cCCCchhHHHHHHHHhh
Confidence 4677 699999999999976643 2356666 67888888889987764
No 53
>KOG0333|consensus
Probab=49.50 E-value=7.7 Score=32.98 Aligned_cols=14 Identities=50% Similarity=1.058 Sum_probs=12.0
Q ss_pred hhhccCCCCCCCCC
Q psy15064 89 NELAGRGLDKPDLS 102 (102)
Q Consensus 89 ~~~~~~~~~~~~~~ 102 (102)
-.+||||+|-||.|
T Consensus 574 TDvAgRGIDIpnVS 587 (673)
T KOG0333|consen 574 TDVAGRGIDIPNVS 587 (673)
T ss_pred ecccccCCCCCccc
Confidence 35799999999986
No 54
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=49.04 E-value=9.3 Score=20.79 Aligned_cols=12 Identities=42% Similarity=0.819 Sum_probs=10.2
Q ss_pred cccccHHHHhhc
Q psy15064 60 QMWISSQEYEEG 71 (102)
Q Consensus 60 ~~~Itk~eY~E~ 71 (102)
..|||++||+|.
T Consensus 24 ~g~IT~eey~eI 35 (40)
T PF09693_consen 24 AGWITKEEYKEI 35 (40)
T ss_pred cCeECHHHHHHh
Confidence 459999999984
No 55
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=47.97 E-value=6.3 Score=31.29 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=29.8
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILA 53 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila 53 (102)
+|+||.+++.||.+.|.+|. .+-|+. .++|-.++=+|.....
T Consensus 288 vltGGGalLrglD~~i~~et--------~~pv~i---a~~pL~~Va~G~G~~l 329 (342)
T COG1077 288 VLTGGGALLRGLDRLLSEET--------GVPVII---ADDPLTCVAKGTGKAL 329 (342)
T ss_pred EEecchHHhcCchHhHHhcc--------CCeEEE---CCChHHHHHhccchhh
Confidence 58999999999999999775 334444 4566666656655543
No 56
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=46.29 E-value=2.2 Score=28.48 Aligned_cols=60 Identities=17% Similarity=0.343 Sum_probs=33.5
Q ss_pred hHHHHHHHHhhh----------CCCCccEEEEecCCCCCcccceeehhhhhccccccccccccHHHHhhcCchh
Q psy15064 12 FPERLNRDLSVR----------IPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKGQ 75 (102)
Q Consensus 12 f~~RL~~EL~~l----------~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~~~~~~~Itk~eY~E~G~~i 75 (102)
+..+|++|+... +|..+.|.+.. .....+.+| +..+...+..+-...+..+.|.-.|+-.
T Consensus 29 Ia~~L~remd~~a~~~~~~r~~aPN~y~V~Ls~---~D~~~l~~~-~~~l~~el~~~l~~~a~~qgy~~~G~v~ 98 (116)
T PF12401_consen 29 IAKALRREMDDQARVVSRGRTLAPNVYTVELSP---EDYERLSPW-GDRLARELADYLAEHAREQGYTFVGPVT 98 (116)
T ss_dssp HHHHHHHHHHHT-B---TT--B---EEEEEEEH---HHHHHH-S--SHHHHHHHHHHHHHHHHHHT-B-SS--E
T ss_pred HHHHHHHHHHhCCeecCCCCEEcCeeEEEEECH---HHHHHHhhh-HHHHHHHHHHHHHHHHHHCCCeecCCEE
Confidence 567888888866 34445555554 445677778 5665555666666666777777777643
No 57
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=46.17 E-value=11 Score=21.15 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=11.5
Q ss_pred cccc-ccccHHHHhhc
Q psy15064 57 TFQQ-MWISSQEYEEG 71 (102)
Q Consensus 57 ~~~~-~~Itk~eY~E~ 71 (102)
.|-. .|||.+||+|.
