Query psy15067
Match_columns 80
No_of_seqs 103 out of 971
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 19:35:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1677|consensus 99.7 8.6E-19 1.9E-23 125.1 4.3 70 5-74 129-205 (332)
2 COG5063 CTH1 CCCH-type Zn-fing 99.3 9.9E-13 2.1E-17 94.4 2.8 69 6-74 226-302 (351)
3 KOG1595|consensus 99.2 3.6E-12 7.8E-17 96.4 2.7 65 5-77 233-298 (528)
4 COG5063 CTH1 CCCH-type Zn-fing 99.1 3.9E-11 8.5E-16 86.3 3.1 73 5-77 271-345 (351)
5 PF00642 zf-CCCH: Zinc finger 99.0 2.4E-11 5.2E-16 58.8 -0.5 26 6-31 1-26 (27)
6 KOG2333|consensus 98.9 6.3E-10 1.4E-14 84.4 1.5 62 8-71 76-139 (614)
7 PF00642 zf-CCCH: Zinc finger 98.8 5.5E-10 1.2E-14 54.0 -0.4 27 44-70 1-27 (27)
8 smart00356 ZnF_C3H1 zinc finge 98.6 3E-08 6.5E-13 47.0 2.2 25 6-31 2-26 (27)
9 KOG1040|consensus 98.6 2.5E-08 5.3E-13 72.5 1.9 57 5-71 74-130 (325)
10 smart00356 ZnF_C3H1 zinc finge 98.4 1.6E-07 3.5E-12 44.4 2.0 26 44-70 2-27 (27)
11 KOG1677|consensus 98.3 5.6E-07 1.2E-11 64.4 4.2 66 9-74 87-161 (332)
12 KOG2494|consensus 98.1 5.8E-07 1.3E-11 65.2 0.2 60 8-74 37-97 (331)
13 KOG1595|consensus 98.1 2.1E-06 4.4E-11 65.6 3.1 64 4-72 197-261 (528)
14 KOG1763|consensus 97.8 3.2E-06 6.9E-11 61.0 -1.0 65 7-72 91-192 (343)
15 COG5252 Uncharacterized conser 97.4 1.9E-05 4E-10 55.8 -1.3 65 7-72 84-177 (299)
16 COG5084 YTH1 Cleavage and poly 97.4 0.00024 5.1E-09 51.1 4.0 57 6-70 102-158 (285)
17 KOG1492|consensus 97.2 0.00023 5E-09 50.5 1.8 62 8-72 206-285 (377)
18 KOG2185|consensus 97.0 0.00025 5.4E-09 53.3 1.0 25 8-33 140-164 (486)
19 COG5152 Uncharacterized conser 97.0 0.00025 5.4E-09 49.2 0.5 28 46-73 141-168 (259)
20 KOG1040|consensus 96.9 0.00062 1.3E-08 49.7 2.2 28 7-34 104-131 (325)
21 PF14608 zf-CCCH_2: Zinc finge 96.8 0.0009 1.9E-08 29.6 1.5 18 10-30 1-18 (19)
22 KOG1492|consensus 96.7 0.00076 1.6E-08 47.9 1.5 62 8-70 233-312 (377)
23 COG5152 Uncharacterized conser 96.6 0.00076 1.6E-08 46.8 0.9 29 8-36 141-169 (259)
24 COG5084 YTH1 Cleavage and poly 96.2 0.0061 1.3E-07 43.9 3.4 56 8-72 134-191 (285)
25 KOG2185|consensus 96.1 0.0025 5.5E-08 48.0 1.1 26 46-72 140-165 (486)
26 KOG1813|consensus 95.4 0.0044 9.6E-08 44.9 0.2 28 8-35 186-213 (313)
27 KOG1813|consensus 94.7 0.0092 2E-07 43.3 0.2 29 45-73 185-213 (313)
28 KOG2494|consensus 94.7 0.013 2.7E-07 43.0 0.8 32 47-79 38-70 (331)
29 KOG1039|consensus 93.6 0.028 6E-07 41.5 0.7 24 47-71 9-32 (344)
30 KOG1039|consensus 92.9 0.036 7.9E-07 40.9 0.5 24 9-33 9-32 (344)
31 KOG4791|consensus 90.5 0.078 1.7E-06 41.1 -0.0 61 9-72 4-86 (667)
32 KOG1763|consensus 89.1 0.081 1.7E-06 38.7 -0.8 30 44-74 90-119 (343)
33 KOG4791|consensus 87.1 0.39 8.4E-06 37.5 1.7 27 8-36 32-58 (667)
34 PF10650 zf-C3H1: Putative zin 83.9 0.87 1.9E-05 21.0 1.4 20 10-30 2-21 (23)
35 KOG2333|consensus 76.7 1.5 3.3E-05 34.4 1.5 25 6-30 112-136 (614)
36 KOG2202|consensus 68.7 2.6 5.6E-05 30.2 1.0 25 8-33 152-176 (260)
37 KOG2202|consensus 67.2 2.5 5.4E-05 30.3 0.7 27 9-35 16-42 (260)
38 KOG3702|consensus 61.4 9.8 0.00021 30.7 3.1 24 7-34 543-566 (681)
39 KOG3702|consensus 60.3 11 0.00023 30.4 3.1 17 18-34 586-607 (681)
40 KOG0153|consensus 54.7 8.5 0.00018 28.9 1.6 27 6-33 159-185 (377)
41 COG5252 Uncharacterized conser 54.6 2.5 5.5E-05 30.3 -1.1 28 44-72 83-110 (299)
42 PF10283 zf-CCHH: Zinc-finger 53.6 3.5 7.7E-05 19.5 -0.3 7 20-26 3-9 (26)
43 PF06373 CART: Cocaine and amp 51.1 8 0.00017 22.6 0.8 30 19-66 38-67 (73)
44 KOG0153|consensus 45.2 12 0.00025 28.2 1.1 25 47-72 162-186 (377)
45 KOG3777|consensus 28.2 47 0.001 25.7 2.0 23 47-72 172-194 (443)
46 COG1908 FrhD Coenzyme F420-red 27.0 26 0.00057 22.6 0.4 15 19-34 61-75 (132)
47 COG5175 MOT2 Transcriptional r 23.4 33 0.00071 26.1 0.4 27 46-73 202-228 (480)
48 PF08098 ATX_III: Anemonia sul 21.3 52 0.0011 15.4 0.7 11 55-65 12-22 (27)
49 KOG2135|consensus 20.2 30 0.00065 27.1 -0.3 28 8-35 212-239 (526)
No 1
>KOG1677|consensus
Probab=99.75 E-value=8.6e-19 Score=125.12 Aligned_cols=70 Identities=34% Similarity=0.749 Sum_probs=64.1
Q ss_pred CCCCCCCccccCCCCCCC-CCCCcccccccccc------ccCCCCCccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067 5 EILAPRPPDHDETGVCKF-GTGCKFAHGAHELR------VIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT 74 (80)
Q Consensus 5 ~~~~~lC~~f~~~g~C~~-G~~C~faH~~~e~~------~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~ 74 (80)
-+++++|..|...|.|+| |++|+|+|+.++++ ....+++++|++|..|..+|.|+||.+|+|+|+....+
T Consensus 129 ~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~ 205 (332)
T KOG1677|consen 129 RYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR 205 (332)
