Query psy15065
Match_columns 773
No_of_seqs 633 out of 3199
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 19:32:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1577|consensus 100.0 8E-63 1.7E-67 509.2 29.5 284 420-755 6-289 (300)
2 COG0656 ARA1 Aldo/keto reducta 100.0 5.3E-62 1.1E-66 503.9 29.1 265 418-755 3-268 (280)
3 KOG1577|consensus 100.0 9.1E-57 2E-61 464.2 25.0 263 2-280 20-288 (300)
4 COG0656 ARA1 Aldo/keto reducta 100.0 3.6E-55 7.8E-60 453.1 23.9 241 2-279 19-266 (280)
5 PRK11172 dkgB 2,5-diketo-D-glu 100.0 8E-52 1.7E-56 438.0 29.8 255 427-755 1-256 (267)
6 KOG1575|consensus 100.0 7.5E-52 1.6E-56 435.7 27.6 275 417-757 11-331 (336)
7 PRK11565 dkgA 2,5-diketo-D-glu 100.0 4.8E-51 1E-55 433.5 30.0 262 419-755 5-266 (275)
8 COG0667 Tas Predicted oxidored 100.0 3.4E-51 7.3E-56 440.6 27.3 267 418-752 1-310 (316)
9 TIGR01293 Kv_beta voltage-depe 100.0 5.2E-49 1.1E-53 426.9 28.1 264 420-749 1-316 (317)
10 PRK10625 tas putative aldo-ket 100.0 2.4E-48 5.3E-53 426.7 29.7 287 418-754 1-342 (346)
11 PRK09912 L-glyceraldehyde 3-ph 100.0 3.7E-48 8E-53 424.7 30.9 272 416-752 11-334 (346)
12 KOG1575|consensus 100.0 7.1E-48 1.5E-52 405.6 26.5 251 2-279 36-327 (336)
13 PRK10376 putative oxidoreducta 100.0 1.2E-46 2.7E-51 403.1 28.4 254 421-751 10-288 (290)
14 COG0667 Tas Predicted oxidored 100.0 8E-47 1.7E-51 406.7 26.7 241 8-278 31-310 (316)
15 PLN02587 L-galactose dehydroge 100.0 4E-46 8.7E-51 403.9 28.9 270 420-752 1-301 (314)
16 PRK11172 dkgB 2,5-diketo-D-glu 100.0 4.1E-46 8.8E-51 394.4 27.6 240 2-279 8-254 (267)
17 cd06660 Aldo_ket_red Aldo-keto 100.0 1.9E-45 4.1E-50 393.6 29.4 264 420-749 1-285 (285)
18 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.4E-44 3.1E-49 383.9 26.7 240 2-280 20-265 (275)
19 TIGR01293 Kv_beta voltage-depe 100.0 1.9E-44 4.1E-49 391.2 27.1 247 2-275 16-316 (317)
20 PF00248 Aldo_ket_red: Aldo/ke 100.0 2.4E-44 5.2E-49 384.7 25.8 255 431-750 1-282 (283)
21 COG4989 Predicted oxidoreducta 100.0 5.4E-45 1.2E-49 359.4 18.1 267 418-752 1-294 (298)
22 PRK09912 L-glyceraldehyde 3-ph 100.0 2.1E-43 4.6E-48 387.0 27.3 251 2-278 30-334 (346)
23 PRK10625 tas putative aldo-ket 100.0 4E-43 8.6E-48 385.5 26.8 261 2-277 18-339 (346)
24 PRK14863 bifunctional regulato 100.0 3.6E-43 7.9E-48 375.7 21.9 253 426-748 2-279 (292)
25 PF00248 Aldo_ket_red: Aldo/ke 100.0 3E-42 6.5E-47 368.5 22.2 243 6-276 13-282 (283)
26 PRK10376 putative oxidoreducta 100.0 1.5E-41 3.3E-46 363.8 26.3 232 8-277 38-288 (290)
27 PLN02587 L-galactose dehydroge 100.0 8.5E-41 1.8E-45 362.3 27.9 246 7-278 28-301 (314)
28 cd06660 Aldo_ket_red Aldo-keto 100.0 3.1E-40 6.7E-45 353.3 27.5 245 2-275 16-285 (285)
29 COG4989 Predicted oxidoreducta 100.0 1.4E-39 3.1E-44 321.0 18.4 245 5-277 26-293 (298)
30 PRK14863 bifunctional regulato 100.0 6.2E-39 1.3E-43 343.1 18.4 235 6-273 28-278 (292)
31 COG1453 Predicted oxidoreducta 100.0 7.6E-38 1.7E-42 325.9 20.0 265 418-754 1-288 (391)
32 KOG1576|consensus 100.0 9E-38 1.9E-42 310.0 18.7 280 417-760 21-332 (342)
33 KOG1576|consensus 100.0 5.6E-30 1.2E-34 254.6 19.4 232 8-266 52-310 (342)
34 COG1453 Predicted oxidoreducta 100.0 3.8E-30 8.1E-35 268.5 19.0 239 7-278 31-286 (391)
35 KOG3023|consensus 98.0 1.8E-05 4E-10 79.1 7.3 75 594-668 152-227 (285)
36 KOG3023|consensus 97.8 2.7E-05 5.9E-10 77.9 6.2 75 122-201 153-227 (285)
37 PF07021 MetW: Methionine bios 77.9 9.7 0.00021 38.1 8.0 156 14-207 5-172 (193)
38 PRK04452 acetyl-CoA decarbonyl 73.0 48 0.0011 36.1 12.4 137 82-258 85-227 (319)
39 PF07021 MetW: Methionine bios 72.4 23 0.0005 35.5 9.0 74 601-674 92-172 (193)
40 PRK07534 methionine synthase I 71.8 1.6E+02 0.0035 32.3 18.4 93 436-528 38-152 (336)
41 COG1748 LYS9 Saccharopine dehy 62.5 31 0.00068 38.6 8.5 78 9-99 78-157 (389)
42 TIGR00190 thiC thiamine biosyn 61.0 1.5E+02 0.0034 33.0 13.2 64 600-677 164-228 (423)
43 KOG0259|consensus 59.3 1.6E+02 0.0035 32.8 12.7 49 10-63 81-135 (447)
44 PRK13352 thiamine biosynthesis 56.9 2.1E+02 0.0045 32.2 13.3 64 601-678 168-232 (431)
45 PF00809 Pterin_bind: Pterin b 52.6 2E+02 0.0044 29.2 12.1 106 142-258 74-186 (210)
46 PRK10558 alpha-dehydro-beta-de 50.3 1.1E+02 0.0024 32.2 9.9 67 604-671 10-79 (256)
47 PRK07945 hypothetical protein; 49.7 3.9E+02 0.0084 29.3 20.6 196 10-258 111-333 (335)
48 cd01965 Nitrogenase_MoFe_beta_ 49.5 1.3E+02 0.0027 34.3 11.0 113 31-167 61-188 (428)
49 PRK13796 GTPase YqeH; Provisio 49.1 2.3E+02 0.0049 31.5 12.7 123 7-157 54-180 (365)
50 COG1140 NarY Nitrate reductase 48.4 12 0.00027 40.7 2.4 54 610-663 263-317 (513)
51 PRK08609 hypothetical protein; 48.3 3E+02 0.0065 32.7 14.1 186 11-237 350-553 (570)
52 COG2355 Zn-dependent dipeptida 47.2 1.4E+02 0.0031 32.3 10.2 147 120-273 103-299 (313)
53 COG1748 LYS9 Saccharopine dehy 46.4 78 0.0017 35.5 8.3 78 443-532 80-159 (389)
54 PLN02489 homocysteine S-methyl 46.4 4.4E+02 0.0095 29.0 17.5 43 486-528 130-188 (335)
55 cd03316 MR_like Mandelate race 45.4 4.5E+02 0.0097 28.8 14.7 151 8-201 139-298 (357)
56 COG0159 TrpA Tryptophan syntha 45.4 2.5E+02 0.0054 29.8 11.4 26 594-619 27-53 (265)
57 cd00739 DHPS DHPS subgroup of 45.1 2.1E+02 0.0045 30.2 11.0 65 600-669 64-128 (257)
58 TIGR00216 ispH_lytB (E)-4-hydr 44.4 87 0.0019 33.5 8.0 116 602-731 145-273 (280)
59 PF03102 NeuB: NeuB family; I 43.5 99 0.0022 32.3 8.1 121 5-156 51-188 (241)
60 PRK10128 2-keto-3-deoxy-L-rham 43.4 1.9E+02 0.0041 30.7 10.4 67 604-670 9-77 (267)
61 PRK07535 methyltetrahydrofolat 41.9 3.6E+02 0.0078 28.5 12.2 124 125-258 55-178 (261)
62 COG1140 NarY Nitrate reductase 41.9 12 0.00025 40.8 1.0 55 137-196 263-317 (513)
63 cd01974 Nitrogenase_MoFe_beta 41.7 2.1E+02 0.0046 32.6 11.3 116 30-166 64-192 (435)
64 PRK05414 urocanate hydratase; 41.5 2E+02 0.0043 33.2 10.4 116 15-159 117-254 (556)
65 PRK01045 ispH 4-hydroxy-3-meth 41.4 1.2E+02 0.0025 32.8 8.5 115 603-731 146-275 (298)
66 TIGR01228 hutU urocanate hydra 41.4 2E+02 0.0043 33.1 10.3 116 15-159 108-245 (545)
67 cd03319 L-Ala-DL-Glu_epimerase 40.3 5E+02 0.011 27.9 14.5 152 8-203 134-288 (316)
68 TIGR03239 GarL 2-dehydro-3-deo 40.0 2E+02 0.0044 30.1 9.9 67 604-671 3-72 (249)
69 COG0761 lytB 4-Hydroxy-3-methy 37.2 87 0.0019 33.4 6.5 123 122-257 140-277 (294)
70 TIGR00381 cdhD CO dehydrogenas 36.9 6.5E+02 0.014 28.2 16.7 166 72-286 128-309 (389)
71 COG2987 HutU Urocanate hydrata 36.7 2E+02 0.0043 32.6 9.3 89 50-166 162-260 (561)
72 PRK00164 moaA molybdenum cofac 35.5 6E+02 0.013 27.5 13.5 37 595-631 141-181 (331)
73 PRK13352 thiamine biosynthesis 35.4 5.6E+02 0.012 28.9 12.5 133 67-258 138-280 (431)
74 PRK13361 molybdenum cofactor b 35.4 4.4E+02 0.0095 28.7 12.1 71 440-523 46-120 (329)
75 PRK12360 4-hydroxy-3-methylbut 35.3 1.6E+02 0.0034 31.6 8.2 113 604-731 150-274 (281)
76 PRK06361 hypothetical protein; 34.4 4.9E+02 0.011 26.1 13.0 182 10-238 10-197 (212)
77 COG0761 lytB 4-Hydroxy-3-methy 33.6 2E+02 0.0043 30.8 8.4 123 596-732 141-278 (294)
78 TIGR02660 nifV_homocitr homoci 33.1 5.9E+02 0.013 28.3 12.8 64 601-665 52-130 (365)
79 cd01965 Nitrogenase_MoFe_beta_ 32.7 3.7E+02 0.008 30.5 11.4 65 463-530 61-126 (428)
80 PRK05692 hydroxymethylglutaryl 32.3 2.9E+02 0.0064 29.6 9.9 107 70-199 24-138 (287)
81 cd03319 L-Ala-DL-Glu_epimerase 31.5 6.8E+02 0.015 26.9 13.2 68 601-670 217-288 (316)
82 PF00356 LacI: Bacterial regul 31.3 39 0.00084 25.6 2.1 38 223-260 2-41 (46)
83 COG2987 HutU Urocanate hydrata 30.4 1E+02 0.0022 34.7 5.9 51 595-645 217-268 (561)
84 TIGR00190 thiC thiamine biosyn 30.1 7.2E+02 0.016 28.0 12.2 132 68-258 136-277 (423)
85 PRK08392 hypothetical protein; 29.8 6E+02 0.013 25.7 18.2 96 598-705 103-209 (215)
86 PRK04452 acetyl-CoA decarbonyl 29.5 2.6E+02 0.0057 30.5 8.9 52 616-670 129-184 (319)
87 COG0635 HemN Coproporphyrinoge 28.5 2.8E+02 0.006 31.5 9.3 68 429-527 148-227 (416)
88 PRK05571 ribose-5-phosphate is 28.3 4.6E+02 0.01 25.2 9.3 78 70-168 10-88 (148)
89 PF02401 LYTB: LytB protein; 28.2 93 0.002 33.3 5.1 107 611-731 155-274 (281)
90 COG0635 HemN Coproporphyrinoge 28.1 3.6E+02 0.0078 30.6 10.1 74 69-150 201-276 (416)
91 cd03174 DRE_TIM_metallolyase D 27.9 2.8E+02 0.0062 28.7 8.9 68 599-667 52-134 (265)
92 cd03466 Nitrogenase_NifN_2 Nit 27.9 4.4E+02 0.0096 29.9 11.0 112 31-166 64-186 (429)
93 PRK05414 urocanate hydratase; 27.9 1.6E+02 0.0036 33.8 7.1 50 596-645 218-268 (556)
94 PF01175 Urocanase: Urocanase; 27.7 2.4E+02 0.0053 32.5 8.3 125 15-168 107-254 (546)
95 PRK13796 GTPase YqeH; Provisio 27.6 6.7E+02 0.014 27.8 12.0 36 596-631 146-181 (365)
96 TIGR01278 DPOR_BchB light-inde 27.2 3.4E+02 0.0074 31.7 10.0 60 32-99 66-125 (511)
97 cd03316 MR_like Mandelate race 27.1 8.5E+02 0.018 26.6 14.4 66 601-668 229-298 (357)
98 COG0621 MiaB 2-methylthioadeni 27.0 9.3E+02 0.02 27.6 13.0 238 6-257 13-318 (437)
99 TIGR01228 hutU urocanate hydra 26.9 1.7E+02 0.0036 33.6 6.9 50 596-645 209-259 (545)
100 PF11242 DUF2774: Protein of u 26.3 80 0.0017 25.5 3.0 22 690-711 15-36 (63)
101 cd07944 DRE_TIM_HOA_like 4-hyd 26.0 5.4E+02 0.012 27.2 10.5 164 65-260 13-176 (266)
102 TIGR02311 HpaI 2,4-dihydroxyhe 25.2 5.3E+02 0.012 26.9 10.1 65 604-669 3-70 (249)
103 PRK07534 methionine synthase I 25.2 9.4E+02 0.02 26.4 21.0 119 5-146 39-178 (336)
104 cd00423 Pterin_binding Pterin 25.1 3.9E+02 0.0084 28.0 9.2 68 599-671 63-130 (258)
105 PRK13602 putative ribosomal pr 24.8 2E+02 0.0044 24.6 5.7 58 604-668 3-60 (82)
106 cd03174 DRE_TIM_metallolyase D 24.2 4.5E+02 0.0098 27.1 9.6 110 70-201 17-135 (265)
107 TIGR01496 DHPS dihydropteroate 24.2 8.5E+02 0.018 25.6 11.7 62 600-668 63-125 (257)
108 PRK05588 histidinol-phosphatas 23.7 6.3E+02 0.014 26.2 10.5 80 9-98 15-102 (255)
109 PRK07535 methyltetrahydrofolat 23.2 5.6E+02 0.012 27.0 9.9 67 600-668 57-123 (261)
110 cd01821 Rhamnogalacturan_acety 23.1 5.4E+02 0.012 25.2 9.5 99 604-702 27-149 (198)
111 COG2069 CdhD CO dehydrogenase/ 22.7 9.8E+02 0.021 25.8 11.6 78 593-672 180-262 (403)
112 cd00423 Pterin_binding Pterin 22.5 9E+02 0.019 25.3 14.8 104 125-241 62-173 (258)
113 COG2069 CdhD CO dehydrogenase/ 22.4 9.9E+02 0.022 25.7 11.1 78 120-205 180-262 (403)
114 PLN02746 hydroxymethylglutaryl 22.1 7.8E+02 0.017 27.2 11.0 158 75-260 70-235 (347)
115 PF01175 Urocanase: Urocanase; 21.9 2.4E+02 0.0051 32.6 6.9 50 596-645 208-258 (546)
116 TIGR01928 menC_lowGC/arch o-su 21.3 1.1E+03 0.023 25.6 14.2 153 8-205 132-285 (324)
117 PRK00087 4-hydroxy-3-methylbut 20.6 2.9E+02 0.0063 33.3 8.0 113 604-730 147-270 (647)
118 PRK13361 molybdenum cofactor b 20.5 8E+02 0.017 26.6 10.8 106 7-139 45-154 (329)
119 cd01973 Nitrogenase_VFe_beta_l 20.4 1.3E+03 0.029 26.4 14.7 178 457-709 60-287 (454)
120 PLN02444 HMP-P synthase 20.2 1.4E+03 0.031 26.9 12.5 53 614-678 334-387 (642)
No 1
>KOG1577|consensus
Probab=100.00 E-value=8e-63 Score=509.18 Aligned_cols=284 Identities=60% Similarity=1.027 Sum_probs=265.9
Q ss_pred eEEccCCcccCccceeccccCcchHHHHHHHHHHcCCCeEecCCCCCCHHHHHHHHHhhhhcCCCCCCCeEEEecCCCCC
Q psy15065 420 FVTFNNGLKFPIFGLGTWKSKKGEVKQAVGYAIDIGYRHIDCAHVYENEDEVGDAIAQKLKDNVVKREDLYITSKLWNTF 499 (773)
Q Consensus 420 ~~~L~tgl~vs~lglGt~~~~~~~~~~~l~~Ale~Gin~fDTA~~YgsE~~lG~~l~~~~~~~~~~R~~v~I~TK~~~~~ 499 (773)
+.+|++|.+||.||||||+.+.+++.++|..|++.||||||||..||||+.+|++|++++...+++|+++||+||+|+..
T Consensus 6 ~~~Ln~G~~mP~iGlGTw~~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediFiTSKlw~~~ 85 (300)
T KOG1577|consen 6 TVKLNNGFKMPIIGLGTWQSPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIFITSKLWPTD 85 (300)
T ss_pred eEeccCCCccceeeeEecccChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCcchhhheeeeccCccc
Confidence 67899999999999999998889999999999999999999999999999999999999988999999999999999999
Q ss_pred CChhhHHHHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhccccccccCCCCccchhhhhhcccCCCCCCC
Q psy15065 500 HRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHWPQAYKVSNDFPCAVTREMAFRLSPHIEGD 579 (773)
Q Consensus 500 ~~~~~i~~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (773)
+.++.++.++++||+.||+||+|||++|||...+
T Consensus 86 ~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k---------------------------------------------- 119 (300)
T KOG1577|consen 86 HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFK---------------------------------------------- 119 (300)
T ss_pred cChhhHHHHHHHHHHHhChhhhheeeEecccccC----------------------------------------------
Confidence 9999999999999999999999999999996432
Q ss_pred CCCCCCcCCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCCceeeeeccCCcCChHHHHHHHHh
Q psy15065 580 TLFPADANGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQHKLKQWCEE 659 (773)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~ 659 (773)
...|.++.+...+.+.++.++|++||+++++|++|+||||||+..+|++++..+.++|++||+++||+.++.+++++|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~ 199 (300)
T KOG1577|consen 120 DSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKS 199 (300)
T ss_pred CCCCcccccccccccchHHHHHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhh
Confidence 13344445555666778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEecCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHHHHhCCcEEeeCCCCHHHHHHhhcccccccC
Q psy15065 660 RQILITAYSPLGSPDRPWAKPGDPSLLDDPKIKEIAAKYNKTSAQILIKYQVQQGNICIPKSVTPSRIEENAQIFDFELA 739 (773)
Q Consensus 660 ~gI~via~spL~~g~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~i~G~~~~~~l~enl~a~~~~Lt 739 (773)
+||.|.||||||++.. .. .++.++.+.+||+|||+|+|||+|||++++|.++||+++|++|++||++++++.||
T Consensus 200 ~~I~v~AYSpLg~~~~-----~~-~ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt 273 (300)
T KOG1577|consen 200 KGIVVTAYSPLGSPGR-----GS-DLLEDPVLKEIAKKYNKTPAQILLRWALQRGVSVIPKSSNPERIKENFKVFDFELT 273 (300)
T ss_pred CCcEEEEecCCCCCCC-----cc-ccccCHHHHHHHHHhCCCHHHHHHHHHHhCCcEEEeccCCHHHHHHHHhhccccCC
Confidence 9999999999998864 11 68889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccccCCcc
Q psy15065 740 PEDIQTIDSFNRNHRF 755 (773)
Q Consensus 740 ~e~~~~I~~l~~~~r~ 755 (773)
+|||+.|+++..+.|.
T Consensus 274 ~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 274 EEDMKKLDSLNSNERY 289 (300)
T ss_pred HHHHHHHhhcccccee
Confidence 9999999999999885
No 2
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=5.3e-62 Score=503.92 Aligned_cols=265 Identities=46% Similarity=0.813 Sum_probs=248.6
Q ss_pred cCeEEccCCcccCccceeccccCcch-HHHHHHHHHHcCCCeEecCCCCCCHHHHHHHHHhhhhcCCCCCCCeEEEecCC
Q psy15065 418 FPFVTFNNGLKFPIFGLGTWKSKKGE-VKQAVGYAIDIGYRHIDCAHVYENEDEVGDAIAQKLKDNVVKREDLYITSKLW 496 (773)
Q Consensus 418 ~~~~~L~tgl~vs~lglGt~~~~~~~-~~~~l~~Ale~Gin~fDTA~~YgsE~~lG~~l~~~~~~~~~~R~~v~I~TK~~ 496 (773)
+.+.+|++|.+||.||||||+++.+. +.++|..|+++|+|+||||.+||||+.+|++|++ ++++|+++||+||+|
T Consensus 3 ~~~~~l~~g~~iP~iGlGt~~~~~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~----s~v~ReelFittKvw 78 (280)
T COG0656 3 KTKVTLNNGVEIPAIGLGTWQIGDDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKE----SGVPREELFITTKVW 78 (280)
T ss_pred CceeecCCCCcccCcceEeeecCCchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHh----cCCCHHHeEEEeecC
Confidence 56778899999999999999998877 9999999999999999999999999999999998 789999999999999
Q ss_pred CCCCChhhHHHHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhccccccccCCCCccchhhhhhcccCCCC
Q psy15065 497 NTFHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHWPQAYKVSNDFPCAVTREMAFRLSPHI 576 (773)
Q Consensus 497 ~~~~~~~~i~~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (773)
+.+.+++.+.+++++||++||+||||||+||||.+..
T Consensus 79 ~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~------------------------------------------- 115 (280)
T COG0656 79 PSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNK------------------------------------------- 115 (280)
T ss_pred CccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCcc-------------------------------------------
Confidence 9999999999999999999999999999999995310
Q ss_pred CCCCCCCCCcCCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCCceeeeeccCCcCChHHHHHH
Q psy15065 577 EGDTLFPADANGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQHKLKQW 656 (773)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~ 656 (773)
...+.|+|++||+++++||||+||||||+.++++++++..++.|++||++|||+.++.+++++
T Consensus 116 -----------------~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el~~~ 178 (280)
T COG0656 116 -----------------YVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPF 178 (280)
T ss_pred -----------------CccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHHHHH
Confidence 112679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEecCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHHHHhCCcEEeeCCCCHHHHHHhhccccc
Q psy15065 657 CEERQILITAYSPLGSPDRPWAKPGDPSLLDDPKIKEIAAKYNKTSAQILIKYQVQQGNICIPKSVTPSRIEENAQIFDF 736 (773)
Q Consensus 657 ~~~~gI~via~spL~~g~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~i~G~~~~~~l~enl~a~~~ 736 (773)
|+++||.++|||||+.|.. ++.++.+.+||++||.|+||++|+|++++|.++||++++++|+++|++++++
T Consensus 179 ~~~~gI~v~AysPL~~g~~---------l~~~~~l~~Ia~k~g~t~AQv~L~W~i~~gv~~Ipks~~~~ri~eN~~~~~f 249 (280)
T COG0656 179 CQRHGIAVEAYSPLAKGGK---------LLDNPVLAEIAKKYGKTPAQVALRWHIQRGVIVIPKSTTPERIRENLAAFDF 249 (280)
T ss_pred HHHcCCEEEEECCcccccc---------cccChHHHHHHHHhCCCHHHHHHHHHHhCCcEEecCCCCHHHHHHHHhhhcC
Confidence 9999999999999997531 6778899999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHccccCCcc
Q psy15065 737 ELAPEDIQTIDSFNRNHRF 755 (773)
Q Consensus 737 ~Lt~e~~~~I~~l~~~~r~ 755 (773)
.||+|||++|+++....+.
T Consensus 250 ~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 250 ELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred CCCHHHHHHHHhhccccCc
Confidence 9999999999999997644
No 3
>KOG1577|consensus
Probab=100.00 E-value=9.1e-57 Score=464.24 Aligned_cols=263 Identities=53% Similarity=0.885 Sum_probs=239.4
Q ss_pred cccccCCHHHHHHHHHHHHHcCCCEEEcCCCCCCHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHHH
Q psy15065 2 YIMFQSLEREVYEAVCHAIDLGYRHFDCAYYYQNEGQIGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQES 81 (773)
Q Consensus 2 ~g~~~~~~~~a~~~l~~Al~~Gin~iDTA~~Yg~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~S 81 (773)
+|||+.+++++.++|+.|+++||||||||..||||..+|++|++.+++++++|+++||+||+|+..+ .++.++.+|+.|
T Consensus 20 lGTw~~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediFiTSKlw~~~~-~~~~v~~al~~s 98 (300)
T KOG1577|consen 20 LGTWQSPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIFITSKLWPTDH-APELVEKALEKS 98 (300)
T ss_pred eEecccChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCcchhhheeeeccCcccc-ChhhHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999998864 789999999999
Q ss_pred HHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCHHHHHHHHHhcC
Q psy15065 82 LDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVAR 161 (773)
Q Consensus 82 L~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~~~~~a~ 161 (773)
|++||+||||||++|||..+.+ ..|..++++... ...++.++|++|++++++||||+||||||+..+|++++..++
T Consensus 99 Lk~L~ldYvDLyLiH~P~~~k~---~~~~~~~~~~~~-~~~~~~~tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~k 174 (300)
T KOG1577|consen 99 LKKLQLDYVDLYLIHWPVAFKD---SFPKDENGKVNY-DDVDRIETWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAK 174 (300)
T ss_pred HHHhChhhhheeeEecccccCC---CCCccccccccc-ccchHHHHHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCC
Confidence 9999999999999999987743 333333344333 334899999999999999999999999999999999999999
Q ss_pred CCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHhHhC
Q psy15065 162 IKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDIASRYDKTPAQIQLGN 241 (773)
Q Consensus 162 ~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~~l~~iA~~~g~s~aqvAL~~ 241 (773)
++|++|| +|.||++++.+++++|+++||.+.||||||++.. . ..++.++.+.+||++||+|||||+|+|
T Consensus 175 i~P~vnQ------vE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~---~--~~ll~~~~l~~iA~K~~kt~aQIlLrw 243 (300)
T KOG1577|consen 175 IKPAVNQ------VECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR---G--SDLLEDPVLKEIAKKYNKTPAQILLRW 243 (300)
T ss_pred CCCccce------eeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC---c--cccccCHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999 7889999999999999999999999999998764 1 157788999999999999999999976
Q ss_pred c------ccCCCCCHHHHHHHhcccCCCCCHHHHHHHHccccCCC
Q psy15065 242 I------TVPKSVTKSRLEENRDIFDFELSQEDMDTLDGLDANGR 280 (773)
Q Consensus 242 v------vi~g~~~~~ql~enl~a~~~~Lt~e~~~~L~~~~~~~~ 280 (773)
. |||++++++||+||+++++|+||+||++.|+++....|
T Consensus 244 ~~q~g~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 244 ALQRGVSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNER 288 (300)
T ss_pred HHhCCcEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhccccce
Confidence 5 89999999999999999999999999999998877654
No 4
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=3.6e-55 Score=453.10 Aligned_cols=241 Identities=45% Similarity=0.753 Sum_probs=220.1
Q ss_pred cccccCCHHH-HHHHHHHHHHcCCCEEEcCCCCCCHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHH
Q psy15065 2 YIMFQSLERE-VYEAVCHAIDLGYRHFDCAYYYQNEGQIGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQE 80 (773)
Q Consensus 2 ~g~~~~~~~~-a~~~l~~Al~~Gin~iDTA~~Yg~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~ 80 (773)
+|||+...++ +.++|.+|++.|||+||||.+||||+.+|++|++ ++++|+++||+||+|+... +.+.+.+++++
T Consensus 19 lGt~~~~~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~----s~v~ReelFittKvw~~~~-~~~~~~~a~e~ 93 (280)
T COG0656 19 LGTWQIGDDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKE----SGVPREELFITTKVWPSDL-GYDETLKALEA 93 (280)
T ss_pred eEeeecCCchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHh----cCCCHHHeEEEeecCCccC-CcchHHHHHHH
Confidence 5999998877 9999999999999999999999999999999998 4689999999999998865 78899999999
Q ss_pred HHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCHHHHHHHHHhc
Q psy15065 81 SLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVA 160 (773)
Q Consensus 81 SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~~~~~a 160 (773)
||+|||+||||||+||||.+. ....++|+|++|++|+++||||+||||||+..+++++++.+
T Consensus 94 Sl~rLg~dyvDLyLiHwP~~~------------------~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~ 155 (280)
T COG0656 94 SLKRLGLDYVDLYLIHWPVPN------------------KYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLA 155 (280)
T ss_pred HHHHhCCCceeEEEECCCCCc------------------cCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhc
Confidence 999999999999999999431 11128999999999999999999999999999999999999
Q ss_pred CCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHhHh
Q psy15065 161 RIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDIASRYDKTPAQIQLG 240 (773)
Q Consensus 161 ~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~~l~~iA~~~g~s~aqvAL~ 240 (773)
++.|++||++| ||+..+.+++++|+++||.++|||||++|.. ++.++.+.+||++||.|+|||+|+
T Consensus 156 ~~~p~~NQIe~------hp~~~q~el~~~~~~~gI~v~AysPL~~g~~--------l~~~~~l~~Ia~k~g~t~AQv~L~ 221 (280)
T COG0656 156 KVKPAVNQIEY------HPYLRQPELLPFCQRHGIAVEAYSPLAKGGK--------LLDNPVLAEIAKKYGKTPAQVALR 221 (280)
T ss_pred CCCCceEEEEe------ccCCCcHHHHHHHHHcCCEEEEECCcccccc--------cccChHHHHHHHHhCCCHHHHHHH
Confidence 99999999555 5666688899999999999999999997431 667889999999999999999998
Q ss_pred Cc------ccCCCCCHHHHHHHhcccCCCCCHHHHHHHHccccCC
Q psy15065 241 NI------TVPKSVTKSRLEENRDIFDFELSQEDMDTLDGLDANG 279 (773)
Q Consensus 241 ~v------vi~g~~~~~ql~enl~a~~~~Lt~e~~~~L~~~~~~~ 279 (773)
|+ +||++++++|++||++++++.||+|||++|+++....
T Consensus 222 W~i~~gv~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~ 266 (280)
T COG0656 222 WHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGY 266 (280)
T ss_pred HHHhCCcEEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhcccc
Confidence 75 8999999999999999999999999999999998864
No 5
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=8e-52 Score=437.98 Aligned_cols=255 Identities=36% Similarity=0.617 Sum_probs=231.8
Q ss_pred cccCccceeccccCcchHHHHHHHHHHcCCCeEecCCCCCCHHHHHHHHHhhhhcCCCCCCCeEEEecCCCCCCChhhHH
Q psy15065 427 LKFPIFGLGTWKSKKGEVKQAVGYAIDIGYRHIDCAHVYENEDEVGDAIAQKLKDNVVKREDLYITSKLWNTFHRPDLVK 506 (773)
Q Consensus 427 l~vs~lglGt~~~~~~~~~~~l~~Ale~Gin~fDTA~~YgsE~~lG~~l~~~~~~~~~~R~~v~I~TK~~~~~~~~~~i~ 506 (773)
.+||.||||||+++.+++.++++.|+++|||+||||+.||+|..+|++|++ .+.+|+++||+||++....+++.++
T Consensus 1 ~~vs~lglGt~~~~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~----~~~~R~~v~i~TK~~~~~~~~~~~~ 76 (267)
T PRK11172 1 MSIPAFGLGTFRLKDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAE----SGVPRDELFITTKIWIDNLAKDKLI 76 (267)
T ss_pred CCCCCEeeEccccChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHH----cCCChhHeEEEEEeCCCCCCHHHHH
Confidence 369999999999988899999999999999999999999999999999985 3467999999999987677889999
Q ss_pred HHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhccccccccCCCCccchhhhhhcccCCCCCCCCCCCCCc
Q psy15065 507 PALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHWPQAYKVSNDFPCAVTREMAFRLSPHIEGDTLFPADA 586 (773)
Q Consensus 507 ~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (773)
+++++||+|||+||||+|++|||++.
T Consensus 77 ~~~~~SL~rL~~d~iDl~~lH~~~~~------------------------------------------------------ 102 (267)
T PRK11172 77 PSLKESLQKLRTDYVDLTLIHWPSPN------------------------------------------------------ 102 (267)
T ss_pred HHHHHHHHHhCCCceEEEEeCCCCCC------------------------------------------------------
Confidence 99999999999999999999998521
Q ss_pred CCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCC-CceeeeeccCCcCChHHHHHHHHhcCceEE
Q psy15065 587 NGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTI-KPVVNQVECHPYLTQHKLKQWCEERQILIT 665 (773)
Q Consensus 587 ~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~-~~~~~Q~~~~~~~~~~~l~~~~~~~gI~vi 665 (773)
...+..++|++|++|+++||||+||||||+.++++++++.++. ++.++|++||++.++.+++++|+++||+++
T Consensus 103 ------~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~ll~~~~~~gi~v~ 176 (267)
T PRK11172 103 ------DEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIATNQIELSPYLQNRKVVAFAKEHGIHVT 176 (267)
T ss_pred ------CCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCCCeEEeeecCCCCCcHHHHHHHHHCCCEEE
Confidence 0134568999999999999999999999999999999886654 688999999999998899999999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHHHHhCCcEEeeCCCCHHHHHHhhcccccccCHHHHHH
Q psy15065 666 AYSPLGSPDRPWAKPGDPSLLDDPKIKEIAAKYNKTSAQILIKYQVQQGNICIPKSVTPSRIEENAQIFDFELAPEDIQT 745 (773)
Q Consensus 666 a~spL~~g~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~i~G~~~~~~l~enl~a~~~~Lt~e~~~~ 745 (773)
+||||++|. +...+.+.++|+++|+|++|+||+|+++++.++|||+++++|+++|+++++++||++++++
T Consensus 177 a~spl~~G~----------~~~~~~l~~~a~~~~~s~aqval~w~l~~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~ 246 (267)
T PRK11172 177 SYMTLAYGK----------VLKDPVIARIAAKHNATPAQVILAWAMQLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAA 246 (267)
T ss_pred EECCCCCCc----------ccCCHHHHHHHHHhCCCHHHHHHHHHHhCCCEeecCCCCHHHHHHHHhhcCCCcCHHHHHH
Confidence 999999884 2334689999999999999999999999998899999999999999999999999999999
Q ss_pred HHccccCCcc
Q psy15065 746 IDSFNRNHRF 755 (773)
Q Consensus 746 I~~l~~~~r~ 755 (773)
|+++.++.+.
