BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15067
(80 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 38/46 (82%)
Query: 15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
+E+G CK+G C+FAHG HELR + RHP+Y+T+LC+++H GFCPY
Sbjct: 141 EESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 186
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 37/46 (80%)
Query: 15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
+E G CK+G C+FAHG HELR + RHP+Y+T+LC+++H GFCPY
Sbjct: 143 EENGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 188
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 37/46 (80%)
Query: 15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
+E G CK+G C+FAHG HELR + RHP+Y+T+LC+++H GFCPY
Sbjct: 124 EENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPY 169
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 37/46 (80%)
Query: 15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
+E G CK+G C+FAHG HELR + RHP+Y+T+LC+++H GFCPY
Sbjct: 124 EENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPY 169
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 38/46 (82%)
Query: 15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
+E+G CK+G C+FAHG HELR + RHP+Y+T+LC+++H GFCPY
Sbjct: 111 EESGACKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 156
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 37/46 (80%)
Query: 15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
+E G CK+G C+FAHG HELR + RHP+Y+T+LC+++H GFCPY
Sbjct: 124 EENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPY 169
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 26/46 (56%), Positives = 37/46 (80%)
Query: 15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
+E G CK+G C+FAHG+HELR + RHP+Y+T+ C+++H GFCPY
Sbjct: 145 EEAGECKYGEKCQFAHGSHELRNVHRHPKYKTEYCRTFHSVGFCPY 190
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 38/46 (82%)
Query: 15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
+E+G CK+G C+FAHG HELR + RHP+Y+T+LC+++H GFCPY
Sbjct: 163 EESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 208
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 38/46 (82%)
Query: 15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
+E+G CK+G C+FAHG HELR + RHP+Y+T+LC+++H GFCPY
Sbjct: 136 EESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPY 181
>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=zfs1 PE=1 SV=1
Length = 404
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 34/44 (77%)
Query: 17 TGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
+G C++G+ C+FAHG EL+ PRHP+Y+++ C+S+ G+CPY
Sbjct: 338 SGTCRYGSKCQFAHGNQELKEPPRHPKYKSERCRSFMMYGYCPY 381
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis
thaliana GN=At1g66810 PE=2 SV=1
Length = 310
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 16 ETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
ETG C +G C+FAHG ELR + RHPRY+T++C+ CPY
Sbjct: 243 ETGACCYGDNCQFAHGIDELRPVIRHPRYKTEVCRMMVTGAMCPY 287
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis
thaliana GN=At1g68200 PE=2 SV=1
Length = 308
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 16 ETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
ETG C +G C+FAHG ELR + RHPRY+T++C+ CPY
Sbjct: 233 ETGTCPYGDHCQFAHGIKELRPVIRHPRYKTEVCRMVLAGDNCPY 277
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
+ETG C +G C+FAHG ELR + RHPRY+T++C+ G CPY
Sbjct: 278 EETGACPYGDQCQFAHGVAELRPVIRHPRYKTQVCRMVLAGGVCPY 323
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
E+G C++G C+FAHG ELR RHP+Y+T+LC ++ G CPY
Sbjct: 111 SESGRCRYGAKCQFAHGLGELRQASRHPKYKTELCHKFYLQGRCPY 156
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 14 HDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
+ E+G C++G C+FAHG ELR RHP+Y+T+LC ++ G CPY
Sbjct: 105 YSESGRCRYGAKCQFAHGPGELRQANRHPKYKTELCHKFYLQGRCPY 151
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 14 HDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
+ E+G C++G C+FAHG ELR RHP+Y+T+LC ++ G CPY
Sbjct: 104 YSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPY 150
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp.