T ss_pred cccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence 478999999999999999 99999999999999 33467899999999999999999999999999988655
No 2
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=99.31 E-value=9.9e-13 Score=94.41 Aligned_cols=69 Identities=26% Similarity=0.554 Sum_probs=59.9
Q ss_pred CCC--CCCccccCCCCCCC---CCCCccc---cccccccccCCCCCccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067 6 ILA--PRPPDHDETGVCKF---GTGCKFA---HGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT 74 (80)
Q Consensus 6 ~~~--~lC~~f~~~g~C~~---G~~C~fa---H~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~ 74 (80)
+++ +||..|-..|.|++ |+.|+|+ |+..++....-...++|++|.+|...|+|+||.+|.|.|+.+..+
T Consensus 226 ~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~i 302 (351)
T COG5063 226 YKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDI 302 (351)
T ss_pred hcCCHHHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhc
Confidence 455 89999988899999 9999999 999888765544568999999999999999999999999987643
No 3
>KOG1595|consensus
Probab=99.24 E-value=3.6e-12 Score=96.41 Aligned_cols=65 Identities=31% Similarity=0.627 Sum_probs=56.8
Q ss_pred CCCCCCCccccCCCCCCCCCCCccccccccccccCCCC-CccccccccccccccCCCCCCCcccCCCCCCCCCC
Q psy15067 5 EILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHP-RYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTTEA 77 (80)
Q Consensus 5 ~~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p-~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~ 77 (80)
.|....|+.|. +|.|+.||.|+|||++.|.. .|| .|||++|+.- |+|++ .-|.|+|..+++++..
T Consensus 233 hYs~tpCPefr-kG~C~rGD~CEyaHgvfEcw---LHPa~YRT~~CkDg---~~C~R-rvCfFAH~~eqLR~l~ 298 (528)
T KOG1595|consen 233 HYSSTPCPEFR-KGSCERGDSCEYAHGVFECW---LHPARYRTRKCKDG---GYCPR-RVCFFAHSPEQLRPLP 298 (528)
T ss_pred cccCccCcccc-cCCCCCCCccccccceehhh---cCHHHhccccccCC---CCCcc-ceEeeecChHHhcccC
Confidence 35688999997 59999999999999999988 566 7999999954 89998 9999999999987654
No 4
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=99.12 E-value=3.9e-11 Score=86.26 Aligned_cols=73 Identities=15% Similarity=0.212 Sum_probs=64.1
Q ss_pred CCCCCCCccccCCCCCCCCCCCccccccccccccCCCC--CccccccccccccccCCCCCCCcccCCCCCCCCCC
Q psy15067 5 EILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHP--RYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTTEA 77 (80)
Q Consensus 5 ~~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p--~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~ 77 (80)
.|+|+.|.+|...|.|+||.+|.|+|+..+...++.++ .++..+|+.+...|.|++|.+|.++|+...+...+
T Consensus 271 ~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~~~s~ 345 (351)
T COG5063 271 NFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNLDFSV 345 (351)
T ss_pred ccccCCccchhhcccCccccccccccCChhhccccccccccccccccccccccCccCCCCchhhccccchhhhhh
Confidence 57899999999999999999999999988877666665 67889999999999999999999999987765443
No 5
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=99.04 E-value=2.4e-11 Score=58.80 Aligned_cols=26 Identities=38% Similarity=0.673 Sum_probs=16.8
Q ss_pred CCCCCCccccCCCCCCCCCCCccccc
Q psy15067 6 ILAPRPPDHDETGVCKFGTGCKFAHG 31 (80)
Q Consensus 6 ~~~~lC~~f~~~g~C~~G~~C~faH~ 31 (80)
+++++|++|+..|.|++|++|+|+|+
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred CccccChhhccCCccCCCCCcCccCC
Confidence 46677777777777777777777776
No 6
>KOG2333|consensus
Probab=98.87 E-value=6.3e-10 Score=84.36 Aligned_cols=62 Identities=21% Similarity=0.459 Sum_probs=51.8
Q ss_pred CCCCccccCC--CCCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCC
Q psy15067 8 APRPPDHDET--GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIP 71 (80)
Q Consensus 8 ~~lC~~f~~~--g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~ 71 (80)
..||+..... ..|.|||+|+|.||++.+...+ +......|+.|...|+||+|-+|||+-...
T Consensus 76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK--~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHl 139 (614)
T KOG2333|consen 76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATK--APDIGPSCPVFESLGFCPYGFKCRFLGAHL 139 (614)
T ss_pred hccChHhhcCCCccCcccccccccccHHHHHhcc--CcccCCccceeeccccCCccceeehhhccc
Confidence 6899998765 4699999999999999987654 334567899999999999999999986543
No 7
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.81 E-value=5.5e-10 Score=53.97 Aligned_cols=27 Identities=33% Similarity=0.706 Sum_probs=21.5
Q ss_pred ccccccccccccccCCCCCCCcccCCC
Q psy15067 44 YRTKLCQSYHQDGFCPYVYFFKIFHPI 70 (80)
Q Consensus 44 ~kt~~C~~f~~~G~C~~G~~C~f~H~~ 70 (80)
+++.+|+.|...|.|++|++|+|+|+.