T Consensus 247 i~~~~~~~~~ 256 (267)
T PRK11172 247 IAALDRNGRL 256 (267)
T ss_pred HhhhccCCcc
Confidence 9999877654
No 6
>KOG1575|consensus
Probab=100.00 E-value=7.5e-52 Score=435.65 Aligned_cols=275 Identities=23% Similarity=0.298 Sum_probs=240.5
Q ss_pred ccCeEEc-cCCcccCccceecc-------ccCcchHHHHHHHHHHcCCCeEecCCCCC---CHHHHHHHHHhhhhcCCCC
Q psy15065 417 NFPFVTF-NNGLKFPIFGLGTW-------KSKKGEVKQAVGYAIDIGYRHIDCAHVYE---NEDEVGDAIAQKLKDNVVK 485 (773)
Q Consensus 417 ~~~~~~L-~tgl~vs~lglGt~-------~~~~~~~~~~l~~Ale~Gin~fDTA~~Yg---sE~~lG~~l~~~~~~~~~~ 485 (773)
.|+|+++ ++|++||++||||| +.+++++.+++++|+|+|+||||||++|| ||..+|++|++ ...+
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~----~~~~ 86 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKS----RGWR 86 (336)
T ss_pred cceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHh----cCCc
Confidence 5789999 88999999999993 23578999999999999999999999998 69999999998 4578
Q ss_pred CCCeEEEecCCCC-------CCChhhHHHHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhccccccccCC
Q psy15065 486 REDLYITSKLWNT-------FHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHWPQAYKVSN 558 (773)
Q Consensus 486 R~~v~I~TK~~~~-------~~~~~~i~~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~p~~~~~~~ 558 (773)
|++|||+||++.. ..+..++...++.||+|||+|||||||+||+|+
T Consensus 87 R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~--------------------------- 139 (336)
T KOG1575|consen 87 RDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDP--------------------------- 139 (336)
T ss_pred CCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCC---------------------------
Confidence 9999999999532 356788999999999999999999999999863
Q ss_pred CCccchhhhhhcccCCCCCCCCCCCCCcCCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCCce
Q psy15065 559 DFPCAVTREMAFRLSPHIEGDTLFPADANGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPV 638 (773)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~ 638 (773)
..+++|++++|.+++++||||+||+|+++++++.++...+.++++
T Consensus 140 -----------------------------------~~piee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~ 184 (336)
T KOG1575|consen 140 -----------------------------------MVPIEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIV 184 (336)
T ss_pred -----------------------------------CCCHHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCce
Confidence 467889999999999999999999999999999999999989999
Q ss_pred eeeeccCCcCCh---HHHHHHHHhcCceEEEecCCCCCCCCCCCCC-------CC--------CCC--------CcHHHH
Q psy15065 639 VNQVECHPYLTQ---HKLKQWCEERQILITAYSPLGSPDRPWAKPG-------DP--------SLL--------DDPKIK 692 (773)
Q Consensus 639 ~~Q~~~~~~~~~---~~l~~~~~~~gI~via~spL~~g~~~~~~~~-------~~--------~~~--------~~~~l~ 692 (773)
++|++||++.++ .+++++|++.||++++||||++|.++..... .. ... ....+.
T Consensus 185 s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (336)
T KOG1575|consen 185 AVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALS 264 (336)
T ss_pred EeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcccccccccccccccccccccccchhhhHHHHHHHHH
Confidence 999999999985 4699999999999999999999876543211 00 000 014578
Q ss_pred HHHHHhCCCHHHHHHHHHHhCCc--EEeeCCCCHHHHHHhhcccccccCHHHHHHHHccccCCcccc
Q psy15065 693 EIAAKYNKTSAQILIKYQVQQGN--ICIPKSVTPSRIEENAQIFDFELAPEDIQTIDSFNRNHRFLL 757 (773)
Q Consensus 693 ~ia~~~g~s~aqlaL~w~l~~~~--v~i~G~~~~~~l~enl~a~~~~Lt~e~~~~I~~l~~~~r~~~ 757 (773)
+||+++|+|++|+||+|+++++. +||||+++++||+||++|+.+.||++++.+|++.........
T Consensus 265 ~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~~ 331 (336)
T KOG1575|consen 265 KIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEIIDKILGFG 331 (336)
T ss_pred HHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhhccccCcC
Confidence 99999999999999999999985 469999999999999999999999999999999888765543
No 7
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=4.8e-51 Score=433.46 Aligned_cols=262 Identities=40% Similarity=0.801 Sum_probs=237.7
Q ss_pred CeEEccCCcccCccceeccccCcchHHHHHHHHHHcCCCeEecCCCCCCHHHHHHHHHhhhhcCCCCCCCeEEEecCCCC
Q psy15065 419 PFVTFNNGLKFPIFGLGTWKSKKGEVKQAVGYAIDIGYRHIDCAHVYENEDEVGDAIAQKLKDNVVKREDLYITSKLWNT 498 (773)
Q Consensus 419 ~~~~L~tgl~vs~lglGt~~~~~~~~~~~l~~Ale~Gin~fDTA~~YgsE~~lG~~l~~~~~~~~~~R~~v~I~TK~~~~ 498 (773)
++..|++|++||+||||||+++.+++.++|++|+++|||+||||+.||+|+.+|++|++ .+.+|++++|+||++.
T Consensus 5 ~~~~l~~g~~v~~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~----~~~~R~~~~i~tK~~~- 79 (275)
T PRK11565 5 TVIKLQDGNVMPQLGLGVWQASNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKE----ASVAREELFITTKLWN- 79 (275)
T ss_pred ceEEcCCCCccCCcceECccCCHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHH----cCCCHHHEEEEEEecC-
Confidence 45668999999999999999998999999999999999999999999999999999986 3457999999999964
Q ss_pred CCChhhHHHHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhccccccccCCCCccchhhhhhcccCCCCCC
Q psy15065 499 FHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHWPQAYKVSNDFPCAVTREMAFRLSPHIEG 578 (773)
Q Consensus 499 ~~~~~~i~~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (773)
.+++.+++++++||++||+||||+|++|||+..
T Consensus 80 -~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~---------------------------------------------- 112 (275)
T PRK11565 80 -DDHKRPREALEESLKKLQLDYVDLYLMHWPVPA---------------------------------------------- 112 (275)
T ss_pred -cchHHHHHHHHHHHHHhCCCceEEEEecCCCCC----------------------------------------------
Confidence 356899999999999999999999999998521
Q ss_pred CCCCCCCcCCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCCceeeeeccCCcCChHHHHHHHH
Q psy15065 579 DTLFPADANGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQHKLKQWCE 658 (773)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~ 658 (773)
...+.++|++|++|+++||||+||||||+++++++++..++++|+++|++++++.++.+++++|+
T Consensus 113 ---------------~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~ 177 (275)
T PRK11565 113 ---------------IDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNA 177 (275)
T ss_pred ---------------cCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccchHHHHHHHH
Confidence 12346999999999999999999999999999999998877889999999999998889999999
Q ss_pred hcCceEEEecCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHHHHhCCcEEeeCCCCHHHHHHhhccccccc
Q psy15065 659 ERQILITAYSPLGSPDRPWAKPGDPSLLDDPKIKEIAAKYNKTSAQILIKYQVQQGNICIPKSVTPSRIEENAQIFDFEL 738 (773)
Q Consensus 659 ~~gI~via~spL~~g~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v~i~G~~~~~~l~enl~a~~~~L 738 (773)
++||++++||||++|.. ..+..+.+.++|+++|+|++|+||+|+++++.++|||+++++|+++|+++++++|
T Consensus 178 ~~~i~~~a~spl~~G~~--------~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~~~I~g~~~~~~i~~n~~a~~~~L 249 (275)
T PRK11565 178 THKIQTESWSPLAQGGK--------GVFDQKVIRDLADKYGKTPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRL 249 (275)
T ss_pred HCCCEEEEEccCCCCCc--------ccccCHHHHHHHHHhCCCHHHHHHHHHHcCCCEeeCCCCCHHHHHHHHhccCCCc
Confidence 99999999999987631 1234578999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHccccCCcc
Q psy15065 739 APEDIQTIDSFNRNHRF 755 (773)
Q Consensus 739 t~e~~~~I~~l~~~~r~ 755 (773)
+++++++|+++..++|+
T Consensus 250 s~~~~~~i~~~~~~~~~ 266 (275)
T PRK11565 250 DKDELGEIAKLDQGKRL 266 (275)
T ss_pred CHHHHHHHHhhcccCCc
Confidence 99999999999987765
No 8
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=3.4e-51 Score=440.62 Aligned_cols=267 Identities=26% Similarity=0.396 Sum_probs=231.6
Q ss_pred cCeEEc-cCCcccCccceeccccCc-------chHHHHHHHHHHcCCCeEecCCCCC---CHHHHHHHHHhhhhcCCCCC
Q psy15065 418 FPFVTF-NNGLKFPIFGLGTWKSKK-------GEVKQAVGYAIDIGYRHIDCAHVYE---NEDEVGDAIAQKLKDNVVKR 486 (773)
Q Consensus 418 ~~~~~L-~tgl~vs~lglGt~~~~~-------~~~~~~l~~Ale~Gin~fDTA~~Yg---sE~~lG~~l~~~~~~~~~~R 486 (773)
|+|++| ++|++||+||||||.++. +++.++|++|+|+||||||||++|| ||++||++|++ .+. |
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~----~~~-R 75 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKE----RGR-R 75 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhc----cCC-C
Confidence 678999 899999999999998863 2455699999999999999999998 79999999997 222 9
Q ss_pred CCeEEEecCCCC----------CCChhhHHHHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhcccccccc
Q psy15065 487 EDLYITSKLWNT----------FHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHWPQAYKV 556 (773)
Q Consensus 487 ~~v~I~TK~~~~----------~~~~~~i~~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~p~~~~~ 556 (773)
++++|+||++.. +.++++|+++++.||+|||||||||||+|||+.
T Consensus 76 d~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~------------------------- 130 (316)
T COG0667 76 DKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDP------------------------- 130 (316)
T ss_pred CeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCC-------------------------
Confidence 999999999543 357899999999999999999999999999963
Q ss_pred CCCCccchhhhhhcccCCCCCCCCCCCCCcCCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCC
Q psy15065 557 SNDFPCAVTREMAFRLSPHIEGDTLFPADANGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIK 636 (773)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~ 636 (773)
+.+..|++++|.+|+++||||+||+||++.+++.++.+.+ .+
T Consensus 131 -------------------------------------~~p~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-~~ 172 (316)
T COG0667 131 -------------------------------------ETPIEETLEALDELVREGKIRYIGVSNYSAEQIAEALAVA-AP 172 (316)
T ss_pred -------------------------------------CCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhc-CC
Confidence 3456799999999999999999999999999999999987 67
Q ss_pred ceeeeeccCCcCCh--HHHHHHHHhcCceEEEecCCCCCCCCCCCCC---CC-----CCC----------CcHHHHHHHH
Q psy15065 637 PVVNQVECHPYLTQ--HKLKQWCEERQILITAYSPLGSPDRPWAKPG---DP-----SLL----------DDPKIKEIAA 696 (773)
Q Consensus 637 ~~~~Q~~~~~~~~~--~~l~~~~~~~gI~via~spL~~g~~~~~~~~---~~-----~~~----------~~~~l~~ia~ 696 (773)
++++|.+||++.++ .+++++|+++||++++||||++|.++..... .. ... ....+.++|+
T Consensus 173 ~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~ 252 (316)
T COG0667 173 IDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPGPEGSRASELPRFQRELTERGLAILRALEELAK 252 (316)
T ss_pred ceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCCcchhhccccccchhhhhHHHHHHHHHHHHHHH
Confidence 89999999999963 4699999999999999999999976544322 00 010 0135889999
Q ss_pred HhCCCHHHHHHHHHHhCCcE--EeeCCCCHHHHHHhhcccccccCHHHHHHHHccccC
Q psy15065 697 KYNKTSAQILIKYQVQQGNI--CIPKSVTPSRIEENAQIFDFELAPEDIQTIDSFNRN 752 (773)
Q Consensus 697 ~~g~s~aqlaL~w~l~~~~v--~i~G~~~~~~l~enl~a~~~~Lt~e~~~~I~~l~~~ 752 (773)
++|+|++|+||+|++++|.+ +|||+++++||++|++++++.|+++++++|++....
T Consensus 253 ~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 253 ELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred HhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 99999999999999999864 699999999999999999999999999999987654
No 9
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=5.2e-49 Score=426.93 Aligned_cols=264 Identities=21% Similarity=0.343 Sum_probs=223.9
Q ss_pred eEEc-cCCcccCccceeccc-----cCcchHHHHHHHHHHcCCCeEecCCCCC---CHHHHHHHHHhhhhcCCCCCCCeE
Q psy15065 420 FVTF-NNGLKFPIFGLGTWK-----SKKGEVKQAVGYAIDIGYRHIDCAHVYE---NEDEVGDAIAQKLKDNVVKREDLY 490 (773)
Q Consensus 420 ~~~L-~tgl~vs~lglGt~~-----~~~~~~~~~l~~Ale~Gin~fDTA~~Yg---sE~~lG~~l~~~~~~~~~~R~~v~ 490 (773)
||+| ++|++||+||||||+ .+.+++.++|+.|+++|||+||||++|| ||+.+|++|++ ...+|++++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~----~~~~R~~~~ 76 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKK----KGWRRSSYV 76 (317)
T ss_pred CcccCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHh----cCCCcccEE
Confidence 4667 889999999999996 3557799999999999999999999997 79999999985 234699999
Q ss_pred EEecCCCC-------CCChhhHHHHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhccccccccCCCCccc
Q psy15065 491 ITSKLWNT-------FHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHWPQAYKVSNDFPCA 563 (773)
Q Consensus 491 I~TK~~~~-------~~~~~~i~~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~p~~~~~~~~~~~~ 563 (773)
|+||++.. ..+++.+++++++||+|||+||||+|++|||+.
T Consensus 77 iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~-------------------------------- 124 (317)
T TIGR01293 77 ITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDP-------------------------------- 124 (317)
T ss_pred EEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCC--------------------------------
Confidence 99998432 357899999999999999999999999999852
Q ss_pred hhhhhhcccCCCCCCCCCCCCCcCCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHh----CCCCcee
Q psy15065 564 VTREMAFRLSPHIEGDTLFPADANGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDK----GTIKPVV 639 (773)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~----~~~~~~~ 639 (773)
..++.++|++|++|+++||||+||||||+.++++++... ..+++++
T Consensus 125 ------------------------------~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~ 174 (317)
T TIGR01293 125 ------------------------------NTPMEETVRAMTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPIC 174 (317)
T ss_pred ------------------------------CCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcce
Confidence 134569999999999999999999999999999887643 2367889
Q ss_pred eeeccCCcCCh---HHHHHHHHhcCceEEEecCCCCCCCCCCCCC----CCC------------CC---------CcHHH
Q psy15065 640 NQVECHPYLTQ---HKLKQWCEERQILITAYSPLGSPDRPWAKPG----DPS------------LL---------DDPKI 691 (773)
Q Consensus 640 ~Q~~~~~~~~~---~~l~~~~~~~gI~via~spL~~g~~~~~~~~----~~~------------~~---------~~~~l 691 (773)
+|++||++.++ .+++++|+++||++++||||++|.++..... ... .. ..+.+
T Consensus 175 ~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 254 (317)
T TIGR01293 175 EQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSGIPPYSRATLKGYQWLKDKILSEEGRRQQARLKDL 254 (317)
T ss_pred eccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCcccccccccchhhhhhcchhhHHHHHHHHHH
Confidence 99999999874 3699999999999999999998865432211 000 00 01468
Q ss_pred HHHHHHhCCCHHHHHHHHHHhCCcE--EeeCCCCHHHHHHhhccccc--ccCHHHHHHHHcc
Q psy15065 692 KEIAAKYNKTSAQILIKYQVQQGNI--CIPKSVTPSRIEENAQIFDF--ELAPEDIQTIDSF 749 (773)
Q Consensus 692 ~~ia~~~g~s~aqlaL~w~l~~~~v--~i~G~~~~~~l~enl~a~~~--~Lt~e~~~~I~~l 749 (773)
.++|+++|+|++|+||+|++++|.+ +|||+++++||++|+++++. +||++++++|+++
T Consensus 255 ~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 255 QAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred HHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 8999999999999999999999764 69999999999999999987 9999999999975
No 10
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=2.4e-48 Score=426.74 Aligned_cols=287 Identities=21% Similarity=0.283 Sum_probs=231.9
Q ss_pred cCeEEc-cCCcccCccceeccccC----cchHHHHHHHHHHcCCCeEecCCCCC----------CHHHHHHHHHhhhhcC
Q psy15065 418 FPFVTF-NNGLKFPIFGLGTWKSK----KGEVKQAVGYAIDIGYRHIDCAHVYE----------NEDEVGDAIAQKLKDN 482 (773)
Q Consensus 418 ~~~~~L-~tgl~vs~lglGt~~~~----~~~~~~~l~~Ale~Gin~fDTA~~Yg----------sE~~lG~~l~~~~~~~ 482 (773)
|+|++| ++|++||+||||||+++ .+++.++|+.|+++|||+||||+.|| +|..+|++|++ .
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~----~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAK----R 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhh----c
Confidence 678999 99999999999999874 56889999999999999999999997 79999999985 1
Q ss_pred CCCCCCeEEEecCCCC------------CCChhhHHHHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhcc
Q psy15065 483 VVKREDLYITSKLWNT------------FHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHW 550 (773)
Q Consensus 483 ~~~R~~v~I~TK~~~~------------~~~~~~i~~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~ 550 (773)
..|++++|+||++.. ..+++.+++++++||+|||+||||||++|||+.... .++
T Consensus 77 -~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~--~~~----------- 142 (346)
T PRK10625 77 -GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTN--CFG----------- 142 (346)
T ss_pred -CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccc--ccc-----------
Confidence 269999999998531 357899999999999999999999999999963110 000
Q ss_pred ccccccCCCCccchhhhhhcccCCCCCCCCCCCCCcCCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHH
Q psy15065 551 PQAYKVSNDFPCAVTREMAFRLSPHIEGDTLFPADANGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDIL 630 (773)
Q Consensus 551 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~ 630 (773)
.+. ..... .....++.++|++|++|+++||||+||||||+.+++++++
T Consensus 143 ---------------------------~~~-~~~~~----~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~ 190 (346)
T PRK10625 143 ---------------------------KLG-YSWTD----SAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYL 190 (346)
T ss_pred ---------------------------ccc-ccccc----ccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHH
Confidence 000 00000 0013467899999999999999999999999999998876
Q ss_pred Hh----CCCCceeeeeccCCcCCh--HHHHHHHHhcCceEEEecCCCCCCCCCCCCC-----C-C-CCC-----------
Q psy15065 631 DK----GTIKPVVNQVECHPYLTQ--HKLKQWCEERQILITAYSPLGSPDRPWAKPG-----D-P-SLL----------- 686 (773)
Q Consensus 631 ~~----~~~~~~~~Q~~~~~~~~~--~~l~~~~~~~gI~via~spL~~g~~~~~~~~-----~-~-~~~----------- 686 (773)
.. +...+.++|++||++.+. .+++++|+++||++++||||++|.++..... . . ...
T Consensus 191 ~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (346)
T PRK10625 191 HLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQT 270 (346)
T ss_pred HHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccccCeeccCCCCCCCCCCCcccccccccccccchhH
Confidence 42 223578899999998764 5799999999999999999998865432110 0 0 000
Q ss_pred --CcHHHHHHHHHhCCCHHHHHHHHHHhCCcE--EeeCCCCHHHHHHhhcccccccCHHHHHHHHccccCCc
Q psy15065 687 --DDPKIKEIAAKYNKTSAQILIKYQVQQGNI--CIPKSVTPSRIEENAQIFDFELAPEDIQTIDSFNRNHR 754 (773)
Q Consensus 687 --~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v--~i~G~~~~~~l~enl~a~~~~Lt~e~~~~I~~l~~~~r 754 (773)
..+.+.++|+++|+|++|+||+|++++|.+ +|||+++++||++|+++++++|+++++++|+++.+.+.
T Consensus 271 ~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~en~~a~~~~L~~~~~~~l~~~~~~~~ 342 (346)
T PRK10625 271 QKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLKTNIESLHLTLSEEVLAEIEAVHQVYT 342 (346)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhhcC
Confidence 125788999999999999999999999976 59999999999999999999999999999999875443
No 11
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.7e-48 Score=424.69 Aligned_cols=272 Identities=18% Similarity=0.323 Sum_probs=229.3
Q ss_pred cccCeEEc-cCCcccCccceeccc-cC----cchHHHHHHHHHHcCCCeEecCCCCC-----CHHHHHHHHHhhhhcCCC
Q psy15065 416 INFPFVTF-NNGLKFPIFGLGTWK-SK----KGEVKQAVGYAIDIGYRHIDCAHVYE-----NEDEVGDAIAQKLKDNVV 484 (773)
Q Consensus 416 ~~~~~~~L-~tgl~vs~lglGt~~-~~----~~~~~~~l~~Ale~Gin~fDTA~~Yg-----sE~~lG~~l~~~~~~~~~ 484 (773)
..|+|++| ++|++||+||||||+ ++ .+++.++|+.|+++|||+||||+.|| +|+.+|++|++. ...
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~---~~~ 87 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLRED---FAA 87 (346)
T ss_pred CCcceeecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhc---ccC
Confidence 35889999 999999999999996 42 35678999999999999999999998 599999999852 123
Q ss_pred CCCCeEEEecCCC----C----CCChhhHHHHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhcccccccc
Q psy15065 485 KREDLYITSKLWN----T----FHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHWPQAYKV 556 (773)
Q Consensus 485 ~R~~v~I~TK~~~----~----~~~~~~i~~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~p~~~~~ 556 (773)
.|+++||+||++. . ..+++.+++++++||+|||+||||+|++|||+.
T Consensus 88 ~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~------------------------- 142 (346)
T PRK09912 88 YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDE------------------------- 142 (346)
T ss_pred CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCC-------------------------
Confidence 6999999999752 1 246888999999999999999999999999852
Q ss_pred CCCCccchhhhhhcccCCCCCCCCCCCCCcCCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHH---hC
Q psy15065 557 SNDFPCAVTREMAFRLSPHIEGDTLFPADANGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILD---KG 633 (773)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~---~~ 633 (773)
..++.++|++|++|+++||||+||||||++++++++.+ ..
T Consensus 143 -------------------------------------~~~~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~ 185 (346)
T PRK09912 143 -------------------------------------NTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREW 185 (346)
T ss_pred -------------------------------------CCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhc
Confidence 13457999999999999999999999999999886654 44
Q ss_pred CCCceeeeeccCCcCCh---HHHHHHHHhcCceEEEecCCCCCCCCCCCCC----CC--------------CCCC-----
Q psy15065 634 TIKPVVNQVECHPYLTQ---HKLKQWCEERQILITAYSPLGSPDRPWAKPG----DP--------------SLLD----- 687 (773)
Q Consensus 634 ~~~~~~~Q~~~~~~~~~---~~l~~~~~~~gI~via~spL~~g~~~~~~~~----~~--------------~~~~----- 687 (773)
.++++++|++||++.+. .+++++|+++||++++||||++|.++..... .. ....
T Consensus 186 ~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (346)
T PRK09912 186 KIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLN 265 (346)
T ss_pred CCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCCCCCCccccccccchhhhchhhccHHHHH
Confidence 56888999999999873 4699999999999999999999865432110 00 0011
Q ss_pred -cHHHHHHHHHhCCCHHHHHHHHHHhCCcE--EeeCCCCHHHHHHhhccc-ccccCHHHHHHHHccccC
Q psy15065 688 -DPKIKEIAAKYNKTSAQILIKYQVQQGNI--CIPKSVTPSRIEENAQIF-DFELAPEDIQTIDSFNRN 752 (773)
Q Consensus 688 -~~~l~~ia~~~g~s~aqlaL~w~l~~~~v--~i~G~~~~~~l~enl~a~-~~~Lt~e~~~~I~~l~~~ 752 (773)
.+.+.++|+++|+|++|+||+|++++|.+ +|||+++++||++|++++ .++|+++++++|+++.++
T Consensus 266 ~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 266 SLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEELAQIDQHIAD 334 (346)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHHHHHHHhhCc
Confidence 25688999999999999999999999854 699999999999999998 489999999999998765
No 12
>KOG1575|consensus
Probab=100.00 E-value=7.1e-48 Score=405.58 Aligned_cols=251 Identities=25% Similarity=0.336 Sum_probs=220.3
Q ss_pred cccccCCHHHHHHHHHHHHHcCCCEEEcCCCCC---CHHHHHHHHHhhHhcCCCCCCcEEEEeccCCC------CCCCHH
Q psy15065 2 YIMFQSLEREVYEAVCHAIDLGYRHFDCAYYYQ---NEGQIGEAIQDKISQGVITREDIFITTKLWIT------FYSSPD 72 (773)
Q Consensus 2 ~g~~~~~~~~a~~~l~~Al~~Gin~iDTA~~Yg---~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~------~~~~~~ 72 (773)
.++|+.++++|.+++++|+++|+||||||++|| ||..+|++|+++ +.+|++|||+||++.. .+.++.
T Consensus 36 ~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~----~~~R~~vviaTK~~~~~~~~~~~G~~~~ 111 (336)
T KOG1575|consen 36 TFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR----GWRRDKVVIATKFGFDYGGETPRGLSRK 111 (336)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc----CCcCCcEEEEEEEeccCCCcCCCCCcHH
Confidence 345677999999999999999999999999998 599999999986 4789999999999754 345778
Q ss_pred HHHHHHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCHHH
Q psy15065 73 LIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQ 152 (773)
Q Consensus 73 ~i~~~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~ 152 (773)
++..+++.||+|||+|||||||+||+ |..+|++|+|++|.+|+++|||||||+|++++++
T Consensus 112 ~i~~~~~~s~~rl~~~~IDl~q~Hr~--------------------D~~~piee~m~aL~~lve~Gki~yiGlSe~sa~~ 171 (336)
T KOG1575|consen 112 HIIEGVRDSLRRLQTDYIDLLQVHRW--------------------DPMVPIEETMRALTDLVEQGKIRYWGLSEWSAEE 171 (336)
T ss_pred HHHHHHHHHHHhcCCCeeEEEEEccc--------------------CCCCCHHHHHHHHHHHHhcCceEEEEeccCCHHH
Confidence 99999999999999999999999997 7889999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCC--------CC---------CC
Q psy15065 153 LETLLGVARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFR--------AK---------VP 215 (773)
Q Consensus 153 l~~~~~~a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~--------~~---------~~ 215 (773)
+.++...++++++++|++||++.+..- +.+++++|++.||++++|||||+|....+ .. .+
T Consensus 172 I~~a~~~~~~p~~s~Q~eysl~~Rd~e---e~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~~~ 248 (336)
T KOG1575|consen 172 IREAHAVAPIPIVAVQVEYSLLSRDKE---ERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGLSP 248 (336)
T ss_pred HHHHHHhcCCCceEeeeechhhhcchh---hhhHHHHHHHcCcceEEecccccceeccCccccccccccccccccccccc
Confidence 999999999999999999999866542 67799999999999999999998721111 00 01
Q ss_pred CCCC-------hHHHHHHHHHhCCCHHHHhHhCc--------ccCCCCCHHHHHHHhcccCCCCCHHHHHHHHccccCC
Q psy15065 216 FVLE-------DQTVKDIASRYDKTPAQIQLGNI--------TVPKSVTKSRLEENRDIFDFELSQEDMDTLDGLDANG 279 (773)
Q Consensus 216 ~~~~-------~~~l~~iA~~~g~s~aqvAL~~v--------vi~g~~~~~ql~enl~a~~~~Lt~e~~~~L~~~~~~~ 279 (773)
.... ...+.+||+++|+|++|+||+|+ +|||+++.+||+||++|+.+.|+++++.+|+++....
T Consensus 249 ~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~ 327 (336)
T KOG1575|consen 249 QTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEIIDKI 327 (336)
T ss_pred ccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhhccc
Confidence 1101 14688999999999999999987 8999999999999999999999999999999998763
No 13
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-46 Score=403.11 Aligned_cols=254 Identities=22% Similarity=0.336 Sum_probs=218.7
Q ss_pred EEccCCcccCccceeccccC----------cchHHHHHHHHHHcCCCeEecCCCCC---CHHHHHHHHHhhhhcCCCCCC
Q psy15065 421 VTFNNGLKFPIFGLGTWKSK----------KGEVKQAVGYAIDIGYRHIDCAHVYE---NEDEVGDAIAQKLKDNVVKRE 487 (773)
Q Consensus 421 ~~L~tgl~vs~lglGt~~~~----------~~~~~~~l~~Ale~Gin~fDTA~~Yg---sE~~lG~~l~~~~~~~~~~R~ 487 (773)
++|+ |++||+||||||+++ .+++.++|+.|+++|||+||||+.|| +|+.+|++++. .|+
T Consensus 10 ~~l~-g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-------~R~ 81 (290)
T PRK10376 10 FTLG-GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-------YPD 81 (290)
T ss_pred eecC-CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-------CCC
Confidence 4456 999999999999863 35688999999999999999999997 47889988863 499
Q ss_pred CeEEEecCCC---------CCCChhhHHHHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhccccccccCC
Q psy15065 488 DLYITSKLWN---------TFHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHWPQAYKVSN 558 (773)
Q Consensus 488 ~v~I~TK~~~---------~~~~~~~i~~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~p~~~~~~~ 558 (773)
++||+||++. ...+++.+++++++||+|||+||||+|++||+. .+|+|.
T Consensus 82 ~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~----------------~~h~p~------ 139 (290)
T PRK10376 82 DLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMG----------------DGHGPA------ 139 (290)
T ss_pred eEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccC----------------CCCCCC------
Confidence 9999999842 346788999999999999999999999999863 145441
Q ss_pred CCccchhhhhhcccCCCCCCCCCCCCCcCCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCCce
Q psy15065 559 DFPCAVTREMAFRLSPHIEGDTLFPADANGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPV 638 (773)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~ 638 (773)
..++.++|++|++|+++||||+||||||+.++++++.+.+. +.
T Consensus 140 -----------------------------------~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~--~~ 182 (290)
T PRK10376 140 -----------------------------------EGSIEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIAE--IV 182 (290)
T ss_pred -----------------------------------CCCHHHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhCC--eE
Confidence 12467899999999999999999999999999999988764 57
Q ss_pred eeeeccCCcCCh-HHHHHHHHhcCceEEEecCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHHHHhCC-c-
Q psy15065 639 VNQVECHPYLTQ-HKLKQWCEERQILITAYSPLGSPDRPWAKPGDPSLLDDPKIKEIAAKYNKTSAQILIKYQVQQG-N- 715 (773)
Q Consensus 639 ~~Q~~~~~~~~~-~~l~~~~~~~gI~via~spL~~g~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~-~- 715 (773)
++|++||++.+. .+++++|+++||++++|+||+++. ....+.+.++|+++|+|++|+||+|+++++ .
T Consensus 183 ~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g~~----------~~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~ 252 (290)
T PRK10376 183 CVQNHYNLAHRADDALIDALARDGIAYVPFFPLGGFT----------PLQSSTLSDVAASLGATPMQVALAWLLQRSPNI 252 (290)
T ss_pred EEecccCCCcCChHHHHHHHHHcCCEEEEeecCCCCC----------hhhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCe
Confidence 889999998874 579999999999999999998431 113468999999999999999999999874 3
Q ss_pred EEeeCCCCHHHHHHhhcccccccCHHHHHHHHcccc
Q psy15065 716 ICIPKSVTPSRIEENAQIFDFELAPEDIQTIDSFNR 751 (773)
Q Consensus 716 v~i~G~~~~~~l~enl~a~~~~Lt~e~~~~I~~l~~ 751 (773)
++|+|+++++|+++|+++++++|++++++.|+++.+
T Consensus 253 ~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 253 LLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred eEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 469999999999999999999999999999998754
No 14
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=8e-47 Score=406.72 Aligned_cols=241 Identities=31% Similarity=0.480 Sum_probs=209.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCCCCC---CHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCC---------CCCHHHHH
Q psy15065 8 LEREVYEAVCHAIDLGYRHFDCAYYYQ---NEGQIGEAIQDKISQGVITREDIFITTKLWITF---------YSSPDLIR 75 (773)
Q Consensus 8 ~~~~a~~~l~~Al~~Gin~iDTA~~Yg---~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~---------~~~~~~i~ 75 (773)
+++++.++|++|+++||||||||++|| ||+.+|++|++. ..|++|||+||++... +.++++|+
T Consensus 31 ~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~-----~~Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~ 105 (316)
T COG0667 31 EEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER-----GRRDKVVIATKVGYRPGDPGPNGVFGLSRDHIR 105 (316)
T ss_pred hhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc-----CCCCeEEEEEeeccCCCCCCCCccCCCCHHHHH
Confidence 345677899999999999999999998 699999999975 2299999999997643 35899999
Q ss_pred HHHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCHHHHHH
Q psy15065 76 KCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQLET 155 (773)
Q Consensus 76 ~~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~ 155 (773)
++++.||+|||||||||||+||| |..++.+|++++|++|+++||||+||+||++++++.+
T Consensus 106 ~~v~~SL~RLgtd~IDl~~iH~~--------------------d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~ 165 (316)
T COG0667 106 RAVEASLKRLGTDYIDLYQLHRP--------------------DPETPIEETLEALDELVREGKIRYIGVSNYSAEQIAE 165 (316)
T ss_pred HHHHHHHHHhCCCceeEEEeCCC--------------------CCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHH
Confidence 99999999999999999999998 6688999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCC--CCCC-------CC-CCCCC------
Q psy15065 156 LLGVARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTN--PFRA-------KV-PFVLE------ 219 (773)
Q Consensus 156 ~~~~a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~--~~~~-------~~-~~~~~------ 219 (773)
+.+.+ .+++++|.+||++.+ .. +.+++++|+++||++++||||++|-. +... .. +.+..
T Consensus 166 a~~~~-~~~~~~Q~~ynl~~R-~~---e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~~~~~r~~~~~~~~~~~~~~~ 240 (316)
T COG0667 166 ALAVA-APIDSLQPEYNLLER-DA---EKELLPLCREEGIGLLAYSPLASGLLTGKYLPGPEGSRASELPRFQRELTERG 240 (316)
T ss_pred HHHhc-CCceeecccCccccc-cc---hhHHHHHHHHcCCeEEEecCccccccCCCcCCCcchhhccccccchhhhhHHH
Confidence 99987 678999999999864 32 67799999999999999999998721 1111 00 11110
Q ss_pred ---hHHHHHHHHHhCCCHHHHhHhCc--------ccCCCCCHHHHHHHhcccCCCCCHHHHHHHHccccC
Q psy15065 220 ---DQTVKDIASRYDKTPAQIQLGNI--------TVPKSVTKSRLEENRDIFDFELSQEDMDTLDGLDAN 278 (773)
Q Consensus 220 ---~~~l~~iA~~~g~s~aqvAL~~v--------vi~g~~~~~ql~enl~a~~~~Lt~e~~~~L~~~~~~ 278 (773)
...++++|+++|+||+|+||+|+ +|+|+++++||++|++|+++.|+++++++|++....
