RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15064
(102 letters)
>gnl|CDD|200935 pfam00022, Actin, Actin.
Length = 367
Score = 117 bits (296), Expect = 3e-33
Identities = 43/78 (55%), Positives = 56/78 (71%), Gaps = 3/78 (3%)
Query: 4 GTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWI 63
GT L GF ERL ++L+ P+ +K+K+I+ ER++ AWIGGSILAS+GTFQQMW+
Sbjct: 293 GTTL-FPGFTERLEKELAQLAPSGVKVKIIAPP--NERKYSAWIGGSILASLGTFQQMWV 349
Query: 64 SSQEYEEGGKGQVDRKCP 81
S QEYEE G V+RKC
Sbjct: 350 SKQEYEEHGSSVVERKCF 367
>gnl|CDD|214592 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 95.8 bits (239), Expect = 5e-25
Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 3/70 (4%)
Query: 11 GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
GF ERL ++L P +K+K+I+ ER++ W+GGSILAS+ TF+ MWI+ +EYEE
Sbjct: 306 GFGERLEKELKQLAPKKLKVKVIA---PPERKYSVWLGGSILASLSTFEDMWITKKEYEE 362
Query: 71 GGKGQVDRKC 80
G V+RKC
Sbjct: 363 SGSQIVERKC 372
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional.
Length = 378
Score = 90.2 bits (224), Expect = 6e-23
Identities = 36/77 (46%), Positives = 54/77 (70%), Gaps = 4/77 (5%)
Query: 4 GTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWI 63
GT + G PERL ++L+ P++MK+K+++ ER++ WIGGSIL+S+ TFQQMW+
Sbjct: 305 GTTM-YRGLPERLTKELTTLAPSTMKIKVVA---PPERKYSVWIGGSILSSLPTFQQMWV 360
Query: 64 SSQEYEEGGKGQVDRKC 80
+ +EY+E G V RKC
Sbjct: 361 TKEEYDESGPSIVHRKC 377
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional.
Length = 376
Score = 84.0 bits (207), Expect = 1e-20
Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 3/70 (4%)
Query: 11 GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
G +R+N++L+ P++MK+K+I+ ER++ WIGGSILAS+ TFQQMWIS +EY+E
Sbjct: 309 GIADRMNKELTALAPSTMKIKIIA---PPERKYSVWIGGSILASLSTFQQMWISKEEYDE 365
Query: 71 GGKGQVDRKC 80
G V RKC
Sbjct: 366 SGPSIVHRKC 375
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 69.0 bits (169), Expect = 4e-15
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 11 GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
GF ERL ++L+ P+ K +S + AW+G SILAS+ TFQQ+WI+ +EYEE
Sbjct: 377 GFAERLQKELTSLAPSIWK---VSVIPPPDPSLDAWLGASILASLETFQQLWITKEEYEE 433
Query: 71 GGKGQVDRKC 80
G + K
Sbjct: 434 HGPDILQEKR 443
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional.
Length = 380
Score = 67.7 bits (165), Expect = 9e-15
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 4 GTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWI 63
GT + GF +RL ++ P + ++ ISA ER+F +IGGSILAS+ TF+++WI
Sbjct: 307 GTTM-FHGFGDRLLNEIRKFAPKDITIR-ISA--PPERKFSTFIGGSILASLATFKKIWI 362
Query: 64 SSQEYEEGGKGQVDRK 79
S QE++E G + RK
Sbjct: 363 SKQEFDEYGSVILHRK 378
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional.
Length = 375
Score = 64.0 bits (155), Expect = 2e-13
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 4 GTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWI 63
GT L G RL+ +L+ +P+ +K+++ + +RRF AWIGGSI ++ T Q WI
Sbjct: 302 GTTL-FPGIANRLSNELTNLVPSQLKIQVAA---PPDRRFSAWIGGSIQCTLSTQQPQWI 357
Query: 64 SSQEYEEGGKGQVDRKC 80
QEY+E G V RKC
Sbjct: 358 KRQEYDEQGPSIVHRKC 374
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
Length = 414
Score = 44.3 bits (105), Expect = 2e-06
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 19/78 (24%)
Query: 11 GFPERLNRDLSVRI----------------PASMKLKLISANGSAERRFGAWIGGSILAS 54
GF +RL RD+ R+ P + + ++S +R+ W GGS+LAS
Sbjct: 327 GFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHP---RQRYAVWYGGSMLAS 383
Query: 55 IGTFQQMWISSQEYEEGG 72
F+++ + EY+E G
Sbjct: 384 SPEFEKVCHTKAEYDEYG 401
>gnl|CDD|181884 PRK09469, glnA, glutamine synthetase; Provisional.