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 468899999999999999999999973
No 8
>smart00356 ZnF_C3H1 zinc finger.
Probab=98.61 E-value=3e-08 Score=47.01 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=17.0
Q ss_pred CCCCCCccccCCCCCCCCCCCccccc
Q psy15067 6 ILAPRPPDHDETGVCKFGTGCKFAHG 31 (80)
Q Consensus 6 ~~~~lC~~f~~~g~C~~G~~C~faH~ 31 (80)
+++.+|+.| ..|.|++|++|+|+|+
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence 456677777 5677777777777775
No 9
>KOG1040|consensus
Probab=98.57 E-value=2.5e-08 Score=72.49 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=46.9
Q ss_pred CCCCCCCccccCCCCCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCC
Q psy15067 5 EILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIP 71 (80)
Q Consensus 5 ~~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~ 71 (80)
.....+|++|. .|.|+.||.|.|+|.. ++. +...|..|+..|.|.++..|.|.|...
T Consensus 74 ~~~~~vcK~~l-~glC~kgD~C~Flhe~-~~~--------k~rec~ff~~~g~c~~~~~c~y~h~dp 130 (325)
T KOG1040|consen 74 SRGKVVCKHWL-RGLCKKGDQCEFLHEY-DLT--------KMRECKFFSLFGECTNGKDCPYLHGDP 130 (325)
T ss_pred cCCceeehhhh-hhhhhccCcCcchhhh-hhc--------ccccccccccccccccccCCcccCCCh
Confidence 45688999997 6999999999999987 444 245788888888888888888888874
No 10
>smart00356 ZnF_C3H1 zinc finger.
Probab=98.42 E-value=1.6e-07 Score=44.40 Aligned_cols=26 Identities=42% Similarity=1.044 Sum_probs=22.9
Q ss_pred ccccccccccccccCCCCCCCcccCCC
Q psy15067 44 YRTKLCQSYHQDGFCPYVYFFKIFHPI 70 (80)
Q Consensus 44 ~kt~~C~~f~~~G~C~~G~~C~f~H~~ 70 (80)
+++.+|+.| ..|.|++|++|+|+|+.
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 467799977 89999999999999974
No 11
>KOG1677|consensus
Probab=98.35 E-value=5.6e-07 Score=64.37 Aligned_cols=66 Identities=30% Similarity=0.624 Sum_probs=55.7
Q ss_pred CCCccccCCCCCCCCCCCccccccccccccC--------CCCCccccccccccccccCCC-CCCCcccCCCCCCC
Q psy15067 9 PRPPDHDETGVCKFGTGCKFAHGAHELRVIP--------RHPRYRTKLCQSYHQDGFCPY-VYFFKIFHPIPYYT 74 (80)
Q Consensus 9 ~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~--------~~p~~kt~~C~~f~~~G~C~~-G~~C~f~H~~~~~~ 74 (80)
..|..+...+.|.++..|++.|...+.+... ....+++.+|..|...|.|+| |+.|+|+|+.++.+
T Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r 161 (332)
T KOG1677|consen 87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELR 161 (332)
T ss_pred cccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCccccc
Confidence 6888888889999999999999874444322 123789999999999999999 99999999999876
No 12
>KOG2494|consensus
Probab=98.12 E-value=5.8e-07 Score=65.23 Aligned_cols=60 Identities=27% Similarity=0.365 Sum_probs=45.2
Q ss_pred CCCCccccCCCCCCCCCC-CccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067 8 APRPPDHDETGVCKFGTG-CKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT 74 (80)
Q Consensus 8 ~~lC~~f~~~g~C~~G~~-C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~ 74 (80)
-++||.|+ .+.|.+||. |+|+|..+..... +-+-.-|.+| +.|.|.+ +.|+|+|.+..++
T Consensus 37 ~eVCReF~-rn~C~R~d~~CkfaHP~~~~~V~----~g~v~aC~Ds-~kgrCsR-~nCkylHpp~hlk 97 (331)
T KOG2494|consen 37 LEVCREFL-RNTCSRGDRECKFAHPPKNCQVS----NGRVIACFDS-QKGRCSR-ENCKYLHPPQHLK 97 (331)
T ss_pred HHHHHHHH-hccccCCCccccccCCCCCCCcc----CCeEEEEecc-ccCccCc-ccceecCCChhhh
Confidence 46899998 588999999 9999987644432 2234569866 4788984 5599999987654
No 13
>KOG1595|consensus
Probab=98.12 E-value=2.1e-06 Score=65.62 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=48.9
Q ss_pred cCCCCCCCccccCCCCCCCCCCCcccc-ccccccccCCCCCccccccccccccccCCCCCCCcccCCCCC
Q psy15067 4 GEILAPRPPDHDETGVCKFGTGCKFAH-GAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPY 72 (80)
Q Consensus 4 ~~~~~~lC~~f~~~g~C~~G~~C~faH-~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~ 72 (80)
.+||++.|+.= .|.-+-.|-|+| +...-|..|+.=.|..++|+.|. .|.|+.|+.|.|+|+.-+
T Consensus 197 y~fKir~C~R~----~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefr-kG~C~rGD~CEyaHgvfE 261 (528)
T KOG1595|consen 197 YSFKIRRCSRP----RSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFR-KGSCERGDSCEYAHGVFE 261 (528)
T ss_pred EeeeecccCCc----cCCCcccCCccCCCcccccCCcccccccCccCcccc-cCCCCCCCccccccceeh
Confidence 36788999743 688889999999 65555532222247789999886 499999999999999765
No 14
>KOG1763|consensus
Probab=97.78 E-value=3.2e-06 Score=61.01 Aligned_cols=65 Identities=28% Similarity=0.456 Sum_probs=45.7
Q ss_pred CCCCCccccCCCCCCCCCCCccccccccccccC--------C----------------C--CCccc-cccccccc-----
Q psy15067 7 LAPRPPDHDETGVCKFGTGCKFAHGAHELRVIP--------R----------------H--PRYRT-KLCQSYHQ----- 54 (80)
Q Consensus 7 ~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~--------~----------------~--p~~kt-~~C~~f~~----- 54 (80)
|+.+|-.| ..|.|..|+.|.|+|+....+... + + |...| .+|++|..