T Consensus 241 ~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 241 LAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 14588999999999999999987 799999999999999999999999999999987654
No 15
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=4e-46 Score=403.94 Aligned_cols=270 Identities=18% Similarity=0.239 Sum_probs=222.8
Q ss_pred eEEc-cCCcccCccceecccc-------CcchHHHHHHHHHHcCCCeEecCCCCC---CHHHHHHHHHhhhhcCCCCCCC
Q psy15065 420 FVTF-NNGLKFPIFGLGTWKS-------KKGEVKQAVGYAIDIGYRHIDCAHVYE---NEDEVGDAIAQKLKDNVVKRED 488 (773)
Q Consensus 420 ~~~L-~tgl~vs~lglGt~~~-------~~~~~~~~l~~Ale~Gin~fDTA~~Yg---sE~~lG~~l~~~~~~~~~~R~~ 488 (773)
||+| +||++||.||||||++ +.+++.++|+.|+++|||+||||+.|| +|..+|++|++ ...+|++
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~----~~~~R~~ 76 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKA----LGIPREK 76 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHh----CCCCcce
Confidence 5678 8999999999999875 356788999999999999999999997 49999999986 3357999
Q ss_pred eEEEecCCCC----CCChhhHHHHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhccccccccCCCCccch
Q psy15065 489 LYITSKLWNT----FHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHWPQAYKVSNDFPCAV 564 (773)
Q Consensus 489 v~I~TK~~~~----~~~~~~i~~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~p~~~~~~~~~~~~~ 564 (773)
+||+||+++. ..+++.+++++++||++||+||||+|+||||+...
T Consensus 77 v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~------------------------------- 125 (314)
T PLN02587 77 YVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGS------------------------------- 125 (314)
T ss_pred EEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcc-------------------------------
Confidence 9999999742 46789999999999999999999999999985210
Q ss_pred hhhhhcccCCCCCCCCCCCCCcCCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHh---CCCCceeee
Q psy15065 565 TREMAFRLSPHIEGDTLFPADANGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDK---GTIKPVVNQ 641 (773)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~---~~~~~~~~Q 641 (773)
.+..+.++|++|++|+++||||+||+|||++++++.+... ..+.++++|
T Consensus 126 ----------------------------~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~ 177 (314)
T PLN02587 126 ----------------------------LDQIVNETIPALQKLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSY 177 (314)
T ss_pred ----------------------------hhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEec
Confidence 0124568999999999999999999999999988877653 234566678
Q ss_pred eccCCcCCh-HHHHHHHHhcCceEEEecCCCCCCCCCCCCCCCCC------CCcHHHHHHHHHhCCCHHHHHHHHHHhCC
Q psy15065 642 VECHPYLTQ-HKLKQWCEERQILITAYSPLGSPDRPWAKPGDPSL------LDDPKIKEIAAKYNKTSAQILIKYQVQQG 714 (773)
Q Consensus 642 ~~~~~~~~~-~~l~~~~~~~gI~via~spL~~g~~~~~~~~~~~~------~~~~~l~~ia~~~g~s~aqlaL~w~l~~~ 714 (773)
+.|++..+. .+++++|+++||++++|+||++|.+.......... ...+.++++|+++|+|++|+||+|++++|
T Consensus 178 ~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~ 257 (314)
T PLN02587 178 CHYSLNDSSLEDLLPYLKSKGVGVISASPLAMGLLTENGPPEWHPAPPELKSACAAAATHCKEKGKNISKLALQYSLSNK 257 (314)
T ss_pred cccCcchhhHHHHHHHHHHcCceEEEechhhccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 888876652 58999999999999999999998654322111000 00134678999999999999999999999
Q ss_pred cE--EeeCCCCHHHHHHhhcccc----cccCHHHHHHHHccccC
Q psy15065 715 NI--CIPKSVTPSRIEENAQIFD----FELAPEDIQTIDSFNRN 752 (773)
Q Consensus 715 ~v--~i~G~~~~~~l~enl~a~~----~~Lt~e~~~~I~~l~~~ 752 (773)
.| +|+|+++++||++|++++. .+|+++++++|+++...
T Consensus 258 ~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~~ 301 (314)
T PLN02587 258 DISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILAP 301 (314)
T ss_pred CCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhcc
Confidence 65 6999999999999999976 37999999999988753
No 16
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=4.1e-46 Score=394.40 Aligned_cols=240 Identities=33% Similarity=0.570 Sum_probs=213.4
Q ss_pred cccccCCHHHHHHHHHHHHHcCCCEEEcCCCCCCHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHHH
Q psy15065 2 YIMFQSLEREVYEAVCHAIDLGYRHFDCAYYYQNEGQIGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQES 81 (773)
Q Consensus 2 ~g~~~~~~~~a~~~l~~Al~~Gin~iDTA~~Yg~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~S 81 (773)
+|+|+.+.+++.++++.|+++||||||||+.||+|..+|++|++. +.+|+++||+||++.. ..+++.+++++++|
T Consensus 8 lGt~~~~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~----~~~R~~v~i~TK~~~~-~~~~~~~~~~~~~S 82 (267)
T PRK11172 8 LGTFRLKDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES----GVPRDELFITTKIWID-NLAKDKLIPSLKES 82 (267)
T ss_pred eEccccChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc----CCChhHeEEEEEeCCC-CCCHHHHHHHHHHH
Confidence 589998889999999999999999999999999999999999853 3579999999998654 34789999999999
Q ss_pred HHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCHHHHHHHHHhcC
Q psy15065 82 LDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVAR 161 (773)
Q Consensus 82 L~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~~~~~a~ 161 (773)
|+|||+||||+|++|||.. +...+..++|++|++|+++||||+||||||+.++++++++.++
T Consensus 83 L~rL~~d~iDl~~lH~~~~------------------~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~ 144 (267)
T PRK11172 83 LQKLRTDYVDLTLIHWPSP------------------NDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVG 144 (267)
T ss_pred HHHhCCCceEEEEeCCCCC------------------CCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcC
Confidence 9999999999999999831 1235678999999999999999999999999999999988766
Q ss_pred C-CeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHhHh
Q psy15065 162 I-KPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDIASRYDKTPAQIQLG 240 (773)
Q Consensus 162 ~-~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~~l~~iA~~~g~s~aqvAL~ 240 (773)
. +++++|++||++.+ +.+++++|+++||++++||||++|. +...+.+.++|+++|+|++|+||+
T Consensus 145 ~~~~~~~Q~~~~~~~~------~~~ll~~~~~~gi~v~a~spl~~G~---------~~~~~~l~~~a~~~~~s~aqval~ 209 (267)
T PRK11172 145 AENIATNQIELSPYLQ------NRKVVAFAKEHGIHVTSYMTLAYGK---------VLKDPVIARIAAKHNATPAQVILA 209 (267)
T ss_pred CCCCeEEeeecCCCCC------cHHHHHHHHHCCCEEEEECCCCCCc---------ccCCHHHHHHHHHhCCCHHHHHHH
Confidence 4 68999999987632 4689999999999999999999873 233467999999999999999998
Q ss_pred Cc------ccCCCCCHHHHHHHhcccCCCCCHHHHHHHHccccCC
Q psy15065 241 NI------TVPKSVTKSRLEENRDIFDFELSQEDMDTLDGLDANG 279 (773)
Q Consensus 241 ~v------vi~g~~~~~ql~enl~a~~~~Lt~e~~~~L~~~~~~~ 279 (773)
|+ +|||+++++|+++|+++++++||++++++|+++..+.
T Consensus 210 w~l~~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~ 254 (267)
T PRK11172 210 WAMQLGYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRNG 254 (267)
T ss_pred HHHhCCCEeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccCC
Confidence 75 8999999999999999999999999999999997653
No 17
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.9e-45 Score=393.65 Aligned_cols=264 Identities=35% Similarity=0.580 Sum_probs=230.4
Q ss_pred eEEc-cCCcccCccceeccccCc-----chHHHHHHHHHHcCCCeEecCCCCC---CHHHHHHHHHhhhhcCCCCCCCeE
Q psy15065 420 FVTF-NNGLKFPIFGLGTWKSKK-----GEVKQAVGYAIDIGYRHIDCAHVYE---NEDEVGDAIAQKLKDNVVKREDLY 490 (773)
Q Consensus 420 ~~~L-~tgl~vs~lglGt~~~~~-----~~~~~~l~~Ale~Gin~fDTA~~Yg---sE~~lG~~l~~~~~~~~~~R~~v~ 490 (773)
|++| ++|++||+||||||.++. +++.++++.|++.|||+||||+.|| +|+.+|++|++. . .|++++
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~----~-~R~~~~ 75 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER----G-PREEVF 75 (285)
T ss_pred CcccCCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc----C-CcCcEE
Confidence 4667 699999999999998754 7899999999999999999999998 899999999872 1 599999
Q ss_pred EEecCCCCC-----CChhhHHHHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhccccccccCCCCccchh
Q psy15065 491 ITSKLWNTF-----HRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHWPQAYKVSNDFPCAVT 565 (773)
Q Consensus 491 I~TK~~~~~-----~~~~~i~~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~p~~~~~~~~~~~~~~ 565 (773)
|+||++... .+++.+++++++||++||+||||+|+||+|+...
T Consensus 76 i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~-------------------------------- 123 (285)
T cd06660 76 IATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDT-------------------------------- 123 (285)
T ss_pred EEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCC--------------------------------
Confidence 999998664 5889999999999999999999999999985311
Q ss_pred hhhhcccCCCCCCCCCCCCCcCCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCCceeeeeccC
Q psy15065 566 REMAFRLSPHIEGDTLFPADANGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECH 645 (773)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~ 645 (773)
....++|++|++++++||||+||||||+.+.+.+++..+..++.++|++||
T Consensus 124 -----------------------------~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n 174 (285)
T cd06660 124 -----------------------------PDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYN 174 (285)
T ss_pred -----------------------------CCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccC
Confidence 135699999999999999999999999999999999988788999999999
Q ss_pred CcCChHH--HHHHHHhcCceEEEecCCCCCCCCCCCCCCCCC---CCcHHHHHHHHHhCCCHHHHHHHHHHhCCc--EEe
Q psy15065 646 PYLTQHK--LKQWCEERQILITAYSPLGSPDRPWAKPGDPSL---LDDPKIKEIAAKYNKTSAQILIKYQVQQGN--ICI 718 (773)
Q Consensus 646 ~~~~~~~--l~~~~~~~gI~via~spL~~g~~~~~~~~~~~~---~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~--v~i 718 (773)
++.+... ++++|+++||++++|+||++|............ .....+..++++++++++|+||+|++++|. ++|
T Consensus 175 ~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i 254 (285)
T cd06660 175 LLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVI 254 (285)
T ss_pred cccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCChhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEE
Confidence 9998754 999999999999999999988654332211111 123578899999999999999999999964 469
Q ss_pred eCCCCHHHHHHhhcccccccCHHHHHHHHcc
Q psy15065 719 PKSVTPSRIEENAQIFDFELAPEDIQTIDSF 749 (773)
Q Consensus 719 ~G~~~~~~l~enl~a~~~~Lt~e~~~~I~~l 749 (773)
+|+++++|+++|++++.++|++++++.|+++
T Consensus 255 ~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 255 PGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred eCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 9999999999999999999999999999863
No 18
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.4e-44 Score=383.89 Aligned_cols=240 Identities=40% Similarity=0.696 Sum_probs=212.1
Q ss_pred cccccCCHHHHHHHHHHHHHcCCCEEEcCCCCCCHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHHH
Q psy15065 2 YIMFQSLEREVYEAVCHAIDLGYRHFDCAYYYQNEGQIGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQES 81 (773)
Q Consensus 2 ~g~~~~~~~~a~~~l~~Al~~Gin~iDTA~~Yg~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~S 81 (773)
+|+|+.+++++.++|++|+++||||||||+.||+|..+|++|++. +++|+++||+||++.. +++.+++++++|
T Consensus 20 lG~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~----~~~R~~~~i~tK~~~~---~~~~~~~~~~~s 92 (275)
T PRK11565 20 LGVWQASNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA----SVAREELFITTKLWND---DHKRPREALEES 92 (275)
T ss_pred eECccCCHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc----CCCHHHEEEEEEecCc---chHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999863 3579999999998743 578999999999
Q ss_pred HHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCHHHHHHHHHhcC
Q psy15065 82 LDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVAR 161 (773)
Q Consensus 82 L~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~~~~~a~ 161 (773)
|+|||+||||+|++|||.. ...++.++|++|++|+++||||+||||||+++++++++..++
T Consensus 93 L~rL~~d~iDl~~lH~p~~-------------------~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~ 153 (275)
T PRK11565 93 LKKLQLDYVDLYLMHWPVP-------------------AIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETG 153 (275)
T ss_pred HHHhCCCceEEEEecCCCC-------------------CcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhCC
Confidence 9999999999999999821 112468999999999999999999999999999999998888
Q ss_pred CCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHhHhC
Q psy15065 162 IKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDIASRYDKTPAQIQLGN 241 (773)
Q Consensus 162 ~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~~l~~iA~~~g~s~aqvAL~~ 241 (773)
+.|+++|++|+.+.+ +.+++++|+++||++++||||++|.. .....+.+.++|+++|+|++|+||+|
T Consensus 154 v~~~~~Q~~~~~~~~------~~~~~~~~~~~~i~~~a~spl~~G~~-------~~~~~~~l~~ia~~~g~s~aq~aL~w 220 (275)
T PRK11565 154 VTPVINQIELHPLMQ------QRQLHAWNATHKIQTESWSPLAQGGK-------GVFDQKVIRDLADKYGKTPAQIVIRW 220 (275)
T ss_pred CCceeeeeecCCccc------hHHHHHHHHHCCCEEEEEccCCCCCc-------ccccCHHHHHHHHHhCCCHHHHHHHH
Confidence 889999988876532 46899999999999999999986531 12235789999999999999999987
Q ss_pred c------ccCCCCCHHHHHHHhcccCCCCCHHHHHHHHccccCCC
Q psy15065 242 I------TVPKSVTKSRLEENRDIFDFELSQEDMDTLDGLDANGR 280 (773)
Q Consensus 242 v------vi~g~~~~~ql~enl~a~~~~Lt~e~~~~L~~~~~~~~ 280 (773)
+ +|||+++++|+++|+++++++|+++++++|+++....+
T Consensus 221 ~l~~~~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~ 265 (275)
T PRK11565 221 HLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKR 265 (275)
T ss_pred HHcCCCEeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccCC
Confidence 6 79999999999999999999999999999999986543
No 19
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.9e-44 Score=391.20 Aligned_cols=247 Identities=22% Similarity=0.331 Sum_probs=206.8
Q ss_pred ccccc-----CCHHHHHHHHHHHHHcCCCEEEcCCCCC---CHHHHHHHHHhhHhcCCCCCCcEEEEeccCCC------C
Q psy15065 2 YIMFQ-----SLEREVYEAVCHAIDLGYRHFDCAYYYQ---NEGQIGEAIQDKISQGVITREDIFITTKLWIT------F 67 (773)
Q Consensus 2 ~g~~~-----~~~~~a~~~l~~Al~~Gin~iDTA~~Yg---~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~------~ 67 (773)
+|+|+ .+++++.++|+.|+++|||+||||++|| ||+.+|++|++. +.+|+++||+||++.. .
T Consensus 16 lGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~----~~~R~~~~iaTK~~~~~~~~~~~ 91 (317)
T TIGR01293 16 LGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK----GWRRSSYVITTKIFWGGKAETER 91 (317)
T ss_pred ecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc----CCCcccEEEEeeeccCCCCCCCC
Confidence 36664 5788999999999999999999999998 699999999852 2469999999998532 2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccC
Q psy15065 68 YSSPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSN 147 (773)
Q Consensus 68 ~~~~~~i~~~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn 147 (773)
+.+++.+++++++||+||||||||+|++||| +...+++++|++|++|+++||||+|||||
T Consensus 92 ~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~--------------------~~~~~~~e~~~aL~~l~~~G~ir~iGvSn 151 (317)
T TIGR01293 92 GLSRKHIIEGLKASLERLQLEYVDIVFANRP--------------------DPNTPMEETVRAMTYVINQGMAMYWGTSR 151 (317)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcEeEEEeccC--------------------CCCCCHHHHHHHHHHHHHcCCeeEEEecC
Confidence 3478999999999999999999999999998 34567899999999999999999999999
Q ss_pred CCHHHHHHHHHhcC----CCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCC--CCCCCC------
Q psy15065 148 FNTKQLETLLGVAR----IKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNP--FRAKVP------ 215 (773)
Q Consensus 148 ~~~~~l~~~~~~a~----~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~--~~~~~~------ 215 (773)
|+.++++++...+. ++++++|++||++.+..+ +.+++++|+++||++++||||++|... .....+
T Consensus 152 ~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~---e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~~~~~~~~~ 228 (317)
T TIGR01293 152 WSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKV---EVQLPELYHKIGVGAMTWSPLACGLVSGKYDSGIPPYSRAT 228 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCCcceeccccChHhcchh---HHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCccccc
Confidence 99999988765543 678899999999854322 568999999999999999999976311 100000
Q ss_pred -----CC----C-C--------hHHHHHHHHHhCCCHHHHhHhCc--------ccCCCCCHHHHHHHhcccCC--CCCHH
Q psy15065 216 -----FV----L-E--------DQTVKDIASRYDKTPAQIQLGNI--------TVPKSVTKSRLEENRDIFDF--ELSQE 267 (773)
Q Consensus 216 -----~~----~-~--------~~~l~~iA~~~g~s~aqvAL~~v--------vi~g~~~~~ql~enl~a~~~--~Lt~e 267 (773)
.+ . . ...++++|+++|+|++|+||+|+ +|+|+++++||++|++++++ +||++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e 308 (317)
T TIGR01293 229 LKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSS 308 (317)
T ss_pred ccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHH
Confidence 00 0 0 14688999999999999999876 79999999999999999997 99999
Q ss_pred HHHHHHcc
Q psy15065 268 DMDTLDGL 275 (773)
Q Consensus 268 ~~~~L~~~ 275 (773)
++++|+++
T Consensus 309 ~~~~l~~~ 316 (317)
T TIGR01293 309 IIHEIDSI 316 (317)
T ss_pred HHHHHHhh
Confidence 99999975
No 20
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=2.4e-44 Score=384.68 Aligned_cols=255 Identities=29% Similarity=0.532 Sum_probs=214.1
Q ss_pred ccceecccc-----CcchHHHHHHHHHHcCCCeEecCCCC---CCHHHHHHHHHhhhhcCCCCCCCeEEEecC-----CC
Q psy15065 431 IFGLGTWKS-----KKGEVKQAVGYAIDIGYRHIDCAHVY---ENEDEVGDAIAQKLKDNVVKREDLYITSKL-----WN 497 (773)
Q Consensus 431 ~lglGt~~~-----~~~~~~~~l~~Ale~Gin~fDTA~~Y---gsE~~lG~~l~~~~~~~~~~R~~v~I~TK~-----~~ 497 (773)
+||||||++ +.+++.++|+.|++.|||+||||+.| ++|+.+|++|++ ...+|++++|+||+ +.
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~----~~~~r~~~~i~tK~~~~~~~~ 76 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRK----SRVPRDDIFISTKVYGDGKPE 76 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHH----TSSTGGGSEEEEEEESSSSTG
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccc----ccccccccccccccccccccc
Confidence 589999865 56789999999999999999999999 379999999997 56789999999999 55
Q ss_pred CCCChhhHHHHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhccccccccCCCCccchhhhhhcccCCCCC
Q psy15065 498 TFHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHWPQAYKVSNDFPCAVTREMAFRLSPHIE 577 (773)
Q Consensus 498 ~~~~~~~i~~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (773)
...+++.+++++++||++||+||||+|++|||+...
T Consensus 77 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~-------------------------------------------- 112 (283)
T PF00248_consen 77 PDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSE-------------------------------------------- 112 (283)
T ss_dssp GGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTS--------------------------------------------
T ss_pred ccccccccccccccccccccccchhccccccccccc--------------------------------------------
Confidence 678899999999999999999999999999996321
Q ss_pred CCCCCCCCcCCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCCceeeeeccCCc--CChHHHHH
Q psy15065 578 GDTLFPADANGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPY--LTQHKLKQ 655 (773)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~--~~~~~l~~ 655 (773)
....++|++|++|+++||||+||||||+++.++++...+.++++++|++||++ ....++++
T Consensus 113 -----------------~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~ 175 (283)
T PF00248_consen 113 -----------------DALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLE 175 (283)
T ss_dssp -----------------SHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHH
T ss_pred -----------------cccchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 13679999999999999999999999999999999888889999999999999 34678999
Q ss_pred HHHhcCceEEEecCCCCCCCCCCCCCCCC----------CCCcHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEeeCCCC
Q psy15065 656 WCEERQILITAYSPLGSPDRPWAKPGDPS----------LLDDPKIKEIAAKYNKTSAQILIKYQVQQG--NICIPKSVT 723 (773)
Q Consensus 656 ~~~~~gI~via~spL~~g~~~~~~~~~~~----------~~~~~~l~~ia~~~g~s~aqlaL~w~l~~~--~v~i~G~~~ 723 (773)
+|+++||++++|+||++|.+......... ....+.+.++++++|+|++|+||+|+++++ .++|+|+++
T Consensus 176 ~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~ 255 (283)
T PF00248_consen 176 FCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRDAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASS 255 (283)
T ss_dssp HHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSSTHGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SS
T ss_pred cccccccccccccccccCccccccccCCCcccccccchhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCC
Confidence 99999999999999999865432211111 144578999999999999999999999764 457999999
Q ss_pred HHHHHHhhcccccccCHHHHHHHHccc
Q psy15065 724 PSRIEENAQIFDFELAPEDIQTIDSFN 750 (773)
Q Consensus 724 ~~~l~enl~a~~~~Lt~e~~~~I~~l~ 750 (773)
++|+++|+++++++||++++++|+++.
T Consensus 256 ~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 256 PEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999999999999999999999875
No 21
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=5.4e-45 Score=359.40 Aligned_cols=267 Identities=25% Similarity=0.342 Sum_probs=233.3
Q ss_pred cCeEEc-cCCcccCccceeccccC-----cchHHHHHHHHHHcCCCeEecCCCCCC---HHHHHHHHHhhhhcCCCCCCC
Q psy15065 418 FPFVTF-NNGLKFPIFGLGTWKSK-----KGEVKQAVGYAIDIGYRHIDCAHVYEN---EDEVGDAIAQKLKDNVVKRED 488 (773)
Q Consensus 418 ~~~~~L-~tgl~vs~lglGt~~~~-----~~~~~~~l~~Ale~Gin~fDTA~~Ygs---E~~lG~~l~~~~~~~~~~R~~ 488 (773)
|.+.+| +.|+++|++.+|+|++. ..+..+.|..|+|.|||+||.|+.||+ |+++|.+|+- ...-|++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l----~p~lRek 76 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKL----APGLREK 76 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhc----Chhhhhh
Confidence 567788 69999999999999763 457889999999999999999999985 9999999986 5678999
Q ss_pred eEEEecCC------------CCCCChhhHHHHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhcccccccc
Q psy15065 489 LYITSKLW------------NTFHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHWPQAYKV 556 (773)
Q Consensus 489 v~I~TK~~------------~~~~~~~~i~~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~p~~~~~ 556 (773)
+.|.|||+ .++.+.++|.+++|+||++|+|||+|+++||+||+..
T Consensus 77 ieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLm----------------------- 133 (298)
T COG4989 77 IEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLM----------------------- 133 (298)
T ss_pred eEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccC-----------------------
Confidence 99999995 3467899999999999999999999999999997522
Q ss_pred CCCCccchhhhhhcccCCCCCCCCCCCCCcCCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCC
Q psy15065 557 SNDFPCAVTREMAFRLSPHIEGDTLFPADANGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIK 636 (773)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~ 636 (773)
.-+|+.+|+..|+++||||++|||||++.|++-+.+.-..+
T Consensus 134 ---------------------------------------d~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~ 174 (298)
T COG4989 134 ---------------------------------------DAEEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFT 174 (298)
T ss_pred ---------------------------------------CHHHHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccch
Confidence 22589999999999999999999999999999999888888
Q ss_pred ceeeeeccCCcCCh---HHHHHHHHhcCceEEEecCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhC-CCHHHHHHHHHHh
Q psy15065 637 PVVNQVECHPYLTQ---HKLKQWCEERQILITAYSPLGSPDRPWAKPGDPSLLDDPKIKEIAAKYN-KTSAQILIKYQVQ 712 (773)
Q Consensus 637 ~~~~Q~~~~~~~~~---~~l~~~~~~~gI~via~spL~~g~~~~~~~~~~~~~~~~~l~~ia~~~g-~s~aqlaL~w~l~ 712 (773)
.+.||+++++++.. ++.+++|+++.|..+|||||++|..... .+......+.+..||.++| +|.++||++|++.
T Consensus 175 LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g--~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR 252 (298)
T COG4989 175 LVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG--DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLR 252 (298)
T ss_pred hhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC--CcchHHHHHHHHHHHHHhCcccHHHHHHHHHHh
Confidence 99999999999874 6799999999999999999999853321 1222223468899999999 7999999999999
Q ss_pred CCc--EEeeCCCCHHHHHHhhcccccccCHHHHHHHHccccC
Q psy15065 713 QGN--ICIPKSVTPSRIEENAQIFDFELAPEDIQTIDSFNRN 752 (773)
Q Consensus 713 ~~~--v~i~G~~~~~~l~enl~a~~~~Lt~e~~~~I~~l~~~ 752 (773)
+|. .+|+|+.+++++++.+++++++||.+++-+|-.+..+
T Consensus 253 ~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G 294 (298)
T COG4989 253 HPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIG 294 (298)
T ss_pred CcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 997 4699999999999999999999999999999776543
No 22
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=2.1e-43 Score=387.02 Aligned_cols=251 Identities=20% Similarity=0.326 Sum_probs=208.0
Q ss_pred ccccc-----CCHHHHHHHHHHHHHcCCCEEEcCCCCC-----CHHHHHHHHHhhHhcCCCCCCcEEEEeccCCC-----
Q psy15065 2 YIMFQ-----SLEREVYEAVCHAIDLGYRHFDCAYYYQ-----NEGQIGEAIQDKISQGVITREDIFITTKLWIT----- 66 (773)
Q Consensus 2 ~g~~~-----~~~~~a~~~l~~Al~~Gin~iDTA~~Yg-----~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~----- 66 (773)
+|+|+ .+++++.++|++|+++|||+||||+.|| +|..+|++|++.. ...|+++||+||++..
T Consensus 30 lG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~---~~~Rd~~~I~TK~g~~~~~~~ 106 (346)
T PRK09912 30 LGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDF---AAYRDELIISTKAGYDMWPGP 106 (346)
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcc---cCCCCeEEEEEEecccCCCCc
Confidence 47775 3567889999999999999999999998 5999999998531 1359999999998631
Q ss_pred --CCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEe
Q psy15065 67 --FYSSPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIG 144 (773)
Q Consensus 67 --~~~~~~~i~~~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iG 144 (773)
.+.+++.+++++++||+||||||||+|++||| +...+++++|++|++|+++||||+||
T Consensus 107 ~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~--------------------~~~~~~~e~~~al~~l~~~GkIr~iG 166 (346)
T PRK09912 107 YGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRV--------------------DENTPMEETASALAHAVQSGKALYVG 166 (346)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCC--------------------CCCCCHHHHHHHHHHHHHcCCeeEEE
Confidence 12468999999999999999999999999998 34567899999999999999999999
Q ss_pred ccCCCHHHHHHHHHh---cCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCC--CCC-----
Q psy15065 145 VSNFNTKQLETLLGV---ARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFR--AKV----- 214 (773)
Q Consensus 145 vSn~~~~~l~~~~~~---a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~--~~~----- 214 (773)
||||++++++++.+. .+++++++|++||++.+.. .+.+++++|+++||++++||||++|....+ ...
T Consensus 167 vSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~---~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~~~~~~~ 243 (346)
T PRK09912 167 ISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWV---DKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSR 243 (346)
T ss_pred ecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceeccc---chhhHHHHHHHcCceEEEehhhcCccccCCCCCCCCCCcc
Confidence 999999998876653 3567899999999975432 245799999999999999999998732111 000
Q ss_pred ------------CCCCC------hHHHHHHHHHhCCCHHHHhHhCc--------ccCCCCCHHHHHHHhccc-CCCCCHH
Q psy15065 215 ------------PFVLE------DQTVKDIASRYDKTPAQIQLGNI--------TVPKSVTKSRLEENRDIF-DFELSQE 267 (773)
Q Consensus 215 ------------~~~~~------~~~l~~iA~~~g~s~aqvAL~~v--------vi~g~~~~~ql~enl~a~-~~~Lt~e 267 (773)
+.... .+.+.++|+++|+|++|+||+|+ +|||+++++||+||++++ +++|++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e 323 (346)
T PRK09912 244 MHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTE 323 (346)
T ss_pred ccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHH
Confidence 01111 15788999999999999999876 799999999999999998 5899999
Q ss_pred HHHHHHccccC
Q psy15065 268 DMDTLDGLDAN 278 (773)
Q Consensus 268 ~~~~L~~~~~~ 278 (773)
++++|+++.++
T Consensus 324 ~~~~l~~~~~~ 334 (346)
T PRK09912 324 ELAQIDQHIAD 334 (346)
T ss_pred HHHHHHHhhCc
Confidence 99999998765
No 23
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=4e-43 Score=385.48 Aligned_cols=261 Identities=25% Similarity=0.304 Sum_probs=208.6
Q ss_pred cccccC----CHHHHHHHHHHHHHcCCCEEEcCCCCC----------CHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCC
Q psy15065 2 YIMFQS----LEREVYEAVCHAIDLGYRHFDCAYYYQ----------NEGQIGEAIQDKISQGVITREDIFITTKLWITF 67 (773)
Q Consensus 2 ~g~~~~----~~~~a~~~l~~Al~~Gin~iDTA~~Yg----------~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~ 67 (773)
+|+|+. +++++.++|+.|+++||||||||+.|| ||..+|++|++. ..|+++||+||++...
T Consensus 18 lGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~-----~~R~~v~i~TK~~~~~ 92 (346)
T PRK10625 18 LGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR-----GSREKLIIASKVSGPS 92 (346)
T ss_pred EeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc-----CCcceEEEEcccccCC
Confidence 477763 678999999999999999999999997 799999999853 3599999999985321
Q ss_pred -----------CCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCC---CCCCCHHHHHHHHHH
Q psy15065 68 -----------YSSPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDF---DDSVDYVDVWKTMEC 133 (773)
Q Consensus 68 -----------~~~~~~i~~~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~---d~~~~~~e~~~aL~~ 133 (773)
..+++.+++++++||+||||||||||++|||...... +..++ ..+ +..++++|+|++|++
T Consensus 93 ~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~-----~~~~~-~~~~~~~~~~~~~e~~~aL~~ 166 (346)
T PRK10625 93 RNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNC-----FGKLG-YSWTDSAPAVSLLETLDALAE 166 (346)
T ss_pred cCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCccccc-----ccccc-cccccccCCCCHHHHHHHHHH
Confidence 2478999999999999999999999999998431100 00000 001 124578999999999
Q ss_pred HHHcCCcceEeccCCCHHHHHHHHHhc---C-CCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCC
Q psy15065 134 LVDEGLARSIGVSNFNTKQLETLLGVA---R-IKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNP 209 (773)
Q Consensus 134 L~~~GkIr~iGvSn~~~~~l~~~~~~a---~-~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~ 209 (773)
|+++||||+||||||+.+++++++..+ . ..++++|++||++.+.. +.+++++|+++||++++||||++|...
T Consensus 167 l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~----~~~ll~~~~~~gi~via~spL~~G~Lt 242 (346)
T PRK10625 167 QQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSF----EVGLAEVSQYEGVELLAYSCLAFGTLT 242 (346)
T ss_pred HHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccc----hhHHHHHHHHcCCeEEEeccccCeecc
Confidence 999999999999999999998876543 2 35788999999875432 568999999999999999999986311
Q ss_pred CC--C-----C-----CCCC---C------ChHHHHHHHHHhCCCHHHHhHhCc--------ccCCCCCHHHHHHHhccc
Q psy15065 210 FR--A-----K-----VPFV---L------EDQTVKDIASRYDKTPAQIQLGNI--------TVPKSVTKSRLEENRDIF 260 (773)
Q Consensus 210 ~~--~-----~-----~~~~---~------~~~~l~~iA~~~g~s~aqvAL~~v--------vi~g~~~~~ql~enl~a~ 260 (773)
.+ . . .+.+ . ....++++|+++|+|++|+||+|+ +|+|+++++||+||++++
T Consensus 243 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~en~~a~ 322 (346)
T PRK10625 243 GKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLKTNIESL 322 (346)
T ss_pred CCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHHHHHhhc
Confidence 10 0 0 0000 0 025788999999999999999876 599999999999999999
Q ss_pred CCCCCHHHHHHHHcccc
Q psy15065 261 DFELSQEDMDTLDGLDA 277 (773)
Q Consensus 261 ~~~Lt~e~~~~L~~~~~ 277 (773)
+++|+++++++|+++..
T Consensus 323 ~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 323 HLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 99999999999999864
No 24
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=3.6e-43 Score=375.67 Aligned_cols=253 Identities=14% Similarity=0.148 Sum_probs=209.0
Q ss_pred CcccCccceeccccC--------------cchHHHHHHHHHHcCCCeEecCCCCC-CHHHHHHHHHhhhhcCCCCCCCeE
Q psy15065 426 GLKFPIFGLGTWKSK--------------KGEVKQAVGYAIDIGYRHIDCAHVYE-NEDEVGDAIAQKLKDNVVKREDLY 490 (773)
Q Consensus 426 gl~vs~lglGt~~~~--------------~~~~~~~l~~Ale~Gin~fDTA~~Yg-sE~~lG~~l~~~~~~~~~~R~~v~ 490 (773)
|++||+||||||+++ .+++.++|+.|+++|||+||||+.|| +|..+|++|++ ..|++++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~------~~~~~~~ 75 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPR------PVPFRVT 75 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhcc------CCceEee
Confidence 678999999998764 35689999999999999999999999 69999999964 1346789
Q ss_pred EEecCCCCCCChhhHHHHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhccccccccCCCCccchhhhhhc
Q psy15065 491 ITSKLWNTFHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHWPQAYKVSNDFPCAVTREMAF 570 (773)
Q Consensus 491 I~TK~~~~~~~~~~i~~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~p~~~~~~~~~~~~~~~~~~~ 570 (773)
|+||.. ..+++.+++++++||+|||+||||+|++|||+...