T Consensus 25 ~~V~~~~IT~eey~eI 40 (45)
T TIGR01669 25 KFVEKKLITREQYKVI 40 (45)
T ss_pred HHhhcCccCHHHHHHH
Confidence 3444 69999999984
No 58
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=39.92 E-value=13 Score=30.22 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=30.4
Q ss_pred CeeccCCCCCChHHHHHHHHhhhCCCCccEEEEecC-------CCCCcccceeehhhhhccc
Q psy15064 1 MILGTALRLMGFPERLNRDLSVRIPASMKLKLISAN-------GSAERRFGAWIGGSILASI 55 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~-------~~~~~~~~aW~Ggsila~~ 55 (102)
||+||.+.+||+.+=-++=+.. .+++-.|. ...+|.|++=+|.-.++..
T Consensus 325 VlTGG~a~l~Gi~elA~~if~~------~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~ 380 (418)
T COG0849 325 VLTGGGAQLPGIVELAERIFGR------PVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGAL 380 (418)
T ss_pred EEECchhcCccHHHHHHHhcCC------ceEeCCCccccCchhhccCchhhhhHHHHHHHhh
Confidence 6899999999998766544432 22222210 0234788887777766653
No 59
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=36.46 E-value=20 Score=18.63 Aligned_cols=19 Identities=0% Similarity=0.001 Sum_probs=13.1
Q ss_pred eccCCCCCChHHHHHHHHhhh
Q psy15064 3 LGTALRLMGFPERLNRDLSVR 23 (102)
Q Consensus 3 ~GG~s~~pGf~~RL~~EL~~l 23 (102)
|+|.+ |-|..+|.+||.+.
T Consensus 11 TnG~s--P~la~~iR~~ie~~ 29 (30)
T PF14824_consen 11 TNGKS--PRLARLIRKEIERL 29 (30)
T ss_dssp ESSS---HHHHHHHHHHHHHH
T ss_pred CCCCC--hHHHHHHHHHHHHh
Confidence 45555 77888888888754
No 60
>PLN02596 hexokinase-like
Probab=35.15 E-value=46 Score=27.63 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=31.4
Q ss_pred CCCChHHHHHHHHhhhCCCC--ccEEEEecCCCCCcccceeehhhhhcccc
Q psy15064 8 RLMGFPERLNRDLSVRIPAS--MKLKLISANGSAERRFGAWIGGSILASIG 56 (102)
Q Consensus 8 ~~pGf~~RL~~EL~~l~p~~--~~i~v~~~~~~~~~~~~aW~Ggsila~~~ 56 (102)
.+|+|.++|++-|+++++.. .+|.+.. ..| .+=+||+++|.+.
T Consensus 440 ~~p~f~~~l~~al~ellg~~~~~~i~~~~---s~D---GSG~GAAl~AA~~ 484 (490)
T PLN02596 440 HYRVFRNYLHSSVWEMLGSELSDNVVIEH---SHG---GSGAGALFLAACQ 484 (490)
T ss_pred eCcCHHHHHHHHHHHHhCcccCCcEEEEE---ccC---chhHHHHHHHHhh
Confidence 68999999999999988643 3566654 222 3567999998753
No 61
>PTZ00107 hexokinase; Provisional
Probab=34.72 E-value=45 Score=27.40 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=31.5
Q ss_pred CCCCChHHHHHHHHhhhC-CCCccEEEEecCCCCCcccceeehhhhhccc
Q psy15064 7 LRLMGFPERLNRDLSVRI-PASMKLKLISANGSAERRFGAWIGGSILASI 55 (102)
Q Consensus 7 s~~pGf~~RL~~EL~~l~-p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~ 55 (102)
-.+|+|.+++++-|..++ +...+|.+.. ..| .+=+||+++|..