T Consensus 91 KSvvCafF-k~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE~~ 169 (343)
T KOG1763|consen 91 KSVVCAFF-KQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVENG 169 (343)
T ss_pred hHHHHHHH-hccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC
Confidence 57789877 479999999999999988765321 0 0 11111 47996542
Q ss_pred -ccc---CCCCC-CCcccCCCCC
Q psy15067 55 -DGF---CPYVY-FFKIFHPIPY 72 (80)
Q Consensus 55 -~G~---C~~G~-~C~f~H~~~~ 72 (80)
.|+ ||+|. .|.|.|-.+.
T Consensus 170 kYGWfW~CPnGg~~C~YrHaLP~ 192 (343)
T KOG1763|consen 170 KYGWFWECPNGGDKCIYRHALPE 192 (343)
T ss_pred CccceeECCCCCCeeeeeecCCc
Confidence 343 99986 8999998765
No 15
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=97.41 E-value=1.9e-05 Score=55.81 Aligned_cols=65 Identities=26% Similarity=0.444 Sum_probs=46.5
Q ss_pred CCCCCccccCCCCCCCCCCCccccccccccccC-------------CC-----CCc-cccccccccc------cc---cC
Q psy15067 7 LAPRPPDHDETGVCKFGTGCKFAHGAHELRVIP-------------RH-----PRY-RTKLCQSYHQ------DG---FC 58 (80)
Q Consensus 7 ~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~-------------~~-----p~~-kt~~C~~f~~------~G---~C 58 (80)
|+.+|..|. .+.|..|+.|+|+|+.++.+... .. |.. -..+|++|-. .| .|
T Consensus 84 K~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~C 162 (299)
T COG5252 84 KTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWTC 162 (299)
T ss_pred hhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceeeC
Confidence 577888885 78999999999999988876431 01 111 1267995542 23 39
Q ss_pred CCC-CCCcccCCCCC
Q psy15067 59 PYV-YFFKIFHPIPY 72 (80)
Q Consensus 59 ~~G-~~C~f~H~~~~ 72 (80)
|+| .+|.|.|..+.
T Consensus 163 Png~~~C~y~H~Lp~ 177 (299)
T COG5252 163 PNGNMRCSYIHKLPD 177 (299)
T ss_pred CCCCceeeeeeccCc
Confidence 988 79999998776
No 16
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=97.38 E-value=0.00024 Score=51.10 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=41.6
Q ss_pred CCCCCCccccCCCCCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCC
Q psy15067 6 ILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPI 70 (80)
Q Consensus 6 ~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~ 70 (80)
+...+|+.|. .|.|+-++.|.|+|+..-... .+.+|+.|...|.|..|..|.+.|.+
T Consensus 102 ~s~V~c~~~~-~g~c~s~~~c~~lh~~d~~~s-------~~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 102 SSSVVCKFFL-RGLCKSGFSCEFLHEYDLRSS-------QGPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred cCCcccchhc-cccCcCCCccccccCCCcccc-------cCCCcccccccceeccCCCCCccccC
Confidence 4467899885 689999999999998764442 14567766677777777777777765
No 17
>KOG1492|consensus
Probab=97.15 E-value=0.00023 Score=50.46 Aligned_cols=62 Identities=24% Similarity=0.407 Sum_probs=42.2
Q ss_pred CCCCccccCCCCCCCCCCCccccccccccccC------------------CCCCccccccccccccccCCCCCCCcccCC
Q psy15067 8 APRPPDHDETGVCKFGTGCKFAHGAHELRVIP------------------RHPRYRTKLCQSYHQDGFCPYVYFFKIFHP 69 (80)
Q Consensus 8 ~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~------------------~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~ 69 (80)
+..|++|..+|.|-.|..|+|.|....-.--+ ..| .+-..|+ |+..|.|- .+.|||.|-
T Consensus 206 avycryynangicgkgaacrfvheptrkticpkflngrcnkaedcnlsheldp-rripacr-yfllgkcn-npncryvhi 282 (377)
T KOG1492|consen 206 AVYCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDP-RRIPACR-YFLLGKCN-NPNCRYVHI 282 (377)
T ss_pred eeEEEEecCCCcccCCceeeeeccccccccChHHhcCccCchhcCCcccccCc-cccchhh-hhhhccCC-CCCceEEEE
Confidence 56799998899999999999999755422100 112 2235688 55678884 778888886
Q ss_pred CCC
Q psy15067 70 IPY 72 (80)
Q Consensus 70 ~~~ 72 (80)
.-.
T Consensus 283 hys 285 (377)
T KOG1492|consen 283 HYS 285 (377)
T ss_pred eec
Confidence 543
No 18
>KOG2185|consensus
Probab=97.01 E-value=0.00025 Score=53.32 Aligned_cols=25 Identities=32% Similarity=0.696 Sum_probs=21.6
Q ss_pred CCCCccccCCCCCCCCCCCccccccc
Q psy15067 8 APRPPDHDETGVCKFGTGCKFAHGAH 33 (80)
Q Consensus 8 ~~lC~~f~~~g~C~~G~~C~faH~~~ 33 (80)
-.+|++|+ .|.|+|+++|+|+|+..
T Consensus 140 MkpC~ffL-eg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 140 MKPCKFFL-EGRCRFGENCRFSHGLD 164 (486)
T ss_pred hccchHhh-ccccccCcccccccCcc
Confidence 36899887 58999999999999865
No 19
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.95 E-value=0.00025 Score=49.15 Aligned_cols=28 Identities=25% Similarity=0.685 Sum_probs=24.9
Q ss_pred ccccccccccccCCCCCCCcccCCCCCC
Q psy15067 46 TKLCQSYHQDGFCPYVYFFKIFHPIPYY 73 (80)
Q Consensus 46 t~~C~~f~~~G~C~~G~~C~f~H~~~~~ 73 (80)
..+|+.|..+|+|-||+.|.|+|+.+..
