RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15065
(773 letters)
>gnl|CDD|223729 COG0656, ARA1, Aldo/keto reductases, related to diketogulonate
reductase [General function prediction only].
Length = 280
Score = 328 bits (843), Expect = e-107
Identities = 124/338 (36%), Positives = 176/338 (52%), Gaps = 74/338 (21%)
Query: 419 PFVTFNNGLKFPIFGLGTWKSKKGE-VKQAVGYAIDIGYRHIDCAHVYENEDEVGDAIAQ 477
VT NNG++ P GLGTW+ E +AV A+++GYR ID A +Y NE+EVG+AI
Sbjct: 4 TKVTLNNGVEIPAIGLGTWQIGDDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAI-- 61
Query: 478 KLKDNVVKREDLYITSKLWNTFHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQN 537
K++ V RE+L+IT+K+W + D AL +L+
Sbjct: 62 --KESGVPREELFITTKVWPSDLGYDETLKAL----------------------EASLKR 97
Query: 538 LKLDYLDLYLIHWPQAYKVSNDFPCAVTREMAFRLSPHIEGDTLFPADANGKTLYSDANY 597
L LDY+DLYLIHWP K
Sbjct: 98 LGLDYVDLYLIHWPVPNK--------------------------------------YVVI 119
Query: 598 VDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQHKLKQWC 657
+TW +E+LV +GL+++IGVSNF + ++++L +KP VNQ+E HPYL Q +L +C
Sbjct: 120 EETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPELLPFC 179
Query: 658 EERQILITAYSPLGSPDRPWAKPGDPSLLDDPKIKEIAAKYNKTSAQILIKYQVQQGNIC 717
+ I + AYSPL + LLD+P + EIA KY KT AQ+ +++ +Q+G I
Sbjct: 180 QRHGIAVEAYSPLAKGGK---------LLDNPVLAEIAKKYGKTPAQVALRWHIQRGVIV 230
Query: 718 IPKSVTPSRIEENAQIFDFELAPEDIQTIDSFNRNHRF 755
IPKS TP RI EN FDFEL+ ED+ ID+ +R +
Sbjct: 231 IPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268
Score = 287 bits (736), Expect = 2e-91
Identities = 113/279 (40%), Positives = 152/279 (54%), Gaps = 43/279 (15%)
Query: 9 EREVYEAVCHAIDLGYRHFDCAYYYQNEGQIGEAIQDKISQGVITREDIFITTKLWITFY 68
+ AV A++LGYR D A Y NE ++GEAI++ + RE++FITTK+W +
Sbjct: 27 DEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKE----SGVPREELFITTKVWPSDL 82
Query: 69 SSPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVW 128
D K L+ SL L +DYV+LYL+HWP V + W
Sbjct: 83 G-YDETLKALEASLKRLGLDYVDLYLIHWPVPN------------------KYVVIEETW 123
Query: 129 KTMECLVDEGLARSIGVSNFNTKQLETLLGVARIKPVTNQARYLFLIEVHPYLTQKKMAA 188
K +E LVDEGL R+IGVSNF + LE LL +A++KP NQ IE HPYL Q ++
Sbjct: 124 KALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQ------IEYHPYLRQPELLP 177
Query: 189 FCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDIASRYDKTPAQ------IQLGNI 242
FC+ + + + AYSPL AK +L++ + +IA +Y KTPAQ IQ G I
Sbjct: 178 FCQRHGIAVEAYSPL--------AKGGKLLDNPVLAEIAKKYGKTPAQVALRWHIQRGVI 229
Query: 243 TVPKSVTKSRLEENRDIFDFELSQEDMDTLDGLDANGRT 281
+PKS T R+ EN FDFELS+EDM +D LD
Sbjct: 230 VIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268
>gnl|CDD|119408 cd06660, Aldo_ket_red, Aldo-keto reductases (AKRs) are a
superfamily of soluble NAD(P)(H) oxidoreductases whose
chief purpose is to reduce aldehydes and ketones to
primary and secondary alcohols. AKRs are present in all
phyla and are of importance to both health and
industrial applications. Members have very distinct
functions and include the prokaryotic
2,5-diketo-D-gluconic acid reductases and beta-keto
ester reductases, the eukaryotic aldose reductases,
aldehyde reductases, hydroxysteroid dehydrogenases,
steroid 5beta-reductases, potassium channel
beta-subunits and aflatoxin aldehyde reductases, among
others.
