Query psy15067
Match_columns 80
No_of_seqs 103 out of 971
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 19:35:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.9 4.6E-24 1.6E-28 124.3 3.6 70 3-72 7-76 (77)
2 2cqe_A KIAA1064 protein; CCCH 99.6 1.4E-15 4.7E-20 92.7 3.9 53 5-72 10-62 (98)
3 2d9n_A Cleavage and polyadenyl 99.6 1.7E-15 5.9E-20 88.5 3.5 61 4-75 6-66 (77)
4 2rhk_C Cleavage and polyadenyl 99.5 1.4E-14 4.8E-19 83.8 1.6 59 5-74 13-71 (72)
5 3d2q_A Muscleblind-like protei 99.3 1.5E-13 5E-18 79.0 -0.2 63 7-74 5-68 (70)
6 2e5s_A Otthump00000018578; ZF- 99.1 3.6E-12 1.2E-16 77.6 -0.1 62 6-72 18-80 (98)
7 3d2n_A Muscleblind-like protei 99.0 1.9E-10 6.6E-15 68.1 2.8 60 6-72 7-67 (83)
8 2d9m_A Zinc finger CCCH-type d 98.9 5.8E-11 2E-15 68.2 -0.9 30 7-37 19-48 (69)
9 2rpp_A Muscleblind-like protei 98.8 1.7E-09 5.8E-14 64.8 2.1 58 8-72 17-75 (89)
10 1m9o_A Tristetraproline; Cys3H 98.6 2.2E-08 7.4E-13 57.5 2.8 34 41-74 7-40 (77)
11 2d9m_A Zinc finger CCCH-type d 98.5 6.5E-09 2.2E-13 59.6 -1.3 32 42-74 16-47 (69)
12 2fc6_A Nuclear, target of EGR1 98.1 8.2E-07 2.8E-11 47.7 1.2 31 44-74 18-48 (50)
13 2cqe_A KIAA1064 protein; CCCH 98.0 3.5E-06 1.2E-10 50.8 2.6 25 44-69 11-35 (98)
14 2d9n_A Cleavage and polyadenyl 97.9 8.2E-06 2.8E-10 47.0 2.7 32 43-75 7-38 (77)
15 2rhk_C Cleavage and polyadenyl 97.7 1.2E-05 4E-10 46.0 1.4 32 44-76 14-45 (72)
16 2fc6_A Nuclear, target of EGR1 97.7 7.8E-06 2.7E-10 43.9 0.3 28 6-33 18-45 (50)
17 3d2q_A Muscleblind-like protei 97.1 0.00015 5.2E-09 40.9 1.4 27 45-72 5-32 (70)
18 3d2n_A Muscleblind-like protei 96.9 0.00033 1.1E-08 41.0 1.8 27 45-72 8-35 (83)
19 3u9g_A Zinc finger CCCH-type a 96.8 0.00058 2E-08 46.8 2.6 25 9-34 90-118 (229)
20 2rpp_A Muscleblind-like protei 96.8 0.00052 1.8E-08 40.7 1.7 28 45-73 16-44 (89)
21 3u9g_A Zinc finger CCCH-type a 96.7 0.0012 4.2E-08 45.1 3.4 47 6-72 149-199 (229)
22 2e5s_A Otthump00000018578; ZF- 96.6 0.00024 8.3E-09 42.7 -0.8 28 44-72 18-46 (98)
23 2lhn_A Nuclear polyadenylated 95.2 0.00073 2.5E-08 39.4 0.0 28 2-33 3-30 (80)
24 3u1l_A PRE-mRNA-splicing facto 94.4 0.0069 2.4E-07 41.4 -0.0 27 7-34 69-95 (240)
25 3u1l_A PRE-mRNA-splicing facto 93.8 0.012 4.2E-07 40.1 0.2 25 47-72 71-95 (240)
26 3v33_A Ribonuclease ZC3H12A; r 87.6 0.13 4.4E-06 35.0 0.4 27 45-74 191-217 (223)
27 3v33_A Ribonuclease ZC3H12A; r 68.4 1 3.6E-05 30.5 0.0 25 6-33 190-214 (223)
28 1hy9_A Cocaine and amphetamine 61.1 6.2 0.00021 19.8 2.1 31 19-67 6-36 (41)
29 1ans_A Neurotoxin III; NMR {An 35.3 21 0.00071 16.1 1.4 9 18-26 9-17 (27)
30 3e50_C Protransforming growth 29.1 15 0.00052 18.9 0.5 22 9-32 6-27 (50)
31 3c9a_A Protein giant-lens; arg 21.9 8.9 0.00031 25.8 -1.6 18 57-74 179-196 (223)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.89 E-value=4.6e-24 Score=124.28 Aligned_cols=70 Identities=34% Similarity=0.703 Sum_probs=33.6
Q ss_pred CcCCCCCCCccccCCCCCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCC
Q psy15067 3 QGEILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPY 72 (80)
Q Consensus 3 ~~~~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~ 72 (80)
+-.+++++|++|+..|.|++|++|+|+|+..|++....+|.+++.+|+.|.+.|.|++|.+|+|+|+.++
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC---------------------------------
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 3468999999998889999999999999999999766677889999999999999999999999999875
No 2
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.57 E-value=1.4e-15 Score=92.71 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=47.1
Q ss_pred CCCCCCCccccCCCCCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCC
Q psy15067 5 EILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPY 72 (80)
Q Consensus 5 ~~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~ 72 (80)
..++.+|++|+ .|.|++|++|+|+|+ +.+|+.|.+.|.|++|.+|+|+|+...