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D~ 168 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSDF 168 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhhh
Confidence 3679999999999999999999997754
No 20
>KOG1040|consensus
Probab=96.90 E-value=0.00062 Score=49.74 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=24.3
Q ss_pred CCCCCccccCCCCCCCCCCCcccccccc
Q psy15067 7 LAPRPPDHDETGVCKFGTGCKFAHGAHE 34 (80)
Q Consensus 7 ~~~lC~~f~~~g~C~~G~~C~faH~~~e 34 (80)
+-+.|.+|...|.|..++.|.|.|...+
T Consensus 104 k~rec~ff~~~g~c~~~~~c~y~h~dpq 131 (325)
T KOG1040|consen 104 KMRECKFFSLFGECTNGKDCPYLHGDPQ 131 (325)
T ss_pred ccccccccccccccccccCCcccCCChh
Confidence 4568999999999999999999998743
No 21
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=96.79 E-value=0.0009 Score=29.59 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=11.7
Q ss_pred CCccccCCCCCCCCCCCcccc
Q psy15067 10 RPPDHDETGVCKFGTGCKFAH 30 (80)
Q Consensus 10 lC~~f~~~g~C~~G~~C~faH 30 (80)
+|++|.. |+.+++|.|+|
T Consensus 1 ~Ck~~~~---C~~~~~C~f~H 18 (19)
T PF14608_consen 1 PCKFGPN---CTNGDNCPFSH 18 (19)
T ss_pred CCcCcCC---CCCCCcCccCC
Confidence 3664432 77777777777
No 22
>KOG1492|consensus
Probab=96.72 E-value=0.00076 Score=47.87 Aligned_cols=62 Identities=21% Similarity=0.413 Sum_probs=47.3
Q ss_pred CCCCccccCCCCCCCCCCCccccccccccccC---------CCC---------CccccccccccccccCCCCCCCcccCC
Q psy15067 8 APRPPDHDETGVCKFGTGCKFAHGAHELRVIP---------RHP---------RYRTKLCQSYHQDGFCPYVYFFKIFHP 69 (80)
Q Consensus 8 ~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~---------~~p---------~~kt~~C~~f~~~G~C~~G~~C~f~H~ 69 (80)
..+|+.|. +|.|...+.|..+|.....|-+. ..| ..-..+|..|...|+|--|-.|.-.|-
T Consensus 233 kticpkfl-ngrcnkaedcnlsheldprripacryfllgkcnnpncryvhihysenapicfefakygfcelgtscknqhi 311 (377)
T KOG1492|consen 233 KTICPKFL-NGRCNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKYGFCELGTSCKNQHI 311 (377)
T ss_pred cccChHHh-cCccCchhcCCcccccCccccchhhhhhhccCCCCCceEEEEeecCCCceeeeehhcceecccccccccee
Confidence 46899997 79999999999999877655321 112 112367999999999999999997776
Q ss_pred C
Q psy15067 70 I 70 (80)
Q Consensus 70 ~ 70 (80)
.
T Consensus 312 l 312 (377)
T KOG1492|consen 312 L 312 (377)
T ss_pred e
Confidence 4
No 23
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.62 E-value=0.00076 Score=46.81 Aligned_cols=29 Identities=34% Similarity=0.738 Sum_probs=26.1
Q ss_pred CCCCccccCCCCCCCCCCCcccccccccc
Q psy15067 8 APRPPDHDETGVCKFGTGCKFAHGAHELR 36 (80)
Q Consensus 8 ~~lC~~f~~~g~C~~G~~C~faH~~~e~~ 36 (80)
..+|+.|..+|.|-|||.|+|.|+.+++.
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D~K 169 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSDFK 169 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhhhh
Confidence 57899999999999999999999988654
No 24
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=96.17 E-value=0.0061 Score=43.91 Aligned_cols=56 Identities=25% Similarity=0.487 Sum_probs=45.0
Q ss_pred CCCCccccCCCCCCCCCCCccccccccccccCCCCCccccccccccc--cccCCCCCCCcccCCCCC
Q psy15067 8 APRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQ--DGFCPYVYFFKIFHPIPY 72 (80)
Q Consensus 8 ~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~--~G~C~~G~~C~f~H~~~~ 72 (80)
...|+.|-..|.|..|..|.++|.... -....|..|.. .+.|++|..|++.|....
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~---------~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~ 191 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHIDPD---------SFAGNCDQYSGATYGFCPLGASCKFSHTLKR 191 (285)
T ss_pred CCCcccccccceeccCCCCCccccCcc---------cccccccccCcccccccCCCCcccccccccc
Confidence 568999988899999999999997622 12356775543 799999999999999873
No 25
>KOG2185|consensus
Probab=96.06 E-value=0.0025 Score=48.04 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=22.5
Q ss_pred ccccccccccccCCCCCCCcccCCCCC
Q psy15067 46 TKLCQSYHQDGFCPYVYFFKIFHPIPY 72 (80)
Q Consensus 46 t~~C~~f~~~G~C~~G~~C~f~H~~~~ 72 (80)
..+|+ |+..|.|+|+..|||.|+..-
T Consensus 140 MkpC~-ffLeg~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 140 MKPCK-FFLEGRCRFGENCRFSHGLDV 165 (486)
T ss_pred hccch-HhhccccccCcccccccCccc
Confidence 47899 778999999999999999653
No 26
>KOG1813|consensus
Probab=95.40 E-value=0.0044 Score=44.91 Aligned_cols=28 Identities=36% Similarity=0.704 Sum_probs=25.9
Q ss_pred CCCCccccCCCCCCCCCCCccccccccc
Q psy15067 8 APRPPDHDETGVCKFGTGCKFAHGAHEL 35 (80)
Q Consensus 8 ~~lC~~f~~~g~C~~G~~C~faH~~~e~ 35 (80)
..+|+.|-.+|.|-|||+|.|.|+...+
T Consensus 186 pDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 186 PDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred chhhhhhHhhCcccccchhhhhhhhhhc
Confidence 5789999999999999999999999876
No 27
>KOG1813|consensus
Probab=94.74 E-value=0.0092 Score=43.30 Aligned_cols=29 Identities=28% Similarity=0.721 Sum_probs=25.5
Q ss_pred cccccccccccccCCCCCCCcccCCCCCC
Q psy15067 45 RTKLCQSYHQDGFCPYVYFFKIFHPIPYY 73 (80)
Q Consensus 45 kt~~C~~f~~~G~C~~G~~C~f~H~~~~~ 73 (80)
...+|+.|..+|+|-||.+|.|+|+....