Length = 285
Score = 260 bits (667), Expect = 4e-81
Identities = 98/345 (28%), Positives = 156/345 (45%), Gaps = 86/345 (24%)
Query: 424 NNGLKFPIFGLGTWKSKKG-----EVKQAVGYAIDIGYRHIDCAHVY---ENEDEVGDAI 475
GLK GLGTW+ G E AV A+D G ID A VY E+E+ +G+A+
Sbjct: 6 KTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEAL 65
Query: 476 AQKLKDNVVKREDLYITSKLWNTF-----HRPDLVKPALQKTLQNLKLDYLDLYLIHWPQ 530
++ RE+++I +K+ P+ ++ A++++L+ L DY+DLYL+
Sbjct: 66 KERGP-----REEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLL---- 116
Query: 531 AYKALQNLKLDYLDLYLIHWPQAYKVSNDFPCAVTREMAFRLSPHIEGDTLFPADANGKT 590
HWP +P IE
Sbjct: 117 ------------------HWP------------------DPDTPDIE------------- 127
Query: 591 LYSDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQ 650
+T +E+LV +G +++IGVSNF+++Q+++ L + P VNQVE + Q
Sbjct: 128 --------ETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQ 179
Query: 651 HK--LKQWCEERQILITAYSPLGS---PDRPWAKPGDPSLLDDPKIKEIAAKYNKTSAQI 705
+ L +C E I + AYSPL + P +KEIA K+ T AQ+
Sbjct: 180 AEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGDLLEALKEIAEKHGVTPAQV 239
Query: 706 LIKYQVQQ--GNICIPKSVTPSRIEENAQIFDFELAPEDIQTIDS 748
+++ +QQ IP + +P R+EEN DFEL+ ED+ +D+
Sbjct: 240 ALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDA 284
Score = 240 bits (614), Expect = 2e-73
Identities = 96/288 (33%), Positives = 143/288 (49%), Gaps = 51/288 (17%)
Query: 9 EREVYEAVCHAIDLGYRHFDCAYYY---QNEGQIGEAIQDKISQGVITREDIFITTKLWI 65
E E AV A+D G D A Y ++E +GEA++++ RE++FI TK+
Sbjct: 28 EEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGP-----REEVFIATKVGP 82
Query: 66 TFYS----SPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDS 121
SP+ IR+ ++ESL L DY++LYL+HWP D+
Sbjct: 83 RPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWP-------------------DPDT 123
Query: 122 VDYVDVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVARIKPVTNQARYLFLIEVHPYL 181
D + + +E LV EG R+IGVSNF+ +QLE L A + P NQ +E +
Sbjct: 124 PDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQ------VEYNLLD 177
Query: 182 TQKK--MAAFCRDNDLVITAYSPLSNP--TNPFRAKVPFVLED--QTVKDIASRYDKTPA 235
Q + + +CR++ + + AYSPL+ T + P D + +K+IA ++ TPA
Sbjct: 178 RQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGDLLEALKEIAEKHGVTPA 237
Query: 236 QI-------QLGNITV-PKSVTKSRLEENRDIFDFELSQEDMDTLDGL 275
Q+ Q G +V P + + RLEEN DFELS ED+ LD L
Sbjct: 238 QVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285
>gnl|CDD|183203 PRK11565, dkgA, 2,5-diketo-D-gluconate reductase A; Provisional.
Length = 275
Score = 233 bits (595), Expect = 8e-71
Identities = 115/338 (34%), Positives = 171/338 (50%), Gaps = 78/338 (23%)
Query: 417 NFPFVTFNNGLKFPIFGLGTWKSKKGEVKQAVGYAIDIGYRHIDCAHVYENEDEVGDAIA 476
N + +G P GLG W++ EV A+ A+++GYR ID A +Y+NE+ VG A
Sbjct: 3 NPTVIKLQDGNVMPQLGLGVWQASNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKA-- 60
Query: 477 QKLKDNVVKREDLYITSKLWNTFHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQ 536
LK+ V RE+L+IT+KLWN H+ + AL+++L+ L+LDY+DLYL+H
Sbjct: 61 --LKEASVAREELFITTKLWNDDHKR--PREALEESLKKLQLDYVDLYLMH--------- 107
Query: 537 NLKLDYLDLYLIHWPQAYKVSNDFPCAVTREMAFRLSPHIEGDTLFPADANGKTLYSDAN 596
WP P I+ +
Sbjct: 108 -------------WP---------------------VPAID------------------H 115
Query: 597 YVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPYLTQHKLKQW 656
YV+ W M +L +GL+KSIGV NF +Q ++D+ + PV+NQ+E HP + Q +L W
Sbjct: 116 YVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHAW 175
Query: 657 CEERQILITAYSPLGSPDRPWAKPGDPSLLDDPKIKEIAAKYNKTSAQILIKYQVQQGNI 716
+I ++SPL A+ G + D I+++A KY KT AQI+I++ + G +
Sbjct: 176 NATHKIQTESWSPL-------AQGGK-GVFDQKVIRDLADKYGKTPAQIVIRWHLDSGLV 227
Query: 717 CIPKSVTPSRIEENAQIFDFELAPED---IQTIDSFNR 751
IPKSVTPSRI EN +FDF L ++ I +D R
Sbjct: 228 VIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKR 265
Score = 199 bits (507), Expect = 2e-58
Identities = 102/281 (36%), Positives = 153/281 (54%), Gaps = 45/281 (16%)
Query: 6 QSLEREVYEAVCHAIDLGYRHFDCAYYYQNEGQIGEAIQDKISQGVITREDIFITTKLWI 65
Q+ EV A+ A+++GYR D A Y+NE +G+A++ + + RE++FITTKLW
Sbjct: 24 QASNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALK----EASVAREELFITTKLWN 79
Query: 66 TFYSSPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYV 125
+ P R+ L+ESL LQ+DYV+LYLMHWP VP YV
Sbjct: 80 DDHKRP---REALEESLKKLQLDYVDLYLMHWP---------VPAIDH----------YV 117
Query: 126 DVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVARIKPVTNQARYLFLIEVHPYLTQKK 185
+ WK M L EGL +SIGV NF L+ L+ + PV NQ IE+HP + Q++
Sbjct: 118 EAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQ------IELHPLMQQRQ 171
Query: 186 MAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDIASRYDKTPAQIQL------ 239
+ A+ + + ++SPL+ V + + ++D+A +Y KTPAQI +
Sbjct: 172 LHAWNATHKIQTESWSPLAQGGKG-------VFDQKVIRDLADKYGKTPAQIVIRWHLDS 224
Query: 240 GNITVPKSVTKSRLEENRDIFDFELSQEDMDTLDGLDANGR 280
G + +PKSVT SR+ EN D+FDF L ++++ + LD R
Sbjct: 225 GLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKR 265
>gnl|CDD|215817 pfam00248, Aldo_ket_red, Aldo/keto reductase family. This family
includes a number of K+ ion channel beta chain
regulatory domains - these are reported to have
oxidoreductase activity.