japonica GN=Os01g0645000 PE=2 SV=1
Length = 333
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
+ETG C +G C+FAHG ELR + RHPRY+T +C+ CPY
Sbjct: 268 EETGDCPYGDQCQFAHGVTELRPVIRHPRYKTAVCRMVLAGDVCPY 313
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
E+G C++G C+FAHG ELR RHP+Y+T+LC ++ G CPY
Sbjct: 111 SESGRCRYGAKCQFAHGLGELRQPSRHPKYKTELCHKFYLQGRCPY 156
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 15 DETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
E+G C++G C+FAHG ELR RHP+Y+T+LC ++ G CPY
Sbjct: 113 SESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPY 158
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza
sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1
Length = 457
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 28/45 (62%)
Query: 16 ETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
E G C +G C+FAHG ELR + RHPRY+T CQ + CPY
Sbjct: 392 ERGACPYGARCRFAHGLQELRPVIRHPRYKTLPCQMFAAASGCPY 436
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 18 GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
G CK+G C+FAHG +EL+ + YRTK C ++ + G+CPY
Sbjct: 217 GYCKYGNKCQFAHGLNELKFKKKSNNYRTKPCINWSKLGYCPY 259
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 18 GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
G C +G+ C+FAHG EL+V +RTK C ++ + G+CPY
Sbjct: 182 GSCPYGSKCQFAHGLGELKVKKSCKNFRTKPCVNWEKLGYCPY 224
>sp|A3BUD2|C3H57_ORYSJ Putative zinc finger CCCH domain-containing protein 57 OS=Oryza
sativa subsp. japonica GN=Os08g0491700 PE=4 SV=1
Length = 605
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 12 PDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
PD TG C G GC++AH ELRVI P+YRT+ C+ + C Y
Sbjct: 526 PDWCRTGHCSSGDGCEYAHSQDELRVIDARPKYRTEPCRYWLAGKGCWY 574
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1
SV=1
Length = 468
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 20 CKFGTGCKFAHGAHELRVI---PRHP--RYRTKLCQSYHQ--DGFCPYVYFFKIFHP 69
C G CKFAHG ELR R+P +Y+TKLC+++ + GFCPY + HP
Sbjct: 286 CDMGARCKFAHGLKELRATDAPARYPNNKYKTKLCKNFARGGTGFCPYGLRCEFVHP 342
>sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 OS=Caenorhabditis elegans GN=mex-6 PE=3
SV=3
Length = 467
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 20 CKFGTGCKFAHGAHELRV--IP-RHP--RYRTKLCQSYHQ--DGFCPYVYFFKIFHP 69
C G CKFAHG ELR IP R+P +Y+TKLC+++ + G CPY + HP
Sbjct: 289 CALGARCKFAHGLKELRASDIPTRYPNNKYKTKLCKNFARGGSGVCPYGLRCEFVHP 345
>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis
thaliana GN=At2g47850 PE=2 SV=2
Length = 468
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 36/86 (41%), Gaps = 18/86 (20%)
Query: 1 LLQGEILAPRPPDHDE------TGVCKFGTGCKFAHGAHELRVIPRHP----------RY 44
++Q E P P E TG CKFGT CKF H RV PR R
Sbjct: 279 VIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHH--PRDRVPPRANCVLSPIGLPLRP 336
Query: 45 RTKLCQSYHQDGFCPYVYFFKIFHPI 70
+ C Y Q+GFC + K HP+
Sbjct: 337 GVQRCTFYVQNGFCKFGSTCKFDHPM 362
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 16 ETGVCKFGTGCKFAHGAHELRVIPRHP--------RYRTKLCQSYHQDGFCPYVYFFKIF 67
+TG CKFG CKF H + + P R C Y + G C + K
Sbjct: 101 KTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYYLKTGQCKFGITCKFH 160
Query: 68 HPIPYYTT 75
HP P TT
Sbjct: 161 HPQPAGTT 168
>sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa
subsp. japonica GN=Os05g0128200 PE=2 SV=1
Length = 601
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 12 PDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQ 50
P+ + G C+ G C++AHG E + P +YRT+LC+
Sbjct: 259 PEFRKGGSCRKGDACEYAHGVFECWLHP--AQYRTRLCK 295
>sp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis
thaliana GN=HUA1 PE=1 SV=1
Length = 524
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 15/71 (21%)
Query: 16 ETGVCKFGTGCKFAHGAHELRVI----PRHPRYRTKL-----------CQSYHQDGFCPY 60