T Consensus 10 ~~k~~lC~~f~-~G~C~~G~~C~f~H~--------------~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 10 PKKRELCKFYI-TGFCARAENCPYMHG--------------DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp SCCCSBCTTTT-TTCCSCSTTCSSBSS--------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCCCccCcccc-cCcCCCCCCCCCCCC--------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 36899999996 799999999999998 358998878999999999999999653
No 3
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-15 Score=88.48 Aligned_cols=61 Identities=21% Similarity=0.265 Sum_probs=50.7
Q ss_pred cCCCCCCCccccCCCCCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCCCCC
Q psy15067 4 GEILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTT 75 (80)
Q Consensus 4 ~~~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~~ 75 (80)
...++.+|++|+. |.|++|++|.|+|+.... ++.+|++|...|.|. |++|+|.|..+...+
T Consensus 6 ~~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~---------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~~ 66 (77)
T 2d9n_A 6 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT---------KMPECYFYSKFGECS-NKECPFLHIDPESKI 66 (77)
T ss_dssp SCCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT---------TSCBCHHHHHTCCCC-CSSCSSBCCCTTSSC
T ss_pred CCCcceeCHhHcc-CcCCCCCCCCCccccccC---------cCCCCcccCCCCccC-CCCeeccCCCccccC
Confidence 4568999999985 999999999999997642 256899776669999 999999999876544
No 4
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.45 E-value=1.4e-14 Score=83.84 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=47.7
Q ss_pred CCCCCCCccccCCCCCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067 5 EILAPRPPDHDETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT 74 (80)
Q Consensus 5 ~~~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~ 74 (80)
..++.+|++|+. |.|++|++|.|+|+.... ++.+|++|...|.|.+ ++|+|.|..+..+
T Consensus 13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~---------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~k 71 (72)
T 2rhk_C 13 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT---------KMSECYFYSKFGECSN-KECPFLHIDPESK 71 (72)
T ss_dssp CCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT---------SCCBCHHHHHHSCCSB-TTCCSBCCCCC--
T ss_pred CCcCeeCHHHhc-CCCCCCCCCCCccccccc---------cCCcccccCCCCCCCC-CCeeccCCCcccc
Confidence 356889999985 999999999999986532 3578996665599999 9999999987653
No 5
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.31 E-value=1.5e-13 Score=78.97 Aligned_cols=63 Identities=25% Similarity=0.430 Sum_probs=49.3
Q ss_pred CCCCCccccCCCCCCCCC-CCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067 7 LAPRPPDHDETGVCKFGT-GCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT 74 (80)
Q Consensus 7 ~~~lC~~f~~~g~C~~G~-~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~ 74 (80)
+.++|+.|. .|.|..|+ .|+|+|+.++..... ...++.+|..|. .|.|.+| .|+|+|+.+.++
T Consensus 5 k~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~~~--~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 5 RLEVCREYQ-RGNCNRGENDCRFAHPADSTMIDT--NDNTVTVCMDYI-KGRCSRE-KCKYFHPPAHLQ 68 (70)
T ss_dssp EEEBCHHHH-TTCCSSCTTTCSSBCCCTTSCCBT--TTTEEEBCHHHH-TTCCCCT-TCCSBCCCHHHH
T ss_pred cchhCHHHh-cCCCCCCCCCCCCccCcccccccc--cCCcceeccccC-cCCCCCC-CcCeeCCHHHHh
Confidence 456899996 69999999 599999987654311 235678999654 6999999 999999987544
No 6
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.6e-12 Score=77.57 Aligned_cols=62 Identities=26% Similarity=0.419 Sum_probs=48.7
Q ss_pred CCCCCCccccCCCCCCCCC-CCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCC
Q psy15067 6 ILAPRPPDHDETGVCKFGT-GCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPY 72 (80)
Q Consensus 6 ~~~~lC~~f~~~g~C~~G~-~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~ 72 (80)
.+.++|++|+. |.|..|| .|+|+|+..+..... ...++.+|.+| ..|.|.++ .|+|.|+...