Length = 277
Score = 197 bits (503), Expect = 1e-57
Identities = 85/339 (25%), Positives = 143/339 (42%), Gaps = 82/339 (24%)
Query: 432 FGLGTW-----KSKKGEVKQAVGYAIDIGYRHIDCAHVY---ENEDEVGDAIAQKLKDNV 483
GLGTW K E + + A++ G ID A VY +E+ +G+A+ +
Sbjct: 2 LGLGTWSLGGLAISKEEALELLRAALEAGINLIDTAEVYGDGPSEELLGEALKKY----- 56
Query: 484 VKREDLYITSKLWNTFHRPDLVKPA-LQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDY 542
V R++++I +K+ PD ++K+++ ++L+ L DY
Sbjct: 57 VPRDEVFIATKVGPPGPPPDDGSRENIKKSIE------------------ESLKRLGTDY 98
Query: 543 LDLYLIHWPQAYKVSNDFPCAVTREMAFRLSPHIEGDTLFPADANGKTLYSDANYVDTWL 602
LDLYL+HWP D P + +T
Sbjct: 99 LDLYLLHWP---------------------------DPSLPIE-------------ETLE 118
Query: 603 EMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPY--LTQHKLKQWCEER 660
+E+L +G ++ IGVSNF+ +Q+++ L+ G + VV QVE L + L + C+E
Sbjct: 119 ALEELKKEGKIRHIGVSNFSVEQLREALEHGKVPIVVVQVEYSLLRRLAEEGLLELCQEN 178
Query: 661 QILITAYSPLGS------PDRPWAKPGDPSLLDDPKIKEIAAKYNKTSAQILIKY--QVQ 712
I I AYSPLG L +KE+A ++ + AQ+ +++
Sbjct: 179 GIGIIAYSPLGGGLLTGKYTSEADPAPGDRRLLLEVLKELAKEHGVSPAQLALRWALSRP 238
Query: 713 QGNICIPKSVTPSRIEENAQIFDFELAPEDIQTIDSFNR 751
IP + + ++EEN + EL+ E+I ID
Sbjct: 239 GVISVIPGASSIEQLEENLAALELELSEEEIAEIDELLA 277
Score = 186 bits (475), Expect = 1e-53
Identities = 79/291 (27%), Positives = 130/291 (44%), Gaps = 51/291 (17%)
Query: 9 EREVYEAVCHAIDLGYRHFDCAYYY---QNEGQIGEAIQDKISQGVITREDIFITTKLWI 65
+ E E + A++ G D A Y +E +GEA++ + R+++FI TK+
Sbjct: 16 KEEALELLRAALEAGINLIDTAEVYGDGPSEELLGEALKKYVP-----RDEVFIATKVGP 70
Query: 66 T----FYSSPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDS 121
S + I+K ++ESL L DY++LYL+HWP D S
Sbjct: 71 PGPPPDDGSRENIKKSIEESLKRLGTDYLDLYLLHWP--------------------DPS 110
Query: 122 VDYVDVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVARIKPVTNQARYLFLIEVHPYL 181
+ + + +E L EG R IGVSNF+ +QL L ++ V Q Y L L
Sbjct: 111 LPIEETLEALEELKKEGKIRHIGVSNFSVEQLREALEHGKVPIVVVQVEYSLLRR----L 166
Query: 182 TQKKMAAFCRDNDLVITAYSPLS-------NPTNPFRAKVPFVLEDQTVKDIASRYDKTP 234
++ + C++N + I AYSPL + A L + +K++A + +P
Sbjct: 167 AEEGLLELCQENGIGIIAYSPLGGGLLTGKYTSEADPAPGDRRLLLEVLKELAKEHGVSP 226
Query: 235 AQI--------QLGNITVPKSVTKSRLEENRDIFDFELSQEDMDTLDGLDA 277
AQ+ +P + + +LEEN + ELS+E++ +D L A
Sbjct: 227 AQLALRWALSRPGVISVIPGASSIEQLEENLAALELELSEEEIAEIDELLA 277
>gnl|CDD|183012 PRK11172, dkgB, 2,5-diketo-D-gluconate reductase B; Provisional.
