RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15066
(62 letters)
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961;
structural genomics, PSI, protein structure initiative;
1.60A {Caenorhabditis elegans} SCOP: c.1.7.1
Length = 317
Score = 79.5 bits (197), Expect = 4e-20
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSCVMA 60
+LR + G +PKS RI EN VFDF+L + D+ K++ QR +
Sbjct: 249 LLRYALDRGCAILPKSIQENRIKENFEVFDFSLTEEDIAKLEESKNSQRLFLQD 302
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like
protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A
{Rattus norvegicus} PDB: 3qkz_A*
Length = 316
Score = 78.3 bits (194), Expect = 1e-19
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSCVMA 60
++R VQ IPKS T+ I ENI VFDF L + D+ I +L++ R+C +
Sbjct: 249 LIRFHVQRNVAVIPKSVTLSHIKENIQVFDFQLSEEDMAAILSLNRNWRACGLF 302
>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: CIT; 1.60A {Leishmania major}
Length = 288
Score = 77.6 bits (192), Expect = 1e-19
Identities = 24/51 (47%), Positives = 29/51 (56%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSC 57
ILR +Q I IPKS +RI EN ++FDF L DV IDAL+ R
Sbjct: 230 ILRWNIQKNLITIPKSVHRERIEENADIFDFELGAEDVMSIDALNTNSRYG 280
>1s1p_A Aldo-keto reductase family 1 member C3; TIM-barrel, oxidoreductase;
HET: NAP; 1.20A {Homo sapiens} SCOP: c.1.7.1 PDB:
1s1r_A* 1s2a_A* 1s2c_A* 3uwe_A* 3r58_A* 3r43_A* 3r7m_A*
3r6i_A* 3r8h_A* 3r94_A* 3r8g_A* 1zq5_A* 1ry8_A* 1xf0_A*
1ry0_A* 2f38_A* 2fgb_A* 4dbs_A* 4dbu_A* 3gug_A* ...
Length = 331
Score = 78.4 bits (194), Expect = 1e-19
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSCVMAPY 62
LR Q+Q G + + KS +RI +N+ VF+F L D+ ID LD+ +
Sbjct: 256 ALRYQLQRGVVVLAKSYNEQRIRQNVQVFEFQLTAEDMKAIDGLDRNLHYFNSDSF 311
>1mi3_A Xylose reductase, XR; aldo-keto reductase, beta-alpha barrel,
dimer, oxidoreductase; HET: NAD; 1.80A {Candida tenuis}
SCOP: c.1.7.1 PDB: 1jez_A* 1k8c_A* 1ye6_A* 1ye4_A*
1sm9_A* 1r38_A* 1z9a_A*
Length = 322
Score = 78.0 bits (193), Expect = 1e-19
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSCVMAPY 62
+LR Q G IPKSN +R+ +N + F L + D ++I LD R +
Sbjct: 260 LLRWAAQRGIAVIPKSNLPERLVQNRSFNTFDLTKEDFEEIAKLDIGLRFNDPWDW 315
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT;
0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A*
1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A*
2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A*
2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...