T Consensus 18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~~--~~~~~~vC~~f-lkG~C~r~-~C~y~H~~~~ 80 (98)
T 2e5s_A 18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMIDT--SDNTVTVCMDY-IKGRCMRE-KCKYFHPPAH 80 (98)
T ss_dssp SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCCT--TTCEEEBCHHH-HHTCCCCT-TCCSBCCCHH
T ss_pred hhhhhhHHHhc-CcCCCCCCCCCCcCCchhccccc--cCCccccchhh-ccCCCCCC-CcCccCChHH
Confidence 34579999985 9999999 799999987664311 23467899944 67999999 9999999754
No 7
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.99 E-value=1.9e-10 Score=68.06 Aligned_cols=60 Identities=27% Similarity=0.413 Sum_probs=47.2
Q ss_pred CCCCCCccccCCCCCCCCC-CCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCC
Q psy15067 6 ILAPRPPDHDETGVCKFGT-GCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPY 72 (80)
Q Consensus 6 ~~~~lC~~f~~~g~C~~G~-~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~ 72 (80)
.+.++|+.|.. |.|..|| .|+|+|....+... ..+..+|..| ..|.|.++ .|+|.|++..
T Consensus 7 ~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~----~~~~~vC~df-lkG~C~r~-~C~y~H~~~~ 67 (83)
T 3d2n_A 7 LTLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE----NGRVIACFDS-LKGRCSRE-NCKYLHPPPH 67 (83)
T ss_dssp GEEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE----TTEEECCHHH-HTTCCCCS-SCSSCCCCHH
T ss_pred ccchhcHHHhc-CCCCCCCCCCCCcCCCcccccc----CCceeehhHh-hhccccCC-CcceeCChHH
Confidence 34678999986 9999997 99999997754321 1346789966 57999998 9999998754
No 8
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=5.8e-11 Score=68.16 Aligned_cols=30 Identities=37% Similarity=0.566 Sum_probs=27.3
Q ss_pred CCCCCccccCCCCCCCCCCCccccccccccc
Q psy15067 7 LAPRPPDHDETGVCKFGTGCKFAHGAHELRV 37 (80)
Q Consensus 7 ~~~lC~~f~~~g~C~~G~~C~faH~~~e~~~ 37 (80)
+.+||++| ..|.|+||++|+|||+.+||+.
T Consensus 19 k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 19 YFSICDRY-MNGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSBCHHH-HHSCCSSCSSCSSBSSHHHHHH
T ss_pred CcccCccc-CcCCCCCCCccCCcCCHHHHhh
Confidence 56999999 4789999999999999999985
No 9
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.80 E-value=1.7e-09 Score=64.77 Aligned_cols=58 Identities=26% Similarity=0.372 Sum_probs=46.3
Q ss_pred CCCCccccCCCCCCCCC-CCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCC
Q psy15067 8 APRPPDHDETGVCKFGT-GCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPY 72 (80)
Q Consensus 8 ~~lC~~f~~~g~C~~G~-~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~ 72 (80)
.++|+.|.. |.|..|| .|+|+|........ ..+..+|..| ..|.|.++ .|+|.|.+..