T Consensus 76 i~tk~~--~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~------------------------------------- 116 (292)
T PRK14863 76 LSTVRA--DRGPDFVEAEARASLRRMGVERADAILVHSPTELF------------------------------------- 116 (292)
T ss_pred cccccc--cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhc-------------------------------------
Confidence 999853 45688999999999999999999999999985210
Q ss_pred ccCCCCCCCCCCCCCcCCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCCceeeeeccCCcCCh
Q psy15065 571 RLSPHIEGDTLFPADANGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQ 650 (773)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~ 650 (773)
.....++|++|++|+++||||+||||||+++++.++... .++.++|++||++.++
T Consensus 117 -----------------------~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~--~~~~~~Q~~~n~l~~~ 171 (292)
T PRK14863 117 -----------------------GPHGAALWERLQALKDQGLFAKIGVSAHASDDPVGVARR--FKPDILQAPASLLDQR 171 (292)
T ss_pred -----------------------CcchHHHHHHHHHHHHcCCcceEeeeccCHHHHHHHHhc--CCCCEEEecCCccccc
Confidence 001247899999999999999999999999999887654 4788999999999985
Q ss_pred ---HHHHHHHHhcCceEEEecCCCCCCCCCCCCCCCCC-----CCcHHHHHHHHHhCCCHHHHHHHHHHhCCcE--EeeC
Q psy15065 651 ---HKLKQWCEERQILITAYSPLGSPDRPWAKPGDPSL-----LDDPKIKEIAAKYNKTSAQILIKYQVQQGNI--CIPK 720 (773)
Q Consensus 651 ---~~l~~~~~~~gI~via~spL~~g~~~~~~~~~~~~-----~~~~~l~~ia~~~g~s~aqlaL~w~l~~~~v--~i~G 720 (773)
.+++++|+++||++++|+||++|.+.......+.. .....+.+++.++++|++|+||+|+++++.| +|+|
T Consensus 172 ~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G 251 (292)
T PRK14863 172 LLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDRVPAQLKGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVG 251 (292)
T ss_pred ccccchHHHHHhCCCEEEEechhhCccccCCcccCccchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEe
Confidence 35999999999999999999998764221100111 1123466788888999999999999999865 5999
Q ss_pred CCCHHHHHHhhcccccccCHHHHHHHHc
Q psy15065 721 SVTPSRIEENAQIFDFELAPEDIQTIDS 748 (773)
Q Consensus 721 ~~~~~~l~enl~a~~~~Lt~e~~~~I~~ 748 (773)
+++++|+++|+++.+.+++++.+++|..
T Consensus 252 ~~~~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 252 VNSAAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred cCCHHHHHHHHHHHhcCCCccchhhccC
Confidence 9999999999999998999988877754
No 25
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3e-42 Score=368.53 Aligned_cols=243 Identities=34% Similarity=0.546 Sum_probs=201.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEcCCCC---CCHHHHHHHHHhhHhcCCCCCCcEEEEecc----CCCCCCCHHHHHHHH
Q psy15065 6 QSLEREVYEAVCHAIDLGYRHFDCAYYY---QNEGQIGEAIQDKISQGVITREDIFITTKL----WITFYSSPDLIRKCL 78 (773)
Q Consensus 6 ~~~~~~a~~~l~~Al~~Gin~iDTA~~Y---g~E~~iG~aL~~~~~~~~~~R~~v~I~TK~----~~~~~~~~~~i~~~l 78 (773)
..+++++.++|+.|++.|||+||||+.| .+|..+|++|++ ...+|++++|+||+ ......+++.+++++
T Consensus 13 ~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~----~~~~r~~~~i~tK~~~~~~~~~~~~~~~i~~~~ 88 (283)
T PF00248_consen 13 RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRK----SRVPRDDIFISTKVYGDGKPEPDYSPDSIRESL 88 (283)
T ss_dssp TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHH----TSSTGGGSEEEEEEESSSSTGGGSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccc----ccccccccccccccccccccccccccccccccc
Confidence 6789999999999999999999999999 369999999997 24689999999999 223346899999999
Q ss_pred HHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCC-HHHHHHHHHHHHHcCCcceEeccCCCHHHHHHHH
Q psy15065 79 QESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVD-YVDVWKTMECLVDEGLARSIGVSNFNTKQLETLL 157 (773)
Q Consensus 79 e~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~-~~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~~~ 157 (773)
++||+|||+||||+|++||| +.... ..++|++|++|+++||||+||||||+++.++++.
T Consensus 89 ~~sL~~L~~d~iDl~~lH~~--------------------~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~ 148 (283)
T PF00248_consen 89 ERSLERLGTDYIDLLLLHWP--------------------DPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAAL 148 (283)
T ss_dssp HHHHHHHTSSSEEEEEESSS--------------------STTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHH
T ss_pred ccccccccccchhccccccc--------------------cccccccchhhhhhhhcccccccccccccccccccccccc
Confidence 99999999999999999998 33445 8999999999999999999999999999999997
Q ss_pred HhcCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCC--C--CCC-------CCChHHHHHH
Q psy15065 158 GVARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRA--K--VPF-------VLEDQTVKDI 226 (773)
Q Consensus 158 ~~a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~--~--~~~-------~~~~~~l~~i 226 (773)
....++|+++|++||++.+.. ..+++++|+++||++++|+||++|...... . .+. ....+.+.++
T Consensus 149 ~~~~~~~~~~q~~~n~~~~~~----~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 224 (283)
T PF00248_consen 149 KIGSIPPDVVQINYNLLNRRE----EEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRDAQELADALREL 224 (283)
T ss_dssp TCTSS-ESEEEEE-BTTBHBG----GHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSSTHGGGHHHHHHH
T ss_pred ccccccccccccccccccccc----cccccccccccccccccccccccCccccccccCCCcccccccchhhhhhhhhhhh
Confidence 777899999999999872322 789999999999999999999987321110 0 000 1345789999
Q ss_pred HHHhCCCHHHHhHhCc--------ccCCCCCHHHHHHHhcccCCCCCHHHHHHHHccc
Q psy15065 227 ASRYDKTPAQIQLGNI--------TVPKSVTKSRLEENRDIFDFELSQEDMDTLDGLD 276 (773)
Q Consensus 227 A~~~g~s~aqvAL~~v--------vi~g~~~~~ql~enl~a~~~~Lt~e~~~~L~~~~ 276 (773)
|+++|+|++|+||+|+ +|+|+++++|++||+++++++||++++++|+++.
T Consensus 225 a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 225 AEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 9999999999999876 8999999999999999999999999999999863
No 26
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.5e-41 Score=363.82 Aligned_cols=232 Identities=23% Similarity=0.309 Sum_probs=197.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCCCCCC---HHHHHHHHHhhHhcCCCCCCcEEEEeccCCC--------CCCCHHHHHH
Q psy15065 8 LEREVYEAVCHAIDLGYRHFDCAYYYQN---EGQIGEAIQDKISQGVITREDIFITTKLWIT--------FYSSPDLIRK 76 (773)
Q Consensus 8 ~~~~a~~~l~~Al~~Gin~iDTA~~Yg~---E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~--------~~~~~~~i~~ 76 (773)
+++++.++|+.|+++|||+||||+.||+ |..+|++++. .|+++||+||++.. ...+++.+++
T Consensus 38 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-------~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~ 110 (290)
T PRK10376 38 DRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-------YPDDLTIVTKVGARRGEDGSWLPAFSPAELRR 110 (290)
T ss_pred CHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-------CCCeEEEEeeecccCCCCCccCCCCCHHHHHH
Confidence 5688999999999999999999999984 7778888753 38999999998531 2357899999
Q ss_pred HHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCHHHHHHH
Q psy15065 77 CLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQLETL 156 (773)
Q Consensus 77 ~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~~ 156 (773)
++++||+||||||||+|++||+... .+....++.++|++|++|+++||||+||||||+.++++++
T Consensus 111 ~~e~SL~rL~td~iDl~~~H~~~~~---------------h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~ 175 (290)
T PRK10376 111 AVHDNLRNLGLDVLDVVNLRLMGDG---------------HGPAEGSIEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEA 175 (290)
T ss_pred HHHHHHHHhCCCeEEEEEEeccCCC---------------CCCCCCCHHHHHHHHHHHHHCCceeEEEecCCCHHHHHHH
Confidence 9999999999999999999985210 0112245789999999999999999999999999999998
Q ss_pred HHhcCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHH
Q psy15065 157 LGVARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDIASRYDKTPAQ 236 (773)
Q Consensus 157 ~~~a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~~l~~iA~~~g~s~aq 236 (773)
.+.+ ++.++|++||++.+ . ..+++++|+++||++++|+||+++. ....+.+.++|+++|+|++|
T Consensus 176 ~~~~--~~~~~q~~~~~~~~-~----~~~~~~~~~~~gi~v~a~~pL~g~~---------~~~~~~l~~ia~~~~~t~aq 239 (290)
T PRK10376 176 RKIA--EIVCVQNHYNLAHR-A----DDALIDALARDGIAYVPFFPLGGFT---------PLQSSTLSDVAASLGATPMQ 239 (290)
T ss_pred HhhC--CeEEEecccCCCcC-C----hHHHHHHHHHcCCEEEEeecCCCCC---------hhhhHHHHHHHHHhCCCHHH
Confidence 8765 45788999998643 2 3579999999999999999997431 11247899999999999999
Q ss_pred HhHhCc--------ccCCCCCHHHHHHHhcccCCCCCHHHHHHHHcccc
Q psy15065 237 IQLGNI--------TVPKSVTKSRLEENRDIFDFELSQEDMDTLDGLDA 277 (773)
Q Consensus 237 vAL~~v--------vi~g~~~~~ql~enl~a~~~~Lt~e~~~~L~~~~~ 277 (773)
+||+|+ +|+|+++++|+++|++++++.|+++++++|+++.+
T Consensus 240 ~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 240 VALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred HHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 999876 69999999999999999999999999999998754
No 27
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=8.5e-41 Score=362.31 Aligned_cols=246 Identities=19% Similarity=0.216 Sum_probs=200.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCCC---CHHHHHHHHHhhHhcCCCCCCcEEEEeccCCC---CCCCHHHHHHHHHH
Q psy15065 7 SLEREVYEAVCHAIDLGYRHFDCAYYYQ---NEGQIGEAIQDKISQGVITREDIFITTKLWIT---FYSSPDLIRKCLQE 80 (773)
Q Consensus 7 ~~~~~a~~~l~~Al~~Gin~iDTA~~Yg---~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~---~~~~~~~i~~~le~ 80 (773)
.+++++.++|++|+++|||+||||+.|| +|..+|++|++. +.+|+++||+||++.. ...+++.+++++++
T Consensus 28 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~----~~~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~ 103 (314)
T PLN02587 28 VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL----GIPREKYVVSTKCGRYGEGFDFSAERVTKSVDE 103 (314)
T ss_pred CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC----CCCcceEEEEeccccCCCCCCCCHHHHHHHHHH
Confidence 5788999999999999999999999997 499999999863 2469999999999742 23579999999999
Q ss_pred HHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCHHHHHHHHHhc
Q psy15065 81 SLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVA 160 (773)
Q Consensus 81 SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~~~~~a 160 (773)
||+||||||||+|++|||... +...+++++|++|++|+++||||+||||||++++++.+....
T Consensus 104 SL~rL~~d~iDl~~lH~~~~~-----------------~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~ 166 (314)
T PLN02587 104 SLARLQLDYVDILHCHDIEFG-----------------SLDQIVNETIPALQKLKESGKVRFIGITGLPLAIFTYVLDRV 166 (314)
T ss_pred HHHHhCCCCeeEEEecCCCCc-----------------chhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHhh
Confidence 999999999999999998310 123456799999999999999999999999999888776543
Q ss_pred ---CCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCC-C------hHHHHHHHHHh
Q psy15065 161 ---RIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVL-E------DQTVKDIASRY 230 (773)
Q Consensus 161 ---~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~-~------~~~l~~iA~~~ 230 (773)
.+.++.+|+.||++.+ . ..+++++|+++||++++||||++|....+....... . .+.++++|+++
T Consensus 167 ~~~~~~~~~~~~~~~l~~~-~----~~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 241 (314)
T PLN02587 167 PPGTVDVILSYCHYSLNDS-S----LEDLLPYLKSKGVGVISASPLAMGLLTENGPPEWHPAPPELKSACAAAATHCKEK 241 (314)
T ss_pred hcCCCCeEEeccccCcchh-h----HHHHHHHHHHcCceEEEechhhccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 2466778899987532 2 358999999999999999999987322111000000 0 13577899999
Q ss_pred CCCHHHHhHhCc--------ccCCCCCHHHHHHHhcccC----CCCCHHHHHHHHccccC
Q psy15065 231 DKTPAQIQLGNI--------TVPKSVTKSRLEENRDIFD----FELSQEDMDTLDGLDAN 278 (773)
Q Consensus 231 g~s~aqvAL~~v--------vi~g~~~~~ql~enl~a~~----~~Lt~e~~~~L~~~~~~ 278 (773)
|+|++|+||+|+ +|+|+++++||++|+++++ ++|+++++++|+++...
T Consensus 242 ~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~~ 301 (314)
T PLN02587 242 GKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILAP 301 (314)
T ss_pred CCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhcc
Confidence 999999999876 6999999999999999976 37999999999988754
No 28
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=3.1e-40 Score=353.33 Aligned_cols=245 Identities=37% Similarity=0.557 Sum_probs=209.4
Q ss_pred cccccC-----CHHHHHHHHHHHHHcCCCEEEcCCCCC---CHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCC----CC
Q psy15065 2 YIMFQS-----LEREVYEAVCHAIDLGYRHFDCAYYYQ---NEGQIGEAIQDKISQGVITREDIFITTKLWITF----YS 69 (773)
Q Consensus 2 ~g~~~~-----~~~~a~~~l~~Al~~Gin~iDTA~~Yg---~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~----~~ 69 (773)
+|+|.. +.+++.++++.|++.|||+||||+.|| +|..+|++|++. ..|+++||+||++... ..
T Consensus 16 ~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~-----~~R~~~~i~tK~~~~~~~~~~~ 90 (285)
T cd06660 16 LGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER-----GPREEVFIATKVGPRPGDGRDL 90 (285)
T ss_pred eeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc-----CCcCcEEEEeeecCCCCCCCCC
Confidence 366654 568999999999999999999999998 899999999974 2599999999998653 24
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCC-CHHHHHHHHHHHHHcCCcceEeccCC
Q psy15065 70 SPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSV-DYVDVWKTMECLVDEGLARSIGVSNF 148 (773)
Q Consensus 70 ~~~~i~~~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~-~~~e~~~aL~~L~~~GkIr~iGvSn~ 148 (773)
+++.+++++++||+|||+||||+|+||||.. .. ...++|++|++|+++||||+||||||
T Consensus 91 ~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~--------------------~~~~~~~~~~~l~~l~~~G~ir~iGvS~~ 150 (285)
T cd06660 91 SPEHIRRAVEESLKRLGTDYIDLYLLHWPDP--------------------DTPDIEETLRALEELVKEGKIRAIGVSNF 150 (285)
T ss_pred CHHHHHHHHHHHHHHhCCCceeEEEecCCCC--------------------CCCCHHHHHHHHHHHHHcCCccEEEeeCC
Confidence 7999999999999999999999999999832 22 47999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCC-CC---CCChHHHH
Q psy15065 149 NTKQLETLLGVARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKV-PF---VLEDQTVK 224 (773)
Q Consensus 149 ~~~~l~~~~~~a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~-~~---~~~~~~l~ 224 (773)
+.+.+.+++..+..+|+++|++||++.... +.+++++|+++||++++|+||++|........ +. ......+.
T Consensus 151 ~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~----~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~~~~~~~~~ 226 (285)
T cd06660 151 SAEQLEEALAAAGVPPAVNQVEYNLLDRQA----EEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGDLLEALK 226 (285)
T ss_pred CHHHHHHHHHhhCCCceEEecccCcccCch----HHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCChhhHHHHHH
Confidence 999999999988889999999999874432 34799999999999999999998742211110 00 01136788
Q ss_pred HHHHHhCCCHHHHhHhCc--------ccCCCCCHHHHHHHhcccCCCCCHHHHHHHHcc
Q psy15065 225 DIASRYDKTPAQIQLGNI--------TVPKSVTKSRLEENRDIFDFELSQEDMDTLDGL 275 (773)
Q Consensus 225 ~iA~~~g~s~aqvAL~~v--------vi~g~~~~~ql~enl~a~~~~Lt~e~~~~L~~~ 275 (773)
.+|+++++|++|+|++|+ +|+|+++++|+++|+++..++|++++++.|+++
T Consensus 227 ~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 227 EIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred HHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 999999999999999865 799999999999999999999999999999863
No 29
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=321.03 Aligned_cols=245 Identities=26% Similarity=0.340 Sum_probs=211.7
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEcCCCCCC---HHHHHHHHHhhHhcCCCCCCcEEEEeccCC-----------CCCCC
Q psy15065 5 FQSLEREVYEAVCHAIDLGYRHFDCAYYYQN---EGQIGEAIQDKISQGVITREDIFITTKLWI-----------TFYSS 70 (773)
Q Consensus 5 ~~~~~~~a~~~l~~Al~~Gin~iDTA~~Yg~---E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~-----------~~~~~ 70 (773)
|..++.++...++.|++.|||+||-|++||+ |...|++|+-. ..-||++.|.|||+. .++.+
T Consensus 26 ~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~----p~lRekieivsKCGI~~~s~~~~~~~hydts 101 (298)
T COG4989 26 WNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA----PGLREKIEIVSKCGIRLPSREEPRIGHYDTS 101 (298)
T ss_pred ccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC----hhhhhheEeeeccccccccccccccccccCc
Confidence 3457789999999999999999999999985 89999998854 457999999999974 24578
Q ss_pred HHHHHHHHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCH
Q psy15065 71 PDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNT 150 (773)
Q Consensus 71 ~~~i~~~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~ 150 (773)
.++|..++|+||+||+|||||+++||.| |+..+.+|+.+|+..|+++||||+.|||||++
T Consensus 102 ~~HI~~SVe~SL~~L~tDylD~LLiHRP--------------------DpLmd~eeVAeAf~~L~~sGKVr~fGVSNf~p 161 (298)
T COG4989 102 KEHIIKSVEQSLINLKTDYLDLLLIHRP--------------------DPLMDAEEVAEAFTHLHKSGKVRHFGVSNFNP 161 (298)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhccCC--------------------cccCCHHHHHHHHHHHHhcCCeeeeecCCCCH
Confidence 9999999999999999999999999999 67778899999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChHHHHHHHHHh
Q psy15065 151 KQLETLLGVARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDIASRY 230 (773)
Q Consensus 151 ~~l~~~~~~a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~~l~~iA~~~ 230 (773)
.+++-+.+....+.+.||++.|.+.. + ...++.+++|+.+.|.++|||||++|.- +.....+..-..++..||.++
T Consensus 162 ~Q~~LL~s~l~~~LvtNQlelS~~~~--~-~~~DGtLd~~q~~~v~pmaWSpl~gG~~-F~g~~~~q~l~~~l~~ia~e~ 237 (298)
T COG4989 162 AQFELLQSRLPFTLVTNQLELSPLHT--P-MLLDGTLDYCQQLRVRPMAWSPLGGGGL-FLGDDKFQRLRKVLDRIAEEY 237 (298)
T ss_pred HHHHHHHHhccchhhhcceeeccccc--c-ccccchHHHHHHcCCCcccccccCCCcc-ccCCcchHHHHHHHHHHHHHh
Confidence 99999999888899999999997632 2 2246699999999999999999998831 111111111246899999999
Q ss_pred C-CCHHHHhHhCc--------ccCCCCCHHHHHHHhcccCCCCCHHHHHHHHcccc
Q psy15065 231 D-KTPAQIQLGNI--------TVPKSVTKSRLEENRDIFDFELSQEDMDTLDGLDA 277 (773)
Q Consensus 231 g-~s~aqvAL~~v--------vi~g~~~~~ql~enl~a~~~~Lt~e~~~~L~~~~~ 277 (773)
| +|..+||++|+ +|+|+.++++|++.++|+++.||.+++=+|-.+..
T Consensus 238 ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~ 293 (298)
T COG4989 238 GAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAI 293 (298)
T ss_pred CcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhc
Confidence 9 79999999987 89999999999999999999999999988877653
No 30
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=6.2e-39 Score=343.07 Aligned_cols=235 Identities=18% Similarity=0.166 Sum_probs=190.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEcCCCCC-CHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHH
Q psy15065 6 QSLEREVYEAVCHAIDLGYRHFDCAYYYQ-NEGQIGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQESLDL 84 (773)
Q Consensus 6 ~~~~~~a~~~l~~Al~~Gin~iDTA~~Yg-~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~SL~r 84 (773)
..+++++.++|+.|++.||||||||+.|| +|..+|++|++ .+|++++|+||.. ..+++.+++++++||+|
T Consensus 28 ~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~------~~~~~~~i~tk~~---~~~~~~i~~~~e~SL~r 98 (292)
T PRK14863 28 RTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPR------PVPFRVTLSTVRA---DRGPDFVEAEARASLRR 98 (292)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhcc------CCceEeecccccc---cccHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999 69999999964 1356799999853 23689999999999999
Q ss_pred cCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCH-HHHHHHHHHHHHcCCcceEeccCCCHHHHHHHHHhcCCC
Q psy15065 85 LQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDY-VDVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVARIK 163 (773)
Q Consensus 85 LgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~-~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~~~~~a~~~ 163 (773)
|||||||+|++|||.. ...+. +++|++|++|+++||||+||||||+.+++.++.. ..+
T Consensus 99 Lg~d~iDl~~lH~~~~-------------------~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~--~~~ 157 (292)
T PRK14863 99 MGVERADAILVHSPTE-------------------LFGPHGAALWERLQALKDQGLFAKIGVSAHASDDPVGVAR--RFK 157 (292)
T ss_pred hCCCccCeEEEeCchh-------------------hcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHHHHHHh--cCC
Confidence 9999999999999821 11222 6899999999999999999999999999887754 357
Q ss_pred eEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCC-CCC-CC----CChHHHHHHHHHhCCCHHHH
Q psy15065 164 PVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRA-KVP-FV----LEDQTVKDIASRYDKTPAQI 237 (773)
Q Consensus 164 ~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~-~~~-~~----~~~~~l~~iA~~~g~s~aqv 237 (773)
|+++|++||++.+.. ...+++++|+++||++++||||++|...... ..+ .. .....+.+++++.++|++|+
T Consensus 158 ~~~~Q~~~n~l~~~~---~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aql 234 (292)
T PRK14863 158 PDILQAPASLLDQRL---LADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDRVPAQLKGASGRLSRVRRMIAEGRSDPLQA 234 (292)
T ss_pred CCEEEecCCcccccc---cccchHHHHHhCCCEEEEechhhCccccCCcccCccchhhhhHHHHHHHHHHHHcCCCHHHH
Confidence 899999999975432 1246899999999999999999987422110 001 11 11245667888889999999
Q ss_pred hHhCc--------ccCCCCCHHHHHHHhcccCCCCCHHHHHHHH
Q psy15065 238 QLGNI--------TVPKSVTKSRLEENRDIFDFELSQEDMDTLD 273 (773)
Q Consensus 238 AL~~v--------vi~g~~~~~ql~enl~a~~~~Lt~e~~~~L~ 273 (773)
||+|+ +|+|+++++||++|+++.+.+++++.+++|.
T Consensus 235 alaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~ 278 (292)
T PRK14863 235 ALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMA 278 (292)
T ss_pred HHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhcc
Confidence 99876 6999999999999999999999987776665
No 31
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=7.6e-38 Score=325.86 Aligned_cols=265 Identities=22% Similarity=0.348 Sum_probs=219.9
Q ss_pred cCeEEc-cCCcccCccceeccccC--------cchHHHHHHHHHHcCCCeEecCCCC--C-CHHHHHHHHHhhhhcCCCC
Q psy15065 418 FPFVTF-NNGLKFPIFGLGTWKSK--------KGEVKQAVGYAIDIGYRHIDCAHVY--E-NEDEVGDAIAQKLKDNVVK 485 (773)
Q Consensus 418 ~~~~~L-~tgl~vs~lglGt~~~~--------~~~~~~~l~~Ale~Gin~fDTA~~Y--g-sE~~lG~~l~~~~~~~~~~ 485 (773)
|.||++ +||.++|.||||||++. .+.+.++|++|++.|||+||||..| | ||..+|++|++ ..
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~------~~ 74 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKD------GY 74 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhh------cc
Confidence 679999 99999999999999763 4568899999999999999999999 6 79999999997 35
Q ss_pred CCCeEEEecCCCCC-CChhhHHHHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhccccccccCCCCccch
Q psy15065 486 REDLYITSKLWNTF-HRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHWPQAYKVSNDFPCAV 564 (773)
Q Consensus 486 R~~v~I~TK~~~~~-~~~~~i~~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~p~~~~~~~~~~~~~ 564 (773)
|++|.++||+..+. .+++.+++-++++|++||+||+|+|+||.-.. +.++
T Consensus 75 Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~---------------------------- 125 (391)
T COG1453 75 REKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWE---------------------------- 125 (391)
T ss_pred cceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHH----------------------------
Confidence 99999999997543 46789999999999999999999999996643 1111
Q ss_pred hhhhhcccCCCCCCCCCCCCCcCCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccch-HHHHHHHHHhCCCCceeeeec
Q psy15065 565 TREMAFRLSPHIEGDTLFPADANGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFN-SKQIQDILDKGTIKPVVNQVE 643 (773)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~-~~~l~~~~~~~~~~~~~~Q~~ 643 (773)
..--.+.++.+++++++||||++|+|.|+ ++.+.+++....++++..|.+
T Consensus 126 -----------------------------k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~~iv~a~~~dfvqlq~n 176 (391)
T COG1453 126 -----------------------------KIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFKEIVDAYPWDFVQLQYN 176 (391)
T ss_pred -----------------------------HHHccChHHHHHHHHhcCcEEEeeecCCCCHHHHHHHHhcCCcceEEeeee
Confidence 01112478899999999999999999985 567888888877776655555
Q ss_pred cCCcCChH--HHHHHHHhcCceEEEecCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhC--CCHHHHHHHHHHhCCcEE--
Q psy15065 644 CHPYLTQH--KLKQWCEERQILITAYSPLGSPDRPWAKPGDPSLLDDPKIKEIAAKYN--KTSAQILIKYQVQQGNIC-- 717 (773)
Q Consensus 644 ~~~~~~~~--~l~~~~~~~gI~via~spL~~g~~~~~~~~~~~~~~~~~l~~ia~~~g--~s~aqlaL~w~l~~~~v~-- 717 (773)
|-....+. +.+++|.++|++|+.++|+.+|.+....| +++.+|++.++ .||+.+|+||++++|.|.
T Consensus 177 y~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~vP--------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~v 248 (391)
T COG1453 177 YIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNVP--------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTV 248 (391)
T ss_pred eeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCCC--------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEE
Confidence 54444443 79999999999999999999987543222 48999999886 689999999999999874
Q ss_pred eeCCCCHHHHHHhhccccc---ccCHHHHHHHHccccCCc
Q psy15065 718 IPKSVTPSRIEENAQIFDF---ELAPEDIQTIDSFNRNHR 754 (773)
Q Consensus 718 i~G~~~~~~l~enl~a~~~---~Lt~e~~~~I~~l~~~~r 754 (773)
++|+++++|++||++.++. +||++|++.|+++.+..+
T Consensus 249 lsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~~ 288 (391)
T COG1453 249 LSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEIYR 288 (391)
T ss_pred ecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHH
Confidence 7799999999999998764 399999999988876544
No 32
>KOG1576|consensus
Probab=100.00 E-value=9e-38 Score=310.02 Aligned_cols=280 Identities=18% Similarity=0.234 Sum_probs=219.9
Q ss_pred ccCeEEc-cCCcccCccceecccc-------CcchHHHHHHHHHHcCCCeEecCCCCC---CHHHHHHHHHhhhhcCCCC
Q psy15065 417 NFPFVTF-NNGLKFPIFGLGTWKS-------KKGEVKQAVGYAIDIGYRHIDCAHVYE---NEDEVGDAIAQKLKDNVVK 485 (773)
Q Consensus 417 ~~~~~~L-~tgl~vs~lglGt~~~-------~~~~~~~~l~~Ale~Gin~fDTA~~Yg---sE~~lG~~l~~~~~~~~~~ 485 (773)
.|+||.| +||++||+||||+..+ +.++....|..|+..|||+||||+.|| +|..+|.++++ +|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~------vP 94 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKD------VP 94 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhh------CC
Confidence 5899999 9999999999998543 345666777779999999999999997 69999999987 79
Q ss_pred CCCeEEEecCCCC--------CCChhhHHHHHHHHHHhcCCCceeEEEeecccchhhhhhhhhhhhhhhhhccccccccC
Q psy15065 486 REDLYITSKLWNT--------FHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLYLIHWPQAYKVS 557 (773)
Q Consensus 486 R~~v~I~TK~~~~--------~~~~~~i~~~le~SL~~L~~dyiDl~~lH~p~~~~~l~~l~~d~iD~~~~h~p~~~~~~ 557 (773)
|+.+||+|||+.. +++.+.+++++++||+||++||+|++++|..+...
T Consensus 95 R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap------------------------ 150 (342)
T KOG1576|consen 95 REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAP------------------------ 150 (342)
T ss_pred hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccc------------------------
Confidence 9999999999753 57789999999999999999999999999654321
Q ss_pred CCCccchhhhhhcccCCCCCCCCCCCCCcCCCcccCCCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhC--CC
Q psy15065 558 NDFPCAVTREMAFRLSPHIEGDTLFPADANGKTLYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKG--TI 635 (773)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~--~~ 635 (773)
..+..+.|++.+|++++++||||+||||.++.+-+.++++.+ .+
T Consensus 151 ----------------------------------~ld~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~ 196 (342)
T KOG1576|consen 151 ----------------------------------NLDIVLNETLPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRL 196 (342)
T ss_pred ----------------------------------cccHHHHHHHHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCce
Confidence 123557799999999999999999999999999999999754 45
Q ss_pred CceeeeeccCCcCCh-HHHHHHHHhcCceEEEecCCCCCCCC------CCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHH
Q psy15065 636 KPVVNQVECHPYLTQ-HKLKQWCEERQILITAYSPLGSPDRP------WAKPGDPSLLDDPKIKEIAAKYNKTSAQILIK 708 (773)
Q Consensus 636 ~~~~~Q~~~~~~~~~-~~l~~~~~~~gI~via~spL~~g~~~------~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~ 708 (773)
+.+.+-.+|++.+.. -..+++.+..|++|+.-++|+.|.++ |++..+........-.++|++.|++++.+|+.
T Consensus 197 dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~ 276 (342)
T KOG1576|consen 197 DVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPASDELKEAAKAAAEYCQSRNVELGKLAMY 276 (342)
T ss_pred eeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHH
Confidence 555555666665542 36778889999999999999876433 33322211112234456788899999999999
Q ss_pred HHHhCCcE--EeeCCCCHHHHHHhhcccccccCHHHHHHHHccc-cCC-ccccccc
Q psy15065 709 YQVQQGNI--CIPKSVTPSRIEENAQIFDFELAPEDIQTIDSFN-RNH-RFLLLEW 760 (773)
Q Consensus 709 w~l~~~~v--~i~G~~~~~~l~enl~a~~~~Lt~e~~~~I~~l~-~~~-r~~~~~~ 760 (773)
|.++.+.+ +++|++|.++|+.|+++....||..+-++...+. +.. +..+.+|
T Consensus 277 Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~~~r~~~~~~kn~~W 332 (342)
T KOG1576|consen 277 YAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLRILREILKETKNEEW 332 (342)
T ss_pred HHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHHHHHHHhhhhccCCC
Confidence 99999876 4889999999999999866678873333333333 333 4566666
No 33
>KOG1576|consensus
Probab=99.97 E-value=5.6e-30 Score=254.63 Aligned_cols=232 Identities=21% Similarity=0.236 Sum_probs=182.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCCCCC---CHHHHHHHHHhhHhcCCCCCCcEEEEeccCC-------CCCCCHHHHHHH
Q psy15065 8 LEREVYEAVCHAIDLGYRHFDCAYYYQ---NEGQIGEAIQDKISQGVITREDIFITTKLWI-------TFYSSPDLIRKC 77 (773)
Q Consensus 8 ~~~~a~~~l~~Al~~Gin~iDTA~~Yg---~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~-------~~~~~~~~i~~~ 77 (773)
++++....|..|++.|||+||||+.|| +|..+|.++++ ++|+.++|+||++. .++++++.++.+
T Consensus 52 ~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~------vPR~aYyIaTKvgRy~ld~~~~FdfsadkvreS 125 (342)
T KOG1576|consen 52 DEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKD------VPREAYYIATKVGRYELDYANMFDFSADKVRES 125 (342)
T ss_pred chhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhh------CChhheeeeeeeeecccCccccccchHHHHHHH
Confidence 667788888889999999999999998 58888988886 69999999999973 267899999999
Q ss_pred HHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCHHHHHHHH
Q psy15065 78 LQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQLETLL 157 (773)
Q Consensus 78 le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~~~ 157 (773)
+++||+||++||||++++|.-+. ..+.+..+.|++.+|++|+++||||+||||.++.+.+.++.
T Consensus 126 v~rSlerLqldyvDilqiHDvef----------------ap~ld~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~a 189 (342)
T KOG1576|consen 126 VKRSLERLQLDYVDILQIHDVEF----------------APNLDIVLNETLPALEELKQEGKIRFIGITGYPLDVLTECA 189 (342)
T ss_pred HHHHHHHhCCceeEEEEeecccc----------------cccccHHHHHHHHHHHHHHhcCceeEeeecccchHHHHHHH
Confidence 99999999999999999996421 12345567899999999999999999999999999999888
Q ss_pred HhcC--CCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChHH-------HHHHHH
Q psy15065 158 GVAR--IKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQT-------VKDIAS 228 (773)
Q Consensus 158 ~~a~--~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~~-------l~~iA~ 228 (773)
+... +..+.+-.+|++.... --..+++.+.+|++|+.-++|+-|.....+..++....++ -.++|+
T Consensus 190 e~~~G~~dvvlsY~ry~l~d~t-----Ll~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPaS~Elk~~a~~aa~~Cq 264 (342)
T KOG1576|consen 190 ERGKGRLDVVLSYCRYTLNDNT-----LLRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPASDELKEAAKAAAEYCQ 264 (342)
T ss_pred hcCCCceeeehhhhhhccccHH-----HHHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 6554 3333333555543111 2356788889999999999998653222222333333333 346677
Q ss_pred HhCCCHHHHhHh--------CcccCCCCCHHHHHHHhcccCCCCCH
Q psy15065 229 RYDKTPAQIQLG--------NITVPKSVTKSRLEENRDIFDFELSQ 266 (773)
Q Consensus 229 ~~g~s~aqvAL~--------~vvi~g~~~~~ql~enl~a~~~~Lt~ 266 (773)
+.|+..+.+|+. .++++|.++.++++.|+++..-.||.