+TG CKFG CKF H A L + P+ P + L C Y + G C Y
Sbjct: 431 KTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKY 490
Query: 61 VYFFKIFHPIP 71
K HP P
Sbjct: 491 GATCKFDHPPP 501
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 9 PRPPDHDETGVCKFGTGCKFAHGAHELRV-------IPRHPRYRTKLCQSYHQDGFCPYV 61
P P + +T CK+G+ CKF H E V +P P +C Y + G C +
Sbjct: 229 PDCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDSLPERP--SEPMCTFYMKTGKCKFG 286
Query: 62 YFFKIFHP 69
K HP
Sbjct: 287 LSCKFHHP 294
>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa
subsp. japonica GN=Os12g0405100 PE=2 SV=1
Length = 454
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 16 ETGVCKFGTGCKFAH--------GAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIF 67
+TG CKFG CKF H +L V+ R K C Y + G C + K
Sbjct: 122 KTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPNEKECAYYLRTGQCKFASTCKFH 181
Query: 68 HPIPYYTTEA 77
HP P T A
Sbjct: 182 HPQPSNTMVA 191
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 14/83 (16%)
Query: 2 LQGEILAPRPPDHDE------TGVCKFGTGCKFAHGAHELRVIPRHP--------RYRTK 47
+QGE + P PD E TG CKFG CKF H L P R
Sbjct: 309 VQGENIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEP 368
Query: 48 LCQSYHQDGFCPYVYFFKIFHPI 70
+C Y + G C + K HP+
Sbjct: 369 VCTFYSRYGICKFGPNCKFDHPM 391
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 17 TGVCKFGTGCKFAH------GAHELRVIPRHP-RYRTKLCQSYHQDGFCPYVYFFKIFHP 69
TG+C+FG CKF H R+ +P R CQ Y + G C + K HP
Sbjct: 78 TGLCRFGMTCKFNHPPNRKLAVAAARMNGEYPYRVGQPECQYYLKTGTCKFGATCKFHHP 137
>sp|Q86B79|UNK_DROME RING finger protein unkempt OS=Drosophila melanogaster GN=unk PE=1
SV=1
Length = 599
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 16 ETGVCKFGTGCKFAHGAHELRVIPRHPR-YRTKLCQSYHQDGFCPYVYFFKIFHPIP 71
E G C+ G C++ H E + HP Y++ C Q G+CP F H P
Sbjct: 247 EPGNCEAGDNCQYCHTRTEQQF---HPEIYKSTKCNDVQQAGYCPRSVFCAFAHVEP 300
>sp|Q10EL1|C3H24_ORYSJ Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa
subsp. japonica GN=Os03g0698800 PE=2 SV=1
Length = 764
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 18 GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQ 50
GVC+ G C++AHG E + P +YRT+LC+
Sbjct: 333 GVCRRGDMCEYAHGVFECWLHP--AQYRTRLCK 363
>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis
thaliana GN=ZFN2 PE=2 SV=1
Length = 453
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 16 ETGVCKFGTGCKFAH-------GAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFH 68
ETG CK+G CK+ H G V+ R K C Y Q G C + K H
Sbjct: 95 ETGACKYGPTCKYHHPKDRNGAGPVLFNVLGLPMRQGEKPCPYYMQTGLCRFGVACKFHH 154
Query: 69 PIPYYTTEAG 78
P P+ G
Sbjct: 155 PHPHSQPSNG 164
>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis
thaliana GN=At3g48440 PE=1 SV=1
Length = 448
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 17 TGVCKFGTGCKFAHGAHELRVIPRHPRYRTKL----------CQSYHQDGFCPYVYFFKI 66
TG CKFG+ CKF H I R + R K C+ Y + G C Y +
Sbjct: 122 TGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKYYFRTGGCKYGETCRF 181
Query: 67 FHPIP 71
H IP
Sbjct: 182 NHTIP 186
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 9 PRPPDHDE------TGVCKFGTGCKFAHGAHELRVIPRHP--------RYRTKLCQSYHQ 54
P PD E TG CKF CK+ H + L +P + R +C Y +
Sbjct: 344 PERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSR 403
Query: 55 DGFCPYVYFFKIFHPI-PYYTTEA 77
G C + + H + P Y+TE+
Sbjct: 404 YGICKFGPACRFDHSVQPPYSTES 427
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 17 TGVCKFGTGCKFAH--------GAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFH 68
TG CK+G C+F H A EL + R C Y ++G C Y K H
Sbjct: 170 TGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGAECKFNH 229
Query: 69 PIPYYTTEAGT 79
P P TT GT
Sbjct: 230 PDP--TTIGGT 238
>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp.
