RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15064
(102 letters)
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 114 bits (287), Expect = 1e-31
Identities = 28/77 (36%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 4 GTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWI 63
GT+ + G +RL +L+ +P S+K ++++ + ER++ +W+GGSIL S+GTF Q+W+
Sbjct: 422 GTSS-IPGLSDRLMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWV 479
Query: 64 SSQEYEEGGKGQVDRKC 80
+EYEE G ++
Sbjct: 480 GKKEYEEVGVERLLNDR 496
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 111 bits (279), Expect = 5e-31
Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 11 GFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQMWISSQEYEE 70
G +R+ ++++ P++MK+K+I+ ER++ WIGGSILAS+ TFQQMWI+ QEY+E
Sbjct: 308 GIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILASLSTFQQMWITKQEYDE 364
Query: 71 GGKGQVDRKC 80
G V RKC
Sbjct: 365 AGPSIVHRKC 374
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Length = 418
Score = 93.6 bits (233), Expect = 3e-24
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 13/83 (15%)
Query: 11 GFPERLNRDLSVRIPASMKLKLISANG-------------SAERRFGAWIGGSILASIGT 57
F RL RDL + A +KL + G +R+ W GGS+LAS
Sbjct: 330 DFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPE 389
Query: 58 FQQMWISSQEYEEGGKGQVDRKC 80
F Q+ + ++YEE G
Sbjct: 390 FYQVCHTKKDYEEIGPSICRHNP 412
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding,
cytoskeleton, nucleot binding, WD repeat; HET: ATP;
3.78A {Schizosaccharomyces pombe}
Length = 427
Score = 93.7 bits (233), Expect = 3e-24
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 11/81 (13%)
Query: 11 GFPERLNRDLSVRIPASMKLKLISANGSA-----------ERRFGAWIGGSILASIGTFQ 59
F RL RDL + + + + + +R W GGS+LA F
Sbjct: 341 NFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFG 400
Query: 60 QMWISSQEYEEGGKGQVDRKC 80
+ +YEE G R
Sbjct: 401 SYCHTKADYEEYGASIARRYQ 421
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
3dxm_B* 3rse_B 2p9k_B*
Length = 394
Score = 87.5 bits (217), Expect = 4e-22
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 11 GFPERLNRDLS-----------VRIPASMKLKLISANGSAERRFGAWIGGSILASI-GTF 58
G P RL R+L V + K+++ R+ ++GG++LA I
Sbjct: 312 GLPSRLERELKQLYLERVLKGDVEKLSKFKIRIED---PPRRKHMVFLGGAVLADIMKDK 368
Query: 59 QQMWISSQEYEEGGKGQVDRKC 80
W++ QEY+E G +++
Sbjct: 369 DNFWMTRQEYQEKGVRVLEKLG 390
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics,
structural genomic consortium, SGC, hydrolase; 2.60A
{Homo sapiens}
Length = 191
Score = 26.4 bits (59), Expect = 1.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 71 GGKGQVDRKCP-RAF-AGRKNEL-----AGRGLDKPD 100
GGK Q +R AF G+K+ L A +GLD P
Sbjct: 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPA 122
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation,
nucleotide-binding, hydrolase, RNA-binding, ATP-binding,
DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Length = 185
Score = 24.9 bits (55), Expect = 4.7
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 71 GGKGQVDRKCP-RAF-AGRKNEL-----AGRGLDKPD 100
G + Q DR+ F +G+ L A RGLD +
Sbjct: 78 GDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 114
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 24.4 bits (54), Expect = 7.3
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 71 GGKGQVDRKCP-RAF-AGRKNEL-----AGRGLDKPDL 101
G + Q DR+ F +G+ L A RGLD ++
Sbjct: 308 GDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 345
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 24.4 bits (52), Expect = 9.3
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 41 RRFGAWIGGSILASIGTFQQMWISSQEYEE 70
+ + S L +G + + + QEYE+
Sbjct: 631 ETLASRVAASQLTCLGCLELIAKNRQEYED 660
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.406
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,560,550
Number of extensions: 80671
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 12
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)