Length = 316
Score = 78.0 bits (193), Expect = 1e-19
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSC 57
++R +Q + IPKS T +RI EN VFDF L D+ + + ++ R C
Sbjct: 249 LIRFPMQRNLVVIPKSVTPERIAENFKVFDFELSSQDMTTLLSYNRNWRVC 299
>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics,
joint center for structural genomics, PSI, protein
structure initiative; HET: NAP; 2.40A {Thermotoga
maritima} SCOP: c.1.7.1
Length = 298
Score = 77.6 bits (192), Expect = 1e-19
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSCVMAP 61
ILR Q G + IPK+ +R+ ENI++FDF L Q D++KI LD+ Q +
Sbjct: 231 ILRWLTQKGIVAIPKTVRRERMKENISIFDFELTQEDMEKIATLDEGQSAFFSHR 285
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: NAP;
1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Length = 290
Score = 77.6 bits (192), Expect = 2e-19
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSC 57
++R +Q G + IPKS RI EN NV+DF L + ++ +ID L++ +R
Sbjct: 228 VIRWDIQHGIVTIPKSTNKGRIQENFNVWDFKLTEEEMRQIDELNEDKRIG 278
>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic
tetrad, hepes, NADP, bIle catabolism, disease mutation,
lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens}
PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A*
3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A*
Length = 326
Score = 78.0 bits (193), Expect = 2e-19
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSCVMAPY 62
+LR +Q G + IPKS ++RI EN +FDF+L + ++ I+AL+K R + +
Sbjct: 259 VLRFNIQRGVVVIPKSFNLERIKENFQIFDFSLTEEEMKDIEALNKNVRFVELLMW 314
>2ao0_A Aldehyde dehydrogenase; TIM barrel, aldo-keto reductase, ternary
complex; HET: NAP FID; 1.85A {Sus scrofa} PDB: 3h4g_A*
3cv7_A* 3fx4_A* 1hqt_A* 1ae4_A* 1cwn_A* 2alr_A
Length = 324
Score = 77.6 bits (192), Expect = 2e-19
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSCVMA 60
+LR QVQ I IPKS T RI +NI VFDFT ++ ++DAL+K R V
Sbjct: 248 LLRWQVQRKVICIPKSVTPSRILQNIQVFDFTFSPEEMKQLDALNKNLRFIVPM 301
>1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase,
NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP:
c.1.7.1 PDB: 1lwi_A*
Length = 323
Score = 77.6 bits (192), Expect = 2e-19
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSCVMAPY 62
LR Q+Q G +P+ +S KRI E VF+F L D+ +D L++ R +
Sbjct: 256 ALRYQLQRGVVPLIRSFNAKRIKELTQVFEFQLASEDMKALDGLNRNFRYNNAKYF 311
>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT;
2.10A {Trypanosoma brucei}
Length = 281
Score = 76.8 bits (190), Expect = 2e-19
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSC 57
+LR ++Q+G I IPKS RI EN N+FDF L D+ ID ++ R
Sbjct: 221 MLRWEIQAGVITIPKSGNEARIKENGNIFDFELTAEDIQVIDGMNAGHRYG 271
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel,
aldo-ketoreductase, NADPH dependant, BACT targets at
IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP:
c.1.7.1
Length = 296
Score = 76.5 bits (189), Expect = 4e-19
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQR 55
++R + SG + IPKS T RI EN +V+DF L++ ++ +I LD+ +R
Sbjct: 238 VIRWHLDSGLVVIPKSVTPSRIAENFDVWDFRLDKDELGEIAKLDQGKR 286
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus
subtilis} PDB: 3b3d_A
Length = 310
Score = 76.9 bits (190), Expect = 4e-19
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSC 57
ILR +Q G + IPKS RI EN ++FDF L Q D+DKIDAL+K +R
Sbjct: 252 ILRWDLQHGVVTIPKSIKEHRIIENADIFDFELSQEDMDKIDALNKDERVG 302
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium
smegmatis} PDB: 2wzt_A
Length = 283
Score = 76.4 bits (189), Expect = 4e-19
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQR 55
+LR +Q G + I +S +RI N++VF F L +++ ++ LD R
Sbjct: 224 LLRWSIQLGNVVISRSANPERIASNLDVFGFELTADEMETLNGLDDGTR 272
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus
subtilis} PDB: 3d3f_A*
Length = 276
Score = 76.0 bits (188), Expect = 4e-19
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSC 57
ILR +Q G + IPKS RI EN ++FDF L Q D+DKIDAL+K +R
Sbjct: 218 ILRWDLQHGVVTIPKSIKEHRIIENADIFDFELSQEDMDKIDALNKDERVG 268
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase;
HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Length = 344
Score = 76.1 bits (188), Expect = 7e-19
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSC 57
+++ +Q GT IPKS+ +RI ENI VF + + + D + ++ ++R
Sbjct: 269 LIKWALQRGTSVIPKSSKDERIKENIQVFGWEIPEEDFKVLCSIKDEKRVL 319