Length = 267
Score = 179 bits (455), Expect = 5e-51
Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 55/281 (19%)
Query: 12 VYEAVCHAIDLGYRHFDCAYYYQNEGQIGEAIQDKISQGVITREDIFITTKLWITFYSSP 71
V ++V A++LGYR D A Y NE +G+AI + GV R+++FITTK+WI +
Sbjct: 18 VIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAE---SGV-PRDELFITTKIWIDNLAKD 73
Query: 72 DLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWKTM 131
LI L+ESL L+ DYV+L L+HWP S D V V + M
Sbjct: 74 KLI-PSLKESLQKLRTDYVDLTLIHWP----SPNDEVS-----------------VEEFM 111
Query: 132 ECLVD---EGLARSIGVSNFN---TKQLETLLGVARIKPVTNQARYLFLIEVHPYLTQKK 185
+ L++ +GL R IG+SNF KQ +G I TNQ IE+ PYL +K
Sbjct: 112 QALLEAKKQGLTREIGISNFTIALMKQAIAAVGAENI--ATNQ------IELSPYLQNRK 163
Query: 186 MAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDIASRYDKTPAQI------QL 239
+ AF +++ + +T+Y L+ VL+D + IA++++ TPAQ+ QL
Sbjct: 164 VVAFAKEHGIHVTSYMTLA---------YGKVLKDPVIARIAAKHNATPAQVILAWAMQL 214
Query: 240 GNITVPKSVTKSRLEENRDIFDFELSQEDMDTLDGLDANGR 280
G +P S + L N D +L EDM + LD NGR
Sbjct: 215 GYSVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRNGR 255
Score = 175 bits (447), Expect = 6e-50
Identities = 100/331 (30%), Positives = 152/331 (45%), Gaps = 79/331 (23%)
Query: 427 LKFPIFGLGTWKSKKGEVKQAVGYAIDIGYRHIDCAHVYENEDEVGDAIAQKLKDNVVKR 486
+ P FGLGT++ K V +V A+++GYR ID A +Y+NE VG AIA ++ V R
Sbjct: 1 MSIPAFGLGTFRLKDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIA----ESGVPR 56
Query: 487 EDLYITSKLWNTFHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLDLY 546
++L+IT+K+W D + P+L+++LQ L+ DY+DL LIH
Sbjct: 57 DELFITTKIWIDNLAKDKLIPSLKESLQKLRTDYVDLTLIH------------------- 97
Query: 547 LIHWPQAYKVSNDFPCAVTREMAFRLSPHIEGDTLFPADANGKTLYSDANYVDTWLEMEK 606
WP SP+ + ++ ++ LE +K
Sbjct: 98 ---WP---------------------SPN-----------DEVSV---EEFMQALLEAKK 119
Query: 607 LVADGLVKSIGVSNFN---SKQIQDILDKGTIKPVVNQVECHPYLTQHKLKQWCEERQIL 663
GL + IG+SNF KQ + I NQ+E PYL K+ + +E I
Sbjct: 120 Q---GLTREIGISNFTIALMKQAIAAVGAENI--ATNQIELSPYLQNRKVVAFAKEHGIH 174
Query: 664 ITAYSPLGSPDRPWAKPGDPSLLDDPKIKEIAAKYNKTSAQILIKYQVQQGNICIPKSVT 723
+T+Y L + K +L DP I IAAK+N T AQ+++ + +Q G IP S
Sbjct: 175 VTSYMTLA-----YGK-----VLKDPVIARIAAKHNATPAQVILAWAMQLGYSVIPSSTK 224
Query: 724 PSRIEENAQIFDFELAPEDIQTIDSFNRNHR 754
+ N D +L ED+ I + +RN R
Sbjct: 225 RENLASNLLAQDLQLDAEDMAAIAALDRNGR 255
>gnl|CDD|223739 COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion].
Length = 316
Score = 119 bits (301), Expect = 1e-29
Identities = 76/296 (25%), Positives = 124/296 (41%), Gaps = 71/296 (23%)
Query: 18 HAIDLGYRHFDCAYYY---QNEGQIGEAIQDKISQGVITREDIFITTKLWITFY------ 68
A+D G FD A Y ++E +GEA++++ R+ + I TK+
Sbjct: 41 AALDAGINFFDTADVYGDGRSEEILGEALKERGR-----RDKVVIATKVGYRPGDPGPNG 95
Query: 69 ---SSPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYV 125
S D IR+ ++ SL L DY++LY +H P D
Sbjct: 96 VFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRP--------------------DPETPIE 135
Query: 126 DVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVARIKPVTNQARY-LFLIEVHPYLTQK 184
+ + ++ LV EG R IGVSN++ +Q+ L VA + Q Y L + K
Sbjct: 136 ETLEALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPEYNLLERDAE-----K 189
Query: 185 KMAAFCRDNDLVITAYSPL----------SNPTNPFRAKVPFVLEDQT---------VKD 225
++ CR+ + + AYSPL P +++P + T +++
Sbjct: 190 ELLPLCREEGIGLLAYSPLASGLLTGKYLPGPEGSRASELPRFQRELTERGLAILRALEE 249
Query: 226 IASRYDKTPAQIQL------GNITVPK-SVTK-SRLEENRDIFDFELSQEDMDTLD 273
+A TPAQ+ L +T P +K +LEEN D +LS+E++ LD
Sbjct: 250 LAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALD 305
Score = 118 bits (299), Expect = 2e-29
Identities = 81/360 (22%), Positives = 141/360 (39%), Gaps = 98/360 (27%)
Query: 424 NNGLKFPIFGLGTW-------KSKKGEVKQAVGYAIDIGYRHIDCAHVY---ENEDEVGD 473
+GLK GLGT ++ E + + A+D G D A VY +E+ +G+
Sbjct: 8 RSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGE 67
Query: 474 AIAQKLKDNVVKREDLYITSKLWNTFHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYK 533
A+ ++ +R+ + I +K +RP P + L D++ +A +
Sbjct: 68 ALKER-----GRRDKVVIATK---VGYRPGDPGP---NGVFGLSRDHIR-------RAVE 109
Query: 534 A-LQNLKLDYLDLYLIHWPQAYKVSNDFPCAVTREMAFRLSPHIEGDTLFPADANGKTLY 592
A L+ L DY+DLY +H P D P +
Sbjct: 110 ASLKRLGTDYIDLYQLHRP---------------------------DPETPIE------- 135
Query: 593 SDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKPVVNQVECHPY--LTQ 650
+T +++LV +G ++ IGVSN++++QI + L Q E Y L +
Sbjct: 136 ------ETLEALDELVREGKIRYIGVSNYSAEQIAEALAVA-APIDSLQPE---YNLLER 185
Query: 651 ---HKLKQWCEERQILITAYSPLGS---PDRPWAKPGDPSLLDDP--------------- 689
+L C E I + AYSPL S + P + P
Sbjct: 186 DAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPGPEGSRASELPRFQRELTERGLAILR 245
Query: 690 KIKEIAAKYNKTSAQILIKYQVQQGNICIPKS--VTPSRIEENAQIFDFELAPEDIQTID 747
++E+A + T AQ+ + + + Q + P ++EEN D +L+ E++ +D
Sbjct: 246 ALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALD 305
>gnl|CDD|227322 COG4989, COG4989, Predicted oxidoreductase [General function
prediction only].