japonica GN=Os01g0258700 PE=2 SV=2
Length = 476
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 16 ETGVCKFGTGCKFAHGAHELRVIPRH-------PRYRTKLCQSYHQDGFCPYVYFFKIFH 68
+TG CKFGT CK+ H + V+P R K C Y + G C + K H
Sbjct: 119 KTGTCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCKFHH 178
Query: 69 P 69
P
Sbjct: 179 P 179
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 17 TGVCKFGTGCKFAHGAHELRV-----------IPRHPRYRTKLCQSYHQDGFCPYVYFFK 65
TG CKFG CK+ H EL +P P + C Y Q+G+C Y K
Sbjct: 319 TGDCKFGATCKYHH-PRELSAPKSGYMVNSLCLPLRP--GAQPCAYYAQNGYCRYGVACK 375
Query: 66 IFHPI 70
HP+
Sbjct: 376 YDHPM 380
>sp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis
thaliana GN=At2g41900 PE=1 SV=2
Length = 716
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 12 PDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQ 50
PD G C+ G C++AHG E + P +YRT+LC+
Sbjct: 308 PDF-RKGACRRGDMCEYAHGVFECWLHP--AQYRTRLCK 343
>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis
thaliana GN=At1g32360 PE=2 SV=1
Length = 384
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 17 TGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCP 59
TG C FG C FAHGA EL R+ L + +DG P
Sbjct: 272 TGYCPFGAKCHFAHGAAELH------RFGGGLVEEEGKDGVSP 308
>sp|Q9LXV4|C3H56_ARATH Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis
thaliana GN=At5g12850 PE=2 SV=1
Length = 706
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 12 PDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQ 50
PD + G CK G C++AHG E + P +YRT+LC+
Sbjct: 304 PDF-KKGSCKQGDMCEYAHGVFECWLHP--AQYRTRLCK 339
>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa
subsp. japonica GN=Os11g0472000 PE=2 SV=2
Length = 444
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 16 ETGVCKFGTGCKFAHGAHELRVIPR-------HP-RYRTKLCQSYHQDGFCPYVYFFKIF 67
+TG CKFG CKF H + + R +P R K C Y + G C + K
Sbjct: 112 KTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNEKECAYYLRTGQCKFGSTCKFH 171
Query: 68 HPIPYYTTEA 77
HP P T A
Sbjct: 172 HPQPSNTMVA 181
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 17 TGVCKFGTGCKFAHGAHE------LRVIPRHP-RYRTKLCQSYHQDGFCPYVYFFKIFHP 69
TG+C+FG CKF H A R+ +P R CQ Y + G C + K HP
Sbjct: 68 TGLCRFGMTCKFNHPADRKMAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHP 127
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 18/85 (21%)
Query: 2 LQGEILAPRPPDHDE------TGVCKFGTGCKFAHGAHELRVIPRHP----------RYR 45
+Q E + P PD E TG CKFG CKF H + R+IP R
Sbjct: 300 VQRESIFPERPDQPECQFYMKTGDCKFGAVCKFHH--PKERIIPTPNCALSSLGLPLRPG 357
Query: 46 TKLCQSYHQDGFCPYVYFFKIFHPI 70
+C Y + G C + K HP+
Sbjct: 358 EPICTFYSRYGICKFGPNCKFDHPM 382
>sp|Q84SL2|C3H50_ORYSJ Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa
subsp. japonica GN=Os07g0568300 PE=2 SV=1
Length = 657
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 12 PDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQ 50
P+ G C G C+F+HG E + P +YRT+LC+
Sbjct: 281 PNFRRPGGCPSGDSCEFSHGVFESWLHPS--QYRTRLCK 317
>sp|Q4KLT3|TRM44_XENLA Probable tRNA (uracil-O(2)-)-methyltransferase OS=Xenopus laevis
GN=trmt44 PE=2 SV=1
Length = 668
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 14 HDETGVCKFGTGCKFAHGAHELR--VIPRHPRYRTKLC 49
H G + C +AHGA ELR I R R KLC
Sbjct: 630 HHPNGCPRVAKSCPYAHGAEELRPSFISRRKNPRNKLC 667
>sp|Q94JI5|C3H10_ORYSJ Zinc finger CCCH domain-containing protein 10 OS=Oryza sativa
subsp. japonica GN=Os01g0738400 PE=2 SV=1
Length = 225
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 18 GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQS 51
C G+GC FAHG E + P RYRT+ C+S
Sbjct: 99 AACPRGSGCPFAHGTFETWLHPS--RYRTRPCRS 130
>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa
subsp. japonica GN=Os08g0159800 PE=2 SV=1
Length = 367