>1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid,
biosynthesis, plant protein; HET: NAP; 1.70A {Medicago
sativa}
Length = 312
Score = 75.3 bits (186), Expect = 2e-18
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSC 57
LR + G +PKS +R+ +N+ +FD++L + D +KI + + +
Sbjct: 249 SLRWLYEQGVTFVPKSYDKERMNQNLRIFDWSLTKEDHEKIAQIKQNRLIP 299
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM
barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP:
c.1.7.1 PDB: 1a80_A* 1m9h_A*
Length = 278
Score = 74.5 bits (184), Expect = 2e-18
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSCVMAP 61
+LR +Q G + PKS +R+ EN++VFDF L +++ IDA+D S ++
Sbjct: 218 VLRWHLQKGFVVFPKSVRRERLEENLDVFDFDLTDTEIAAIDAMDPGDGSGRVSA 272
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography;
1.80A {Brucella melitensis biovar}
Length = 283
Score = 73.7 bits (182), Expect = 4e-18
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALD 51
ILR +++G I IPKS T RI EN ++FDFTL +D D I LD
Sbjct: 239 ILRWHIETGNIVIPKSITPARIKENFDIFDFTLNGTDHDAITKLD 283
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance,
oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Length = 331
Score = 71.8 bits (177), Expect = 3e-17
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQR 55
LR +Q+G +PKS++ R+ EN++VFD+++ + K + +++
Sbjct: 258 ALRWGLQTGHSVLPKSSSGARLKENLDVFDWSIPEDLFTKFSNIPQEKF 306
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance,
oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Length = 335
Score = 71.5 bits (176), Expect = 4e-17
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQR 55
LR +Q G +PKS RI EN NVFD+++ K +++ +
Sbjct: 262 ALRWGLQMGHSVLPKSTNEGRIKENFNVFDWSIPDYMFAKFAEIEQARL 310
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A
{Mus musculus}
Length = 324
Score = 71.1 bits (174), Expect = 5e-17
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 7 ILRPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSC 57
LR +Q G +P+ +S + EN+ VF F L D+ +D L+ R
Sbjct: 257 ALRYLIQRGIVPLAQSFXENEMRENLQVFGFQLSPEDMXTLDGLNXNFRYL 307
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc,
PSI-biology, structural genomics; 1.96A {Sinorhizobium
meliloti}
Length = 298
Score = 69.5 bits (171), Expect = 2e-16
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 7 ILRPQV-QSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSCV----MAP 61
LR V Q I + K+ T R+ EN +FDF L + ++ + L + V +AP
Sbjct: 235 ALRWLVQQQDVIVLSKTATEARLKENFAIFDFALTREEMAAVRELARPNGRIVNPQGLAP 294
>3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university
of washingto niaid, oxidoreductase, S genomics; HET:
NAP; 1.75A {Giardia lamblia}
Length = 334
Score = 66.5 bits (163), Expect = 3e-15
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 7 ILRPQVQSGTIP----IPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSCVMAP 61
L V+ IPKS T RI N + L D+D I+ + +R P
Sbjct: 266 ALAWHVKKWNTSMYSVIPKSQTPARIEANFKCTEVQLSDDDMDAINNIHLNKRIRFCDP 324
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR,
AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans}
Length = 348
Score = 37.2 bits (87), Expect = 8e-05
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 13 QSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDAL 50
Q I + + +++ +VF ++L + +D +
Sbjct: 291 QGPVIALWGARKPGQVSGVKDVFGWSLTDEEKKAVDDI 328
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto
reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A
{Bacillus subtilis} SCOP: c.1.7.1
Length = 333
Score = 34.8 bits (81), Expect = 6e-04
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 9 RPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDAL 50
+P I + + ++ + +TL D I+ +
Sbjct: 271 QPGA---DIALWGARKPGQLEALSEITGWTLNSEDQKDINTI 309
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel,
oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1
PDB: 1pz0_A*
Length = 312
Score = 33.6 bits (78), Expect = 0.001
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 16 TIPIPKSNTVKRITENINVFDFTLEQSDVDKIDAL 50
I IP + ++ +NI D TL Q D+ ID L
Sbjct: 274 DILIPGAKRADQLIDNIKTADVTLSQEDISFIDKL 308
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L
MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A
3v0t_A* 3uyi_A*
Length = 337
Score = 30.3 bits (68), Expect = 0.021