T Consensus 185 qpDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 185 QPDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred CchhhhhhHhhCcccccchhhhhhhhhhc
Confidence 34679999999999999999999997754
No 28
>KOG2494|consensus
Probab=94.67 E-value=0.013 Score=43.02 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=26.3
Q ss_pred cccccccccccCCCCCC-CcccCCCCCCCCCCCC
Q psy15067 47 KLCQSYHQDGFCPYVYF-FKIFHPIPYYTTEAGT 79 (80)
Q Consensus 47 ~~C~~f~~~G~C~~G~~-C~f~H~~~~~~~~~~~ 79 (80)
.+|+.|. .|.|.+|++ |+|+|.+......-|+
T Consensus 38 eVCReF~-rn~C~R~d~~CkfaHP~~~~~V~~g~ 70 (331)
T KOG2494|consen 38 EVCREFL-RNTCSRGDRECKFAHPPKNCQVSNGR 70 (331)
T ss_pred HHHHHHH-hccccCCCccccccCCCCCCCccCCe
Confidence 7899775 789999999 9999998876555554
No 29
>KOG1039|consensus
Probab=93.56 E-value=0.028 Score=41.53 Aligned_cols=24 Identities=29% Similarity=0.816 Sum_probs=20.6
Q ss_pred cccccccccccCCCCCCCcccCCCC
Q psy15067 47 KLCQSYHQDGFCPYVYFFKIFHPIP 71 (80)
Q Consensus 47 ~~C~~f~~~G~C~~G~~C~f~H~~~ 71 (80)
.+|+ |+..|+|.+|..|||.|+.+
T Consensus 9 tic~-~~~~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICK-YYQKGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhh-hcccccccccceeeeeccCc
Confidence 6888 66788999999999999877
No 30
>KOG1039|consensus
Probab=92.93 E-value=0.036 Score=40.90 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=22.0
Q ss_pred CCCccccCCCCCCCCCCCccccccc
Q psy15067 9 PRPPDHDETGVCKFGTGCKFAHGAH 33 (80)
Q Consensus 9 ~lC~~f~~~g~C~~G~~C~faH~~~ 33 (80)
.+|++|. .|.|+||+.|+|.|+..
T Consensus 9 tic~~~~-~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQ-KGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhcc-cccccccceeeeeccCc
Confidence 7899887 69999999999999888
No 31
>KOG4791|consensus
Probab=90.47 E-value=0.078 Score=41.15 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=37.5
Q ss_pred CCCccccCCCCCCCCCCCccccccccccccC-----------------CCC----Ccccccccccccccc-CCCCCCCcc
Q psy15067 9 PRPPDHDETGVCKFGTGCKFAHGAHELRVIP-----------------RHP----RYRTKLCQSYHQDGF-CPYVYFFKI 66 (80)
Q Consensus 9 ~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~-----------------~~p----~~kt~~C~~f~~~G~-C~~G~~C~f 66 (80)
..|-.|+ ..+|+++|.|-|.|....+.... +|. .....+|- |...+. |. .++|-|
T Consensus 4 ~dcyff~-ys~cKk~d~c~~rh~E~al~n~t~C~~w~~~~~C~k~C~YRHSe~~~kr~e~~CY-we~~p~gC~-k~~Cgf 80 (667)
T KOG4791|consen 4 EDCYFFF-YSTCKKGDSCPFRHCEAALGNETVCTLWQEGRCCRKVCRYRHSEIDKKRSEIPCY-WENQPTGCQ-KLNCGF 80 (667)
T ss_pred ccchhhh-hhhhhccCcCcchhhHHHhcCcchhhhhhhcCcccccccchhhHHhhhcCcccce-eecCCCccC-CCcccc
Confidence 4565454 56688888888888765543210 111 12346786 666666 86 789999
Q ss_pred cCCCCC
Q psy15067 67 FHPIPY 72 (80)
Q Consensus 67 ~H~~~~ 72 (80)
-|..+.
T Consensus 81 RH~~pP 86 (667)
T KOG4791|consen 81 RHNRPP 86 (667)
T ss_pred ccCCCc
Confidence 996533
No 32
>KOG1763|consensus
Probab=89.09 E-value=0.081 Score=38.66 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=25.1
Q ss_pred ccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067 44 YRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT 74 (80)
Q Consensus 44 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~ 74 (80)
.++.+|- |+..|.|.-|..|.|+|+....+
T Consensus 90 PKSvvCa-fFk~g~C~KG~kCKFsHdl~~~~ 119 (343)
T KOG1763|consen 90 PKSVVCA-FFKQGTCTKGDKCKFSHDLAVER 119 (343)
T ss_pred chHHHHH-HHhccCCCCCCcccccchHHHhh
Confidence 4678998 66789999999999999976543
No 33
>KOG4791|consensus
Probab=87.15 E-value=0.39 Score=37.45 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=18.9
Q ss_pred CCCCccccCCCCCCCCCCCcccccccccc
Q psy15067 8 APRPPDHDETGVCKFGTGCKFAHGAHELR 36 (80)
Q Consensus 8 ~~lC~~f~~~g~C~~G~~C~faH~~~e~~ 36 (80)
...|++|+..-.|+. -|.|-|+.-.++
T Consensus 32 ~t~C~~w~~~~~C~k--~C~YRHSe~~~k 58 (667)
T KOG4791|consen 32 ETVCTLWQEGRCCRK--VCRYRHSEIDKK 58 (667)
T ss_pred cchhhhhhhcCcccc--cccchhhHHhhh
Confidence 456888876666765 788888765554
No 34
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=83.88 E-value=0.87 Score=21.01 Aligned_cols=20 Identities=35% Similarity=0.637 Sum_probs=8.4
Q ss_pred CCccccCCCCCCCCCCCcccc
Q psy15067 10 RPPDHDETGVCKFGTGCKFAH 30 (80)
Q Consensus 10 lC~~f~~~g~C~~G~~C~faH 30 (80)
+|++-...|.|.- +.|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 4444333334443 2454444
No 35
>KOG2333|consensus
Probab=76.69 E-value=1.5 Score=34.35 Aligned_cols=25 Identities=28% Similarity=0.728 Sum_probs=21.6
Q ss_pred CCCCCCccccCCCCCCCCCCCcccc
Q psy15067 6 ILAPRPPDHDETGVCKFGTGCKFAH 30 (80)
Q Consensus 6 ~~~~lC~~f~~~g~C~~G~~C~faH 30 (80)
-+..-|+-|...|.|+||-+|+|+-
T Consensus 112 Dig~~Cp~f~s~G~Cp~G~~CRFl~ 136 (614)
T KOG2333|consen 112 DIGPSCPVFESLGFCPYGFKCRFLG 136 (614)
T ss_pred ccCCccceeeccccCCccceeehhh
Confidence 3467899999889999999999964
No 36
>KOG2202|consensus
Probab=68.66 E-value=2.6 Score=30.19 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=20.1
Q ss_pred CCCCccccCCCCCCCCCCCccccccc
Q psy15067 8 APRPPDHDETGVCKFGTGCKFAHGAH 33 (80)
Q Consensus 8 ~~lC~~f~~~g~C~~G~~C~faH~~~ 33 (80)
...|..|.. +.|.+|..|.|.|-..