Length = 298
Score = 65.9 bits (161), Expect = 1e-11
Identities = 70/301 (23%), Positives = 108/301 (35%), Gaps = 78/301 (25%)
Query: 424 NNGLKFPIFGLGTWKSKKGEVKQA-----VGYAIDIGYRHIDCAHVYEN---EDEVGDAI 475
+GL+F LG W+ + + A+++G D A +Y E G+A+
Sbjct: 8 PDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEAL 67
Query: 476 AQKLKDNVVKREDLYITSKLWNTFHRPDLVKPALQKTLQNLKLDYLDL---YLIHWPQAY 532
KL + RE + I SK + P+ ++ ++ + D ++I
Sbjct: 68 --KLAPGL--REKIEIVSKC-------GIRLPSREEP----RIGHYDTSKEHIIK--SVE 110
Query: 533 KALQNLKLDYLDLYLIHWPQAYKVSNDFPCAVTREMAFRLSPHIEGDTLFPADANGKTLY 592
++L NLK DYLDL LIH P D L A+ +
Sbjct: 111 QSLINLKTDYLDLLLIHRP---------------------------DPLMDAEEVAEAF- 142
Query: 593 SDANYVDTWLEMEKLVADGLVKSIGVSNFNSKQIQDILDKGTIKP-VVNQVECHPY---- 647
L G V+ GVSNFN Q ++L V NQ+E P
Sbjct: 143 ------------THLHKSGKVRHFGVSNFNPAQF-ELLQSRLPFTLVTNQLELSPLHTPM 189
Query: 648 LTQHKLKQWCEERQILITAYSPLGSPDRPWAKPGDPSLLDDPKIKEIAAKYNKTS-AQIL 706
L L C++ ++ A+SPLG L + IA +Y S +
Sbjct: 190 LLDGTLDY-CQQLRVRPMAWSPLGGGGLFLGDDKFQRLRK--VLDRIAEEYGAVSITAVA 246
Query: 707 I 707
I
Sbjct: 247 I 247
Score = 58.5 bits (142), Expect = 4e-09
Identities = 63/211 (29%), Positives = 90/211 (42%), Gaps = 47/211 (22%)
Query: 10 REVYEAVCHAIDLGYRHFDCA-YY--YQNEGQIGEAIQDKISQGVITREDIFITTKLWI- 65
RE+ + A++LG FD A Y YQ E GEA+ K++ G+ RE I I +K I
Sbjct: 31 RELLSFIETALELGITTFDHADIYGGYQCEALFGEAL--KLAPGL--REKIEIVSKCGIR 86
Query: 66 ---------TFY-SSPDLIRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGK 115
Y +S + I K +++SL L+ DY++L L+H P
Sbjct: 87 LPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRP----------------- 129
Query: 116 FDFDDSVDYVDVWKTMECLVDEGLARSIGVSNFNTKQLETLLGVARIKPVTNQARYLFLI 175
D +D +V + L G R GVSNFN Q E L VTNQ +
Sbjct: 130 ---DPLMDAEEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQ------L 180
Query: 176 EVHPYLT---QKKMAAFCRDNDLVITAYSPL 203
E+ P T +C+ + A+SPL
Sbjct: 181 ELSPLHTPMLLDGTLDYCQQLRVRPMAWSPL 211
>gnl|CDD|224370 COG1453, COG1453, Predicted oxidoreductases of the aldo/keto
reductase family [General function prediction only].
Length = 391
Score = 66.2 bits (162), Expect = 2e-11
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 425 NGLKFPIFGLG------TWKSKKGE--VKQAVGYAIDIGYRHIDCA---HVYENEDEVGD 473
G + I G G + E + + YAI+ G +ID A H E+E+ +G
Sbjct: 9 TGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGK 68
Query: 474 AIAQKLKDNVVKREDLYITSKL--WNTFHRPDLVKPALQKTLQNLKLDYLDLYLIH 527
A+ RE + + +KL W R D+ + + L+ L DY+D YLIH
Sbjct: 69 ALKDGY------REKVKLATKLPSWPVKDREDMER-IFNEQLEKLGTDYIDYYLIH 117
Score = 60.8 bits (148), Expect = 1e-09
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 26/136 (19%)
Query: 9 EREVYEAVCHAIDLGYRHFDCAYYY---QNEGQIGEAIQDKISQGVITREDIFITTKLWI 65
E E + +AI+ G + D A+ Y ++E +G+A++D RE + + TKL
Sbjct: 33 EENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG------YREKVKLATKLPS 86
Query: 66 TFYSSPDLIRKCLQESLDLLQMDYVNLYLMH------WPHAFRSGGDLVPF----KADGK 115
+ + + E L+ L DY++ YL+H W R G + F KA+GK
Sbjct: 87 WPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLG--VFDFLEKAKAEGK 144
Query: 116 -----FDFDDSVDYVD 126
F F S +
Sbjct: 145 IRNAGFSFHGSTEVFK 160
>gnl|CDD|236676 PRK10376, PRK10376, putative oxidoreductase; Provisional.
