RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15066
(62 letters)
>gnl|CDD|223729 COG0656, ARA1, Aldo/keto reductases, related to diketogulonate
reductase [General function prediction only].
Length = 280
Score = 63.4 bits (155), Expect = 4e-14
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRS 56
LR +Q G I IPKS T +RI EN+ FDF L + D+ IDALD+
Sbjct: 219 ALRWHIQRGVIVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268
>gnl|CDD|183203 PRK11565, dkgA, 2,5-diketo-D-gluconate reductase A; Provisional.
Length = 275
Score = 57.4 bits (139), Expect = 7e-12
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQR 55
++R + SG + IPKS T RI EN +VFDF L++ ++ +I LD+ +R
Sbjct: 217 VIRWHLDSGLVVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGKR 265
>gnl|CDD|119408 cd06660, Aldo_ket_red, Aldo-keto reductases (AKRs) are a
superfamily of soluble NAD(P)(H) oxidoreductases whose
chief purpose is to reduce aldehydes and ketones to
primary and secondary alcohols. AKRs are present in all
phyla and are of importance to both health and
industrial applications. Members have very distinct
functions and include the prokaryotic
2,5-diketo-D-gluconic acid reductases and beta-keto
ester reductases, the eukaryotic aldose reductases,
aldehyde reductases, hydroxysteroid dehydrogenases,
steroid 5beta-reductases, potassium channel
beta-subunits and aflatoxin aldehyde reductases, among
others.
Length = 285
Score = 50.6 bits (122), Expect = 2e-09
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 15 GTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDAL 50
T IP +++ +R+ EN+ DF L D+ +DAL
Sbjct: 250 VTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285
>gnl|CDD|215817 pfam00248, Aldo_ket_red, Aldo/keto reductase family. This family
includes a number of K+ ion channel beta chain
regulatory domains - these are reported to have
oxidoreductase activity.
Length = 277
Score = 46.2 bits (110), Expect = 7e-08
Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 5 SFILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDK 52
+ L IP +++++++ EN+ + L + ++ +ID L
Sbjct: 232 RWAL--SRPGVISVIPGASSIEQLEENLAALELELSEEEIAEIDELLA 277
>gnl|CDD|223739 COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion].
Length = 316
Score = 32.7 bits (75), Expect = 0.005
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 6 FIL-RPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDA 49
++L +P V T PI ++ +++ EN+ D L + ++ +D
Sbjct: 265 WVLAQPGV---TSPIVGASKAEQLEENLAALDIKLSEEELAALDE 306
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents
the N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 25.6 bits (57), Expect = 1.1
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 26 KRITENINVFDFTLEQ-----SDVDKIDALDKKQRSC 57
K I EN L + DVD++ LD+++R
Sbjct: 5 KLIRENPEAVKEKLRKRGVDVLDVDELLELDEERREL 41
>gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed.
Length = 763
Score = 25.6 bits (57), Expect = 1.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 31 NINVFDFTLEQSDVDKI 47
I+VFD L++SD DK+
Sbjct: 109 GIDVFDIELDESDPDKL 125
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 25.0 bits (56), Expect = 2.6
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 25 VKRITENINVFDFTL----EQSDVDKIDALDKKQRS 56
+K I EN L DVD++ LD+++R
Sbjct: 4 IKLIRENPEAVKEALAKRGFPLDVDELLELDEERRE 39
>gnl|CDD|213852 TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family.
Members of this protein family are designated
polyphosphate kinase 2 (PPK2) after the characterized
protein in Pseudomonas aeruginosa. This family
comprises one of three well-separated clades in the
larger family described by pfam03976. PA0141 from this
family has been shown capable of operating in reverse,
with GDP preferred (over ADP) as a substrate, producing
GTP (or ATP) by transfer of a phosphate residue from
polyphosphate. Most species with a member of this
family also encode a polyphosphate kinase 1 (PPK1)
[Central intermediary metabolism, Phosphorus
compounds].
Length = 230
Score = 24.1 bits (53), Expect = 4.7
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 21 KSNTVKRITENIN 33
K T+KRITE++N
Sbjct: 44 KGGTIKRITEHLN 56
>gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme
oxidoreductase/phosphotransacetylase; Reviewed.
Length = 752
Score = 23.9 bits (53), Expect = 6.4
Identities = 9/19 (47%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 32 INVFDFTLEQSDVDK-IDA 49
I+VFD +++ D DK I+A
Sbjct: 102 IDVFDIEVDEEDPDKFIEA 120
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.380
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,005,670
Number of extensions: 202886
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 13
Length of query: 62
Length of database: 10,937,602
Length adjustment: 33
Effective length of query: 29
Effective length of database: 9,473,920
Effective search space: 274743680
Effective search space used: 274743680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)