T Consensus 17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~----~~~~~vC~df-lkG~C~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE----NGRVIACFDS-LKGRCSRE-NCKYLHPPTH 75 (89)
T ss_dssp ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB----TTBEEBCHHH-HHTCCCCT-TCCSBCCCHH
T ss_pred hhhchHHhc-CCCCCCCCCCCCcCCCcccccc----CCceeeehhh-hhCcCCCC-CcceecCHHH
Confidence 679999985 9999998 99999987754321 1346789966 58999988 9999999754
No 10
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.61 E-value=2.2e-08 Score=57.45 Aligned_cols=34 Identities=29% Similarity=0.613 Sum_probs=30.3
Q ss_pred CCCccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067 41 HPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT 74 (80)
Q Consensus 41 ~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~ 74 (80)
++.+++.+|+.|...|.|++|++|+|+|+.++++
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~ 40 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR 40 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhc
Confidence 3578999999887899999999999999998765
No 11
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=6.5e-09 Score=59.58 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=27.1
Q ss_pred CCccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067 42 PRYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT 74 (80)
Q Consensus 42 p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~ 74 (80)
|..++.+|+.| ..|.|+||.+|.|+|+.++++
T Consensus 16 P~~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr 47 (69)
T 2d9m_A 16 PTGYFSICDRY-MNGTCPEGNSCKFAHGNAELH 47 (69)
T ss_dssp CCSCCSBCHHH-HHSCCSSCSSCSSBSSHHHHH
T ss_pred CCCCcccCccc-CcCCCCCCCccCCcCCHHHHh
Confidence 44567999988 789999999999999987654
No 12
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=98.10 E-value=8.2e-07 Score=47.69 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=27.5
Q ss_pred ccccccccccccccCCCCCCCcccCCCCCCC
Q psy15067 44 YRTKLCQSYHQDGFCPYVYFFKIFHPIPYYT 74 (80)
Q Consensus 44 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~ 74 (80)
..+.+|..|.+.|+||+|..|.+.|+++...
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~~ 48 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISGPS 48 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCCCC
Confidence 3578999999999999999999999998643
No 13
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.98 E-value=3.5e-06 Score=50.83 Aligned_cols=25 Identities=28% Similarity=0.580 Sum_probs=22.4
Q ss_pred ccccccccccccccCCCCCCCcccCC
Q psy15067 44 YRTKLCQSYHQDGFCPYVYFFKIFHP 69 (80)
Q Consensus 44 ~kt~~C~~f~~~G~C~~G~~C~f~H~ 69 (80)
.++.+|+.| ..|.|.+|+.|+|+|+
T Consensus 11 ~k~~lC~~f-~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 11 KKRELCKFY-ITGFCARAENCPYMHG 35 (98)
T ss_dssp CCCSBCTTT-TTTCCSCSTTCSSBSS
T ss_pred CCCccCccc-ccCcCCCCCCCCCCCC
Confidence 478999966 6899999999999998
No 14
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=8.2e-06 Score=47.00 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=26.0
Q ss_pred CccccccccccccccCCCCCCCcccCCCCCCCC
Q psy15067 43 RYRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTT 75 (80)
Q Consensus 43 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~~ 75 (80)
..++.+|+.|. .|.|.+|+.|+|+|+....++
T Consensus 7 ~~k~~~C~~fl-~G~C~~G~~C~fsH~~~~~~~ 38 (77)
T 2d9n_A 7 GEKTVVCKHWL-RGLCKKGDQCEFLHEYDMTKM 38 (77)
T ss_dssp CCTTSBCHHHH-TTCCSCTTSSSSBCSCCTTTS
T ss_pred CCcceeCHhHc-cCcCCCCCCCCCccccccCcC
Confidence 45789999555 599999999999999876543
No 15
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.69 E-value=1.2e-05 Score=46.01 Aligned_cols=32 Identities=16% Similarity=0.328 Sum_probs=25.4
Q ss_pred ccccccccccccccCCCCCCCcccCCCCCCCCC
Q psy15067 44 YRTKLCQSYHQDGFCPYVYFFKIFHPIPYYTTE 76 (80)
Q Consensus 44 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~ 76 (80)
.++.+|+.| ..|.|.+|+.|+|+|+....+++
T Consensus 14 ~k~~vCk~f-l~G~C~~G~~C~fsH~~~~~~~~ 45 (72)
T 2rhk_C 14 EKTVVCKHW-LRGLCKKGDQCEFLHEYDMTKMS 45 (72)
T ss_dssp CCCSBCHHH-HTTCCCCGGGSSSBCSCCTTSCC
T ss_pred CcCeeCHHH-hcCCCCCCCCCCCccccccccCC
Confidence 467899955 55999999999999998765443
No 16
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=97.66 E-value=7.8e-06 Score=43.85 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=25.9
Q ss_pred CCCCCCccccCCCCCCCCCCCccccccc
Q psy15067 6 ILAPRPPDHDETGVCKFGTGCKFAHGAH 33 (80)
Q Consensus 6 ~~~~lC~~f~~~g~C~~G~~C~faH~~~ 33 (80)
..+.+|..|...|.|+.|.+|.++|++.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 5789999999999999999999999976
No 17
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=97.12 E-value=0.00015 Score=40.89 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=22.8
Q ss_pred cccccccccccccCCCCC-CCcccCCCCC
Q psy15067 45 RTKLCQSYHQDGFCPYVY-FFKIFHPIPY 72 (80)
Q Consensus 45 kt~~C~~f~~~G~C~~G~-~C~f~H~~~~ 72 (80)
+..+|+.| +.|.|.+|+ .|+|+|+...