Length = 290
Score = 55.4 bits (134), Expect = 4e-08
Identities = 72/300 (24%), Positives = 111/300 (37%), Gaps = 101/300 (33%)
Query: 19 AIDLGYRHFDCAYYY----QNEGQIGEAIQDKISQGVITREDIFITTKL---------WI 65
A+ LG H D + +Y N+ I EA+ +D+ I TK+ W+
Sbjct: 49 AVALGVNHIDTSDFYGPHVTNQ-LIREALHP-------YPDDLTIVTKVGARRGEDGSWL 100
Query: 66 TFYSSPDLIRKCLQESLDLLQ---MDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSV 122
SP +R+ + ++L L +D VNL LM H P A+G +
Sbjct: 101 P-AFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHG--------P--AEGSIE----- 144
Query: 123 DYVDVWKTMECLVD---EGLARSIGVSNFNTKQLETLLGVARIKPVTNQARYLFLIEVHP 179
+ + L + +GL R IG+SN Q+ +A I V N H
Sbjct: 145 ------EPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIAEIVCVQNHYNL-----AH- 192
Query: 180 YLTQKKMAAFCRDNDLVI-------TAYSPLSNPTNPFRAKVPFV-------LEDQTVKD 225
R +D +I AY VPF L+ T+ D
Sbjct: 193 -----------RADDALIDALARDGIAY-------------VPFFPLGGFTPLQSSTLSD 228
Query: 226 IASRYDKTPAQIQLG-------NITV-PKSVTKSRLEENRDIFDFELSQEDMDTLDGLDA 277
+A+ TP Q+ L NI + P + + + L EN + LS+E + LDG+
Sbjct: 229 VAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288
Score = 31.9 bits (73), Expect = 1.0
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 451 AIDIGYRHIDCAHVYENEDEVGDAIAQKLKDNVVK--REDLYITSKL---------WNTF 499
A+ +G HID + Y G + +L + +DL I +K+ W
Sbjct: 49 AVALGVNHIDTSDFY------GPHVTNQLIREALHPYPDDLTIVTKVGARRGEDGSWLPA 102
Query: 500 HRPDLVKPALQKTLQNLKLDYLDL 523
P ++ A+ L+NL LD LD+
Sbjct: 103 FSPAELRRAVHDNLRNLGLDVLDV 126
>gnl|CDD|236727 PRK10625, tas, putative aldo-keto reductase; Provisional.
Length = 346
Score = 53.3 bits (128), Expect = 2e-07
Identities = 69/253 (27%), Positives = 99/253 (39%), Gaps = 75/253 (29%)
Query: 74 IRKCLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGK--FDFDDSVDYVDVWKTM 131
IR+ L +SL LQ DY++LY +HWP P GK + + DS V + +T+
Sbjct: 110 IREALHDSLKRLQTDYLDLYQVHWPQR--------PTNCFGKLGYSWTDSAPAVSLLETL 161
Query: 132 ECL---VDEGLARSIGVSNFNTKQLETLLGVARIKPVTNQARYLFLIEVH---------- 178
+ L G R IGVSN ET GV RYL L E H
Sbjct: 162 DALAEQQRAGKIRYIGVSN------ETAFGV---------MRYLHLAEKHDLPRIVTIQN 206
Query: 179 PYLTQKK-----MAAFCRDNDLVITAYSPLS---------NPTNPFRAKVPFVLE----- 219
PY + +A + + + AYS L+ N P A+
Sbjct: 207 PYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYS 266
Query: 220 -DQTVK------DIASRYDKTPAQIQLGNI--------TVPKSVTKSRLEENRDIFDFEL 264
+QT K DIA R+ PAQ+ L + T+ + T +L+ N + L
Sbjct: 267 GEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLKTNIESLHLTL 326
Query: 265 SQEDMDTLDGLDA 277
S+E L ++A
Sbjct: 327 SEE---VLAEIEA 336
Score = 46.0 bits (109), Expect = 4e-05
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 31/130 (23%)
Query: 427 LKFPIFGLGTW----KSKKGEVKQAVGYAIDIGYRHIDCAHVYE----------NEDEVG 472
L+ GLGT ++ + + + YA+ G ID A +Y E +G
Sbjct: 11 LEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIG 70
Query: 473 DAIAQKLKDNVVKREDLYITSKLWNTFH------RPDL------VKPALQKTLQNLKLDY 520
+ +A++ RE L I SK+ RP+ ++ AL +L+ L+ DY
Sbjct: 71 NWLAKR-----GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDY 125
Query: 521 LDLYLIHWPQ 530
LDLY +HWPQ
Sbjct: 126 LDLYQVHWPQ 135
>gnl|CDD|213602 TIGR01293, Kv_beta, voltage-dependent potassium channel beta
subunit, animal. This model describes the conserved
core region of the beta subunit of voltage-gated
potassium (Kv) channels in animals. Amino-terminal
regions differ substantially, in part by alternative
splicing, and are not included in the model. Four beta
subunits form a complex with four alpha subunit
cytoplasmic (T1) regions, and the structure of the
complex is solved. The beta subunit belongs to a family
of NAD(P)H-dependent aldo-keto reductases, binds NADPH,
and couples voltage-gated channel activity to the redox
potential of the cell. Plant beta subunits and their
closely related bacterial homologs (in Deinococcus
radiudurans, Xylella fastidiosa, etc.) appear more
closely related to each other than to animal forms.
However, the bacterial species lack convincing
counterparts the Kv alpha subunit and the Kv beta
homolog may serve as an enzyme. Cutoffs are set for this
model such that yeast and plant forms and bacterial
close homologs score between trusted and noise cutoffs.