T Consensus 416 ~~~p~f~~~~~~~l~~ll~~~~~~v~l~~---a~D---GSg~GAAl~AA~ 459 (464)
T PTZ00107 416 VKNPWFRRLLQEYINSILGPDAGNVVFYL---ADD---GSGKGAAIIAAM 459 (464)
T ss_pred ecCccHHHHHHHHHHHHhCCCCCcEEEEE---ccC---chHHHHHHHHHH
Confidence 358999999999999887 4434666665 333 366799998864
No 62
>PLN02914 hexokinase
Probab=29.57 E-value=59 Score=27.00 Aligned_cols=43 Identities=12% Similarity=0.288 Sum_probs=31.4
Q ss_pred CCCCChHHHHHHHHhhhCCCCc--cEEEEecCCCCCcccceeehhhhhccc
Q psy15064 7 LRLMGFPERLNRDLSVRIPASM--KLKLISANGSAERRFGAWIGGSILASI 55 (102)
Q Consensus 7 s~~pGf~~RL~~EL~~l~p~~~--~i~v~~~~~~~~~~~~aW~Ggsila~~ 55 (102)
-.+|+|.++|++-|.+++.... +|.+.. ..| .+=+||+++|.+
T Consensus 442 ~~~p~f~~~l~~~l~ellg~~~~~~i~i~~---a~D---GSGvGAAl~AA~ 486 (490)
T PLN02914 442 EKYPQYRRYMQDAVTELLGLELSKNIAIEH---TKD---GSGIGAALLAAT 486 (490)
T ss_pred hcCccHHHHHHHHHHHHhCcccCCcEEEEE---ccC---chHHHHHHHHHH
Confidence 4689999999999998875432 566665 333 366799998865
No 63
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=29.36 E-value=46 Score=24.63 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=26.0
Q ss_pred eeccCCCCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhc
Q psy15064 2 ILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILA 53 (102)
Q Consensus 2 L~GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila 53 (102)
|.|+.+..+-|-+++++.+++... ...+.+.. ......++=+||+.++
T Consensus 239 lgG~~~~~~~~~~~i~~~l~~~~~-~~~~~i~~---s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 239 LGGSVGLAEGYLELVQAYLAQEPA-IYHVPLLA---AHYRHDAGLLGAALWA 286 (291)
T ss_pred EcCccccHHHHHHHHHHHHHhccc-ccCCeEEE---CccCCchhhhhHHHHh
Confidence 445554555667777777766422 22455554 3334444556777654
No 64
>KOG0100|consensus
Probab=28.37 E-value=39 Score=28.27 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=16.8
Q ss_pred CeeccCCCCCChHHHHHHHHh
Q psy15064 1 MILGTALRLMGFPERLNRDLS 21 (102)
Q Consensus 1 vL~GG~s~~pGf~~RL~~EL~ 21 (102)
||+||++.+|-..+-|+.=..
T Consensus 367 VLVGGsTrIPKvQqllk~fF~ 387 (663)
T KOG0100|consen 367 VLVGGSTRIPKVQQLLKDFFN 387 (663)
T ss_pred EEecCcccChhHHHHHHHHhC
Confidence 689999999998887765443
No 65
>PLN02362 hexokinase
Probab=27.40 E-value=68 Score=26.79 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=31.5
Q ss_pred CCCCChHHHHHHHHhhhCCCC--ccEEEEecCCCCCcccceeehhhhhccc
Q psy15064 7 LRLMGFPERLNRDLSVRIPAS--MKLKLISANGSAERRFGAWIGGSILASI 55 (102)
Q Consensus 7 s~~pGf~~RL~~EL~~l~p~~--~~i~v~~~~~~~~~~~~aW~Ggsila~~ 55 (102)
-.+|+|.+++++-|+++++.. .+|.+.. ..| .+=+||+++|..
T Consensus 453 e~yp~f~~~~~~~l~ell~~~~~~~v~i~~---a~D---GSgvGAAl~AA~ 497 (509)
T PLN02362 453 TNYTMFREYLHEALNEILGEDVAQHVILKA---TED---GSGIGSALLAAS 497 (509)
T ss_pred hcCcCHHHHHHHHHHHHhCcccCceEEEEE---ccC---chHHHHHHHHHH
Confidence 468999999999999987543 3455554 333 366899999875
No 66
>KOG1369|consensus
Probab=26.52 E-value=76 Score=26.38 Aligned_cols=43 Identities=26% Similarity=0.367 Sum_probs=33.4
Q ss_pred CCCChHHHHHHHHhhhCCCCccEEEEecCCCCCcccceeehhhhhcccc
Q psy15064 8 RLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIG 56 (102)
Q Consensus 8 ~~pGf~~RL~~EL~~l~p~~~~i~v~~~~~~~~~~~~aW~Ggsila~~~ 56 (102)
+.|.|.+.|..-|.++......|.+.. ..| .+=.||+++|...
