RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15064
         (102 letters)



>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 258

 Score = 82.5 bits (203), Expect = 3e-21
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 15/94 (15%)

Query: 1   MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANG-------------SAERRFGAWI 47
           +  G+ +    F  RL RDL   + A +KL    + G                +R+  W 
Sbjct: 161 LSGGSTM-FRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWF 219

Query: 48  GGSILASIGTFQQMWISSQEYEEGGKGQVD-RKC 80
           GGS+LAS   F Q+  + ++YEE G         
Sbjct: 220 GGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPV 253


>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 225

 Score = 75.1 bits (184), Expect = 1e-18
 Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 3/72 (4%)

Query: 1   MILGTALRLMGFPERLNRDLSVRIPASMKLKLISANGSAERRFGAWIGGSILASIGTFQQ 60
           ++ G      G  +R+ ++++   P++MK+K+I+     ER++  WIGGSILAS+ TFQQ
Sbjct: 152 VMSGGTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILASLSTFQQ 208

Query: 61  MWISSQEYEEGG 72
           MWI+ QEY+E G
Sbjct: 209 MWITKQEYDEAG 220


>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 190

 Score = 24.7 bits (53), Expect = 2.2
 Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)

Query: 4   GTALRLMGFPERLNRDLSVRIPASMK 29
           G+ +   G P RL R+L       + 
Sbjct: 153 GSTM-YPGLPSRLERELKQLYLERVL 177


>d1e2wa1 b.2.6.1 (A:1-168,A:233-251) Cytochrome f, large domain
          {Chlamydomonas reinhardtii [TaxId: 3055]}
          Length = 187

 Score = 23.9 bits (52), Expect = 3.9
 Identities = 5/17 (29%), Positives = 10/17 (58%)

Query: 22 VRIPASMKLKLISANGS 38
          + +P   ++K + ANG 
Sbjct: 49 IELPYDKQVKQVLANGK 65


>d1ci3m1 b.2.6.1 (M:1-169,M:232-249) Cytochrome f, large domain
          {Phormidium laminosum [TaxId: 32059]}
          Length = 187

 Score = 23.5 bits (51), Expect = 6.0
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 22 VRIPASMKLKLISANGS 38
          V+IP    ++ + A+GS
Sbjct: 49 VKIPYDHSVQQVQADGS 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0520    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 371,451
Number of extensions: 14611
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 6
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)