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 17 TGVCKFGTGCKFAHGAHEL 35
TG C FG+ C FAHGA EL
Sbjct: 257 TGYCPFGSKCHFAHGAAEL 275
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 18 GVCKFGTGCKFAHGAHELRVIP 39
G C + T C FAHG ELR P
Sbjct: 99 GTCPYVTNCNFAHGMEELRKPP 120
>sp|Q06053|DUS3_YEAST tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS3 PE=1
SV=2
Length = 668
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 6 ILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKL---CQSYHQDGFCP 59
+L PR H + C FG C+F H + L + + P + + C ++ GFCP
Sbjct: 96 VLCPRLI-HGDISKCSFGDNCRFVHDIN-LYLSTKKPEVESNIFPSCPVFNSLGFCP 150
>sp|A7A1S5|DUS3_YEAS7 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain YJM789) GN=DUS3 PE=3 SV=1
Length = 668
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 6 ILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKL---CQSYHQDGFCP 59
+L PR H + C FG C+F H + L + + P + + C ++ GFCP
Sbjct: 96 VLCPRLI-HGDISKCSFGDNCRFVHDIN-LYLSTKKPEVESNIFPSCPVFNSLGFCP 150
>sp|Q9XEE6|C3H29_ARATH Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis
thaliana GN=At2g40140 PE=2 SV=1
Length = 597
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 18 GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFF 64
G C G C++AHG E + P +YRT+LC+ + G V FF
Sbjct: 266 GSCPKGDSCEYAHGVFESWLHP--AQYRTRLCKD--ETGCARRVCFF 308
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1
SV=6
Length = 2649
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 7 LAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
L P+P +C++G C AH A EL+ R + Q+ QDG PY
Sbjct: 90 LCPKP------DLCEYGDACTKAHSAQELQEWVRRTQAVELRGQAAWQDGLVPY 137
>sp|Q9FU27|C3H2_ORYSJ Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp.
japonica GN=Os01g0192000 PE=2 SV=1
Length = 386
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 12 PDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQ 50
PD + G CK G C++AHG E + P RYRT+ C+
Sbjct: 123 PDFRKGG-CKRGDACEYAHGVFECWLHP--ARYRTQPCK 158
>sp|Q9ZWA1|C3H2_ARATH Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis
thaliana GN=At1g03790 PE=2 SV=1
Length = 393
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 12 PDHDETGVCKFGTGCKFAHGAHELRVIPRHP-RYRTKLCQ 50
P+ G C G C+FAHG E + HP RYRT+ C+
Sbjct: 129 PEFRRGGDCSRGDDCEFAHGVFECWL---HPIRYRTEACK 165
>sp|O65036|C3H54_ARATH Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis
thaliana GN=PEI1 PE=1 SV=1
Length = 245
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 17 TGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQS 51
G C G C+FAHG E + P RYRT+ C +
Sbjct: 103 NGACHRGDSCEFAHGVFEYWLHP--ARYRTRACNA 135
>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa
subsp. japonica GN=Os01g0917400 PE=2 SV=2
Length = 439
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 18/85 (21%)
Query: 2 LQGEILAPRPPDHDE------TGVCKFGTGCKFAHGAHELRVIPRHP----------RYR 45
LQ E + P PD E TG CKFG CKF H +R +P R
Sbjct: 323 LQRENVFPERPDQPECQYYMKTGDCKFGAVCKFHH--PRVRSMPTPDCVLSPVGLPLRPG 380
Query: 46 TKLCQSYHQDGFCPYVYFFKIFHPI 70
+LC+ Y + G C + K HP
Sbjct: 381 EELCKFYSRYGICKFGANCKFDHPT 405
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 16 ETGVCKFGTGCKFAH--------GAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIF 67
+TG CKFG CKF H G +L + R K C Y + G C Y K
Sbjct: 136 KTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFH 195
Query: 68 HP 69
HP
Sbjct: 196 HP 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.147 0.510
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,555,605
Number of Sequences: 539616
Number of extensions: 1355627
Number of successful extensions: 2673
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2395
Number of HSP's gapped (non-prelim): 288
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)