T Consensus 425 ~yP~f~~~m~~~l~eLlg~~~~v~i~~---s~d---gSg~GAAL~Aav~ 467 (474)
T KOG1369|consen 425 NHPFFREYLKEALRELLGPSIHVKLVL---SED---GSGRGAALIAAVA 467 (474)
T ss_pred cCchHHHHHHHHHHHHhCCCceEEEEE---CCC---CccccHHHHHHHH
Confidence 689999999999999987556777776 333 3567999988754
No 67
>PLN02405 hexokinase
Probab=26.51 E-value=68 Score=26.70 Aligned_cols=43 Identities=19% Similarity=0.294 Sum_probs=31.6
Q ss_pred CCCCChHHHHHHHHhhhCCCC--ccEEEEecCCCCCcccceeehhhhhccc
Q psy15064 7 LRLMGFPERLNRDLSVRIPAS--MKLKLISANGSAERRFGAWIGGSILASI 55 (102)
Q Consensus 7 s~~pGf~~RL~~EL~~l~p~~--~~i~v~~~~~~~~~~~~aW~Ggsila~~ 55 (102)
-.+|+|.+++++-|.++++.. -+|.+.. ..| .+=+||+++|..
T Consensus 444 e~yp~f~~~~~~~l~ell~~~~~~~v~l~~---a~D---GSGvGAAl~AA~ 488 (497)
T PLN02405 444 EHYTEFSKCMESTLKELLGEEVSESIEVEH---SND---GSGIGAALLAAS 488 (497)
T ss_pred hcCcCHHHHHHHHHHHHhCcccCceEEEEE---ecC---chHHHHHHHHHH
Confidence 468999999999999988543 3566665 333 366799998865
No 68
>KOG3445|consensus
Probab=25.54 E-value=72 Score=22.37 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=23.2
Q ss_pred ccCCCCCChHHHHHHHHhhhCCCCccEEEEe
Q psy15064 4 GTALRLMGFPERLNRDLSVRIPASMKLKLIS 34 (102)
Q Consensus 4 GG~s~~pGf~~RL~~EL~~l~p~~~~i~v~~ 34 (102)
||+| .|+.+.|+.||-++...+-.|.+++
T Consensus 34 ggSS--rGmR~Fle~~L~~~a~enP~v~i~v 62 (145)
T KOG3445|consen 34 GGSS--RGMREFLESELPDLARENPGVVIYV 62 (145)
T ss_pred CCcc--HHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 5666 5999999999999887666677766
No 69
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=22.71 E-value=36 Score=12.47 Aligned_cols=6 Identities=33% Similarity=1.176 Sum_probs=3.0
Q ss_pred ccccee
Q psy15064 41 RRFGAW 46 (102)
Q Consensus 41 ~~~~aW 46 (102)
|.|.+|
T Consensus 2 pafnsw 7 (8)
T PF08260_consen 2 PAFNSW 7 (8)
T ss_pred cccccc
Confidence 445555
No 70
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=22.68 E-value=67 Score=23.90 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=26.6
Q ss_pred eeccCCCCCChHHHHHHHHhhhC-CCCccEEEEecCCCCCcccceeehhhhhc
Q psy15064 2 ILGTALRLMGFPERLNRDLSVRI-PASMKLKLISANGSAERRFGAWIGGSILA 53 (102)
Q Consensus 2 L~GG~s~~pGf~~RL~~EL~~l~-p~~~~i~v~~~~~~~~~~~~aW~Ggsila 53 (102)
|.|+-+..+-|-+.|++.+++.. |...++.+.. ..-...+.=+||+.++
T Consensus 251 lgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~---s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 251 LGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEK---ARHGDAGGVRGAAFLH 300 (303)
T ss_pred ECCcccChHHHHHHHHHHHHHHhcccccCceEEE---cccCchHHHHhHHHHh
Confidence 44444556777888888887643 2222344444 2233334445777654
No 71
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=21.77 E-value=46 Score=22.92 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=29.7
Q ss_pred ccccHHHHhhcCc-hhhhhhccccccccchhhccCCCCCC
Q psy15064 61 MWISSQEYEEGGK-GQVDRKCPRAFAGRKNELAGRGLDKP 99 (102)
Q Consensus 61 ~~Itk~eY~E~G~-~i~~rk~~~~~~~~~~~~~~~~~~~~ 99 (102)