T Consensus 265 ~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 265 SRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred HcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 889999999874 23899999999999999987667777
No 34
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.97 E-value=3.8e-30 Score=268.49 Aligned_cols=239 Identities=21% Similarity=0.279 Sum_probs=194.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCC--C-CHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHH
Q psy15065 7 SLEREVYEAVCHAIDLGYRHFDCAYYY--Q-NEGQIGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQESLD 83 (773)
Q Consensus 7 ~~~~~a~~~l~~Al~~Gin~iDTA~~Y--g-~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~SL~ 83 (773)
.+++.+.++|+.|++.|||+||||..| | +|..+|++|++. .|++|.++||+....-.+++.+++-++++|+
T Consensus 31 id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~------~Rekv~LaTKlp~~~~~~~edm~r~fneqLe 104 (391)
T COG1453 31 IDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG------YREKVKLATKLPSWPVKDREDMERIFNEQLE 104 (391)
T ss_pred ccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc------ccceEEEEeecCCccccCHHHHHHHHHHHHH
Confidence 377889999999999999999999999 6 699999999974 5999999999975544578999999999999
Q ss_pred HcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCC-HHHHHHHHHhcCC
Q psy15065 84 LLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFN-TKQLETLLGVARI 162 (773)
Q Consensus 84 rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~-~~~l~~~~~~a~~ 162 (773)
+||+||+|+|+||.-.. -.|+..... ..++.+++++++||||++|+|.|+ .+.+.+++....+
T Consensus 105 kl~~Dy~D~yliH~l~~---------------e~~~k~~~~-g~~df~~kak~eGkIr~~GFSfHgs~e~~~~iv~a~~~ 168 (391)
T COG1453 105 KLGTDYIDYYLIHGLNT---------------ETWEKIERL-GVFDFLEKAKAEGKIRNAGFSFHGSTEVFKEIVDAYPW 168 (391)
T ss_pred HhCCchhhhhhhccccH---------------HHHHHHHcc-ChHHHHHHHHhcCcEEEeeecCCCCHHHHHHHHhcCCc
Confidence 99999999999997521 012222222 278999999999999999999997 5667788776554
Q ss_pred CeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChHHHHHHHHHhC--CCHHHHhHh
Q psy15065 163 KPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDIASRYD--KTPAQIQLG 240 (773)
Q Consensus 163 ~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~~l~~iA~~~g--~s~aqvAL~ 240 (773)
+.+|++||++.+.+.. ..+.+++|.++|++|+.++|+.+|... ....+.+.++.++++ .||+..|++
T Consensus 169 --dfvqlq~ny~d~~n~~--~~~~l~~A~~~~~gI~IMeP~~gG~l~-------~~vP~~~~~l~~~~~~~~sP~~wa~R 237 (391)
T COG1453 169 --DFVQLQYNYIDQKNQA--GTEGLKYAASKGLGIFIMEPLDGGGLL-------YNVPEKLEELCRPASPKRSPAEWALR 237 (391)
T ss_pred --ceEEeeeeeeccchhc--ccHHHHHHHhCCCcEEEEeeCCCCCcc-------cCCCHHHHHHHHhcCCCCCcHHHHHH
Confidence 5557777776554421 248899999999999999999988521 112468999999987 699999998
Q ss_pred Cc--------ccCCCCCHHHHHHHhcccCC---CCCHHHHHHHHccccC
Q psy15065 241 NI--------TVPKSVTKSRLEENRDIFDF---ELSQEDMDTLDGLDAN 278 (773)
Q Consensus 241 ~v--------vi~g~~~~~ql~enl~a~~~---~Lt~e~~~~L~~~~~~ 278 (773)
|+ +++|+++++|++||++.++- +||+++++-|.++.+.
T Consensus 238 ~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~ 286 (391)
T COG1453 238 YLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEI 286 (391)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHH
Confidence 65 89999999999999998754 3999999999887653
No 35
>KOG3023|consensus
Probab=97.96 E-value=1.8e-05 Score=79.14 Aligned_cols=75 Identities=23% Similarity=0.447 Sum_probs=67.5
Q ss_pred CCcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCCceeeeeccCCcCC-hHHHHHHHHhcCceEEEec
Q psy15065 594 DANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLT-QHKLKQWCEERQILITAYS 668 (773)
Q Consensus 594 ~~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~-~~~l~~~~~~~gI~via~s 668 (773)
-..+.+.|+.||+++.+|||..+|||.|++.+|+++...+.+.|..+|++..-... ..+|..||.+++|.+...|
T Consensus 152 ~e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 152 IESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecC
Confidence 35678999999999999999999999999999999999999999999998764433 5799999999999998775
No 36
>KOG3023|consensus
Probab=97.84 E-value=2.7e-05 Score=77.93 Aligned_cols=75 Identities=32% Similarity=0.486 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHcCCcceEeccCCCHHHHHHHHHhcCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEec
Q psy15065 122 VDYVDVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYS 201 (773)
Q Consensus 122 ~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~~~~~a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~s 201 (773)
..+.++|+.||+++.+|||..||||.|++.+|++++..+.++|..+|++..-..-. ..+|..+|.+++|.+...|
T Consensus 153 e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvv-----PpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 153 ESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVV-----PPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccC-----CHHHHHHhhhcceeeeecC
Confidence 34678999999999999999999999999999999999999999999887632211 4689999999999997764
No 37
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=77.92 E-value=9.7 Score=38.13 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=98.6
Q ss_pred HHHHHHHHcCCCEEEcCCCCCCHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHH-----------HH
Q psy15065 14 EAVCHAIDLGYRHFDCAYYYQNEGQIGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQE-----------SL 82 (773)
Q Consensus 14 ~~l~~Al~~Gin~iDTA~~Yg~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~-----------SL 82 (773)
++|..-++-|-+.+|-.-.. +.+-+.|++. | ++. +.....+++.+.+++.+ .|
T Consensus 5 ~~I~~~I~pgsrVLDLGCGd---G~LL~~L~~~-------k-~v~-----g~GvEid~~~v~~cv~rGv~Viq~Dld~gL 68 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGD---GELLAYLKDE-------K-QVD-----GYGVEIDPDNVAACVARGVSVIQGDLDEGL 68 (193)
T ss_pred HHHHHHcCCCCEEEecCCCc---hHHHHHHHHh-------c-CCe-----EEEEecCHHHHHHHHHcCCCEEECCHHHhH
Confidence 45666778899999976544 3344555542 1 110 01122356666666554 33
Q ss_pred HHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCHHHHHHHHHhcCC
Q psy15065 83 DLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVARI 162 (773)
Q Consensus 83 ~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~~~~~a~~ 162 (773)
....-+..|...+.. ....+....+.|+++.+-|+=--|++.||.-|...--+-..+-
T Consensus 69 ~~f~d~sFD~VIlsq----------------------tLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~Gr 126 (193)
T PF07021_consen 69 ADFPDQSFDYVILSQ----------------------TLQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGR 126 (193)
T ss_pred hhCCCCCccEEehHh----------------------HHHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCC
Confidence 444444444444431 1122334456688888999988899999999998877776666
Q ss_pred CeEEEcccchhhhhcCc-ccchHHHHHHHHhCCcEEEEeccCCCCC
Q psy15065 163 KPVTNQARYLFLIEVHP-YLTQKKMAAFCRDNDLVITAYSPLSNPT 207 (773)
Q Consensus 163 ~~~~~Q~~ysl~~~~~p-~~~~~~li~~~~~~gI~v~a~spL~~g~ 207 (773)
-|+.-+.+|....-.+. ...-.+..++|++.||.|.-..++.++.
T Consensus 127 mPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 127 MPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 67778888876421110 1234788999999999999999998754
No 38
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=72.97 E-value=48 Score=36.05 Aligned_cols=137 Identities=18% Similarity=0.132 Sum_probs=86.0
Q ss_pred HHHcCCCcccEEEEec-CCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCc-ceEeccCC---CHHHHHHH
Q psy15065 82 LDLLQMDYVNLYLMHW-PHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLA-RSIGVSNF---NTKQLETL 156 (773)
Q Consensus 82 L~rLgtDyiDl~~lH~-P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkI-r~iGvSn~---~~~~l~~~ 156 (773)
-+.+|.|+|||-+.-. |. ..+...++..+.++...+.=.+ -.|..|.. +++.++++
T Consensus 85 ~~~~GAd~Idl~~~s~dp~-------------------~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaa 145 (319)
T PRK04452 85 VEEYGADMITLHLISTDPN-------------------GKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKV 145 (319)
T ss_pred HHHhCCCEEEEECCCCCcc-------------------cccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHH
Confidence 3578999999754321 10 0122344555555555443222 23666633 78999999
Q ss_pred HHhcC-CCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChHHHHHHHHHhCCCHH
Q psy15065 157 LGVAR-IKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDIASRYDKTPA 235 (773)
Q Consensus 157 ~~~a~-~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~~l~~iA~~~g~s~a 235 (773)
++.++ -++..+-... +. -+.+.+.|+++|..+++.+|.. +.....+...+.++|+.+.
T Consensus 146 le~~~g~~pLInSat~----en-----~~~i~~lA~~y~~~Vva~s~~D------------ln~ak~L~~~l~~~Gi~~e 204 (319)
T PRK04452 146 AEAAEGERCLLGSAEE----DN-----YKKIAAAAMAYGHAVIAWSPLD------------INLAKQLNILLTELGVPRE 204 (319)
T ss_pred HHHhCCCCCEEEECCH----HH-----HHHHHHHHHHhCCeEEEEcHHH------------HHHHHHHHHHHHHcCCCHH
Confidence 99876 4466665332 11 3578999999999999998653 1223466677779999999
Q ss_pred HHhHhCcccCCCCCHHHHHHHhc
Q psy15065 236 QIQLGNITVPKSVTKSRLEENRD 258 (773)
Q Consensus 236 qvAL~~vvi~g~~~~~ql~enl~ 258 (773)
.|-+--.+.+=+...++.-+++.
T Consensus 205 dIviDP~~~~lg~g~e~~~~~~e 227 (319)
T PRK04452 205 RIVMDPTTGALGYGIEYSYSVME 227 (319)
T ss_pred HEEEeCCcccccCCHHHHHHHHH
Confidence 98776555444556666655554
No 39
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=72.38 E-value=23 Score=35.49 Aligned_cols=74 Identities=19% Similarity=0.134 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCCceeeeeccCCcCCh-------HHHHHHHHhcCceEEEecCCCCC
Q psy15065 601 WLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQ-------HKLKQWCEERQILITAYSPLGSP 673 (773)
Q Consensus 601 ~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~-------~~l~~~~~~~gI~via~spL~~g 673 (773)
.+.|+++.+-|+=.-|++.||.-+....-+-..+--|+.-..+|.-++.. .+..++|++.||.+.-..++..+
T Consensus 92 ~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 92 DEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGG 171 (193)
T ss_pred HHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence 44588889999988899999999998877774444566677777766653 68999999999999999999876
Q ss_pred C
Q psy15065 674 D 674 (773)
Q Consensus 674 ~ 674 (773)
.
T Consensus 172 ~ 172 (193)
T PF07021_consen 172 R 172 (193)
T ss_pred C
Confidence 4
No 40
>PRK07534 methionine synthase I; Validated
Probab=71.84 E-value=1.6e+02 Score=32.35 Aligned_cols=93 Identities=13% Similarity=0.071 Sum_probs=51.6
Q ss_pred ccccCcchHH-HHHHHHHHcCCCeEecCCCCCC---------HHHHHHHHHhhhh---cC-CCCCCCeEEEecCCCCC--
Q psy15065 436 TWKSKKGEVK-QAVGYAIDIGYRHIDCAHVYEN---------EDEVGDAIAQKLK---DN-VVKREDLYITSKLWNTF-- 499 (773)
Q Consensus 436 t~~~~~~~~~-~~l~~Ale~Gin~fDTA~~Ygs---------E~~lG~~l~~~~~---~~-~~~R~~v~I~TK~~~~~-- 499 (773)
.|.+..-+.. ++=...+++|-+.+=|.....+ +..+.+..+.... +. .....+++|+.-+++..
T Consensus 38 lwsi~~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~ 117 (336)
T PRK07534 38 LWNEDHPDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEI 117 (336)
T ss_pred HhcccCHHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCccc
Confidence 4556544444 4444557999999987654322 2222222222111 00 00123578888887643
Q ss_pred ------CChhhHHHHHHHHHHhcCCCceeEEEeec
Q psy15065 500 ------HRPDLVKPALQKTLQNLKLDYLDLYLIHW 528 (773)
Q Consensus 500 ------~~~~~i~~~le~SL~~L~~dyiDl~~lH~ 528 (773)
.+.+.+......-++.|--.-+|++++..
T Consensus 118 l~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET 152 (336)
T PRK07534 118 MEPMGALTHALAVEAFHEQAEGLKAGGADVLWVET 152 (336)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 24455666666667777445589999874
No 41
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=62.53 E-value=31 Score=38.56 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEcCCCCCCHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHc--C
Q psy15065 9 EREVYEAVCHAIDLGYRHFDCAYYYQNEGQIGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQESLDLL--Q 86 (773)
Q Consensus 9 ~~~a~~~l~~Al~~Gin~iDTA~~Yg~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~SL~rL--g 86 (773)
.-....++++|++.|++++|||...-....+.+..+ +..+.+..-+|...+.+ .--.....+.+ .
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~---------~Agit~v~~~G~dPGi~----nv~a~~a~~~~~~~ 144 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAK---------KAGITAVLGCGFDPGIT----NVLAAYAAKELFDE 144 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHH---------HcCeEEEcccCcCcchH----HHHHHHHHHHhhcc
Confidence 344568999999999999999987765322222222 34466666665444332 22222233334 5
Q ss_pred CCcccEEEEecCC
Q psy15065 87 MDYVNLYLMHWPH 99 (773)
Q Consensus 87 tDyiDl~~lH~P~ 99 (773)
+++||+|..+.|.
T Consensus 145 i~si~iy~g~~g~ 157 (389)
T COG1748 145 IESIDIYVGGLGE 157 (389)
T ss_pred ccEEEEEEecCCC
Confidence 8999999999884
No 42
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=61.05 E-value=1.5e+02 Score=33.05 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCCceeeeeccCCcCCh-HHHHHHHHhcCceEEEecCCCCCCCCC
Q psy15065 600 TWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQ-HKLKQWCEERQILITAYSPLGSPDRPW 677 (773)
Q Consensus 600 ~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~-~~l~~~~~~~gI~via~spL~~g~~~~ 677 (773)
+.+.++.++++| |..|+-+-.-.-+...+...+ .-||+..+ ..+++.|++++|.+. ||.|.+|.
T Consensus 164 ~~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~~~--------~ENPlye~fD~lLeI~~~yDVtlS----LGDglRPG 228 (423)
T TIGR00190 164 LLEYVERLKRSG--RITGIVSRGGAILAAWMLHHH--------KENPLYKNFDYILEIAKEYDVTLS----LGDGLRPG 228 (423)
T ss_pred hHHHHHHHHhCC--CccCeecCcHHHHHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeee----ccCCcCCC
Confidence 345688899988 556766665555555554432 12444443 579999999999874 67766554
No 43
>KOG0259|consensus
Probab=59.33 E-value=1.6e+02 Score=32.77 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCCEEEcCCCCCC---HHHHHHHHHhhHhc---CCCCCCcEEEEecc
Q psy15065 10 REVYEAVCHAIDLGYRHFDCAYYYQN---EGQIGEAIQDKISQ---GVITREDIFITTKL 63 (773)
Q Consensus 10 ~~a~~~l~~Al~~Gin~iDTA~~Yg~---E~~iG~aL~~~~~~---~~~~R~~v~I~TK~ 63 (773)
.++.++|..|++.|- .+.|+. -...-+++.+++-+ ..+..+||||++-+
T Consensus 81 ~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC 135 (447)
T KOG0259|consen 81 QEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGC 135 (447)
T ss_pred HHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccc
Confidence 467788888888884 678863 12223444444322 45778999999876
No 44
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=56.90 E-value=2.1e+02 Score=32.24 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCCceeeeeccCCcCCh-HHHHHHHHhcCceEEEecCCCCCCCCCC
Q psy15065 601 WLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQ-HKLKQWCEERQILITAYSPLGSPDRPWA 678 (773)
Q Consensus 601 ~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~-~~l~~~~~~~gI~via~spL~~g~~~~~ 678 (773)
.+.++.++++| |..|+-+-.-.-+...+...+ .-||+... ..+++.|++++|.+. ||.|.+|..
T Consensus 168 ~~~~~~~~~~~--R~~giVSRGGs~~~~WM~~n~--------~ENPlye~fD~lLeI~~~yDVtlS----LGDglRPG~ 232 (431)
T PRK13352 168 RETLERLKKSG--RIMGIVSRGGSFLAAWMLHNN--------KENPLYEHFDYLLEILKEYDVTLS----LGDGLRPGC 232 (431)
T ss_pred HHHHHHHHhcC--CccCeecCCHHHHHHHHHHcC--------CcCchHHHHHHHHHHHHHhCeeee----ccCCcCCCc
Confidence 45688888888 556666655555555544332 12444443 689999999999874 677665543
No 45
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=52.60 E-value=2e+02 Score=29.16 Aligned_cols=106 Identities=9% Similarity=0.022 Sum_probs=60.5
Q ss_pred eEeccCCCHHHHHHHHHhcCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChH
Q psy15065 142 SIGVSNFNTKQLETLLGVARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQ 221 (773)
Q Consensus 142 ~iGvSn~~~~~l~~~~~~a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~ 221 (773)
-+-|=++.++.++++++. +.+++.+...+.. ..++++.++++|..++++---+.+.+..........-..
T Consensus 74 plSIDT~~~~v~~~aL~~-g~~~ind~~~~~~---------~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~ 143 (210)
T PF00809_consen 74 PLSIDTFNPEVAEAALKA-GADIINDISGFED---------DPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAE 143 (210)
T ss_dssp EEEEEESSHHHHHHHHHH-TSSEEEETTTTSS---------STTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHH
T ss_pred EEEEECCCHHHHHHHHHc-CcceEEecccccc---------cchhhhhhhcCCCEEEEEecccccccccccchhhhhHHH
Confidence 455557889999999998 7777766532221 467999999999999988665432211100000001112
Q ss_pred HHHHH-------HHHhCCCHHHHhHhCcccCCCCCHHHHHHHhc
Q psy15065 222 TVKDI-------ASRYDKTPAQIQLGNITVPKSVTKSRLEENRD 258 (773)
Q Consensus 222 ~l~~i-------A~~~g~s~aqvAL~~vvi~g~~~~~ql~enl~ 258 (773)
.+.+. +.+.|++..++.+--.+-+ +++.+|-.+-++
T Consensus 144 ~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf-~~~~~~~~~~l~ 186 (210)
T PF00809_consen 144 EIIEFLEERIEALEKAGIPRERIILDPGIGF-GKDPEQNLELLR 186 (210)
T ss_dssp HHHHHHHHHHHHHHHTT--GGGEEEETTTTS-STTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHEeeccccCc-CCCHHHHHHHHH
Confidence 23322 3337888888876544445 555655544444
No 46
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=50.28 E-value=1.1e+02 Score=32.23 Aligned_cols=67 Identities=15% Similarity=0.058 Sum_probs=48.9
Q ss_pred HHHHHHcCCeeEEec-ccchHHHHHHHHHhCCCCceeeeeccCCcCCh--HHHHHHHHhcCceEEEecCCC
Q psy15065 604 MEKLVADGLVKSIGV-SNFNSKQIQDILDKGTIKPVVNQVECHPYLTQ--HKLKQWCEERQILITAYSPLG 671 (773)
Q Consensus 604 Le~l~~~GkIr~iGv-Sn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~--~~l~~~~~~~gI~via~spL~ 671 (773)
|.+-.++|+. -+|+ .......+.+++...+++++++=.|..++..+ ..++..|+..|+..+..-|-.
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 5556666875 3443 34444567777777779999999999888775 468888899999888877654
No 47
>PRK07945 hypothetical protein; Provisional
Probab=49.72 E-value=3.9e+02 Score=29.34 Aligned_cols=196 Identities=13% Similarity=0.028 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHcCCCEEEcCCCC-------C-CHHHHHHHHHhh--HhcCCCCCCcEEEEe--ccCCCCCCCHHHHHHH
Q psy15065 10 REVYEAVCHAIDLGYRHFDCAYYY-------Q-NEGQIGEAIQDK--ISQGVITREDIFITT--KLWITFYSSPDLIRKC 77 (773)
Q Consensus 10 ~~a~~~l~~Al~~Gin~iDTA~~Y-------g-~E~~iG~aL~~~--~~~~~~~R~~v~I~T--K~~~~~~~~~~~i~~~ 77 (773)
....++++.|.+.|+..|=.+++. + +...+-+-+... +++ .-++ +-|-. =+....+...+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~--ky~~-I~Il~GiE~d~~~~g~~~~~--- 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNE--ELAP-FRILTGIEVDILDDGSLDQE--- 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHH--hcCC-ceEEEEeEecccCCCCcchh---
Confidence 457899999999999988665553 1 111121222111 110 0122 33322 2222111122222
Q ss_pred HHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccC----------
Q psy15065 78 LQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSN---------- 147 (773)
Q Consensus 78 le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn---------- 147 (773)
++.|++ .||+ +.-+|+.. + .+..+..+.|.++++.|++..+|=-.
T Consensus 185 -~~~l~~--~D~v-IgSvH~~~-------------------~--~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~ 239 (335)
T PRK07945 185 -PELLDR--LDVV-VASVHSKL-------------------R--MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGT 239 (335)
T ss_pred -HHHHHh--CCEE-EEEeecCC-------------------C--CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCC
Confidence 333443 5776 67778641 1 12345668888888889888887321
Q ss_pred -----CCHHHHHHHHHhcCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChHH
Q psy15065 148 -----FNTKQLETLLGVARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQT 222 (773)
Q Consensus 148 -----~~~~~l~~~~~~a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~~ 222 (773)
+....+.+++...++.+-+|--.. +.. +...++..|++.|+.+ ..+.-+... ..+.....
T Consensus 240 ~~~~~~~~~~i~~a~~e~g~~lEINt~~~----r~~---P~~~il~~a~e~G~~v-tigSDAH~p-------~~v~~~~~ 304 (335)
T PRK07945 240 RPESKFDAEAVFAACREHGTAVEINSRPE----RRD---PPTRLLRLALDAGCLF-SIDTDAHAP-------GQLDWLGY 304 (335)
T ss_pred CChhhcCHHHHHHHHHHhCCEEEEeCCCC----CCC---ChHHHHHHHHHcCCeE-EecCCCCCh-------hhcchHHH
Confidence 222333344444444444442111 112 2567888899888875 222222111 11222234
Q ss_pred HHHHHHHhCCCHHHHhHhCcccCCCCCHHHHHHHhc
Q psy15065 223 VKDIASRYDKTPAQIQLGNITVPKSVTKSRLEENRD 258 (773)
Q Consensus 223 l~~iA~~~g~s~aqvAL~~vvi~g~~~~~ql~enl~ 258 (773)
-.++|++.|+++.+| +-+.+.+++++.++
T Consensus 305 ~~~~a~~~g~~~~~i-------~n~~~~~~~~~~~~ 333 (335)
T PRK07945 305 GCERAEEAGVPADRI-------VNTWPADRLLAWTG 333 (335)
T ss_pred HHHHHHHcCCCHHHc-------ccCCCHHHHHHHHc
Confidence 667788888877776 34445666666554
No 48
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=49.52 E-value=1.3e+02 Score=34.31 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=66.1
Q ss_pred CCCCCHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHcCCC-----cccEEEEecCCCCCCCC
Q psy15065 31 YYYQNEGQIGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQESLDLLQMD-----YVNLYLMHWPHAFRSGG 105 (773)
Q Consensus 31 ~~Yg~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~SL~rLgtD-----yiDl~~lH~P~~~~~~~ 105 (773)
-+||.|..+-++|++..+.. +.+=++|.|=+... -+-..++...++++.+ .+.++.+|.|....
T Consensus 61 ~V~Gg~~~L~~~i~~~~~~~--~p~~I~v~~tC~~~------liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g--- 129 (428)
T cd01965 61 AVFGGEDNLIEALKNLLSRY--KPDVIGVLTTCLTE------TIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKG--- 129 (428)
T ss_pred eeECcHHHHHHHHHHHHHhc--CCCEEEEECCcchh------hcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCC---
Confidence 45788888999998876532 34457777776432 2222333344444322 35677788773210
Q ss_pred CCcccCCCCCCCCCCCCCHHHHHHHHHHH-------HHcCCcceEeccCC---CHHHHHHHHHhcCCCeEEE
Q psy15065 106 DLVPFKADGKFDFDDSVDYVDVWKTMECL-------VDEGLARSIGVSNF---NTKQLETLLGVARIKPVTN 167 (773)
Q Consensus 106 ~~~~~~~~~~~~~d~~~~~~e~~~aL~~L-------~~~GkIr~iGvSn~---~~~~l~~~~~~a~~~~~~~ 167 (773)
........++++|-+. ++.++|--||-++. +.+.+.++++..++++..+
T Consensus 130 -------------~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 130 -------------SHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred -------------cHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 1123344555555432 23456888876664 4688999999888776654
No 49
>PRK13796 GTPase YqeH; Provisional
Probab=49.14 E-value=2.3e+02 Score=31.54 Aligned_cols=123 Identities=10% Similarity=0.069 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHHHHcC---CCEEEcCCCCCCHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCC-CCCHHHHHHHHHHHH
Q psy15065 7 SLEREVYEAVCHAIDLG---YRHFDCAYYYQNEGQIGEAIQDKISQGVITREDIFITTKLWITF-YSSPDLIRKCLQESL 82 (773)
Q Consensus 7 ~~~~~a~~~l~~Al~~G---in~iDTA~~Yg~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~-~~~~~~i~~~le~SL 82 (773)
.++++..++++..-+.- +-.+|..+.-++ .-..|.+.. ..+.-++|.||.-... ....+.+...+..-.
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s---~~~~L~~~~----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~ 126 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS---WIPGLHRFV----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEA 126 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCc---hhHHHHHHh----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHH
Confidence 35556667777766555 456787665554 112233321 1356688999974321 123455666666666
Q ss_pred HHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCHHHHHHHH
Q psy15065 83 DLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQLETLL 157 (773)
Q Consensus 83 ~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~~~ 157 (773)
+.+|....|++++..- ....+.+.++.+.+..+.+.+--+|.+|..-..+--.+
T Consensus 127 k~~g~~~~~v~~vSAk---------------------~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 127 KELGLRPVDVVLISAQ---------------------KGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred HhcCCCcCcEEEEECC---------------------CCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 7778765677777642 23467888888888877788999999999987765444
No 50
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=48.41 E-value=12 Score=40.68 Aligned_cols=54 Identities=11% Similarity=0.155 Sum_probs=37.4
Q ss_pred cCCeeEEecccchHHHHHHHHHhCCCC-ceeeeeccCCcCChHHHHHHHHhcCce
Q psy15065 610 DGLVKSIGVSNFNSKQIQDILDKGTIK-PVVNQVECHPYLTQHKLKQWCEERQIL 663 (773)
Q Consensus 610 ~GkIr~iGvSn~~~~~l~~~~~~~~~~-~~~~Q~~~~~~~~~~~l~~~~~~~gI~ 663 (773)
-|+||++||-=|+++.++++.....-+ .--.|.+..+--.+..+++.+++.||.
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 499999999999999999998754322 222344444333456777777777775
No 51
>PRK08609 hypothetical protein; Provisional
Probab=48.33 E-value=3e+02 Score=32.67 Aligned_cols=186 Identities=15% Similarity=0.091 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHcCCCEEEcCCCCC--------CHHHHHHHHHhh--HhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHH
Q psy15065 11 EVYEAVCHAIDLGYRHFDCAYYYQ--------NEGQIGEAIQDK--ISQGVITREDIFITTKLWITFYSSPDLIRKCLQE 80 (773)
Q Consensus 11 ~a~~~l~~Al~~Gin~iDTA~~Yg--------~E~~iG~aL~~~--~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~ 80 (773)
...++++.|.+.|+..|=.++++. +...+-..+... +.+. ...=+|++..=+....+ ....-.+.
T Consensus 350 sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~-~~~i~Il~GiEv~i~~~----g~~d~~~~ 424 (570)
T PRK08609 350 SIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEK-YPEIDILSGIEMDILPD----GSLDYDDE 424 (570)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEEEEeecCC----cchhhcHH
Confidence 356699999999999998887752 122222222111 1110 11112333333322211 11222333
Q ss_pred HHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccC------CC--HHH
Q psy15065 81 SLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSN------FN--TKQ 152 (773)
Q Consensus 81 SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn------~~--~~~ 152 (773)
.|+. .||+ +.-+|++. ..+.+++++.+.++.+.|.+.-||=-. .. ...
T Consensus 425 ~L~~--~D~v-I~SvH~~~---------------------~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d 480 (570)
T PRK08609 425 VLAE--LDYV-IAAIHSSF---------------------SQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVN 480 (570)
T ss_pred HHHh--hCEE-EEEeecCC---------------------CCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHH
Confidence 5554 6776 77789641 123567788899999999887666332 11 223
Q ss_pred HHHHHHhcCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChHHHHHHHHHhCC
Q psy15065 153 LETLLGVARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDIASRYDK 232 (773)
Q Consensus 153 l~~~~~~a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~~l~~iA~~~g~ 232 (773)
++++++.+.-.-+++|++-+-+ +.. ....++..|.+.|+.+ +-++-+... ..+..-+.-..+|++-|.
T Consensus 481 ~~~i~~~a~~~G~~lEINa~~~-r~~---~~~~~~~~~~e~Gv~i-~igSDAH~~-------~~l~~~~~~v~~ar~~~~ 548 (570)
T PRK08609 481 IDQLIELAKETNTALELNANPN-RLD---LSAEHLKKAQEAGVKL-AINTDAHHT-------EMLDDMKYGVATARKGWI 548 (570)
T ss_pred HHHHHHHHHHhCCEEEEcCCcc-ccC---ccHHHHHHHHHcCCEE-EEECCCCCh-------hhhCcHHHHHHHHHHcCC
Confidence 3444443221113334433322 112 2567899999999864 333333221 123334566788999999
Q ss_pred CHHHH
Q psy15065 233 TPAQI 237 (773)
Q Consensus 233 s~aqv 237 (773)
++.+|
T Consensus 549 ~~~~v 553 (570)
T PRK08609 549 QKDRV 553 (570)
T ss_pred CHHHc
Confidence 88887
No 52
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=47.16 E-value=1.4e+02 Score=32.33 Aligned_cols=147 Identities=13% Similarity=0.138 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCcceEecc--------------------CCCHHHHHHHHHhc-------------------
Q psy15065 120 DSVDYVDVWKTMECLVDEGLARSIGVS--------------------NFNTKQLETLLGVA------------------- 160 (773)
Q Consensus 120 ~~~~~~e~~~aL~~L~~~GkIr~iGvS--------------------n~~~~~l~~~~~~a------------------- 160 (773)
...++.+-+..|+.+.+.| +|++|+. ++..+-++++.+..
T Consensus 103 ga~~~~~dl~~L~~~~~~G-vR~lgltwn~~N~~g~g~~~~~~~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~ 181 (313)
T COG2355 103 GAEPLGDDLDKLELFHALG-VRSLGLTWNRDNLFGDGCYERTGGGLTPFGKELVREMNELGIIIDLSHLSDKTFWDVLDL 181 (313)
T ss_pred CcccccccHHHHHHHHHhC-ceEEEeeeccCCcccCccCCCCCCCCCHHHHHHHHHHHhcCCEEEecccCCccHHHHHhc
Confidence 3446667788999999999 8988654 34444444443322
Q ss_pred -CCCeEEEcccchhhhhcCcccchHHHHHHHHhCC--cEEEEeccCCCCCCCCCCCCCCCCC-hHHHHHHHHHhCCCHHH
Q psy15065 161 -RIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDND--LVITAYSPLSNPTNPFRAKVPFVLE-DQTVKDIASRYDKTPAQ 236 (773)
Q Consensus 161 -~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~g--I~v~a~spL~~g~~~~~~~~~~~~~-~~~l~~iA~~~g~s~aq 236 (773)
+.+.+.-..+...+ -.||.+..++.++..++.| |++..+..|-.+ +. ...+.+.+ ...+..+.+..| .-.
T Consensus 182 s~~PviaSHSN~~al-~~h~RNl~D~qlkaI~~~gGvIgv~~~~~fl~~-~~--~~~atldd~v~hI~h~v~~~G--~dh 255 (313)
T COG2355 182 SKAPVVASHSNARAL-VDHPRNLSDEQLKAIAETGGVIGVNFIPAFLRP-GG--AARATLDDLVRHIDHFVELVG--IDH 255 (313)
T ss_pred cCCceEEecCCchhc-cCCCCCCCHHHHHHHHhcCCEEEEEeehhhccC-CC--CCCCCHHHHHHHHHHHHHhcC--cce
Confidence 12222223333322 3456665667777777666 677777776553 11 00011100 133444555555 345
Q ss_pred HhHh----Cccc--CCCCCHHHHHHHhcccCC-CCCHHHHHHHH
Q psy15065 237 IQLG----NITV--PKSVTKSRLEENRDIFDF-ELSQEDMDTLD 273 (773)
Q Consensus 237 vAL~----~vvi--~g~~~~~ql~enl~a~~~-~Lt~e~~~~L~ 273 (773)
|+|| +... .|..+++.+..-++++.- -+++++++.|-
T Consensus 256 VglGsDf~g~~~~p~gled~~~l~~l~~~L~~~G~~e~~i~~i~ 299 (313)
T COG2355 256 VGLGSDFDGGTGPPDGLEDVGKLPNLTAALIERGYSEEEIEKIA 299 (313)
T ss_pred eEecccccCCCCCchhhcChhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 6665 3344 477888888888887755 49999988776
No 53
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=46.43 E-value=78 Score=35.49 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHcCCCeEecCCCCCCHHHHHHHHHhhhhcCCCCCCCeEEEecCCCCCCChhhHHHHHHHHHHhc--CCCc
Q psy15065 443 EVKQAVGYAIDIGYRHIDCAHVYENEDEVGDAIAQKLKDNVVKREDLYITSKLWNTFHRPDLVKPALQKTLQNL--KLDY 520 (773)
Q Consensus 443 ~~~~~l~~Ale~Gin~fDTA~~YgsE~~lG~~l~~~~~~~~~~R~~v~I~TK~~~~~~~~~~i~~~le~SL~~L--~~dy 520 (773)
....++++|++.|++++|||.+.-....+.... .+-.+.+..-+| ++|.-..--.....+.+ .+++
T Consensus 80 ~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a---------~~Agit~v~~~G---~dPGi~nv~a~~a~~~~~~~i~s 147 (389)
T COG1748 80 VDLTILKACIKTGVDYVDTSYYEEPPWKLDEEA---------KKAGITAVLGCG---FDPGITNVLAAYAAKELFDEIES 147 (389)
T ss_pred hhHHHHHHHHHhCCCEEEcccCCchhhhhhHHH---------HHcCeEEEcccC---cCcchHHHHHHHHHHHhhccccE
Confidence 345899999999999999998875532222222 233444555543 33333222233333333 5899
Q ss_pred eeEEEeecccch
Q psy15065 521 LDLYLIHWPQAY 532 (773)
Q Consensus 521 iDl~~lH~p~~~ 532 (773)
||+|..+.|+..