Length = 317
Score = 42.2 bits (99), Expect = 8e-04
Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 37/169 (21%)
Query: 19 AIDLGYRHFDCAYYY---QNEGQIGEAIQDKISQGVITREDIFITTKLWITFYSSPD--L 73
A + G FD A Y + E +G ++ K + R ITTK++ + + L
Sbjct: 38 AYENGINLFDTAEVYAAGKAEVVLGNILKKKGWR----RSSYVITTKIFWGGKAETERGL 93
Query: 74 IRK----CLQESLDLLQMDYVNLYLMHWPHAFRSGGDLVPFKADGKFDFDDSVDYVDVWK 129
RK L+ SL+ LQ++YV++ + P D + + +
Sbjct: 94 SRKHIIEGLKASLERLQLEYVDIVFANRP--------------------DPNTPMEETVR 133
Query: 130 TMECLVDEGLARSIGVSNFNTKQLETLLGVAR----IKPVTNQARYLFL 174
M ++++G+A G S +++ ++ VAR I P+ QA Y
Sbjct: 134 AMTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMF 182
Score = 39.9 bits (93), Expect = 0.004
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 21/121 (17%)
Query: 425 NGLKFPIFGLGTWKSKKGEV-----KQAVGYAIDIGYRHIDCAHVY---ENEDEVGDAIA 476
+GL+ GLGTW + G++ +Q + A + G D A VY + E +G+ +
Sbjct: 7 SGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILK 66
Query: 477 QKLKDNVVKREDLYITSKL-WNT-------FHRPDLVKPALQKTLQNLKLDYLDLYLIHW 528
+K +R IT+K+ W R +++ L+ +L+ L+L+Y+D+ +
Sbjct: 67 KK----GWRRSSYVITTKIFWGGKAETERGLSRKHIIE-GLKASLERLQLEYVDIVFANR 121
Query: 529 P 529
P
Sbjct: 122 P 122
>gnl|CDD|178198 PLN02587, PLN02587, L-galactose dehydrogenase.
Length = 314
Score = 40.9 bits (96), Expect = 0.002
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 9 EREVYEAVCHAIDLGYRHFDCAYYYQN---EGQIGEAIQDKISQGVITREDIFITTKLWI 65
E + +V A LG FD + YY E +G+A++ I RE ++TK
Sbjct: 30 EEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALK----ALGIPREKYVVSTKCGR 85
Query: 66 ---TFYSSPDLIRKCLQESLDLLQMDYVNLYLMH 96
F S + + K + ESL LQ+DYV++ H
Sbjct: 86 YGEGFDFSAERVTKSVDESLARLQLDYVDILHCH 119
>gnl|CDD|129225 TIGR00119, acolac_sm, acetolactate synthase, small subunit.
Acetolactate synthase is a heterodimeric thiamine
pyrophosphate enzyme with large and small subunits. One
of the three isozymes in E. coli K12 contains a
frameshift in the large subunit gene and is not
expressed. acetohydroxyacid synthase is a synonym [Amino
acid biosynthesis, Pyruvate family].
Length = 157
Score = 32.7 bits (75), Expect = 0.34
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 25/113 (22%)
Query: 130 TMECLVDEGLARSIGVSNFNTKQLETLLGVARIKPVTNQA---RYLFLIEVHPYLTQKKM 186
T+ + D+ + I TKQL L+ V ++ +T A R L L++V
Sbjct: 46 TIVVVGDDKVLEQI------TKQLNKLVDVIKVSDLTESAIVERELCLVKVS-------A 92
Query: 187 AAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDIASRYDKTPAQIQL 239
RD I TN FR ++ V D ++ DK A ++L
Sbjct: 93 PGEGRDE---IIRL------TNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLEL 136
>gnl|CDD|182140 PRK09912, PRK09912, L-glyceraldehyde 3-phosphate reductase;
Provisional.
Length = 346
Score = 32.7 bits (74), Expect = 0.73
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 19 AIDLGYRHFDCAYYY-----QNEGQIGEAIQDKISQGVITREDIFITTK----LWITFY- 68
A DLG HFD A Y E G +++ + R+++ I+TK +W Y
Sbjct: 52 AFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAA---YRDELIISTKAGYDMWPGPYG 108
Query: 69 --SSPDLIRKCLQESLDLLQMDYVNLYLMH 96
S + L +SL + ++YV+++ H
Sbjct: 109 SGGSRKYLLASLDQSLKRMGLEYVDIFYSH 138
Score = 30.7 bits (69), Expect = 2.7
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 21/121 (17%)
Query: 425 NGLKFPIFGLGTWKS----KKGEVKQAV-GYAIDIGYRHIDCAHVY-----ENEDEVGDA 474
+GL+ P LG W + E ++A+ A D+G H D A+ Y E+ G
Sbjct: 21 SGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRL 80
Query: 475 IAQKLKDNVVKREDLYITSK----LW----NTFHRPDLVKPALQKTLQNLKLDYLDLYLI 526
+ + D R++L I++K +W + + +L ++L+ + L+Y+D++
Sbjct: 81 LRE---DFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYS 137
Query: 527 H 527
H
Sbjct: 138 H 138
>gnl|CDD|221152 pfam11635, Med16, Mediator complex subunit 16. Mediator is a large
complex of up to 33 proteins that is conserved from
plants through fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-activity part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Med16 is one of the
subunits of the Tail portion of the Mediator complex and
is required for lipopolysaccharide gene-expression.
Several members including a human protein have one or
more WD40 domains on them, pfam00400.
Length = 744
Score = 32.4 bits (74), Expect = 0.94
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 180 YLTQKKMAAFCRDNDLVITAYSPLSNPTNPFRAKVPFVLEDQTVKDIASRYDKTPA-QIQ 238
LT +A ++ITAYS +S +R +V + + + D K P+ ++
Sbjct: 104 LLTHAAIAPTNNGQCILITAYSSVSQKIQFYRVQVNWNAKPNQIDD-----QKPPSLFLR 158
Query: 239 LGNITVPKSVTKS 251
P
Sbjct: 159 HILGETPDDTDPE 171
>gnl|CDD|111230 pfam02316, HTH_Tnp_Mu_1, Mu DNA-binding domain. This family
consists of MuA-transposase and repressor protein CI.