T Consensus 152 ea~C~~~e~-~~C~rG~~CnFmH~k~ 176 (260)
T KOG2202|consen 152 EAICGQFER-TECSRGGACNFMHVKR 176 (260)
T ss_pred hhhhccccc-ccCCCCCcCcchhhhh
Confidence 457887764 5899999999999653
No 37
>KOG2202|consensus
Probab=67.20 E-value=2.5 Score=30.26 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=21.7
Q ss_pred CCCccccCCCCCCCCCCCccccccccc
Q psy15067 9 PRPPDHDETGVCKFGTGCKFAHGAHEL 35 (80)
Q Consensus 9 ~lC~~f~~~g~C~~G~~C~faH~~~e~ 35 (80)
.-|+.+.+.|.|+.|+.|.=.|..++.
T Consensus 16 v~c~fy~k~gacR~gdrcsR~h~kpt~ 42 (260)
T KOG2202|consen 16 VNCSFYFKIGACRHGDRCSRLHEKPTF 42 (260)
T ss_pred cccchHHhhcccccccHHHHhhccccc
Confidence 458888889999999999777766553
No 38
>KOG3702|consensus
Probab=61.43 E-value=9.8 Score=30.68 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=15.9
Q ss_pred CCCCCccccCCCCCCCCCCCcccccccc
Q psy15067 7 LAPRPPDHDETGVCKFGTGCKFAHGAHE 34 (80)
Q Consensus 7 ~~~lC~~f~~~g~C~~G~~C~faH~~~e 34 (80)
.-++|.+|.. |. ++.|.|+|....
T Consensus 543 ~l~~Cky~~~---Ct-~a~Ce~~HPtaa 566 (681)
T KOG3702|consen 543 ILTRCKYGPA---CT-SAECEFAHPTAA 566 (681)
T ss_pred eeccccCCCc---CC-chhhhhcCCcch
Confidence 3456766653 55 677888887665
No 39
>KOG3702|consensus
Probab=60.27 E-value=11 Score=30.44 Aligned_cols=17 Identities=35% Similarity=0.958 Sum_probs=12.0
Q ss_pred CCCCCCCC-----Ccccccccc
Q psy15067 18 GVCKFGTG-----CKFAHGAHE 34 (80)
Q Consensus 18 g~C~~G~~-----C~faH~~~e 34 (80)
-.|++|.. |.|+|....
T Consensus 586 p~Ck~~~kCtasDC~~sH~~~~ 607 (681)
T KOG3702|consen 586 PGCKFGKKCTASDCNYSHAGRR 607 (681)
T ss_pred cccccccccccccCcccccCCC
Confidence 34888754 889997665
No 40
>KOG0153|consensus
Probab=54.74 E-value=8.5 Score=28.89 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=22.5
Q ss_pred CCCCCCccccCCCCCCCCCCCccccccc
Q psy15067 6 ILAPRPPDHDETGVCKFGTGCKFAHGAH 33 (80)
Q Consensus 6 ~~~~lC~~f~~~g~C~~G~~C~faH~~~ 33 (80)
....+|..|. .|.|+.|+.|-|.|...
T Consensus 159 n~p~Icsf~v-~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 159 NRPHICSFFV-KGECKRGAECPYRHEKP 185 (377)
T ss_pred CCCcccccee-eccccccccccccccCC
Confidence 3467898887 57999999999999766
No 41
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=54.55 E-value=2.5 Score=30.29 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=23.1
Q ss_pred ccccccccccccccCCCCCCCcccCCCCC
Q psy15067 44 YRTKLCQSYHQDGFCPYVYFFKIFHPIPY 72 (80)
Q Consensus 44 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~~ 72 (80)
.++.+|-.|. .+.|.-|..|.|+|+.++
T Consensus 83 pK~~vcalF~-~~~c~kg~~ckF~h~~ee 110 (299)
T COG5252 83 PKTVVCALFL-NKTCAKGDACKFAHGKEE 110 (299)
T ss_pred chhHHHHHhc-cCccccCchhhhhcchHH
Confidence 4678999665 678999999999999554
No 42
>PF10283 zf-CCHH: Zinc-finger (CX5CX6HX5H) motif; InterPro: IPR019406 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type Znf motif that in humans is part of the APLF (aprataxin- and PNK-like) forkead association domain-containing protein []. The Znf is highly conserved both in primary sequence and in the spacing between the putative zinc coordinating residues, and is configured CX5CX6HX5H. Many of the proteins containing this Znf are involved in DNA strand break repair and/or contain domains implicated in DNA metabolism. This Znf motif appears to be specialised for the non-covalent binding of poly ADP-ribose; Aprataxin also appears to covalently bind poly ADP-ribose, but not through its Znf motif [].; PDB: 2KQC_A 2KUO_A 2KQE_A 2KQD_A 2KQB_A.