T Consensus 148 i~iy~g~~g~~~ 159 (389)
T COG1748 148 IDIYVGGLGEHG 159 (389)
T ss_pred EEEEEecCCCCC
Confidence 999999988754
No 54
>PLN02489 homocysteine S-methyltransferase
Probab=46.37 E-value=4.4e+02 Score=28.97 Aligned_cols=43 Identities=14% Similarity=0.016 Sum_probs=28.4
Q ss_pred CCCeEEEecCCCCC----------------CChhhHHHHHHHHHHhcCCCceeEEEeec
Q psy15065 486 REDLYITSKLWNTF----------------HRPDLVKPALQKTLQNLKLDYLDLYLIHW 528 (773)
Q Consensus 486 R~~v~I~TK~~~~~----------------~~~~~i~~~le~SL~~L~~dyiDl~~lH~ 528 (773)
+.+++|+.-+++.. .+.+.++.....-++.|--.-+|++++..
T Consensus 130 ~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET 188 (335)
T PLN02489 130 YRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFET 188 (335)
T ss_pred CCCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 34678888886542 33466666666666666445689988874
No 55
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=45.42 E-value=4.5e+02 Score=28.81 Aligned_cols=151 Identities=13% Similarity=0.074 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcC--CCCC----CHH--HHHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHH
Q psy15065 8 LEREVYEAVCHAIDLGYRHFDCA--YYYQ----NEG--QIGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQ 79 (773)
Q Consensus 8 ~~~~a~~~l~~Al~~Gin~iDTA--~~Yg----~E~--~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le 79 (773)
+.++..+.++.+.+.|++.|-.- ..|. -+. .+=+++++.+ -+++.|.-..... .+.+...+-
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~------g~~~~l~vDaN~~--~~~~~a~~~-- 208 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAV------GPDVDLMVDANGR--WDLAEAIRL-- 208 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhh------CCCCEEEEECCCC--CCHHHHHHH--
Confidence 46777788888889999988643 2231 011 1112333321 2355566665322 344433322
Q ss_pred HHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-eEeccCCCHHHHHHHHH
Q psy15065 80 ESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLAR-SIGVSNFNTKQLETLLG 158 (773)
Q Consensus 80 ~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr-~iGvSn~~~~~l~~~~~ 158 (773)
+++|. -.++.++..|.. .+.++.+..|++.-.+. ..|=|.++.+.+.++++
T Consensus 209 --~~~l~--~~~i~~iEqP~~------------------------~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~ 260 (357)
T cd03316 209 --ARALE--EYDLFWFEEPVP------------------------PDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLE 260 (357)
T ss_pred --HHHhC--ccCCCeEcCCCC------------------------ccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHH
Confidence 23332 124556776621 01356677787775555 55666788999999987
Q ss_pred hcCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEec
Q psy15065 159 VARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYS 201 (773)
Q Consensus 159 ~a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~s 201 (773)
....+. +|+..... .-...-..+..+|+++|+.++..+
T Consensus 261 ~~~~d~--v~~k~~~~---GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 261 AGAVDI--IQPDVTKV---GGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred hCCCCE--EecCcccc---CCHHHHHHHHHHHHHcCCeEeccC
Confidence 655433 34433221 111124578999999999987655
No 56
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=45.38 E-value=2.5e+02 Score=29.78 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=21.6
Q ss_pred CCcHHHHHHHHHHHHHcCC-eeEEecc
Q psy15065 594 DANYVDTWLEMEKLVADGL-VKSIGVS 619 (773)
Q Consensus 594 ~~~~~e~~~aLe~l~~~Gk-Ir~iGvS 619 (773)
+.+.+.+.+.|..|.+.|- |-.+|+-
T Consensus 27 dP~~e~s~e~i~~L~~~GaD~iELGvP 53 (265)
T COG0159 27 DPDLETSLEIIKTLVEAGADILELGVP 53 (265)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEecCC
Confidence 4567888999999999987 8888874
No 57
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=45.14 E-value=2.1e+02 Score=30.21 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCCceeeeeccCCcCChHHHHHHHHhcCceEEEecC
Q psy15065 600 TWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQHKLKQWCEERQILITAYSP 669 (773)
Q Consensus 600 ~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~via~sp 669 (773)
....++.+++.-.+. +.+=+++++.++++++.+ ...+|-+..- ..+.++++.++++|..++.+.-
T Consensus 64 l~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G--~~iINdisg~--~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 64 VIPVLEALRGELDVL-ISVDTFRAEVARAALEAG--ADIINDVSGG--SDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred HHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhC--CCEEEeCCCC--CCChHHHHHHHHcCCCEEEECC
Confidence 333455666553443 777789999999999986 3445554333 2236899999999999998543
No 58
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=44.40 E-value=87 Score=33.47 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=77.6
Q ss_pred HHHHHHHHcCCeeEEecccchHHHHHHHHHh----C--CCCceeeeeccCCcCChHHHHHHHHhcCceEEEecCCCCCCC
Q psy15065 602 LEMEKLVADGLVKSIGVSNFNSKQIQDILDK----G--TIKPVVNQVECHPYLTQHKLKQWCEERQILITAYSPLGSPDR 675 (773)
Q Consensus 602 ~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~----~--~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~via~spL~~g~~ 675 (773)
+.++.|....++-.+-=++.+.+.+.++.+. . ..-++.+-+.+.-..++..+.+++++-++-++.-+.=
T Consensus 145 ~d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~n----- 219 (280)
T TIGR00216 145 EDLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKN----- 219 (280)
T ss_pred HHHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCC-----
Confidence 3455554456666666667777776666542 2 1123345555555566788999999988777653221
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHhCC------CHHHHHHHHHHhCCcE-EeeCCCCHHHHHHhh
Q psy15065 676 PWAKPGDPSLLDDPKIKEIAAKYNK------TSAQILIKYQVQQGNI-CIPKSVTPSRIEENA 731 (773)
Q Consensus 676 ~~~~~~~~~~~~~~~l~~ia~~~g~------s~aqlaL~w~l~~~~v-~i~G~~~~~~l~enl 731 (773)
.....+|.++|+++|. ++.++-..|+.....| +..|+|+|+.+-+.+
T Consensus 220 ---------SsNT~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eV 273 (280)
T TIGR00216 220 ---------SSNTTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEV 273 (280)
T ss_pred ---------CchHHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHH
Confidence 2234589999999884 6799999999876655 466999999875543
No 59
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=43.47 E-value=99 Score=32.30 Aligned_cols=121 Identities=13% Similarity=0.153 Sum_probs=63.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCEEEcCCCCCCHHHHHH-----------------HHHhhHhcCCCCCCcEEEEeccCCCC
Q psy15065 5 FQSLEREVYEAVCHAIDLGYRHFDCAYYYQNEGQIGE-----------------AIQDKISQGVITREDIFITTKLWITF 67 (773)
Q Consensus 5 ~~~~~~~a~~~l~~Al~~Gin~iDTA~~Yg~E~~iG~-----------------aL~~~~~~~~~~R~~v~I~TK~~~~~ 67 (773)
|..+.++-.++.+.+-+.|+.||=|...-.+=..+.+ .|+. +++ ....++|+|=..
T Consensus 51 ~el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~-~A~---tgkPvIlSTG~s--- 123 (241)
T PF03102_consen 51 LELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEY-IAK---TGKPVILSTGMS--- 123 (241)
T ss_dssp HSS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHH-HHT---T-S-EEEE-TT----
T ss_pred hcCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHH-HHH---hCCcEEEECCCC---
Confidence 3567889999999999999999977643321111100 1111 111 134577777642
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccC
Q psy15065 68 YSSPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSN 147 (773)
Q Consensus 68 ~~~~~~i~~~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn 147 (773)
+-+.|.++++.-.++-+ -|+.++|+...+.. .+-+--++.|..|++.=- --||.|.
T Consensus 124 --tl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~------------------~~e~~NL~~i~~L~~~f~-~~vG~SD 179 (241)
T PF03102_consen 124 --TLEEIERAVEVLREAGN---EDLVLLHCVSSYPT------------------PPEDVNLRVIPTLKERFG-VPVGYSD 179 (241)
T ss_dssp ---HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--------------------GGG--TTHHHHHHHHST-SEEEEEE
T ss_pred --CHHHHHHHHHHHHhcCC---CCEEEEecCCCCCC------------------ChHHcChHHHHHHHHhcC-CCEEeCC
Confidence 45667777765534433 58999999754321 111224567777776522 6779999
Q ss_pred CCHHHHHHH
Q psy15065 148 FNTKQLETL 156 (773)
Q Consensus 148 ~~~~~l~~~ 156 (773)
|+......+
T Consensus 180 Ht~g~~~~~ 188 (241)
T PF03102_consen 180 HTDGIEAPI 188 (241)
T ss_dssp -SSSSHHHH
T ss_pred CCCCcHHHH
Confidence 986543333
No 60
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=43.44 E-value=1.9e+02 Score=30.72 Aligned_cols=67 Identities=10% Similarity=-0.101 Sum_probs=47.3
Q ss_pred HHHHHHcCCeeEEecccchHHHHHHHHHhCCCCceeeeeccCCcCCh--HHHHHHHHhcCceEEEecCC
Q psy15065 604 MEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQ--HKLKQWCEERQILITAYSPL 670 (773)
Q Consensus 604 Le~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~--~~l~~~~~~~gI~via~spL 670 (773)
|.+..++|+.-.-...+.....+.+++...+++++++=.|..++..+ ..++..|+..|+..+..-|-
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~ 77 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVE 77 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCC
Confidence 55666668754333344444566677777779999999999988775 35788888889887777653
No 61
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=41.93 E-value=3.6e+02 Score=28.50 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHcCCcceEeccCCCHHHHHHHHHhcCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCC
Q psy15065 125 VDVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLS 204 (773)
Q Consensus 125 ~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~~~~~a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~ 204 (773)
+.....++.+++.-.+ -+-|=+++++.++++++...-.+.+|-+... .+ ...++++.++++|..++...--.
T Consensus 55 ~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINsIs~~--~~-----~~~~~~~l~~~~g~~vv~m~~~~ 126 (261)
T PRK07535 55 ETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINSVSAE--GE-----KLEVVLPLVKKYNAPVVALTMDD 126 (261)
T ss_pred HHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEeCCCC--Cc-----cCHHHHHHHHHhCCCEEEEecCC
Confidence 3344455555543222 3677788999999999874334555543221 00 13478999999999888754321
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHhHhCcccCCCCCHHHHHHHhc
Q psy15065 205 NPTNPFRAKVPFVLEDQTVKDIASRYDKTPAQIQLGNITVPKSVTKSRLEENRD 258 (773)
Q Consensus 205 ~g~~~~~~~~~~~~~~~~l~~iA~~~g~s~aqvAL~~vvi~g~~~~~ql~enl~ 258 (773)
.|.... ....+.....+.+.|.++|+++.++.+--.+.+-+++.++..+.++
T Consensus 127 ~g~P~t--~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~~~~~~~~l~ 178 (261)
T PRK07535 127 TGIPKD--AEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAAQDAGPEVLE 178 (261)
T ss_pred CCCCCC--HHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCChHHHHHHHH
Confidence 221000 0000111134556778999999999877655554556666655554
No 62
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=41.91 E-value=12 Score=40.83 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=34.6
Q ss_pred cCCcceEeccCCCHHHHHHHHHhcCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcE
Q psy15065 137 EGLARSIGVSNFNTKQLETLLGVARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLV 196 (773)
Q Consensus 137 ~GkIr~iGvSn~~~~~l~~~~~~a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~ 196 (773)
-|+|||+||--|+++.++++.....- -...+.+..++. .| ....+++.|++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e-~dly~~Q~~ifL--DP--~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENE-KDLYERQLDVFL--DP--HDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccH-HHHHHHHHhhhc--CC--CCHHHHHHHHHcCCc
Confidence 49999999999999999888654331 111111111111 22 256788888888874
No 63
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=41.75 E-value=2.1e+02 Score=32.58 Aligned_cols=116 Identities=10% Similarity=0.142 Sum_probs=62.2
Q ss_pred CCCCCCHHHHHHHHHhhHhcCCCCCCcEEEEeccCCC-CCCCHHHHHHHHHHHHHHcCC-CcccEEEEecCCCCCCCCCC
Q psy15065 30 AYYYQNEGQIGEAIQDKISQGVITREDIFITTKLWIT-FYSSPDLIRKCLQESLDLLQM-DYVNLYLMHWPHAFRSGGDL 107 (773)
Q Consensus 30 A~~Yg~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~-~~~~~~~i~~~le~SL~rLgt-DyiDl~~lH~P~~~~~~~~~ 107 (773)
.-+||.+..+.++|++..++. +.+=++|.|=+... -+.+ +...+++.-++... ..+.++.++.|... |
T Consensus 64 d~V~Gg~~~L~~ai~~~~~~~--~p~~I~v~ttC~~~iiGdD---i~~v~~~~~~~~~~~~~~~vi~v~tpgf~--g--- 133 (435)
T cd01974 64 AAVFGGQNNLIDGLKNAYAVY--KPDMIAVSTTCMAEVIGDD---LNAFIKNAKNKGSIPADFPVPFANTPSFV--G--- 133 (435)
T ss_pred ceEECcHHHHHHHHHHHHHhc--CCCEEEEeCCchHhhhhcc---HHHHHHHHHHhccCCCCCeEEEecCCCCc--c---
Confidence 357788889999998875532 34557777776332 1112 22222222222211 13788888887321 1
Q ss_pred cccCCCCCCCCCCCCCHHHHHHHHHH-HHH-------cCCcceEeccC--CC-HHHHHHHHHhcCCCeEE
Q psy15065 108 VPFKADGKFDFDDSVDYVDVWKTMEC-LVD-------EGLARSIGVSN--FN-TKQLETLLGVARIKPVT 166 (773)
Q Consensus 108 ~~~~~~~~~~~d~~~~~~e~~~aL~~-L~~-------~GkIr~iGvSn--~~-~~~l~~~~~~a~~~~~~ 166 (773)
+.....+.++++|-+ +.. .++|.=||-.+ .+ .+.+.++++..++++..
T Consensus 134 -----------s~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 134 -----------SHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred -----------CHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 111234445555532 222 23455665222 22 67888888888877654
No 64
>PRK05414 urocanate hydratase; Provisional
Probab=41.47 E-value=2e+02 Score=33.20 Aligned_cols=116 Identities=16% Similarity=0.065 Sum_probs=78.4
Q ss_pred HHHHHHHcCCCEEE--cCCCC---CC-------HHHHHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHH-----
Q psy15065 15 AVCHAIDLGYRHFD--CAYYY---QN-------EGQIGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKC----- 77 (773)
Q Consensus 15 ~l~~Al~~Gin~iD--TA~~Y---g~-------E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~----- 77 (773)
-++..-+.|...+- ||-.| |+ -..+..+-++.+ ++--+.++||++-+|.-.+..|..+.-+
T Consensus 117 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f--~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i 194 (556)
T PRK05414 117 HFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHF--GGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCL 194 (556)
T ss_pred HHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhc--CCCCceeEEEEecCCccccccHHHHHhcCceEE
Confidence 34555667877663 66554 33 233344444444 2335778999999876544334332211
Q ss_pred ---H--HHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCHHH
Q psy15065 78 ---L--QESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQ 152 (773)
Q Consensus 78 ---l--e~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~ 152 (773)
| .+.-+||.+.|+|.+ ..+++|+++-.++.+++|+..+||+-.--++.
T Consensus 195 ~vEvd~~ri~kR~~~gyld~~---------------------------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv 247 (556)
T PRK05414 195 AVEVDESRIDKRLRTGYLDEK---------------------------ADDLDEALALAEEAKAAGEPLSIGLLGNAADV 247 (556)
T ss_pred EEEECHHHHHHHHhCCcceeE---------------------------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHH
Confidence 2 233479999999863 23689999999999999999999999988888
Q ss_pred HHHHHHh
Q psy15065 153 LETLLGV 159 (773)
Q Consensus 153 l~~~~~~ 159 (773)
++++++.
T Consensus 248 ~~~l~~~ 254 (556)
T PRK05414 248 LPELVRR 254 (556)
T ss_pred HHHHHHc
Confidence 8888876
No 65
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=41.43 E-value=1.2e+02 Score=32.82 Aligned_cols=115 Identities=10% Similarity=0.131 Sum_probs=73.8
Q ss_pred HHHHH--HHcCCeeEEecccchHHHHHHHHHhC----CCCce--eeeeccCCcCChHHHHHHHHhcCceEEEecCCCCCC
Q psy15065 603 EMEKL--VADGLVKSIGVSNFNSKQIQDILDKG----TIKPV--VNQVECHPYLTQHKLKQWCEERQILITAYSPLGSPD 674 (773)
Q Consensus 603 aLe~l--~~~GkIr~iGvSn~~~~~l~~~~~~~----~~~~~--~~Q~~~~~~~~~~~l~~~~~~~gI~via~spL~~g~ 674 (773)
.++.| ....++-.+-=++++.+.+.++.+.- .--.+ .+-+.+.-..++..+.+++++-++-++.-++=.
T Consensus 146 e~~~l~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~S--- 222 (298)
T PRK01045 146 DVAKLEVKDPDKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNS--- 222 (298)
T ss_pred HHhhcccCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCC---
Confidence 34444 23355666666677777766665421 11111 334444444557789999999987777533222
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHhCC------CHHHHHHHHHHhCCcE-EeeCCCCHHHHHHhh
Q psy15065 675 RPWAKPGDPSLLDDPKIKEIAAKYNK------TSAQILIKYQVQQGNI-CIPKSVTPSRIEENA 731 (773)
Q Consensus 675 ~~~~~~~~~~~~~~~~l~~ia~~~g~------s~aqlaL~w~l~~~~v-~i~G~~~~~~l~enl 731 (773)
..-.+|.++|++++. ++.++-..|+.....| +..|+|+|+.+-+.+
T Consensus 223 -----------sNT~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV 275 (298)
T PRK01045 223 -----------SNSNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEV 275 (298)
T ss_pred -----------ccHHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHH
Confidence 233589999999874 6899999999766555 466999999765543
No 66
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=41.42 E-value=2e+02 Score=33.10 Aligned_cols=116 Identities=16% Similarity=0.070 Sum_probs=78.8
Q ss_pred HHHHHHHcCCCEEE--cCCCC---CC-------HHHHHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHH-----
Q psy15065 15 AVCHAIDLGYRHFD--CAYYY---QN-------EGQIGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKC----- 77 (773)
Q Consensus 15 ~l~~Al~~Gin~iD--TA~~Y---g~-------E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~----- 77 (773)
-++..-+.|...+- ||-.| |+ -..+..+-++.+ ++.-+.++||++-+|.-.+..|..+.-+
T Consensus 108 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f--~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i 185 (545)
T TIGR01228 108 HFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHF--GGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSI 185 (545)
T ss_pred HHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhc--CCCCceeEEEEeCCCccccccHHHHHHcCceEE
Confidence 34555667877663 66554 33 233444445544 2234788999999876544334333211
Q ss_pred ---H--HHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCHHH
Q psy15065 78 ---L--QESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQ 152 (773)
Q Consensus 78 ---l--e~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~ 152 (773)
+ .+.-+||.+.|+|.+ ..+++|+++-.++.+++|+..+||+-.--++.
T Consensus 186 ~vEvd~~ri~kR~~~gyld~~---------------------------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv 238 (545)
T TIGR01228 186 AVEVDESRIDKRLETKYCDEQ---------------------------TDSLDEALARAEEAKAEGKPISIGLLGNAAEV 238 (545)
T ss_pred EEEECHHHHHHHHhcCcceeE---------------------------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHH
Confidence 2 233479999999853 23689999999999999999999999988888
Q ss_pred HHHHHHh
Q psy15065 153 LETLLGV 159 (773)
Q Consensus 153 l~~~~~~ 159 (773)
++++.+.
T Consensus 239 ~~~l~~r 245 (545)
T TIGR01228 239 LPELLKR 245 (545)
T ss_pred HHHHHHc
Confidence 8888875
No 67
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=40.26 E-value=5e+02 Score=27.92 Aligned_cols=152 Identities=15% Similarity=0.094 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCCCCCCHHHH--HHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHc
Q psy15065 8 LEREVYEAVCHAIDLGYRHFDCAYYYQNEGQI--GEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQESLDLL 85 (773)
Q Consensus 8 ~~~~a~~~l~~Al~~Gin~iDTA~~Yg~E~~i--G~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~SL~rL 85 (773)
++++..+.++.+++.|++.|+.--.-..+..+ =+++++. .. ++-|.-++... .+.+.. ..+-+.|+++
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~-----~g--~~~l~vD~n~~--~~~~~A-~~~~~~l~~~ 203 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA-----AP--DARLRVDANQG--WTPEEA-VELLRELAEL 203 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh-----CC--CCeEEEeCCCC--cCHHHH-HHHHHHHHhc
Confidence 55777788888999999999864211112211 1223322 22 45566666433 234332 2233455555
Q ss_pred CCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-eEeccCCCHHHHHHHHHhcCCCe
Q psy15065 86 QMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLAR-SIGVSNFNTKQLETLLGVARIKP 164 (773)
Q Consensus 86 gtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr-~iGvSn~~~~~l~~~~~~a~~~~ 164 (773)
+ +.++-.|.. .+-++.+.+|.+...|. +.|=+-++.+.+.++++...++.
T Consensus 204 ~-----l~~iEeP~~------------------------~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~ 254 (316)
T cd03319 204 G-----VELIEQPVP------------------------AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDG 254 (316)
T ss_pred C-----CCEEECCCC------------------------CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCE
Confidence 4 444454411 11256677888877666 55666788999999888665544
Q ss_pred EEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccC
Q psy15065 165 VTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPL 203 (773)
Q Consensus 165 ~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL 203 (773)
+ |+.-+.+ .-...-..+..+|+++|+.++..+-+
T Consensus 255 v--~~~~~~~---GGi~~~~~~~~~a~~~gi~~~~~~~~ 288 (316)
T cd03319 255 I--NIKLMKT---GGLTEALRIADLARAAGLKVMVGCMV 288 (316)
T ss_pred E--EEecccc---CCHHHHHHHHHHHHHcCCCEEEECch
Confidence 4 4332221 00111357899999999999886544
No 68
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=40.01 E-value=2e+02 Score=30.15 Aligned_cols=67 Identities=10% Similarity=-0.005 Sum_probs=46.8
Q ss_pred HHHHHHcCCeeEEec-ccchHHHHHHHHHhCCCCceeeeeccCCcCCh--HHHHHHHHhcCceEEEecCCC
Q psy15065 604 MEKLVADGLVKSIGV-SNFNSKQIQDILDKGTIKPVVNQVECHPYLTQ--HKLKQWCEERQILITAYSPLG 671 (773)
Q Consensus 604 Le~l~~~GkIr~iGv-Sn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~--~~l~~~~~~~gI~via~spL~ 671 (773)
|.+-.++|+.. +|+ ++.....+.+++...+++++++=.|..++..+ ..++..|+..|+..+..-|-.
T Consensus 3 lk~~l~~g~~~-~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 3 FRQDLLARETL-IGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HHHHHHcCCce-EEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 34445557743 443 44555567777777779999999999888765 467777888888888776553
No 69
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=37.17 E-value=87 Score=33.37 Aligned_cols=123 Identities=15% Similarity=0.081 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHH--HcCCcceEeccCCCHHHHHHHHHhcCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEE
Q psy15065 122 VDYVDVWKTMECLV--DEGLARSIGVSNFNTKQLETLLGVARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITA 199 (773)
Q Consensus 122 ~~~~e~~~aL~~L~--~~GkIr~iGvSn~~~~~l~~~~~~a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a 199 (773)
..+.|..+.++.|. ..-++-++-=+.-+.+...++.+..+-++-.+|.+.+--+...-..-|+.+.+++.+-++-++.
T Consensus 140 ~~lve~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVV 219 (294)
T COG0761 140 VLLVESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVV 219 (294)
T ss_pred eEEEecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEE
Confidence 33445566666664 2223333333345556666665554433333344332211122222367888999999988877
Q ss_pred eccCCCCCCCCCCCCCCCCChHHHHHHHHHhCC------CHHHHhHhCc-------ccCCCCCHHHHHHHh
Q psy15065 200 YSPLSNPTNPFRAKVPFVLEDQTVKDIASRYDK------TPAQIQLGNI-------TVPKSVTKSRLEENR 257 (773)
Q Consensus 200 ~spL~~g~~~~~~~~~~~~~~~~l~~iA~~~g~------s~aqvAL~~v-------vi~g~~~~~ql~enl 257 (773)
=|+=.+ ....|.++|++.|. ++.++-..|. +-.|+|+|+-|-+++
T Consensus 220 G~~nSS-------------Ns~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 220 GSKNSS-------------NSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEV 277 (294)
T ss_pred CCCCCc-------------cHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHH
Confidence 554433 35689999999997 5556655555 678999998776654
No 70
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=36.94 E-value=6.5e+02 Score=28.23 Aligned_cols=166 Identities=16% Similarity=0.126 Sum_probs=100.1
Q ss_pred HHHHHHHHHHH-----------HHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHc-CC
Q psy15065 72 DLIRKCLQESL-----------DLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDE-GL 139 (773)
Q Consensus 72 ~~i~~~le~SL-----------~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~-Gk 139 (773)
+.++..+++-. +.|| +|+..||.-.... -..+.+.++..++.++..++ +.
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP---------------~~~d~~~~e~a~~vk~V~~av~v 189 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDP---------------KLDDKSPSEAAKVLEDVLQAVDV 189 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCc---------------cccccCHHHHHHHHHHHHHhCCC
Confidence 55666665544 4555 5788888632110 01335667777777777553 33
Q ss_pred cceEecc---CCCHHHHHHHHHhcCC-CeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCC
Q psy15065 140 ARSIGVS---NFNTKQLETLLGVARI-KPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVP 215 (773)
Q Consensus 140 Ir~iGvS---n~~~~~l~~~~~~a~~-~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~ 215 (773)
=--|+=| ..+++.++++++.+.- +|..+-.... .+ -..+.+.|+++|..+++++|..-+.
T Consensus 190 PLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e----~N----y~~ia~lAk~yg~~Vvv~s~~Din~-------- 253 (389)
T TIGR00381 190 PIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLD----LD----YEKIANAAKKYGHVVLSWTIMDINM-------- 253 (389)
T ss_pred CEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCch----hh----HHHHHHHHHHhCCeEEEEcCCcHHH--------
Confidence 2334433 5789999999998764 6776643221 01 3578999999999999999875331
Q ss_pred CCCChHHHHHHHHHhCCCHHHHhHhCcccCCCCCHHHHHHHhcccCCCCCHHHHHHHHccccCCCcccCCC
Q psy15065 216 FVLEDQTVKDIASRYDKTPAQIQLGNITVPKSVTKSRLEENRDIFDFELSQEDMDTLDGLDANGRTCCVPG 286 (773)
Q Consensus 216 ~~~~~~~l~~iA~~~g~s~aqvAL~~vvi~g~~~~~ql~enl~a~~~~Lt~e~~~~L~~~~~~~~~~~~p~ 286 (773)
...+...+.++|+.+.+|.+-....+-....+..-+++. .-++.++. ..+...||-
T Consensus 254 ----ak~Ln~kL~~~Gv~~eDIVlDP~t~alG~Gieya~s~~e----------rIRraALk-gD~~L~~Pi 309 (389)
T TIGR00381 254 ----QKTLNRYLLKRGLMPRDIVMDPTTCALGYGIEFSITNME----------RIRLSGLK-GDTDLNMPM 309 (389)
T ss_pred ----HHHHHHHHHHcCCCHHHEEEcCCCccccCCHHHHHHHHH----------HHHHHHhc-CCcCCCCCe
Confidence 234555566889999998776554444455554444433 12233342 455667773
No 71
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=36.69 E-value=2e+02 Score=32.59 Aligned_cols=89 Identities=20% Similarity=0.094 Sum_probs=63.1
Q ss_pred CCCCCCcEEEEeccCCCCCCCHHHHHH--------HHHHH--HHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCC
Q psy15065 50 GVITREDIFITTKLWITFYSSPDLIRK--------CLQES--LDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFD 119 (773)
Q Consensus 50 ~~~~R~~v~I~TK~~~~~~~~~~~i~~--------~le~S--L~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d 119 (773)
++--+.+++|++-++.-.+..|-.+.- .|++| -+||.+.|+|.
T Consensus 162 ~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~--------------------------- 214 (561)
T COG2987 162 GGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDE--------------------------- 214 (561)
T ss_pred CCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhh---------------------------
Confidence 334577899999987543323322221 12333 27899999985
Q ss_pred CCCCHHHHHHHHHHHHHcCCcceEeccCCCHHHHHHHHHhcCCCeEE
Q psy15065 120 DSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVARIKPVT 166 (773)
Q Consensus 120 ~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~~~~~a~~~~~~ 166 (773)
-...++|+++-.++..++|+-.+||+-..-++.++++++. ++.|.+
T Consensus 215 ~a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r-~~~pD~ 260 (561)
T COG2987 215 IAETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRR-GIRPDL 260 (561)
T ss_pred hcCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHc-CCCCce
Confidence 2346899999999999999999999999888888888875 344443
No 72
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=35.48 E-value=6e+02 Score=27.47 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHHHHHcCC----eeEEecccchHHHHHHHHH
Q psy15065 595 ANYVDTWLEMEKLVADGL----VKSIGVSNFNSKQIQDILD 631 (773)
Q Consensus 595 ~~~~e~~~aLe~l~~~Gk----Ir~iGvSn~~~~~l~~~~~ 631 (773)
..+..++++++.+++.|. |..+.+-..+.+++.++++
T Consensus 141 ~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~ 181 (331)
T PRK00164 141 DRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLE 181 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHH
Confidence 356789999999999885 3344444455556655554
No 73
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=35.42 E-value=5.6e+02 Score=28.93 Aligned_cols=133 Identities=16% Similarity=0.209 Sum_probs=77.9
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEecc
Q psy15065 67 FYSSPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVS 146 (773)
Q Consensus 67 ~~~~~~~i~~~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvS 146 (773)
.+.+++.+.+.+|.-.+ |-+|.+-+|.. =+.+.++.++++| |..|+-
T Consensus 138 ~~mt~d~~~~~ie~qa~----~GVDfmTiHcG---------------------------i~~~~~~~~~~~~--R~~giV 184 (431)
T PRK13352 138 VDMTEDDLFDVIEKQAK----DGVDFMTIHCG---------------------------VTRETLERLKKSG--RIMGIV 184 (431)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccc---------------------------hhHHHHHHHHhcC--CccCee
Confidence 34567777777777665 56788999963 1457888999888 556666
Q ss_pred CCCHHHHHHHHHhcCCCeEEEcccchhhhhcCcccc-hHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChHHHH-
Q psy15065 147 NFNTKQLETLLGVARIKPVTNQARYLFLIEVHPYLT-QKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVK- 224 (773)
Q Consensus 147 n~~~~~l~~~~~~a~~~~~~~Q~~ysl~~~~~p~~~-~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~~l~- 224 (773)
+-.-.-+...+...+ +.+|+.. -+++++.|+++++.+ .||.|..+. ....-.+...+.
T Consensus 185 SRGGs~~~~WM~~n~--------------~ENPlye~fD~lLeI~~~yDVtl----SLGDglRPG--~i~Da~D~aQi~E 244 (431)
T PRK13352 185 SRGGSFLAAWMLHNN--------------KENPLYEHFDYLLEILKEYDVTL----SLGDGLRPG--CIADATDRAQIQE 244 (431)
T ss_pred cCCHHHHHHHHHHcC--------------CcCchHHHHHHHHHHHHHhCeee----eccCCcCCC--ccccCCcHHHHHH
Confidence 655555444433221 1122221 367999999999987 566553211 111112222222
Q ss_pred --------HHHHHhCCCHHHHhHhCcccCCCCCHHHHHHHhc
Q psy15065 225 --------DIASRYDKTPAQIQLGNITVPKSVTKSRLEENRD 258 (773)
Q Consensus 225 --------~iA~~~g~s~aqvAL~~vvi~g~~~~~ql~enl~ 258 (773)
+-|.+.|+ |+ .+=-||-+-..|++.|++
T Consensus 245 l~~lgeL~~RA~e~gV---Qv---MVEGPGHvPl~~I~~nv~ 280 (431)
T PRK13352 245 LITLGELVKRAREAGV---QV---MVEGPGHVPLDQIEANVK 280 (431)
T ss_pred HHHHHHHHHHHHHcCC---eE---EEECCCCCCHHHHHHHHH
Confidence 22333332 11 123478888999999987
No 74
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=35.41 E-value=4.4e+02 Score=28.70 Aligned_cols=71 Identities=18% Similarity=0.145 Sum_probs=39.0
Q ss_pred CcchHHHHHHHHHHcCCCeEecCCCCCCHHHHH----HHHHhhhhcCCCCCCCeEEEecCCCCCCChhhHHHHHHHHHHh
Q psy15065 440 KKGEVKQAVGYAIDIGYRHIDCAHVYENEDEVG----DAIAQKLKDNVVKREDLYITSKLWNTFHRPDLVKPALQKTLQN 515 (773)
Q Consensus 440 ~~~~~~~~l~~Ale~Gin~fDTA~~YgsE~~lG----~~l~~~~~~~~~~R~~v~I~TK~~~~~~~~~~i~~~le~SL~~ 515 (773)
+.++..++++.+.+.|+..|-- .|.|..+- +.++.. ++.. ...++.|+|-.. .+. ..-+.|+.