Length = 469
Score = 28.2 bits (63), Expect = 0.61
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 42 RFGAWIGGSILASIGTFQQMWISSQEYEEGGKG 74
RFG+ I GS +A I + W S +YE G KG
Sbjct: 140 RFGSSISGSHVA-IDDIEAAWNSGTKYEGGNKG 171
>gnl|CDD|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (product of the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (product of the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and 2. SMCT1(the product
of the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. SMCT2 (product of the SLC5A12
gene) is a low-affinity transporter for short-chain
fatty acids, lactate, pyruvate, and nicotinate. This
subfamily belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 477
Score = 26.7 bits (60), Expect = 2.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 22 VRIPASMKLKLISANGSAERRFGAWI 47
V +P +L L S E+RFG +
Sbjct: 86 VLLPLFYRLNLTSIYEYLEKRFGRSV 111
>gnl|CDD|176978 CHL00037, petA, cytochrome f.
Length = 320
Score = 26.4 bits (59), Expect = 3.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 22 VRIPASMKLKLISANGS 38
V+IP M+LK + ANG
Sbjct: 84 VKIPYDMQLKQVLANGK 100
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one
LDL-receptor class A domain, one C-type lectin family
domain, and 16-18 putative TMSs in positions between
residues 2200 and 4100. Polycystin-L has been shown to
be a cation (Na+, K+ and Ca2+) channel that is activated
by Ca2+. Two members of the PCC family (polycystin 1 and
2) are mutated in autosomal dominant polycystic kidney
disease, and polycystin-L is deleted in mice with renal
and retinal defects. Note: this model is restricted to
the amino half for technical reasons.
Length = 2740
Score = 26.2 bits (57), Expect = 3.5
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 22 VRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEEGGKG 74
V A S +R G WIG S + + E EE +G
Sbjct: 359 VDNDALQNFLARKVTHSLDR--GVWIGFSDVNGAEKGPAHQGEAFEAEECEEG 409
>gnl|CDD|204444 pfam10319, 7TM_GPCR_Srj, Serpentine type 7TM GPCR chemoreceptor
Srj. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srj is part of the Str
superfamily of chemoreceptors. The srj family is
designated as the out-group based on its location in
preliminary phylogenetic analyses of the entire
superfamily. Chemoperception is one of the central
senses of soil nematodes like C. elegans which are
otherwise 'blind' and 'deaf'.
Length = 310
Score = 26.0 bits (58), Expect = 3.6
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 27 SMKLKLISA---NGSAERRFGAWIGGSILASIGTF 58
SM + ++ A S E F +WIG +L I +
Sbjct: 176 SMDINMLGALYWEASDETVFRSWIGIILLTVISVY 210
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine
transporters, SERT, NET, DAT1 and related proteins;
solute binding domain. This subgroup represents the
solute-binding domain of transmembrane transporters that
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: NET
which transports norepinephrine, SERT which transports
serotonin, and DAT1 which transports dopamine. These
transporters may play a role in diseases including
depression, anxiety disorders, attention-deficit
hyperactivity disorder, and in the control of human
behavior and emotional states. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 539
Score = 25.3 bits (56), Expect = 6.5
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 22 VRIPASMKLKLISANGSAERRFGAWI 47
V IP KLI G+ + R I
Sbjct: 511 VCIPIYAIYKLIITPGTFKERIVYLI 536
>gnl|CDD|151761 pfam11320, DUF3122, Protein of unknown function (DUF3122). This
family of proteins with unknown function appear to be
restricted to Cyanobacteria.
Length = 134
Score = 25.0 bits (55), Expect = 7.3
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 7 LRLMGFPERLNRDLSVRIPASMKLKLISANG 37
LRL+GFP S+R+ L++ + G
Sbjct: 47 LRLVGFPG------SLRLDHPQPLQVTTGRG 71
>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 559
Score = 25.3 bits (55), Expect = 8.0
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 5 TALRLM---GFPERLNRDLSVRIPASMKL 30
AL LM GF L RD++++IPA +L
Sbjct: 296 QALELMDDYGFDAGLTRDVAMQIPADTEL 324
>gnl|CDD|219796 pfam08325, WLM, WLM domain. This is a predicted metallopeptidase
domain called WLM (Wss1p-like metalloproteases). These
are linked to the Ub-system by virtue of fusions with
the UB-binding PUG (PUB), Ub-like, and Little Finger
domains. More specifically, genetic evidence implicates
the WLM family in de-SUMOylation.
Length = 183
Score = 25.0 bits (55), Expect = 8.8
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 8 RLMGFPERLNRDLSVRIPASMKLKLISANGSAERRF 43
L G ERL D R S + +A AERR
Sbjct: 150 GLSGGGERLGGDSLSRSGESARELAAAA---AERRL 182
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.406
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,294,502
Number of extensions: 439060
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 23
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)