T Consensus 5 k~~vC~~f-~~G~C~rg~~~C~f~H~~~~ 32 (70)
T 3d2q_A 5 RLEVCREY-QRGNCNRGENDCRFAHPADS 32 (70)
T ss_dssp EEEBCHHH-HTTCCSSCTTTCSSBCCCTT
T ss_pred cchhCHHH-hcCCCCCCCCCCCCccCccc
Confidence 45799966 789999999 5999998764
No 18
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=96.95 E-value=0.00033 Score=41.00 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=22.8
Q ss_pred cccccccccccccCCCCC-CCcccCCCCC
Q psy15067 45 RTKLCQSYHQDGFCPYVY-FFKIFHPIPY 72 (80)
Q Consensus 45 kt~~C~~f~~~G~C~~G~-~C~f~H~~~~ 72 (80)
+..+|+.|.+ |.|.+|+ .|+|+|+...
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~ 35 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKS 35 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTT
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCcc
Confidence 4578997765 9999996 9999999864
No 19
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.85 E-value=0.00058 Score=46.78 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=19.0
Q ss_pred CCCccccCCCCCC----CCCCCcccccccc
Q psy15067 9 PRPPDHDETGVCK----FGTGCKFAHGAHE 34 (80)
Q Consensus 9 ~lC~~f~~~g~C~----~G~~C~faH~~~e 34 (80)
-||+.|+. |.|+ .+..|+|+|++..
T Consensus 90 HLCK~~l~-G~C~~~~~~~~~Ck~SHdi~s 118 (229)
T 3u9g_A 90 HLCKLNLL-GRCHYAQSQRNLCKYSHDVLS 118 (229)
T ss_dssp CCCHHHHT-TCCGGGTCCSSCCSSCSCTTC
T ss_pred eechhhhc-CcCCcccCCCCCcccccccCc
Confidence 47888874 8993 3467999998864
No 20
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=96.78 E-value=0.00052 Score=40.70 Aligned_cols=28 Identities=21% Similarity=0.458 Sum_probs=23.5
Q ss_pred cccccccccccccCCCCC-CCcccCCCCCC
Q psy15067 45 RTKLCQSYHQDGFCPYVY-FFKIFHPIPYY 73 (80)
Q Consensus 45 kt~~C~~f~~~G~C~~G~-~C~f~H~~~~~ 73 (80)
+..+|+.|.+ |.|.+|+ .|+|+|+....
T Consensus 16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~ 44 (89)
T 2rpp_A 16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSC 44 (89)
T ss_dssp EECBCHHHHH-TCCCCCTTTSSSBCCCSSS
T ss_pred hhhhchHHhc-CCCCCCCCCCCCcCCCccc
Confidence 4578997765 9999998 99999998753
No 21
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.70 E-value=0.0012 Score=45.14 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=39.5
Q ss_pred CCCCCCccccCC----CCCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCcccCCCCC
Q psy15067 6 ILAPRPPDHDET----GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPIPY 72 (80)
Q Consensus 6 ~~~~lC~~f~~~----g~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~H~~~~ 72 (80)
.+.++|.+| +. |.|.++++|...| +|+ ++..|.|.+ ..|.-+|+...