T Consensus 46 s~eei~~li~~~~~~Gv~~I~~---tGGEPllr~dl~~li~~i-~~~~-~l~~i~itTNG~-------ll~-~~~~~L~~ 112 (329)
T PRK13361 46 SLEELAWLAQAFTELGVRKIRL---TGGEPLVRRGCDQLVARL-GKLP-GLEELSLTTNGS-------RLA-RFAAELAD 112 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE---ECcCCCccccHHHHHHHH-HhCC-CCceEEEEeChh-------HHH-HHHHHHHH
Confidence 4577888999999999987743 35554332 333221 1111 122566776631 122 24455677
Q ss_pred cCCCceeE
Q psy15065 516 LKLDYLDL 523 (773)
Q Consensus 516 L~~dyiDl 523 (773)
.|+++|-+
T Consensus 113 aGl~~v~I 120 (329)
T PRK13361 113 AGLKRLNI 120 (329)
T ss_pred cCCCeEEE
Confidence 78776654
No 75
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=35.28 E-value=1.6e+02 Score=31.58 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=73.7
Q ss_pred HHHHHHcCCeeEEecccchHHHHHHHHHh----C-CCCceeeeeccCCcCChHHHHHHHHhcCceEEEecCCCCCCCCCC
Q psy15065 604 MEKLVADGLVKSIGVSNFNSKQIQDILDK----G-TIKPVVNQVECHPYLTQHKLKQWCEERQILITAYSPLGSPDRPWA 678 (773)
Q Consensus 604 Le~l~~~GkIr~iGvSn~~~~~l~~~~~~----~-~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~via~spL~~g~~~~~ 678 (773)
++.|.-..++-.+-=++.+.+.+.++.+. . .+ -+.+-+.+.-..++....+++++-++-++.-+.=
T Consensus 150 ~~~l~~~~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~-~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~-------- 220 (281)
T PRK12360 150 VENIPFLDKACVVAQTTIIPELWEDILNVIKLKSKEL-VFFNTICSATKKRQESAKELSKEVDVMIVIGGKH-------- 220 (281)
T ss_pred HhhCccccCEEEEECCCCcHHHHHHHHHHHHHhCccc-ccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCC--------
Confidence 34433335555555566777776666542 1 11 1234555555566778999999999877753322
Q ss_pred CCCCCCCCCcHHHHHHHHHhCC------CHHHHHHHHHHhCCcE-EeeCCCCHHHHHHhh
Q psy15065 679 KPGDPSLLDDPKIKEIAAKYNK------TSAQILIKYQVQQGNI-CIPKSVTPSRIEENA 731 (773)
Q Consensus 679 ~~~~~~~~~~~~l~~ia~~~g~------s~aqlaL~w~l~~~~v-~i~G~~~~~~l~enl 731 (773)
.....+|.++|++++. ++.++-..|+.....| +..|+|+|+.+-+.+
T Consensus 221 ------SsNT~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV 274 (281)
T PRK12360 221 ------SSNTQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEV 274 (281)
T ss_pred ------CccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHH
Confidence 1233589999999885 6789999999876655 466999999875543
No 76
>PRK06361 hypothetical protein; Provisional
Probab=34.41 E-value=4.9e+02 Score=26.10 Aligned_cols=182 Identities=15% Similarity=0.081 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHcCCCEEEcCCCCC--C-HHH---HHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHH
Q psy15065 10 REVYEAVCHAIDLGYRHFDCAYYYQ--N-EGQ---IGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQESLD 83 (773)
Q Consensus 10 ~~a~~~l~~Al~~Gin~iDTA~~Yg--~-E~~---iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~SL~ 83 (773)
....++++.|.+.|+..|=-+++.. + ... +-+.+++. ++ ...=+|+...=+... .++.+ ..+...++
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~-~~--~~~i~v~~GiE~~~~---~~~~~-~~~~~~~~ 82 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEEL-EL--YWDIEVIPGVELTHV---PPKLI-PKLAKKAR 82 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHH-hh--cCCCEEEEEEEEccc---Cchhh-chHHHHHH
Confidence 3578999999999999986666653 1 111 11111111 10 011123333333221 22233 33345666
Q ss_pred HcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCHHHHHHHHHhcCCC
Q psy15065 84 LLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVARIK 163 (773)
Q Consensus 84 rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~~~~~a~~~ 163 (773)
+++. |+..+|.... + .+.. ... -.++.+.|.+.-+|=-..-...+.+++...++.
T Consensus 83 ~~~~---~~~svH~~~~------------------~--~~~~-~~~-~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~ 137 (212)
T PRK06361 83 DLGA---EIVVVHGETI------------------V--EPVE-EGT-NLAAIECEDVDILAHPGLITEEEAELAAENGVF 137 (212)
T ss_pred HCCC---EEEEECCCCc------------------c--hhhh-hhh-HHHHHhCCCCcEecCcchhhHHHHHHHHHcCeE
Confidence 6654 5557894310 0 0000 000 145778888766653332222333444434433
Q ss_pred eEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHh
Q psy15065 164 PVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDIASRYDKTPAQIQ 238 (773)
Q Consensus 164 ~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~~l~~iA~~~g~s~aqvA 238 (773)
+-.|- ... .+ .....++.+|++.|+.++.-|.-..+. .+...+.+..++++.|.+..+|-
T Consensus 138 lEin~-~~~-----~~-~~~~~~l~~a~~~gi~vv~~SDaH~~~--------d~~~~~~~~~i~~~~gl~~~~v~ 197 (212)
T PRK06361 138 LEITA-RKG-----HS-LTNGHVARIAREAGAPLVINTDTHAPS--------DLITYEFARKVALGAGLTEKELE 197 (212)
T ss_pred EEEEC-CCC-----cc-cchHHHHHHHHHhCCcEEEECCCCCHH--------HHHHHHHHHHHHcCCCCCHHHHH
Confidence 33321 111 11 124578999999999987766543221 12234677888888888888873
No 77
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=33.55 E-value=2e+02 Score=30.79 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=81.2
Q ss_pred cHHHHHHHHHHHH--HcCCeeEEecccchHHHHHHHHHh----CC--CCceeeeeccCCcCChHHHHHHHHhcCceEEEe
Q psy15065 596 NYVDTWLEMEKLV--ADGLVKSIGVSNFNSKQIQDILDK----GT--IKPVVNQVECHPYLTQHKLKQWCEERQILITAY 667 (773)
Q Consensus 596 ~~~e~~~aLe~l~--~~GkIr~iGvSn~~~~~l~~~~~~----~~--~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~via~ 667 (773)
.+.|..+.++.|. ...++-++-=++-+.++..++.+. .. ..+..+-+.|--.+++..+.+++.+-++-++.-
T Consensus 141 ~lve~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG 220 (294)
T COG0761 141 LLVESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVG 220 (294)
T ss_pred EEEecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEEC
Confidence 3445666666664 333555554445555555544432 11 224445556666667788999999989888765
Q ss_pred cCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhCC------CHHHHHHHHHHhCCcE-EeeCCCCHHHHHHhhc
Q psy15065 668 SPLGSPDRPWAKPGDPSLLDDPKIKEIAAKYNK------TSAQILIKYQVQQGNI-CIPKSVTPSRIEENAQ 732 (773)
Q Consensus 668 spL~~g~~~~~~~~~~~~~~~~~l~~ia~~~g~------s~aqlaL~w~l~~~~v-~i~G~~~~~~l~enl~ 732 (773)
||=.+ ...+|.++|+++|. ++.++-..|+.....| +-.|+|+|+-|-+++-
T Consensus 221 ~~nSS--------------Ns~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi 278 (294)
T COG0761 221 SKNSS--------------NSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVI 278 (294)
T ss_pred CCCCc--------------cHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHH
Confidence 54433 23589999999997 5788899999886665 4569999998877653
No 78
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=33.10 E-value=5.9e+02 Score=28.25 Aligned_cols=64 Identities=14% Similarity=0.247 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCC-eeEEecccchHHHHHHHHHhCCCCceeeeeccCCcCC--------h------HHHHHHHHhcCceEE
Q psy15065 601 WLEMEKLVADGL-VKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLT--------Q------HKLKQWCEERQILIT 665 (773)
Q Consensus 601 ~~aLe~l~~~Gk-Ir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~--------~------~~l~~~~~~~gI~vi 665 (773)
|+.++.+.+.++ .+..+++....+.++.+.+.+ ++.+..-+..+..+. + .+.+++++++|+.+.
T Consensus 52 ~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 52 RAVIRAIVALGLPARLMAWCRARDADIEAAARCG-VDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred HHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCC-cCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 556677766643 677777777788888877754 333333333332211 1 257889999998754
No 79
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=32.72 E-value=3.7e+02 Score=30.47 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCCCCeEEEecCCCCCCChhhHHHHHHHHHHhcC-CCceeEEEeeccc
Q psy15065 463 HVYENEDEVGDAIAQKLKDNVVKREDLYITSKLWNTFHRPDLVKPALQKTLQNLK-LDYLDLYLIHWPQ 530 (773)
Q Consensus 463 ~~YgsE~~lG~~l~~~~~~~~~~R~~v~I~TK~~~~~~~~~~i~~~le~SL~~L~-~dyiDl~~lH~p~ 530 (773)
-+||+|+.+-++|.+..+.. +.+-++|.|=|...- -.+.+..-+++.-++.. ---+.++.+|.|.
T Consensus 61 ~V~Gg~~~L~~~i~~~~~~~--~p~~I~v~~tC~~~l-iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpg 126 (428)
T cd01965 61 AVFGGEDNLIEALKNLLSRY--KPDVIGVLTTCLTET-IGDDVAGFIKEFRAEGPEPADFPVVYASTPS 126 (428)
T ss_pred eeECcHHHHHHHHHHHHHhc--CCCEEEEECCcchhh-cCCCHHHHHHHHHhhccCCCCCeEEEeeCCC
Confidence 35677888888888765442 344577777774332 22334333333322210 0135567777664
No 80
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=32.33 E-value=2.9e+02 Score=29.57 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCC
Q psy15065 70 SPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFN 149 (773)
Q Consensus 70 ~~~~i~~~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~ 149 (773)
+.+. +..+-+.|.++|+++|.+-.++.|..+ | ...+.++.+..+.+...++..++. -+
T Consensus 24 s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~-------p-------------~~~d~~e~~~~l~~~~~~~~~~l~-~~ 81 (287)
T PRK05692 24 PTAD-KIALIDRLSAAGLSYIEVASFVSPKWV-------P-------------QMADAAEVMAGIQRRPGVTYAALT-PN 81 (287)
T ss_pred CHHH-HHHHHHHHHHcCCCEEEeCCCcCcccc-------c-------------ccccHHHHHHhhhccCCCeEEEEe-cC
Confidence 4444 445556699999999998755544211 0 112235555555544456666665 47
Q ss_pred HHHHHHHHHhcCCCeEEEcccchhh-----hhcCc---ccchHHHHHHHHhCCcEEEE
Q psy15065 150 TKQLETLLGVARIKPVTNQARYLFL-----IEVHP---YLTQKKMAAFCRDNDLVITA 199 (773)
Q Consensus 150 ~~~l~~~~~~a~~~~~~~Q~~ysl~-----~~~~p---~~~~~~li~~~~~~gI~v~a 199 (773)
...++.+++. +++.+.+-+.-|-. ..... ...-.+.+++++++|+.+.+
T Consensus 82 ~~~ie~A~~~-g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 82 LKGLEAALAA-GADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred HHHHHHHHHc-CCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 8888888764 33322222222110 00110 00123678999999998864
No 81
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=31.50 E-value=6.8e+02 Score=26.88 Aligned_cols=68 Identities=6% Similarity=-0.023 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCee-EEecccchHHHHHHHHHhCCCCceeeeeccCCcC---ChHHHHHHHHhcCceEEEecCC
Q psy15065 601 WLEMEKLVADGLVK-SIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYL---TQHKLKQWCEERQILITAYSPL 670 (773)
Q Consensus 601 ~~aLe~l~~~GkIr-~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~---~~~~l~~~~~~~gI~via~spL 670 (773)
|+.+.+|.+...|. +.|=+-++.+++.++++.+.++ ++|+.....- .-.++..+|+++||.++..+-+
T Consensus 217 ~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d--~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~ 288 (316)
T cd03319 217 DDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYD--GINIKLMKTGGLTEALRIADLARAAGLKVMVGCMV 288 (316)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCC--EEEEeccccCCHHHHHHHHHHHHHcCCCEEEECch
Confidence 55677888877665 5566778999999999987655 4455544332 1357899999999999887544
No 82
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=31.31 E-value=39 Score=25.59 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCHHHHhH--hCcccCCCCCHHHHHHHhccc
Q psy15065 223 VKDIASRYDKTPAQIQL--GNITVPKSVTKSRLEENRDIF 260 (773)
Q Consensus 223 l~~iA~~~g~s~aqvAL--~~vvi~g~~~~~ql~enl~a~ 260 (773)
+++||+..|+|++.|.. .--.-+...+.+++.+-++.+
T Consensus 2 i~dIA~~agvS~~TVSr~ln~~~~vs~~tr~rI~~~a~~l 41 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSRVLNGPPRVSEETRERILEAAEEL 41 (46)
T ss_dssp HHHHHHHHTSSHHHHHHHHTTCSSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999854 322223333345555555433
No 83
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=30.36 E-value=1e+02 Score=34.73 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=42.9
Q ss_pred CcHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhC-CCCceeeeeccC
Q psy15065 595 ANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKG-TIKPVVNQVECH 645 (773)
Q Consensus 595 ~~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~-~~~~~~~Q~~~~ 645 (773)
.+++|+++-.++..++|+-.+||+-..-++-+.++++.+ .++.+.-|..+|
T Consensus 217 ~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 217 ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 467899999999999999999999999999999999865 345666776655
No 84
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=30.13 E-value=7.2e+02 Score=28.00 Aligned_cols=132 Identities=16% Similarity=0.189 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccC
Q psy15065 68 YSSPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSN 147 (773)
Q Consensus 68 ~~~~~~i~~~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn 147 (773)
+.+++.+.+.+|+-.+ |-+|.+-+|.- =+.+.++.|+++| |..|+-+
T Consensus 136 ~mt~d~~~~~ie~qa~----dGVDfmTiH~G---------------------------i~~~~~~~~~~~~--R~~giVS 182 (423)
T TIGR00190 136 DMDEDDMFRAIEKQAK----DGVDFMTIHAG---------------------------VLLEYVERLKRSG--RITGIVS 182 (423)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEccc---------------------------hhHHHHHHHHhCC--CccCeec
Confidence 3567777777776665 56788899963 1467888999988 5667666
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccchhhhhcCcccc-hHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChHH----
Q psy15065 148 FNTKQLETLLGVARIKPVTNQARYLFLIEVHPYLT-QKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQT---- 222 (773)
Q Consensus 148 ~~~~~l~~~~~~a~~~~~~~Q~~ysl~~~~~p~~~-~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~~---- 222 (773)
-.-.-+...+...+ +.+|+.. -+++++.|+++++.+ .||.|..+. ....-.+...
T Consensus 183 RGGs~~~~WM~~~~--------------~ENPlye~fD~lLeI~~~yDVtl----SLGDglRPG--~i~DA~D~aQi~El 242 (423)
T TIGR00190 183 RGGAILAAWMLHHH--------------KENPLYKNFDYILEIAKEYDVTL----SLGDGLRPG--CIADATDRAQISEL 242 (423)
T ss_pred CcHHHHHHHHHHcC--------------CcCchHHHHHHHHHHHHHhCeee----eccCCcCCC--ccccCCcHHHHHHH
Confidence 55555544433221 1123222 357999999999987 566553211 1111122222
Q ss_pred -----HHHHHHHhCCCHHHHhHhCcccCCCCCHHHHHHHhc
Q psy15065 223 -----VKDIASRYDKTPAQIQLGNITVPKSVTKSRLEENRD 258 (773)
Q Consensus 223 -----l~~iA~~~g~s~aqvAL~~vvi~g~~~~~ql~enl~ 258 (773)
|.+-|.+.|+ |+ .+=-||-+-..|++.|++
T Consensus 243 ~~lgeL~~rA~e~gV---Qv---MVEGPGHvPl~~I~~nv~ 277 (423)
T TIGR00190 243 ITLGELVERAREADV---QC---MVEGPGHVPLDQIEANVR 277 (423)
T ss_pred HHHHHHHHHHHHcCC---eE---EEECCCCCcHHHHHHHHH
Confidence 2233333332 11 122478888899999987
No 85
>PRK08392 hypothetical protein; Provisional
Probab=29.77 E-value=6e+02 Score=25.69 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCeeEEeccc----c----hHHHHHHHH---HhCCCCceeeeeccCCcCChHHHHHHHHhcCceEEE
Q psy15065 598 VDTWLEMEKLVADGLVKSIGVSN----F----NSKQIQDIL---DKGTIKPVVNQVECHPYLTQHKLKQWCEERQILITA 666 (773)
Q Consensus 598 ~e~~~aLe~l~~~GkIr~iGvSn----~----~~~~l~~~~---~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~via 666 (773)
.+-++.+.++.+.|++--+|==. + ..+.+.+++ ...++.+-+| .....+...+++.|++.|+.++-
T Consensus 103 ~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiN---t~~~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 103 HEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEIS---SRYRVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred HHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEe---CCCCCCCHHHHHHHHHcCCEEEE
Confidence 35566677777777655444311 1 112333333 2333333333 22223456899999999987653
Q ss_pred ecCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHH
Q psy15065 667 YSPLGSPDRPWAKPGDPSLLDDPKIKEIAAKYNKTSAQI 705 (773)
Q Consensus 667 ~spL~~g~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aql 705 (773)
-| .... + ..+-.-+...+++++.|.++.++
T Consensus 180 gS----DAH~---~--~~vg~~~~a~~~~~~~g~~~~~~ 209 (215)
T PRK08392 180 AS----DAHR---P--EDVGNVSWSLKVFKKAGGKKEDL 209 (215)
T ss_pred eC----CCCC---h--HHCCcHHHHHHHHHHcCCCHHHe
Confidence 22 1110 0 01111246677888888887664
No 86
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=29.46 E-value=2.6e+02 Score=30.48 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=38.3
Q ss_pred Eecccc---hHHHHHHHHHhCC-CCceeeeeccCCcCChHHHHHHHHhcCceEEEecCC
Q psy15065 616 IGVSNF---NSKQIQDILDKGT-IKPVVNQVECHPYLTQHKLKQWCEERQILITAYSPL 670 (773)
Q Consensus 616 iGvSn~---~~~~l~~~~~~~~-~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~via~spL 670 (773)
|..|.. +++.++++++.+. -++.++-++.. +-..+.+.|+++|..|++.+|.
T Consensus 129 Id~s~n~~kD~evleaale~~~g~~pLInSat~e---n~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 129 IGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEED---NYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred EecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHH---HHHHHHHHHHHhCCeEEEEcHH
Confidence 666633 7889999998654 45776665532 2357999999999999999865
No 87
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=28.49 E-value=2.8e+02 Score=31.52 Aligned_cols=68 Identities=26% Similarity=0.343 Sum_probs=40.9
Q ss_pred cCccceeccccCc------------chHHHHHHHHHHcCCCeEecCCCCCCHHHHHHHHHhhhhcCCCCCCCeEEEecCC
Q psy15065 429 FPIFGLGTWKSKK------------GEVKQAVGYAIDIGYRHIDCAHVYENEDEVGDAIAQKLKDNVVKREDLYITSKLW 496 (773)
Q Consensus 429 vs~lglGt~~~~~------------~~~~~~l~~Ale~Gin~fDTA~~YgsE~~lG~~l~~~~~~~~~~R~~v~I~TK~~ 496 (773)
|.+|++|...+++ +++.+++..+.+.|+.-|--==+||
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyg------------------------------ 197 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYG------------------------------ 197 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecC------------------------------
Confidence 4488899877642 3455666666666665443222332
Q ss_pred CCCCChhhHHHHHHHHHHhcCCCceeEEEee
Q psy15065 497 NTFHRPDLVKPALQKTLQNLKLDYLDLYLIH 527 (773)
Q Consensus 497 ~~~~~~~~i~~~le~SL~~L~~dyiDl~~lH 527 (773)
....+.+.+++.++..++ |+.|+|.+|.+-
T Consensus 198 lP~QT~~~~~~~l~~a~~-l~pdhis~y~L~ 227 (416)
T COG0635 198 LPGQTLESLKEDLEQALE-LGPDHLSLYSLA 227 (416)
T ss_pred CCCCCHHHHHHHHHHHHh-CCCCEEEEeeee
Confidence 123344556666666554 789999999765
No 88
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=28.29 E-value=4.6e+02 Score=25.23 Aligned_cols=78 Identities=23% Similarity=0.182 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCc-ceEeccCC
Q psy15065 70 SPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLA-RSIGVSNF 148 (773)
Q Consensus 70 ~~~~i~~~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkI-r~iGvSn~ 148 (773)
.--.++..|.+-|+..|-+.+|+=- +. .+...++.+.-..+.+.+.+|+. |.|-++..
T Consensus 10 aG~~lK~~l~~~L~~~g~eV~D~G~-~~--------------------~~~~~dYpd~a~~va~~V~~g~~~~GIliCGt 68 (148)
T PRK05571 10 AGFELKEEIIEHLEELGHEVIDLGP-DS--------------------YDASVDYPDYAKKVAEAVVAGEADRGILICGT 68 (148)
T ss_pred chHHHHHHHHHHHHHCCCEEEEcCC-CC--------------------CCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3456899999999999988888621 11 02145778888999999999987 88999999
Q ss_pred CHHHHHHHHHhcCCCeEEEc
Q psy15065 149 NTKQLETLLGVARIKPVTNQ 168 (773)
Q Consensus 149 ~~~~l~~~~~~a~~~~~~~Q 168 (773)
..-.-..+.+..++..+.+.
T Consensus 69 GiG~siaANK~~GIRAA~~~ 88 (148)
T PRK05571 69 GIGMSIAANKVKGIRAALCH 88 (148)
T ss_pred cHHHHHHHhcCCCeEEEEEC
Confidence 88777778887777777665
No 89
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=28.22 E-value=93 Score=33.31 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=66.0
Q ss_pred CCeeEEecccchHHHHHHHHHh----CCCC--ceeeeeccCCcCChHHHHHHHHhcCceEEEecCCCCCCCCCCCCCCCC
Q psy15065 611 GLVKSIGVSNFNSKQIQDILDK----GTIK--PVVNQVECHPYLTQHKLKQWCEERQILITAYSPLGSPDRPWAKPGDPS 684 (773)
Q Consensus 611 GkIr~iGvSn~~~~~l~~~~~~----~~~~--~~~~Q~~~~~~~~~~~l~~~~~~~gI~via~spL~~g~~~~~~~~~~~ 684 (773)
+++-.+-=++++.+.+.++.+. ..-. ++.+.+.+.-..++..+.+++++-++-++.-++-.
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~S------------- 221 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNS------------- 221 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT--------------
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCC-------------
Confidence 4788888888888877766552 1111 13344444444556789999999887776533221
Q ss_pred CCCcHHHHHHHHHhCC------CHHHHHHHHHHhCCcE-EeeCCCCHHHHHHhh
Q psy15065 685 LLDDPKIKEIAAKYNK------TSAQILIKYQVQQGNI-CIPKSVTPSRIEENA 731 (773)
Q Consensus 685 ~~~~~~l~~ia~~~g~------s~aqlaL~w~l~~~~v-~i~G~~~~~~l~enl 731 (773)
....+|.++|++++. ++.++-..|+-....| +..|+|+|+.+-+.+
T Consensus 222 -sNT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eV 274 (281)
T PF02401_consen 222 -SNTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEV 274 (281)
T ss_dssp -HHHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHH
T ss_pred -ccHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHH
Confidence 233589999999985 6899999999887766 466999999876654
No 90
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=28.14 E-value=3.6e+02 Score=30.62 Aligned_cols=74 Identities=26% Similarity=0.374 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccEEEE-ecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHH-HHHHHHcCCcceEecc
Q psy15065 69 SSPDLIRKCLQESLDLLQMDYVNLYLM-HWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKT-MECLVDEGLARSIGVS 146 (773)
Q Consensus 69 ~~~~~i~~~le~SL~rLgtDyiDl~~l-H~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~a-L~~L~~~GkIr~iGvS 146 (773)
.+.+.+.+.++..++ |+.|+|.+|.+ |-|.... .....++. ...+.....+.++. .+.|.+.|- +.+|+|
T Consensus 201 QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~-----~~~~~~~~-~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeis 272 (416)
T COG0635 201 QTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKF-----AQRKIKGK-ALPDEDEKADMYELVEELLEKAGY-RQYEIS 272 (416)
T ss_pred CCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchh-----hhhcccCC-CCcChHHHHHHHHHHHHHHHHCCC-cEEeec
Confidence 477788888877654 88999999988 4442211 11111121 11111122345544 455666777 999999
Q ss_pred CCCH
Q psy15065 147 NFNT 150 (773)
Q Consensus 147 n~~~ 150 (773)
||..
T Consensus 273 nfa~ 276 (416)
T COG0635 273 NFAK 276 (416)
T ss_pred hhcC
Confidence 9986
No 91
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=27.93 E-value=2.8e+02 Score=28.70 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcC-CeeEEecccchHHHHHHHHHhCCCCceeeeeccCC--------------cCChHHHHHHHHhcCce
Q psy15065 599 DTWLEMEKLVADG-LVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHP--------------YLTQHKLKQWCEERQIL 663 (773)
Q Consensus 599 e~~~aLe~l~~~G-kIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~--------------~~~~~~l~~~~~~~gI~ 663 (773)
+.++.++++.+.+ +++...++.-....++.+.+.+ ++.+.+-+..+. +..-.+.++++++.|+.
T Consensus 52 ~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~ 130 (265)
T cd03174 52 DDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLE 130 (265)
T ss_pred CHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 4566777777777 5666666655566666666654 332222222221 01113566778888876
Q ss_pred EEEe
Q psy15065 664 ITAY 667 (773)
Q Consensus 664 via~ 667 (773)
+...
T Consensus 131 v~~~ 134 (265)
T cd03174 131 VEGS 134 (265)
T ss_pred EEEE
Confidence 6544
No 92
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=27.93 E-value=4.4e+02 Score=29.92 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=63.4
Q ss_pred CCCCCHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHcCC----CcccEEEEecCCCCCCCCC
Q psy15065 31 YYYQNEGQIGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQESLDLLQM----DYVNLYLMHWPHAFRSGGD 106 (773)
Q Consensus 31 ~~Yg~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~SL~rLgt----DyiDl~~lH~P~~~~~~~~ 106 (773)
-+||.++.+-++|++..+.. +.+=++|.|=+.. +-+-..++...+++.- ..+.++.+|.|... +
T Consensus 64 vVfGg~~kL~~aI~~~~~~~--~P~~I~V~ttc~~------~iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~--g-- 131 (429)
T cd03466 64 TVYGGEKNLKKGLKNVIEQY--NPEVIGIATTCLS------ETIGEDVPRIIREFREEVDDSEPKIIPASTPGYG--G-- 131 (429)
T ss_pred eEECcHHHHHHHHHHHHHhc--CCCEEEEeCCchH------HHhhcCHHHHHHHHhhcccCCCCcEEEEECCCCc--c--
Confidence 46788889999998876532 2445677766532 2222233333333322 23568888877321 0
Q ss_pred CcccCCCCCCCCCCCCCHHHHHHHHHH-HH----HcCCcceEeccC--CCHHHHHHHHHhcCCCeEE
Q psy15065 107 LVPFKADGKFDFDDSVDYVDVWKTMEC-LV----DEGLARSIGVSN--FNTKQLETLLGVARIKPVT 166 (773)
Q Consensus 107 ~~~~~~~~~~~~d~~~~~~e~~~aL~~-L~----~~GkIr~iGvSn--~~~~~l~~~~~~a~~~~~~ 166 (773)
+.....+.++++|-+ +. +.++|.-||-.+ -+.+.+.++++..++++..
T Consensus 132 ------------~~~~G~~~a~~al~~~~~~~~~~~~~VNlig~~~~~~D~~ei~~lL~~~Gl~~~~ 186 (429)
T cd03466 132 ------------THVEGYDTAVRSIVKNIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEYIL 186 (429)
T ss_pred ------------cHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCChhHHHHHHHHHHHcCCCeEE
Confidence 111234455555543 22 246688887433 3467888888888877643
No 93
>PRK05414 urocanate hydratase; Provisional
Probab=27.91 E-value=1.6e+02 Score=33.84 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhC-CCCceeeeeccC
Q psy15065 596 NYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKG-TIKPVVNQVECH 645 (773)
Q Consensus 596 ~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~-~~~~~~~Q~~~~ 645 (773)
++.|+++-.++.+++|+..+||+-..-++-++++++.+ .++++.-|..+|
T Consensus 218 ~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaH 268 (556)
T PRK05414 218 DLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAH 268 (556)
T ss_pred CHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCcccc
Confidence 46699999999999999999999999999999999865 345666776654
No 94
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=27.66 E-value=2.4e+02 Score=32.51 Aligned_cols=125 Identities=17% Similarity=0.062 Sum_probs=71.4
Q ss_pred HHHHHHHcCCCEEE--cCCCC---CCHHH-------HHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHH------
Q psy15065 15 AVCHAIDLGYRHFD--CAYYY---QNEGQ-------IGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRK------ 76 (773)
Q Consensus 15 ~l~~Al~~Gin~iD--TA~~Y---g~E~~-------iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~------ 76 (773)
-.+...+.|+..+- ||-.| |++++ +..+-++.+ ++--+.++||++-+|.-.+..|..+.-
T Consensus 107 ~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~--g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l 184 (546)
T PF01175_consen 107 HFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHF--GGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGL 184 (546)
T ss_dssp HHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHS--TTS-TT-EEEEE--STTCCHHHHHHHHTT-EEE
T ss_pred HHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhc--CCCCcceEEEEecccccccchHHHHHhcCceEE
Confidence 45566777888774 66555 55433 233334333 344578899999997643322222111
Q ss_pred ----HHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCHHH
Q psy15065 77 ----CLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQ 152 (773)
Q Consensus 77 ----~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~ 152 (773)
.-+..-+|+.+.|+|.+- .+++|+++-.++.+++|+..+||+-..-++.
T Consensus 185 ~vEvd~~ri~kR~~~g~ld~~~---------------------------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~ 237 (546)
T PF01175_consen 185 IVEVDPSRIEKRLEQGYLDEVT---------------------------DDLDEALARAKEARAKKEPLSIGLLGNAADL 237 (546)
T ss_dssp EEES-HHHHHHHHHTTSSSEEE---------------------------SSHHHHHHHHHHHHHTT--EEEEEES-HHHH
T ss_pred EEEECHHHHHHHHhCCCeeEEc---------------------------CCHHHHHHHHHHhhccCCeeEEEEeccHHHH
Confidence 113344788899999642 3689999999999999999999999988888
Q ss_pred HHHHHHhcC-CCeEEEc
Q psy15065 153 LETLLGVAR-IKPVTNQ 168 (773)
Q Consensus 153 l~~~~~~a~-~~~~~~Q 168 (773)
++++++..- ++++.-|
T Consensus 238 ~~~l~~~~i~pDl~tDQ 254 (546)
T PF01175_consen 238 WEELVERGIIPDLVTDQ 254 (546)
T ss_dssp HHHHHHTT---SEE---
T ss_pred HHHHHHcCCCCCcccCC
Confidence 888887632 3445555
No 95
>PRK13796 GTPase YqeH; Provisional
Probab=27.61 E-value=6.7e+02 Score=27.83 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHH
Q psy15065 596 NYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILD 631 (773)
Q Consensus 596 ~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~ 631 (773)
.+.+.++.|.++.+.+.+--+|.+|..-..+...+-
T Consensus 146 gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~ 181 (365)
T PRK13796 146 GIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRII 181 (365)
T ss_pred CHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHH
Confidence 456777888777777889999999998877666553
No 96
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=27.21 E-value=3.4e+02 Score=31.68 Aligned_cols=60 Identities=8% Similarity=0.068 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCC
Q psy15065 32 YYQNEGQIGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQESLDLLQMDYVNLYLMHWPH 99 (773)
Q Consensus 32 ~Yg~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~SL~rLgtDyiDl~~lH~P~ 99 (773)
++|+++.+-++|.+..++. +.+-++|+|=+ .++-+-..++...++++.+.++++.++.|.
T Consensus 66 v~G~~~~L~~aI~~~~~~~--~P~~I~V~sTC------~selIGdDi~~~~~~~~~~~~pvi~v~t~g 125 (511)
T TIGR01278 66 ARGSQTRLVDTVRRVDDRF--KPDLIVVTPSC------TSSLLQEDLGNLAAAAGLDKSKVIVADVNA 125 (511)
T ss_pred ecchHHHHHHHHHHHHHhc--CCCEEEEeCCC------hHHHhccCHHHHHHHhccCCCcEEEecCCC
Confidence 4688888888888875432 34456777665 234444444555555665568899999873
No 97
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=27.13 E-value=8.5e+02 Score=26.58 Aligned_cols=66 Identities=14% Similarity=0.246 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCee-EEecccchHHHHHHHHHhCCCCceeeeeccCCc---CChHHHHHHHHhcCceEEEec
Q psy15065 601 WLEMEKLVADGLVK-SIGVSNFNSKQIQDILDKGTIKPVVNQVECHPY---LTQHKLKQWCEERQILITAYS 668 (773)
Q Consensus 601 ~~aLe~l~~~GkIr-~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~---~~~~~l~~~~~~~gI~via~s 668 (773)
++.+.+|++.-.|. ..|=|-++++++.++++.+..+ ++|+..... ..-.++..+|+++|+.++..+
T Consensus 229 ~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d--~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 229 LEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVD--IIQPDVTKVGGITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCC--EEecCccccCCHHHHHHHHHHHHHcCCeEeccC
Confidence 45577777775554 5566778999999999877544 445543332 223579999999999987654
No 98
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.97 E-value=9.3e+02 Score=27.56 Aligned_cols=238 Identities=14% Similarity=0.130 Sum_probs=125.4
Q ss_pred cCCHHHHHHHHHHHHHcCC-CEEEc---CCCCC---------CHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCCC----
Q psy15065 6 QSLEREVYEAVCHAIDLGY-RHFDC---AYYYQ---------NEGQIGEAIQDKISQGVITREDIFITTKLWITFY---- 68 (773)
Q Consensus 6 ~~~~~~a~~~l~~Al~~Gi-n~iDT---A~~Yg---------~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~---- 68 (773)
+...-++..+.....+.|+ +..|. |+++= .|..+=..|+++.+.+ ++-.+|+|-+.....
T Consensus 13 ~~N~~DSe~m~~~L~~~G~~~~~~~~~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~---p~~~iiVtGC~aq~~~~i~ 89 (437)
T COG0621 13 QMNLYDSERMAGLLEAAGYEELVEDPEEADVVIINTCAVREKAEQKVRSAIGELKKLK---PDAKIIVTGCLAQAEEEIL 89 (437)
T ss_pred CccHHHHHHHHHHHHHcCCccccCCcccCCEEEEecCeeeehHHHHHHHHHHHHHHhC---CCCEEEEeCCccccCHHHH
Confidence 4566788888888888999 67776 88771 2555555566553322 666777777643211
Q ss_pred ------------CCHHHHHHHHHHHHHHcCC--CcccEE---E-EecCCCCCC----------CCC------CcccCCCC
Q psy15065 69 ------------SSPDLIRKCLQESLDLLQM--DYVNLY---L-MHWPHAFRS----------GGD------LVPFKADG 114 (773)
Q Consensus 69 ------------~~~~~i~~~le~SL~rLgt--DyiDl~---~-lH~P~~~~~----------~~~------~~~~~~~~ 114 (773)
.+.+.+-.+|++.+..-.- -.+|+. - -|-|..+.. |-+ ..|.....
T Consensus 90 ~~~p~vd~v~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~v~I~eGCn~~CtfCiiP~~RG~ 169 (437)
T COG0621 90 ERAPEVDIVLGPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKFDKLPPRREGGVRAFVKIQEGCNKFCTFCIIPYARGK 169 (437)
T ss_pred hhCCCceEEECCccHHHHHHHHHHHhhcccccccccccccccccccCCCCcCCCeEEEEEhhcCcCCCCCeeeeeccCCC
Confidence 2345556667766543221 122221 1 222322110 100 01222221
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC--c-------ceEeccC----CCHHHH-HHHHHhcCCCeEEEcccchhhhhcCcc
Q psy15065 115 KFDFDDSVDYVDVWKTMECLVDEGL--A-------RSIGVSN----FNTKQL-ETLLGVARIKPVTNQARYLFLIEVHPY 180 (773)
Q Consensus 115 ~~~~d~~~~~~e~~~aL~~L~~~Gk--I-------r~iGvSn----~~~~~l-~~~~~~a~~~~~~~Q~~ysl~~~~~p~ 180 (773)
....+.+++++..++|+++|. | -++|.-. ++...| +++.+..++. -+.+.. .+|.