These proteins contain homologous DNA-binding domains at
their N-termini which compete for the same DNA site
within the Mu bacteriophage genome.
Length = 136
Score = 30.3 bits (68), Expect = 1.8
Identities = 12/73 (16%), Positives = 22/73 (30%)
Query: 315 ATEYQVVLTPDEQTHYQVGPTGTAEKVCQVYMIPDEHTHYQVVLTTVTNSSQENQGSKRQ 374
A EY V P E + G E ++ + S + +++
Sbjct: 38 AYEYHVNSLPVETRAALLLRQGEIETGAGLFEKARPTLEAHTYDRELIWSKWDLAPDEQR 97
Query: 375 ARLQIQIPTQQNK 387
L+ +P Q
Sbjct: 98 RALEKLLPAVQAA 110
>gnl|CDD|218984 pfam06314, ADC, Acetoacetate decarboxylase (ADC). This family
consists of several acetoacetate decarboxylase (ADC)
proteins (EC:4.1.1.4).
Length = 240
Score = 31.2 bits (71), Expect = 1.9
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 63 LWITFYSSPDLIRKCLQESLDLLQMDYVNLYLMHWP 98
L I++ + PD + L E L+ V + P
Sbjct: 25 LTISYRTDPDALAALLPEPLEPADEPLVAVEFARMP 60
>gnl|CDD|233383 TIGR01373, soxB, sarcosine oxidase, beta subunit family,
heterotetrameric form. This model describes the beta
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason. Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 407
Score = 30.6 bits (69), Expect = 3.8
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 406 FQPMQATKMAINFPFVTFNNGLKFPIFGLGTWKSKKGEVKQ---AVGYA 451
P Q ++ P + F+ +FP+ G G + + G + A GYA
Sbjct: 146 LSPEQVRRVI---PILDFSPDARFPVVG-GLLQRRGGTARHDAVAWGYA 190
>gnl|CDD|213617 TIGR01417, PTS_I_fam, phosphoenolpyruvate-protein
phosphotransferase. This model recognizes a distinct
clade of phophoenolpyruvate (PEP)-dependent enzymes.
Most members are known or deduced to function as the
phosphoenolpyruvate-protein phosphotransferase (or
enzyme I) of PTS sugar transport systems. However, some
species with both a member of this family and a homolog
of the phosphocarrier protein HPr lack a IIC component
able to serve as a permease. An HPr homolog designated
NPr has been implicated in the regulation of nitrogen
assimilation, which demonstrates that not all
phosphotransferase system components are associated
directly with PTS transport.
Length = 565
Score = 30.5 bits (69), Expect = 4.0
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 686 LDDPKIKEIAAKYNKTSAQILIKYQVQQGNICIPKSVTPSRIEENAQIFDFELAPEDIQT 745
+DD +KE AA +++ G++ K S I++ + +L P +
Sbjct: 117 MDDEYLKERAADIRDIGNRLI-------GHLLGVKISDLSEIQDEVILVAEDLTPSETAQ 169
Query: 746 ID 747
++
Sbjct: 170 LN 171
>gnl|CDD|217301 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals and numerous prevalence
studies have raised questions about its role in
unexplained hepatitis. ORF1 is a large 750 residue
protein. The N-terminal half of this protein corresponds
to the capsid protein.
Length = 525
Score = 29.2 bits (66), Expect = 9.7
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 485 KREDLYITSKLWNTFHRPDLVKPALQKTLQNLKLDYLDLYLIHWPQAYKALQNLKLDYLD 544
LY T +NTF P +KP + + D +W Y L+Y
Sbjct: 283 LLITLYKTVTYYNTFETPAQLKPKTKNKNKTTNKTPNDSTSKYWDSPYGDNTYNSLEYHT 342
Query: 545 -LYLIHWPQAYKVSNDFPCAVT 565
+ + A + + FP A T
Sbjct: 343 GWFSPIFLSAGRSNPQFPGAYT 364
>gnl|CDD|200366 TIGR04115, rSAM_Cxxx_rpt, radical SAM peptide maturase, CXXX-repeat
target family. Members of this radical SAM domain
protein are predicted peptide maturases, similar to
PqqE, AlbA, the mycofactocin radical SAM maturase, and
many others that share the peptide modification radical
SAM protein C-terminal additional 4Fe4S-binding domain
(TIGR04085). Members co-occur with a protein of unknown
function that may be a chaperone or immunity protein and
with a peptide that may have twelve or more cysteines
occurring regularly spaced every fourth residue. These
Cys residues tend to be flanked by residues with small
side chains that provide minimal steric hindrance to
crosslink formation by the radical SAM enzyme as in the
subtilosin A system.
Length = 359
Score = 29.1 bits (65), Expect = 10.0
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 444 VKQAVGYAIDIGYRHIDCAHVYENEDEVGDAIA-----QKLKDNVVKREDLY 490
VK++V + ID+GY ++ VYE ++GD +KL D +++ D+Y
Sbjct: 176 VKESVTHLIDLGYNEVNINCVYEEGWQMGDDTVFEDQLKKLADYILE-HDMY 226
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.415
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 39,610,246
Number of extensions: 3901394
Number of successful extensions: 3495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3418
Number of HSP's successfully gapped: 49
Length of query: 773
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 669
Effective length of database: 6,324,786
Effective search space: 4231281834
Effective search space used: 4231281834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.2 bits)