T Consensus 149 lLPeiC~~Y-kG~g~~g~C~~~~~C~kLH-----------------IC~-~Fl~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 149 FLPEICKSY-KGEGRKQTCGQPQPCERLH-----------------ICE-HFTRGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp GSCCBCTTC-CCSSSCCSCSSSSCCCSBC-----------------SCH-HHHTTCCCC-SSCSSCCCTTS
T ss_pred cCchHHHHh-CCCCCCCcCCCCCCCccee-----------------ccc-hhhcCCcCC-CCccCccCccC
Confidence 368999999 52 6899999999888 898 567899999 89999999754
No 22
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.56 E-value=0.00024 Score=42.71 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=23.5
Q ss_pred ccccccccccccccCCCCC-CCcccCCCCC
Q psy15067 44 YRTKLCQSYHQDGFCPYVY-FFKIFHPIPY 72 (80)
Q Consensus 44 ~kt~~C~~f~~~G~C~~G~-~C~f~H~~~~ 72 (80)
.+..+|+.|. .|.|.+|+ .|+|+|+...
T Consensus 18 ~k~~VCr~Fl-rG~C~rgd~~C~FsH~~~~ 46 (98)
T 2e5s_A 18 DKLEVCREFQ-RGNCARGETDCRFAHPADS 46 (98)
T ss_dssp SEEEBCSHHH-HTCCSSHHHHCSSBCCSSC
T ss_pred hhhhhhHHHh-cCcCCCCCCCCCCcCCchh
Confidence 4668999665 59999999 7999999865
No 23
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=95.23 E-value=0.00073 Score=39.42 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=20.0
Q ss_pred CCcCCCCCCCccccCCCCCCCCCCCccccccc
Q psy15067 2 LQGEILAPRPPDHDETGVCKFGTGCKFAHGAH 33 (80)
Q Consensus 2 ~~~~~~~~lC~~f~~~g~C~~G~~C~faH~~~ 33 (80)
++-|...++|++|.. |.. +.|.|.|...
T Consensus 3 ~~~~~~~e~CKf~~~---Ctn-~~C~f~Hp~~ 30 (80)
T 2lhn_A 3 LGSEKSLEQCKFGTH---CTN-KRCKYRHARS 30 (80)
Confidence 344667788977652 888 8999999643
No 24
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=94.43 E-value=0.0069 Score=41.37 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=22.4
Q ss_pred CCCCCccccCCCCCCCCCCCcccccccc
Q psy15067 7 LAPRPPDHDETGVCKFGTGCKFAHGAHE 34 (80)
Q Consensus 7 ~~~lC~~f~~~g~C~~G~~C~faH~~~e 34 (80)
...+|.+|.. |.|+.|+.|.|.|....
T Consensus 69 ~~~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 69 QLFFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CCSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred CCeEcCcccc-CCCCCCCCCCccCCCCC
Confidence 3568998975 99999999999997543
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.78 E-value=0.012 Score=40.11 Aligned_cols=25 Identities=24% Similarity=0.483 Sum_probs=21.3
Q ss_pred cccccccccccCCCCCCCcccCCCCC
Q psy15067 47 KLCQSYHQDGFCPYVYFFKIFHPIPY 72 (80)
Q Consensus 47 ~~C~~f~~~G~C~~G~~C~f~H~~~~ 72 (80)
..|. |++.|.|++|..|.|.|..+.
T Consensus 71 ~~C~-ffakG~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 71 FFCL-FFAKGMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp SBCH-HHHTTCCSCGGGCSSBBSCCC
T ss_pred eEcC-ccccCCCCCCCCCCccCCCCC
Confidence 5899 556799999999999998764
No 26
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=87.56 E-value=0.13 Score=34.98 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=0.0
Q ss_pred cccccccccccccCCCCCCCcccCCCCCCC
Q psy15067 45 RTKLCQSYHQDGFCPYVYFFKIFHPIPYYT 74 (80)
Q Consensus 45 kt~~C~~f~~~G~C~~G~~C~f~H~~~~~~ 74 (80)
+..+|+ |-. .|.||.+|+|-|.+....