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 17 IPIPKSNTVKRITENINVFDFTLEQSDVDKIDAL 50
+PIP + +K + N+ L + D+ +I
Sbjct: 275 VPIPGTTKIKNLHNNVGALKVXLTKEDLKEISDA 308
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto
reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB:
1og6_A*
Length = 319
Score = 29.1 bits (66), Expect = 0.059
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 14 SGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDA 49
S +PI S ++R+ + + + +I
Sbjct: 276 SQPLPIIGSGKIERVRAAVEAETLKMTRQQWFRIRK 311
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 25.6 bits (57), Expect = 1.1
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 9 RPQVQSGTIPIPKSNTVKRITENINV-FD 36
RP V + T++R+ I+V +D
Sbjct: 492 RPYVDQVELACACGGTMRRVPYVIDVWYD 520
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F,
structural GE oxidoreductase; HET: NDP; 1.60A
{Escherichia coli} SCOP: c.1.7.1
Length = 346
Score = 25.2 bits (56), Expect = 1.3
Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 9 RPQVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQR 55
+P V + + T+ ++ NI L + + +I+A+ +
Sbjct: 299 QPFV---ASTLLGATTMDQLKTNIESLHLELSEDVLAEIEAVHQVYT 342
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 24.4 bits (54), Expect = 2.7
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 25 VKRITENINVFDFTL----EQSDVDKIDALDKKQRS 56
+KR+ + VF + D++ + ALD++ +
Sbjct: 4 LKRLRQEPEVFHRAIREKGVALDLEALLALDREVQE 39
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD,
structural genomics, NPPSFA; HET: NAD MES; 1.60A
{Pyrococcus horikoshii} PDB: 1ww8_A*
Length = 439
Score = 24.1 bits (53), Expect = 3.1
Identities = 2/17 (11%), Positives = 9/17 (52%)
Query: 31 NINVFDFTLEQSDVDKI 47
++ F +++ + +K
Sbjct: 102 GVDAFPIMIKEQEPNKF 118
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 24.2 bits (53), Expect = 3.6
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 11 QVQSGTIPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSCVMA 60
+ + G + + + + N +VFD+ I + ++K + VMA
Sbjct: 45 EKELGLKQVTQD-AIDEMKSNRDVFDW-------PFIRSEERKLKHDVMA 86
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 24.2 bits (53), Expect = 3.7
Identities = 4/39 (10%), Positives = 11/39 (28%), Gaps = 7/39 (17%)
Query: 25 VKRITENINVFD-------FTLEQSDVDKIDALDKKQRS 56
++ + L D+ I + ++ R
Sbjct: 43 MESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQ 81
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics,
PSI-2, protein structure initiative; 2.30A {Haemophilus
influenzae} SCOP: c.66.1.46
Length = 201
Score = 23.7 bits (52), Expect = 4.0
Identities = 6/40 (15%), Positives = 17/40 (42%)
Query: 23 NTVKRITENINVFDFTLEQSDVDKIDALDKKQRSCVMAPY 62
++ +N+ + EQ++V +LD ++ +
Sbjct: 87 TVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHF 126
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 23.8 bits (52), Expect = 4.1
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 17 IPIPKSNTVKRITENINVFDFTLEQSDVDKIDALDKKQRSCVMA 60
+PI ++ + N+ DF +K+ R VMA
Sbjct: 77 LPITDE-QIREMKSNLENIDF-------KMAAEEEKRLRHDVMA 112
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural
genomics, NPPSFA, nationa on protein structural and
functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 23.6 bits (52), Expect = 4.4
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 25 VKRITENINVFDFTLEQ------SDVDKIDALDKKQRS 56
+ I E + L S VDK+ LDK++R
Sbjct: 4 INLIREKPDYVKERLATRDKELVSLVDKVLELDKRRRE 41
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme,
structural genomics, JCS protein structure initiative,
PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3
PDB: 2hae_A*
Length = 388
Score = 23.6 bits (52), Expect = 5.7
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 31 NINVFDFTLEQSDVDKI 47
+I+ F L +S+ +KI
Sbjct: 108 DIDAFPICLSESEEEKI 124
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 23.3 bits (51), Expect = 7.2
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 31 NINVFDFTLEQSDVDKI 47
++ L+ D ++I
Sbjct: 104 GVDAIPIVLDTKDTEEI 120
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.380
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 866,669
Number of extensions: 35877
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 42
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)