.-|||+.-+..|- +--.|-|++-|....++.++|--..|
T Consensus 102 QGITReQV~rdGLP~GsYRiCFrL~~~~~~e~~~~~CSaP 141 (145)
T TIGR02542 102 QGITREQVQRDGLPEGSYRICFRLFNATQFEEISRSCSAP 141 (145)
T ss_pred ccccHHHHhhcCCCCCceEEEEEEeccchhHHHhhhcCCC
Confidence 4578888877774 44667799999999999998866554
No 72
>PF05295 Luciferase_N: Luciferase/LBP N-terminal domain; InterPro: IPR007959 Proteins in this entry belong to a family of dinoflagellate luciferase and luciferin binding proteins. Luciferase is involved in catalysing the light emitting reaction in bioluminescence and luciferin binding protein (LBP) is known to bind to luciferin (the substrate for luciferase) to stop it reacting with the enzyme and therefore switching off the bioluminescence function. The expression of these two proteins is controlled by a circadian clock at the translational level, with synthesis and degradation occurring on a daily basis []. This entry consists of a presumed N-terminal domain that is conserved between dinoflagellate luciferase and luciferin binding proteins. This domain is not, however, the catalytic part of the protein. It has been suggested that this region may mediate an interaction between LBP and Luciferase or their association with the vacuolar membrane []. More information about these proteins can be found at Protein of the Month: Luciferase [].
Probab=21.38 E-value=32 Score=21.76 Aligned_cols=19 Identities=47% Similarity=1.008 Sum_probs=14.0
Q ss_pred hccccccccccccHHHHhhc
Q psy15064 52 LASIGTFQQMWISSQEYEEG 71 (102)
Q Consensus 52 la~~~~~~~~~Itk~eY~E~ 71 (102)
+.+.++|.++| |..|||..
T Consensus 29 lesvsDFAn~W-Ts~eyE~G 47 (82)
T PF05295_consen 29 LESVSDFANYW-TSAEYEKG 47 (82)
T ss_pred hhhHHHHHhhh-hHHHHHhh
Confidence 44567899999 66788653
No 73
>KOG0331|consensus
Probab=20.60 E-value=47 Score=27.92 Aligned_cols=14 Identities=50% Similarity=0.949 Sum_probs=11.3
Q ss_pred chhhccCCCCCCCC
Q psy15064 88 KNELAGRGLDKPDL 101 (102)
Q Consensus 88 ~~~~~~~~~~~~~~ 101 (102)
--.+|+||||-||.
T Consensus 397 ATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 397 ATDVAARGLDVPDV 410 (519)
T ss_pred EcccccccCCCccc
Confidence 34579999999986
No 74
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=20.38 E-value=72 Score=19.09 Aligned_cols=12 Identities=25% Similarity=0.307 Sum_probs=9.6
Q ss_pred HHHHHHHHhhhC
Q psy15064 13 PERLNRDLSVRI 24 (102)
Q Consensus 13 ~~RL~~EL~~l~ 24 (102)
..||++||+.+-
T Consensus 36 r~rL~kEL~d~D 47 (59)
T PF12065_consen 36 RQRLRKELQDMD 47 (59)
T ss_pred HHHHHHHHHHcc
Confidence 468999998874
No 75
>smart00340 HALZ homeobox associated leucin zipper.
Probab=20.15 E-value=78 Score=17.78 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=9.6
Q ss_pred HHHHHHHHhhhC
Q psy15064 13 PERLNRDLSVRI 24 (102)
Q Consensus 13 ~~RL~~EL~~l~ 24 (102)
..||++||.++.
T Consensus 21 NrRL~ke~~eLr 32 (44)
T smart00340 21 NRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHH
Confidence 479999998874
Done!