T Consensus 170 ----~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~----riR~~~---~~P~ 238 (437)
T COG0621 170 ----ERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIE----RIRFGS---SHPL 238 (437)
T ss_pred ----ccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhcCCCce----EEEEec---CCch
Confidence 245688999999999999996 2 3444443 222222 2332322211 122222 2566
Q ss_pred cchHHHHHHHHhC-CcEEEEeccCCCCCCCCCCCCCCCCChHHHHHHHHHhCCCHHHHhHhCcccCCC--CCHHHHHHHh
Q psy15065 181 LTQKKMAAFCRDN-DLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDIASRYDKTPAQIQLGNITVPKS--VTKSRLEENR 257 (773)
Q Consensus 181 ~~~~~li~~~~~~-gI~v~a~spL~~g~~~~~~~~~~~~~~~~l~~iA~~~g~s~aqvAL~~vvi~g~--~~~~ql~enl 257 (773)
...+++++..++. .+--.-.-|+-+|.+........-.......++.++.......++|+.-+|+|- -|.+..++.+
T Consensus 239 ~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~tl 318 (437)
T COG0621 239 EFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEETL 318 (437)
T ss_pred hcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHHHH
Confidence 6678999998885 444444456655543221111222334566667677666666777776666664 3444444433
No 99
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=26.94 E-value=1.7e+02 Score=33.61 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhC-CCCceeeeeccC
Q psy15065 596 NYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKG-TIKPVVNQVECH 645 (773)
Q Consensus 596 ~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~-~~~~~~~Q~~~~ 645 (773)
++.|+++-.++.+++|+..+||+-..-++-++++++.+ .++++.-|...|
T Consensus 209 ~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaH 259 (545)
T TIGR01228 209 SLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAH 259 (545)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCccc
Confidence 45699999999999999999999999999999999865 345666776654
No 100
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=26.27 E-value=80 Score=25.47 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHH
Q psy15065 690 KIKEIAAKYNKTSAQILIKYQV 711 (773)
Q Consensus 690 ~l~~ia~~~g~s~aqlaL~w~l 711 (773)
.+.+||+++|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4578999999999999999986
No 101
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=25.96 E-value=5.4e+02 Score=27.17 Aligned_cols=164 Identities=6% Similarity=0.010 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEe
Q psy15065 65 ITFYSSPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIG 144 (773)
Q Consensus 65 ~~~~~~~~~i~~~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iG 144 (773)
+...++.+.+.+-.+. |.++|+|+|++-+.........+. ....-.+.++.+.++.+ +..+..+
T Consensus 13 ~~~~f~~~~~~~ia~~-L~~~GVd~IEvG~~~~~~~~~~~~--------------~~~~~~~~~~~i~~~~~-~~~~~~~ 76 (266)
T cd07944 13 NNWDFGDEFVKAIYRA-LAAAGIDYVEIGYRSSPEKEFKGK--------------SAFCDDEFLRRLLGDSK-GNTKIAV 76 (266)
T ss_pred cCccCCHHHHHHHHHH-HHHCCCCEEEeecCCCCccccCCC--------------ccCCCHHHHHHHHhhhc-cCCEEEE
Q ss_pred ccCCCHHHHHHHHHhcCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChHHHH
Q psy15065 145 VSNFNTKQLETLLGVARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVK 224 (773)
Q Consensus 145 vSn~~~~~l~~~~~~a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~~l~ 224 (773)
++......++.+....+..+..+.+.+..-.-.. -.+.+++++++|+.+...-.-+... ..+.+.
T Consensus 77 ~~~~~~~~~~~l~~a~~~gv~~iri~~~~~~~~~----~~~~i~~ak~~G~~v~~~~~~a~~~-----------~~~~~~ 141 (266)
T cd07944 77 MVDYGNDDIDLLEPASGSVVDMIRVAFHKHEFDE----ALPLIKAIKEKGYEVFFNLMAISGY-----------SDEELL 141 (266)
T ss_pred EECCCCCCHHHHHHHhcCCcCEEEEecccccHHH----HHHHHHHHHHCCCeEEEEEEeecCC-----------CHHHHH
Q ss_pred HHHHHhCCCHHHHhHhCcccCCCCCHHHHHHHhccc
Q psy15065 225 DIASRYDKTPAQIQLGNITVPKSVTKSRLEENRDIF 260 (773)
Q Consensus 225 ~iA~~~g~s~aqvAL~~vvi~g~~~~~ql~enl~a~ 260 (773)
+++++..-..+. .+..+=-.|.-+|+++.+-++++
T Consensus 142 ~~~~~~~~~g~~-~i~l~DT~G~~~P~~v~~lv~~l 176 (266)
T cd07944 142 ELLELVNEIKPD-VFYIVDSFGSMYPEDIKRIISLL 176 (266)
T ss_pred HHHHHHHhCCCC-EEEEecCCCCCCHHHHHHHHHHH
No 102
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=25.19 E-value=5.3e+02 Score=26.94 Aligned_cols=65 Identities=8% Similarity=-0.050 Sum_probs=40.0
Q ss_pred HHHHHHcCCe-eEEecccchHHHHHHHHHhCCCCceeeeeccCCcCCh--HHHHHHHHhcCceEEEecC
Q psy15065 604 MEKLVADGLV-KSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQ--HKLKQWCEERQILITAYSP 669 (773)
Q Consensus 604 Le~l~~~GkI-r~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~--~~l~~~~~~~gI~via~sp 669 (773)
|.+..++|+. -...++..++ .+.+.+...+++.+++=.|..+...+ ..++..|+..|+.++..-|
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p-~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADP-YAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCc-HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 4555666885 2233333444 44555555568999888888886543 2466667777777776643
No 103
>PRK07534 methionine synthase I; Validated
Probab=25.17 E-value=9.4e+02 Score=26.41 Aligned_cols=119 Identities=8% Similarity=0.008 Sum_probs=67.3
Q ss_pred ccCC-HHHHHHHHHHHHHcCCCEEEcCCCCCC---------HHHHHHHHHhhHh--c--CCCCCCcEEEEeccCCCCC--
Q psy15065 5 FQSL-EREVYEAVCHAIDLGYRHFDCAYYYQN---------EGQIGEAIQDKIS--Q--GVITREDIFITTKLWITFY-- 68 (773)
Q Consensus 5 ~~~~-~~~a~~~l~~Al~~Gin~iDTA~~Yg~---------E~~iG~aL~~~~~--~--~~~~R~~v~I~TK~~~~~~-- 68 (773)
|..+ ++.+.++=+.++++|-+.|=|.....| |..+.+..+..+. + ....+.+++|+-=+++...
T Consensus 39 wsi~~Pe~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~~~~~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l 118 (336)
T PRK07534 39 WNEDHPDNITALHQGFVDAGSDIILTNSFGGTAARLKLHDAQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIM 118 (336)
T ss_pred hcccCHHHHHHHHHHHHHhcCCEEEecCcccCHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCcccc
Confidence 4443 455666666788999999986654223 2222222222111 0 0001235777777765321
Q ss_pred -----CCHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceE
Q psy15065 69 -----SSPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSI 143 (773)
Q Consensus 69 -----~~~~~i~~~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~i 143 (773)
.+.+.+......-++.|--..+|++++-- ...+.|+..+++-+++.|+=-.+
T Consensus 119 ~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET-----------------------~p~l~E~~a~~~~~~~~~~Pv~v 175 (336)
T PRK07534 119 EPMGALTHALAVEAFHEQAEGLKAGGADVLWVET-----------------------ISAPEEIRAAAEAAKLAGMPWCG 175 (336)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEec-----------------------cCCHHHHHHHHHHHHHcCCeEEE
Confidence 24556666776667777445589998873 23566777777777666664444
Q ss_pred ecc
Q psy15065 144 GVS 146 (773)
Q Consensus 144 GvS 146 (773)
.+|
T Consensus 176 Sft 178 (336)
T PRK07534 176 TMS 178 (336)
T ss_pred EEE
Confidence 444
No 104
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=25.11 E-value=3.9e+02 Score=28.04 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCCceeeeeccCCcCChHHHHHHHHhcCceEEEecCCC
Q psy15065 599 DTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQHKLKQWCEERQILITAYSPLG 671 (773)
Q Consensus 599 e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~via~spL~ 671 (773)
.....++.+++.-++- +.+-+++++.++++++.+ .+.+|-+... ..+.++++.++++|..++....-+
T Consensus 63 rl~~~v~~l~~~~~~p-iSIDT~~~~v~~aaL~~g--~~iINdis~~--~~~~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 63 RVIPVLRALAGEPDVP-ISVDTFNAEVAEAALKAG--ADIINDVSGG--RGDPEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred HHHHHHHHHHhcCCCe-EEEeCCcHHHHHHHHHhC--CCEEEeCCCC--CCChHHHHHHHHcCCCEEEECcCC
Confidence 3445566665553332 788899999999999987 4555555433 222689999999999888875443
No 105
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.82 E-value=2e+02 Score=24.55 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=42.3
Q ss_pred HHHHHHcCCeeEEecccchHHHHHHHHHhCCCCceeeeeccCCcCChHHHHHHHHhcCceEEEec
Q psy15065 604 MEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQHKLKQWCEERQILITAYS 668 (773)
Q Consensus 604 Le~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~via~s 668 (773)
++++.+.||+. ....+..++++.+....++.--+.++ .....+..+|++++|.++-+.
T Consensus 3 ~~~~~ragkl~------~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV------IGTKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE------EcHHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 56778888753 23567788888888777776666665 345678899999999998664
No 106
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=24.21 E-value=4.5e+02 Score=27.15 Aligned_cols=110 Identities=12% Similarity=0.050 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcC-CcceEeccCC
Q psy15065 70 SPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEG-LARSIGVSNF 148 (773)
Q Consensus 70 ~~~~i~~~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~G-kIr~iGvSn~ 148 (773)
+.+...+-++ .|.++|+++|.+-..-.+.. .....+.++.++.+.+.+ +++...++.-
T Consensus 17 s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~--------------------~p~~~~~~~~i~~l~~~~~~~~~~~l~~~ 75 (265)
T cd03174 17 STEDKLEIAE-ALDEAGVDSIEVGSGASPKA--------------------VPQMEDDWEVLRAIRKLVPNVKLQALVRN 75 (265)
T ss_pred CHHHHHHHHH-HHHHcCCCEEEeccCcCccc--------------------cccCCCHHHHHHHHHhccCCcEEEEEccC
Confidence 5555554444 47889999998865442200 011245678888898888 6777777765
Q ss_pred CHHHHHHHHHhcCCCeEEEcccchhh---h--hcC---cccchHHHHHHHHhCCcEEEEec
Q psy15065 149 NTKQLETLLGVARIKPVTNQARYLFL---I--EVH---PYLTQKKMAAFCRDNDLVITAYS 201 (773)
Q Consensus 149 ~~~~l~~~~~~a~~~~~~~Q~~ysl~---~--~~~---p~~~~~~li~~~~~~gI~v~a~s 201 (773)
....++.+.+. +++.+.+-..-+-. . ... -...-.+.++++++.|+.+...-
T Consensus 76 ~~~~i~~a~~~-g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 76 REKGIERALEA-GVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred chhhHHHHHhC-CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56667666654 33222222111100 0 000 00012356788999998876554
No 107
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=24.20 E-value=8.5e+02 Score=25.57 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=43.3
Q ss_pred HHHHHHHHHHc-CCeeEEecccchHHHHHHHHHhCCCCceeeeeccCCcCChHHHHHHHHhcCceEEEec
Q psy15065 600 TWLEMEKLVAD-GLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQHKLKQWCEERQILITAYS 668 (773)
Q Consensus 600 ~~~aLe~l~~~-GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~via~s 668 (773)
....++.+++. +. -+.+=+++++.++++++.| . ..+|-+..-. ..++++.++++|..++...
T Consensus 63 l~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G-~-~iINsis~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 63 VVPVIKALRDQPDV--PISVDTYRAEVARAALEAG-A-DIINDVSGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred HHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcC-C-CEEEECCCCC---CchhHHHHHHcCCcEEEEe
Confidence 44455555555 43 2677789999999999885 3 3455554432 5679999999999998854
No 108
>PRK05588 histidinol-phosphatase; Provisional
Probab=23.68 E-value=6.3e+02 Score=26.24 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEcCCCCC-----C---HHHHHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHH
Q psy15065 9 EREVYEAVCHAIDLGYRHFDCAYYYQ-----N---EGQIGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQE 80 (773)
Q Consensus 9 ~~~a~~~l~~Al~~Gin~iDTA~~Yg-----~---E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~ 80 (773)
.+...+.+++|.+.|+..+ .+++.- . ...+-+.+... .+ .+.-+|.+.--++... + ....+++
T Consensus 15 ~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i-~~--~~~~~I~~GiE~~~~~----~-~~~~~~~ 85 (255)
T PRK05588 15 KMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKY-SK--YRNNKLLLGIELGMEK----D-LIEENKE 85 (255)
T ss_pred ccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHH-HH--HhcCCcceEEEecccC----C-CHHHHHH
Confidence 3467899999999999988 666631 0 00111111111 10 1113454444443322 2 2556677
Q ss_pred HHHHcCCCcccEEEEecC
Q psy15065 81 SLDLLQMDYVNLYLMHWP 98 (773)
Q Consensus 81 SL~rLgtDyiDl~~lH~P 98 (773)
.|++...||+ +.-+|+.
T Consensus 86 ~l~~~~~D~v-igSvH~~ 102 (255)
T PRK05588 86 LINKYEFDYV-IGSIHLV 102 (255)
T ss_pred HHhhCCCCeE-EEeEEee
Confidence 8888888888 7888975
No 109
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=23.21 E-value=5.6e+02 Score=27.01 Aligned_cols=67 Identities=13% Similarity=0.067 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCCeeEEecccchHHHHHHHHHhCCCCceeeeeccCCcCChHHHHHHHHhcCceEEEec
Q psy15065 600 TWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQHKLKQWCEERQILITAYS 668 (773)
Q Consensus 600 ~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~via~s 668 (773)
....++.+.+.-.+ -+-+-+++++.++++++...-.+.+|-+.... ....++++.++++|+.++...
T Consensus 57 ~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINsIs~~~-~~~~~~~~l~~~~g~~vv~m~ 123 (261)
T PRK07535 57 MEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINSVSAEG-EKLEVVLPLVKKYNAPVVALT 123 (261)
T ss_pred HHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEeCCCCC-ccCHHHHHHHHHhCCCEEEEe
Confidence 33444555443222 36777899999999999733245666665432 224578999999999888764
No 110
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=23.15 E-value=5.4e+02 Score=25.21 Aligned_cols=99 Identities=12% Similarity=0.013 Sum_probs=57.6
Q ss_pred HHHHHHcC-CeeEEecccchHHHHH------HHHHhC-CCCceeeeeccCCcCCh---------------HHHHHHHHhc
Q psy15065 604 MEKLVADG-LVKSIGVSNFNSKQIQ------DILDKG-TIKPVVNQVECHPYLTQ---------------HKLKQWCEER 660 (773)
Q Consensus 604 Le~l~~~G-kIr~iGvSn~~~~~l~------~~~~~~-~~~~~~~Q~~~~~~~~~---------------~~l~~~~~~~ 660 (773)
|.+....+ .|...|++..+..++. .++... ..+.+++++-.|-.... ..+++.++++
T Consensus 27 l~~~~~~~~~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~ 106 (198)
T cd01821 27 LPQYLDTGITVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAK 106 (198)
T ss_pred HHHHhCCCCEEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHC
Confidence 44333334 5888999998876543 344332 45677777655543221 3588889999
Q ss_pred CceEEEecCCCCCCCCCCC-CCCCCCCCcHHHHHHHHHhCCCH
Q psy15065 661 QILITAYSPLGSPDRPWAK-PGDPSLLDDPKIKEIAAKYNKTS 702 (773)
Q Consensus 661 gI~via~spL~~g~~~~~~-~~~~~~~~~~~l~~ia~~~g~s~ 702 (773)
|..++-.+|.......... .........+.++++|+++|+..
T Consensus 107 ~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 107 GATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred CCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCE
Confidence 9988888876432111000 00011112467889999998864
No 111
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=22.71 E-value=9.8e+02 Score=25.78 Aligned_cols=78 Identities=9% Similarity=0.107 Sum_probs=56.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCe-eEEecccc---hHHHHHHHHHhCC-CCceeeeeccCCcCChHHHHHHHHhcCceEEEe
Q psy15065 593 SDANYVDTWLEMEKLVADGLV-KSIGVSNF---NSKQIQDILDKGT-IKPVVNQVECHPYLTQHKLKQWCEERQILITAY 667 (773)
Q Consensus 593 ~~~~~~e~~~aLe~l~~~GkI-r~iGvSn~---~~~~l~~~~~~~~-~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~via~ 667 (773)
.+.+-.|+.+.||++.++=++ -.||=|.. +++.++++.+.+. -++.... .|+-..-..+.+.+.++|-.|++|
T Consensus 180 ~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaS--anldlDy~~ia~AA~ky~H~VLsw 257 (403)
T COG2069 180 KDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLAS--ANLDLDYERIAEAALKYDHVVLSW 257 (403)
T ss_pred cCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeec--cccccCHHHHHHHHHhcCceEEEe
Confidence 356778999999999999887 56788864 6677888877543 3333322 333333467899999999999999
Q ss_pred cCCCC
Q psy15065 668 SPLGS 672 (773)
Q Consensus 668 spL~~ 672 (773)
+++--
T Consensus 258 t~~D~ 262 (403)
T COG2069 258 TQMDV 262 (403)
T ss_pred eccCh
Confidence 98853
No 112
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=22.51 E-value=9e+02 Score=25.25 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCCcceEeccCCCHHHHHHHHHhcCCCeEEEcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCC
Q psy15065 125 VDVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVARIKPVTNQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLS 204 (773)
Q Consensus 125 ~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~~~~~~a~~~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~ 204 (773)
+.....++.+++.-++ -|-|-+++++.++++++.. .+..|-+.. . ....++++.++++|..++....-+
T Consensus 62 ~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g--~~iINdis~------~--~~~~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 62 ERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAG--ADIINDVSG------G--RGDPEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred HHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhC--CCEEEeCCC------C--CCChHHHHHHHHcCCCEEEECcCC
Confidence 3455566666655233 3788889999999999875 344443211 1 002678999999999888875443
Q ss_pred CCCCCCCCCCCCCCCh--------HHHHHHHHHhCCCHHHHhHhC
Q psy15065 205 NPTNPFRAKVPFVLED--------QTVKDIASRYDKTPAQIQLGN 241 (773)
Q Consensus 205 ~g~~~~~~~~~~~~~~--------~~l~~iA~~~g~s~aqvAL~~ 241 (773)
.+... ...+..... ....+.+.+.|++..++.+--
T Consensus 131 ~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDP 173 (258)
T cd00423 131 TPQTM--QNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDP 173 (258)
T ss_pred CCccc--ccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeC
Confidence 33211 111111111 233345667788888876653
No 113
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=22.45 E-value=9.9e+02 Score=25.74 Aligned_cols=78 Identities=19% Similarity=0.150 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCcc-eEeccCC---CHHHHHHHHHhcCC-CeEEEcccchhhhhcCcccchHHHHHHHHhCC
Q psy15065 120 DSVDYVDVWKTMECLVDEGLAR-SIGVSNF---NTKQLETLLGVARI-KPVTNQARYLFLIEVHPYLTQKKMAAFCRDND 194 (773)
Q Consensus 120 ~~~~~~e~~~aL~~L~~~GkIr-~iGvSn~---~~~~l~~~~~~a~~-~~~~~Q~~ysl~~~~~p~~~~~~li~~~~~~g 194 (773)
.+++..|+.+.|+++.++=+|- .||=|.. +++.++++.+.+.- ++.....+.+ ..-..+.+.|.++|
T Consensus 180 ~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSanld--------lDy~~ia~AA~ky~ 251 (403)
T COG2069 180 KDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASANLD--------LDYERIAEAALKYD 251 (403)
T ss_pred cCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeeccccc--------cCHHHHHHHHHhcC
Confidence 4578899999999999987765 5777764 57788888877752 2222111111 11356889999999
Q ss_pred cEEEEeccCCC
Q psy15065 195 LVITAYSPLSN 205 (773)
Q Consensus 195 I~v~a~spL~~ 205 (773)
-.|++|+++--
T Consensus 252 H~VLswt~~D~ 262 (403)
T COG2069 252 HVVLSWTQMDV 262 (403)
T ss_pred ceEEEeeccCh
Confidence 99999999854
No 114
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=22.07 E-value=7.8e+02 Score=27.24 Aligned_cols=158 Identities=13% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcceEeccCCCHHHHH
Q psy15065 75 RKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQLE 154 (773)
Q Consensus 75 ~~~le~SL~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr~iGvSn~~~~~l~ 154 (773)
+..+-+.|.++|+++|++-..-.| .....+.+.-+.++.+.+...+++.++.- +...++
T Consensus 70 Ki~ia~~L~~~GV~~IEvGs~vsp--------------------k~vPqmad~~ev~~~i~~~~~~~~~~l~~-n~~die 128 (347)
T PLN02746 70 KVELIQRLVSSGLPVVEATSFVSP--------------------KWVPQLADAKDVMAAVRNLEGARFPVLTP-NLKGFE 128 (347)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCc--------------------ccccccccHHHHHHHHHhccCCceeEEcC-CHHHHH
Q ss_pred HHHHhcCCCeEEEcccchhhhhcCcccch--------HHHHHHHHhCCcEEEEeccCCCCCCCCCCCCCCCCChHHHHHH
Q psy15065 155 TLLGVARIKPVTNQARYLFLIEVHPYLTQ--------KKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDI 226 (773)
Q Consensus 155 ~~~~~a~~~~~~~Q~~ysl~~~~~p~~~~--------~~li~~~~~~gI~v~a~spL~~g~~~~~~~~~~~~~~~~l~~i 226 (773)
.+++ ++.+.+.+-+.-|-.....-.... .+++++|+++|+.+.++-...=+. ......+.+.+.++
T Consensus 129 ~A~~-~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~-----p~~~r~~~~~l~~~ 202 (347)
T PLN02746 129 AAIA-AGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGC-----PIEGPVPPSKVAYV 202 (347)
T ss_pred HHHH-cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecC-----CccCCCCHHHHHHH
Q ss_pred HHHhCCCHHHHhHhCcccCCCCCHHHHHHHhccc
Q psy15065 227 ASRYDKTPAQIQLGNITVPKSVTKSRLEENRDIF 260 (773)
Q Consensus 227 A~~~g~s~aqvAL~~vvi~g~~~~~ql~enl~a~ 260 (773)
+++.--.-+. .+...=-.|.-+|.++.+-++++
T Consensus 203 ~~~~~~~Gad-~I~l~DT~G~a~P~~v~~lv~~l 235 (347)
T PLN02746 203 AKELYDMGCY-EISLGDTIGVGTPGTVVPMLEAV 235 (347)
T ss_pred HHHHHHcCCC-EEEecCCcCCcCHHHHHHHHHHH
No 115
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=21.90 E-value=2.4e+02 Score=32.61 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHHHcCCeeEEecccchHHHHHHHHHhC-CCCceeeeeccC
Q psy15065 596 NYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKG-TIKPVVNQVECH 645 (773)
Q Consensus 596 ~~~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~-~~~~~~~Q~~~~ 645 (773)
++.|+++-.++.+++|+..+||+-..-.+-++++++.+ .++++.-|..+|
T Consensus 208 ~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 208 DLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSAH 258 (546)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SSTT
T ss_pred CHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCccc
Confidence 46799999999999999999999999999999998865 346667777665
No 116
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=21.34 E-value=1.1e+03 Score=25.63 Aligned_cols=153 Identities=13% Similarity=0.094 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCCCCCCHHHHHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHHHHcCC
Q psy15065 8 LEREVYEAVCHAIDLGYRHFDCAYYYQNEGQIGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQESLDLLQM 87 (773)
Q Consensus 8 ~~~~a~~~l~~Al~~Gin~iDTA~~Yg~E~~iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~SL~rLgt 87 (773)
++++..+.+..+.+.|++.|=.--.=..+...=+++++. .+ ++-|.-=.. ...+++... .+ +.|+.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~d~~~v~~vr~~-----~~--~~~l~vDaN--~~~~~~~a~-~~-~~l~~--- 197 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKITPQIMHQLVKLRRLR-----FP--QIPLVIDAN--ESYDLQDFP-RL-KELDR--- 197 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCchhHHHHHHHHHh-----CC--CCcEEEECC--CCCCHHHHH-HH-HHHhh---
Confidence 456677777888899999873211001112222334432 22 233332221 122444432 12 33333
Q ss_pred CcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCCcc-eEeccCCCHHHHHHHHHhcCCCeEE
Q psy15065 88 DYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGLAR-SIGVSNFNTKQLETLLGVARIKPVT 166 (773)
Q Consensus 88 DyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~GkIr-~iGvSn~~~~~l~~~~~~a~~~~~~ 166 (773)
.++.++-.|.. .+.++.+.+|++...+. +.|=|.++.+.+..++....++ +
T Consensus 198 --~~~~~iEeP~~------------------------~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d--v 249 (324)
T TIGR01928 198 --YQLLYIEEPFK------------------------IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVK--V 249 (324)
T ss_pred --CCCcEEECCCC------------------------hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCC--E
Confidence 35666666521 23467788888876555 7788889999999988765543 3
Q ss_pred EcccchhhhhcCcccchHHHHHHHHhCCcEEEEeccCCC
Q psy15065 167 NQARYLFLIEVHPYLTQKKMAAFCRDNDLVITAYSPLSN 205 (773)
Q Consensus 167 ~Q~~ysl~~~~~p~~~~~~li~~~~~~gI~v~a~spL~~ 205 (773)
+|+..+.+-.. ..-..+..+|+++|+.++..+-+.+
T Consensus 250 i~~d~~~~GGi---t~~~~~~~~A~~~gi~~~~~~~~es 285 (324)
T TIGR01928 250 INIKPGRLGGL---TEVQKAIETCREHGAKVWIGGMLET 285 (324)
T ss_pred EEeCcchhcCH---HHHHHHHHHHHHcCCeEEEcceEcc
Confidence 35433321101 1135789999999999987665543
No 117
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=20.58 E-value=2.9e+02 Score=33.33 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=74.3
Q ss_pred HHHHHHcCCeeEEecccchHHHHHHHHHh----CCCCceeeeeccCCcCChHHHHHHHHhcCceEEEecCCCCCCCCCCC
Q psy15065 604 MEKLVADGLVKSIGVSNFNSKQIQDILDK----GTIKPVVNQVECHPYLTQHKLKQWCEERQILITAYSPLGSPDRPWAK 679 (773)
Q Consensus 604 Le~l~~~GkIr~iGvSn~~~~~l~~~~~~----~~~~~~~~Q~~~~~~~~~~~l~~~~~~~gI~via~spL~~g~~~~~~ 679 (773)
++.+....++-.+-=++.+.+.+.++.+. ..--.+.+.+++.-..++..+.+++.+-++-++.-++=
T Consensus 147 ~~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~--------- 217 (647)
T PRK00087 147 AEKLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKN--------- 217 (647)
T ss_pred HhhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCC---------
Confidence 34443345666666667777766666542 11112345555556666788999999988877753322
Q ss_pred CCCCCCCCcHHHHHHHHHhCC------CHHHHHHHHHHhCCcE-EeeCCCCHHHHHHh
Q psy15065 680 PGDPSLLDDPKIKEIAAKYNK------TSAQILIKYQVQQGNI-CIPKSVTPSRIEEN 730 (773)
Q Consensus 680 ~~~~~~~~~~~l~~ia~~~g~------s~aqlaL~w~l~~~~v-~i~G~~~~~~l~en 730 (773)
......|.++|++.|. ++.++.-.|+-....| +..|+|+|+.+-+.
T Consensus 218 -----SsNt~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP~~~i~~ 270 (647)
T PRK00087 218 -----SSNTTKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTPDWIIEE 270 (647)
T ss_pred -----CccHHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCCHHHHHH
Confidence 2233589999999874 6789999998876665 46699999976443
No 118
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=20.49 E-value=8e+02 Score=26.63 Aligned_cols=106 Identities=11% Similarity=0.013 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCCCCHHH----HHHHHHhhHhcCCCCCCcEEEEeccCCCCCCCHHHHHHHHHHHH
Q psy15065 7 SLEREVYEAVCHAIDLGYRHFDCAYYYQNEGQ----IGEAIQDKISQGVITREDIFITTKLWITFYSSPDLIRKCLQESL 82 (773)
Q Consensus 7 ~~~~~a~~~l~~Al~~Gin~iDTA~~Yg~E~~----iG~aL~~~~~~~~~~R~~v~I~TK~~~~~~~~~~~i~~~le~SL 82 (773)
.+.++..++++.+.+.|+..|-- .|.|.. +-+.++...+.+. ..++.|+|=.. .+.+ .-..|
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~---tGGEPllr~dl~~li~~i~~~~~--l~~i~itTNG~--------ll~~-~~~~L 110 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRL---TGGEPLVRRGCDQLVARLGKLPG--LEELSLTTNGS--------RLAR-FAAEL 110 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE---ECcCCCccccHHHHHHHHHhCCC--CceEEEEeChh--------HHHH-HHHHH
Confidence 46788999999999999987753 343322 3344443211111 22566665421 1222 33456
Q ss_pred HHcCCCcccEEEEecCCCCCCCCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q psy15065 83 DLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTMECLVDEGL 139 (773)
Q Consensus 83 ~rLgtDyiDl~~lH~P~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~aL~~L~~~Gk 139 (773)
+..|+++|-+ -|+.+.+.. . ......-.++.++++++.+++.|.
T Consensus 111 ~~aGl~~v~I-SlDs~~~e~----~--------~~i~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 111 ADAGLKRLNI-SLDTLRPEL----F--------AALTRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred HHcCCCeEEE-EeccCCHHH----h--------hhhcCCCCHHHHHHHHHHHHHcCC
Confidence 6778776653 334321100 0 001112346778888888877763
No 119
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=20.42 E-value=1.3e+03 Score=26.39 Aligned_cols=178 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred CeEecCCCCCCHHHHHHHHHhhhhcCCCCCCCeEEEecCCCCCCChhhHHHHHHHHHHhcCCCc----eeEEEeecccch
Q psy15065 457 RHIDCAHVYENEDEVGDAIAQKLKDNVVKREDLYITSKLWNTFHRPDLVKPALQKTLQNLKLDY----LDLYLIHWPQAY 532 (773)
Q Consensus 457 n~fDTA~~YgsE~~lG~~l~~~~~~~~~~R~~v~I~TK~~~~~~~~~~i~~~le~SL~~L~~dy----iDl~~lH~p~~~ 532 (773)
++-+..-+||+|+-+-++|++..+.. +..+++...-......-.+.+..-+++.-+.++-++ +.++.+|.|.
T Consensus 60 ~l~E~d~VfGG~~~L~~~I~~~~~~~--~~p~~I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpg-- 135 (454)
T cd01973 60 SLHEDSAVFGGAKRVEEGVLVLARRY--PDLRVIPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPS-- 135 (454)
T ss_pred cCCCCceEECcHHHHHHHHHHHHHhc--CCCCEEEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCC--
Q ss_pred hhhhhhhhhhhhhhhhccccccccCCCCccchhhhhhcccCCCCCCCCCCCCCcCCCcccCCCcHHHHHHHHHHHHH---
Q psy15065 533 KALQNLKLDYLDLYLIHWPQAYKVSNDFPCAVTREMAFRLSPHIEGDTLFPADANGKTLYSDANYVDTWLEMEKLVA--- 609 (773)
Q Consensus 533 ~~l~~l~~d~iD~~~~h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~--- 609 (773)
+..........+++.+++
T Consensus 136 -----------------------------------------------------------F~Gs~~~G~~~a~~ali~~~~ 156 (454)
T cd01973 136 -----------------------------------------------------------FKGSMVTGYDEAVRSVVKTIA 156 (454)
T ss_pred -----------------------------------------------------------cCCCHHHHHHHHHHHHHHHhc
Q ss_pred -----cCCeeEEe--cccchHHHHHHHHHhCCCCceee-----------------------------------eeccCCc
Q psy15065 610 -----DGLVKSIG--VSNFNSKQIQDILDKGTIKPVVN-----------------------------------QVECHPY 647 (773)
Q Consensus 610 -----~GkIr~iG--vSn~~~~~l~~~~~~~~~~~~~~-----------------------------------Q~~~~~~ 647 (773)
+++|--|| .+--+.+++.++++..++++.+. -+-+...
T Consensus 157 ~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~~d~~~~d~~~~~~~~~~~~g~~~~~~i~~~~~A~~niv~~~~ 236 (454)
T cd01973 157 KKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANILMDTEDFDSPMLPDKSAVTHGNTTIEDIADSANAIATIALARY 236 (454)
T ss_pred ccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEeeccccccCCCCCcccccCCCCCCHHHHHHhhhCcEEEEEChh
Q ss_pred CChHHHHHHHHhcCceEEEec-CCCCCCCCCCCCCCCCCCCcHHHHHHHHHhCCCHHHHHHHH
Q psy15065 648 LTQHKLKQWCEERQILITAYS-PLGSPDRPWAKPGDPSLLDDPKIKEIAAKYNKTSAQILIKY 709 (773)
Q Consensus 648 ~~~~~l~~~~~~~gI~via~s-pL~~g~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlaL~w 709 (773)
....--..+-++.||..+..+ |.|- ...+.-+++|++..|.+..+...+.
T Consensus 237 ~~~~~A~~Le~~fGiPyi~~~~P~G~------------~~T~~~l~~ia~~~g~~~~e~i~~e 287 (454)
T cd01973 237 EGGKAAEFLQKKFDVPAILGPTPIGI------------KNTDAFLQNIKELTGKPIPESLVRE 287 (454)
T ss_pred hhHHHHHHHHHHHCCCeeccCCCcCh------------HHHHHHHHHHHHHHCCCCCHHHHHH
No 120
>PLN02444 HMP-P synthase
Probab=20.19 E-value=1.4e+03 Score=26.95 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=33.7
Q ss_pred eEEecccchHHHHHHHHHhCCCCceeeeeccCCcCC-hHHHHHHHHhcCceEEEecCCCCCCCCCC
Q psy15065 614 KSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLT-QHKLKQWCEERQILITAYSPLGSPDRPWA 678 (773)
Q Consensus 614 r~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~-~~~l~~~~~~~gI~via~spL~~g~~~~~ 678 (773)
|-.|+-+-.-.-+...+....- -|++.. -.++++.|++++|.+- ||.|.++..
T Consensus 334 R~tgIVSRGGSi~a~Wml~~~k--------ENPlYe~FD~ileI~k~YDVtlS----LGDGLRPG~ 387 (642)
T PLN02444 334 RMTGIVSRGGSIHAKWCLAYHK--------ENFAYEHWDDILDICNQYDIALS----IGDGLRPGS 387 (642)
T ss_pred cccCceeCCcHHHHHHHHHcCC--------cCchHHHHHHHHHHHHHhCeeee----ccCCcCCCc
Confidence 7777776665555555543221 133333 3689999999999874 777765543
Done!