Probab=53.58 E-value=3.5 Score=19.48 Aligned_cols=7 Identities=57% Similarity=1.777 Sum_probs=3.4
Q ss_pred CCCCCCC
Q psy15067 20 CKFGTGC 26 (80)
Q Consensus 20 C~~G~~C 26 (80)
|+||.+|
T Consensus 3 C~YG~~C 9 (26)
T PF10283_consen 3 CKYGAKC 9 (26)
T ss_dssp -TTGGG-
T ss_pred CCcchhh
Confidence 6666666
No 43
>PF06373 CART: Cocaine and amphetamine regulated transcript protein (CART); InterPro: IPR009106 The cocaine and amphetamine regulated transcript (CART) is a brain-localised peptide that acts as a satiety factor in appetite regulation. CART was found to inhibit both normal and starvation-induced feeding, and completely blocks the feeding response induced by neuropeptide Y. CART is regulated by leptin in the hypothalamus, and can be transcriptionally induced after cocaine or amphetamine administration []. Posttranslational processing of CART produces an N-terminal CART peptide and a C-terminal CART peptide. The C-terminal CART peptide has been isolated from the hypothalamus, nucleus accumbens, and the anterior pituitary lobe in rats. C-terminal CART is the biologically active part of the molecule affecting food intake. The structure of C-terminal CART consists of a disulphide-bound fold containing a beta-hairpin and two adjacent disulphide bridges [].; GO: 0000186 activation of MAPKK activity, 0001678 cellular glucose homeostasis, 0007186 G-protein coupled receptor protein signaling pathway, 0008343 adult feeding behavior, 0009267 cellular response to starvation, 0032099 negative regulation of appetite, 0005615 extracellular space; PDB: 1HY9_A.
Probab=51.07 E-value=8 Score=22.57 Aligned_cols=30 Identities=30% Similarity=0.686 Sum_probs=13.5
Q ss_pred CCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcc
Q psy15067 19 VCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKI 66 (80)
Q Consensus 19 ~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f 66 (80)
.|..|+.|..-|+.. ..++|- |+.|..|.|
T Consensus 38 ~Cd~GE~CAvrkG~R-----------IGklCd-------C~rG~~CN~ 67 (73)
T PF06373_consen 38 SCDVGEQCAVRKGPR-----------IGKLCD-------CPRGTSCNF 67 (73)
T ss_dssp B--SSS-SEEE-SSS-----------EEE--B---------TT--B-T
T ss_pred CCCCCchhhhccccc-----------cccccC-------CCCCCchhh
Confidence 599999998888732 356776 888888865
No 44
>KOG0153|consensus
Probab=45.24 E-value=12 Score=28.16 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=21.7
Q ss_pred cccccccccccCCCCCCCcccCCCCC
Q psy15067 47 KLCQSYHQDGFCPYVYFFKIFHPIPY 72 (80)
Q Consensus 47 ~~C~~f~~~G~C~~G~~C~f~H~~~~ 72 (80)
.+|. |+..|.|++|..|.|.|..+.
T Consensus 162 ~Ics-f~v~geckRG~ec~yrhEkp~ 186 (377)
T KOG0153|consen 162 HICS-FFVKGECKRGAECPYRHEKPP 186 (377)
T ss_pred cccc-ceeeccccccccccccccCCC
Confidence 5698 777889999999999999873
No 45
>KOG3777|consensus
Probab=28.23 E-value=47 Score=25.66 Aligned_cols=23 Identities=30% Similarity=0.558 Sum_probs=16.1
Q ss_pred cccccccccccCCCCCCCcccCCCCC
Q psy15067 47 KLCQSYHQDGFCPYVYFFKIFHPIPY 72 (80)
Q Consensus 47 ~~C~~f~~~G~C~~G~~C~f~H~~~~ 72 (80)
.+|. |-. .|+||..|.|.|....
T Consensus 172 q~Cp-ygk--kctyg~kck~~h~~~~ 194 (443)
T KOG3777|consen 172 QPCP-YGK--KCTYGGKCKFYHPEIA 194 (443)
T ss_pred cCCC-ccc--ccCCCCceeecccccc
Confidence 5577 332 4888888888888665
No 46
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=26.98 E-value=26 Score=22.63 Aligned_cols=15 Identities=33% Similarity=0.897 Sum_probs=12.4
Q ss_pred CCCCCCCCcccccccc
Q psy15067 19 VCKFGTGCKFAHGAHE 34 (80)
Q Consensus 19 ~C~~G~~C~faH~~~e 34 (80)
.|++|+ |+|.++-..
T Consensus 61 GC~~ge-CHy~~GN~k 75 (132)
T COG1908 61 GCKIGE-CHYISGNYK 75 (132)
T ss_pred cccccc-eeeeccchH
Confidence 599997 999998553
No 47
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=23.40 E-value=33 Score=26.08 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=21.2
Q ss_pred ccccccccccccCCCCCCCcccCCCCCC
Q psy15067 46 TKLCQSYHQDGFCPYVYFFKIFHPIPYY 73 (80)
Q Consensus 46 t~~C~~f~~~G~C~~G~~C~f~H~~~~~ 73 (80)
|+-|..|.+...|| .+.|.|+|.+..+
T Consensus 202 TKYCtsYLRn~~Cp-Np~CMyLHEpg~e 228 (480)
T COG5175 202 TKYCTSYLRNAVCP-NPDCMYLHEPGPE 228 (480)
T ss_pred hHHHHHHHcCCCCC-CCCeeeecCCCcc
Confidence 35588888888899 5689999987654
No 48
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=21.26 E-value=52 Score=15.43 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=5.2
Q ss_pred cccCCCCCCCc
Q psy15067 55 DGFCPYVYFFK 65 (80)
Q Consensus 55 ~G~C~~G~~C~ 65 (80)
.|.|+.|+.|.
T Consensus 12 ~~gC~WGQ~~~ 22 (27)
T PF08098_consen 12 TGGCPWGQNCY 22 (27)
T ss_dssp TTT-SSS-SS-
T ss_pred ecCCccccccc
Confidence 34588777764
No 49
>KOG2135|consensus
Probab=20.19 E-value=30 Score=27.10 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=24.4
Q ss_pred CCCCccccCCCCCCCCCCCccccccccc
Q psy15067 8 APRPPDHDETGVCKFGTGCKFAHGAHEL 35 (80)
Q Consensus 8 ~~lC~~f~~~g~C~~G~~C~faH~~~e~ 35 (80)
...|..|...|.|..|+.|.+.|+...+
T Consensus 212 ~~r~k~fee~g~~~r~el~p~~hg~~~v 239 (526)
T KOG2135|consen 212 ENRRKFFEEFGVLERGELCPTHHGCVPV 239 (526)
T ss_pred HHhhhhhHhhceeeecccccccccccee
Confidence 5678899999999999999999987654
Done!