T Consensus 191 ~~~~~~-~~~--~~~~~~~~~~~~~~~~~~ 217 (223)
T 3v33_A 191 RKQPCP-YGR--KCTYGIKCRFFHPERPSC 217 (223)
T ss_dssp ------------------------------
T ss_pred CCCCCC-CCc--ccccCCcceecCCccCCc
Confidence 446798 433 499999999999987643
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=68.37 E-value=1 Score=30.48 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=0.0
Q ss_pred CCCCCCccccCCCCCCCCCCCccccccc
Q psy15067 6 ILAPRPPDHDETGVCKFGTGCKFAHGAH 33 (80)
Q Consensus 6 ~~~~lC~~f~~~g~C~~G~~C~faH~~~ 33 (80)
.+.++|++= ..|.||.+|+|-|...
T Consensus 190 ~~~~~~~~~---~~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 190 HRKQPCPYG---RKCTYGIKCRFFHPER 214 (223)
T ss_dssp ----------------------------
T ss_pred cCCCCCCCC---cccccCCcceecCCcc
Confidence 356778842 3499999999999754
No 28
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=61.13 E-value=6.2 Score=19.80 Aligned_cols=31 Identities=35% Similarity=0.733 Sum_probs=22.2
Q ss_pred CCCCCCCCccccccccccccCCCCCccccccccccccccCCCCCCCccc
Q psy15067 19 VCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIF 67 (80)
Q Consensus 19 ~C~~G~~C~faH~~~e~~~~~~~p~~kt~~C~~f~~~G~C~~G~~C~f~ 67 (80)
.|.-|+.|.-.++.. ..++|. |+.|..|.|.
T Consensus 6 ~Cd~GeqCAvRkG~R-----------igklC~-------C~rg~~Cn~f 36 (41)
T 1hy9_A 6 MCDAGEQCAVRKGAR-----------IGKLCD-------CPRGTSCNSF 36 (41)
T ss_dssp BCCSSSCSEEECSSS-----------EEECCB-------CCTTCCBCTT
T ss_pred cCCccchhhhhcccc-----------cchhcC-------CCCCCcchhh
Confidence 588888888777622 346776 8888888763
No 29
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=35.28 E-value=21 Score=16.12 Aligned_cols=9 Identities=44% Similarity=1.342 Sum_probs=5.6
Q ss_pred CCCCCCCCC
Q psy15067 18 GVCKFGTGC 26 (80)
Q Consensus 18 g~C~~G~~C 26 (80)
|.|++|.+|
T Consensus 9 ~gCpWGQ~~ 17 (27)
T 1ans_A 9 GGCPWGQNC 17 (27)
T ss_dssp TTCSSSCSS
T ss_pred cCCcccccc
Confidence 557777555
No 30
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=29.11 E-value=15 Score=18.87 Aligned_cols=22 Identities=32% Similarity=0.612 Sum_probs=14.0
Q ss_pred CCCccccCCCCCCCCCCCcccccc
Q psy15067 9 PRPPDHDETGVCKFGTGCKFAHGA 32 (80)
Q Consensus 9 ~lC~~f~~~g~C~~G~~C~faH~~ 32 (80)
..|+.-. .+.|..| .|.+.++.
T Consensus 6 ~~C~~~~-~~yC~nG-~C~~~~~~ 27 (50)
T 3e50_C 6 NDCPDSH-TQFCFHG-TCRFLVQE 27 (50)
T ss_pred cccChhh-cCcccCC-EEeeccCC
Confidence 3555444 5778888 88776553
No 31
>3c9a_A Protein giant-lens; argos, EGF, EGFR inhibitor, inhibitor, developmental protein, glycoprotein, secreted, sensory transduction, vision; 1.60A {Drosophila melanogaster} PDB: 3cgu_A
Probab=21.91 E-value=8.9 Score=25.85 Aligned_cols=18 Identities=17% Similarity=0.026 Sum_probs=14.5
Q ss_pred cCCCCCCCcccCCCCCCC
Q psy15067 57 FCPYVYFFKIFHPIPYYT 74 (80)
Q Consensus 57 ~C~~G~~C~f~H~~~~~~ 74 (80)
.||.|-+|.+.|+....+
T Consensus 179 qCP~gH~C~~~h~~~g~~ 196 (223)
T 3c9a_A 179 QCPKGHRCPSHHTQSGVI 196 (223)
T ss_dssp BCCTTEECCSSTTSTTEE
T ss_pred cCCCcCcCCcccCCCCcc
Confidence 399999999999887543
Done!