RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15067
         (80 letters)



>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding
          protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
          Length = 77

 Score = 52.3 bits (125), Expect = 5e-11
 Identities = 23/45 (51%), Positives = 31/45 (68%)

Query: 16 ETGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
          E+G C++G  C+FAHG  ELR   RHP+Y+T+LC  +   G CPY
Sbjct: 20 ESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPY 64



 Score = 29.9 bits (67), Expect = 0.023
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 17 TGVCKFGTGCKFAHGAHE 34
           G C +G+ C F H   E
Sbjct: 59 QGRCPYGSRCHFIHNPTE 76



 Score = 29.1 bits (65), Expect = 0.045
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 38 IPRHPRYRTKLCQSYHQDGFCPY 60
          +    RY+T+LC++Y + G C Y
Sbjct: 4  MTTSSRYKTELCRTYSESGRCRY 26


>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH
          zinc-finger, structural genomics, NPPSFA; NMR {Homo
          sapiens}
          Length = 69

 Score = 32.6 bits (74), Expect = 0.002
 Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 7/34 (20%)

Query: 10 RPP-------DHDETGVCKFGTGCKFAHGAHELR 36
          R P       D    G C  G  CKFAHG  EL 
Sbjct: 14 RFPTGYFSICDRYMNGTCPEGNSCKFAHGNAELH 47


>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA,
          national project on protein structural and functional
          analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
          Length = 98

 Score = 29.7 bits (66), Expect = 0.045
 Identities = 11/44 (25%), Positives = 13/44 (29%), Gaps = 14/44 (31%)

Query: 17 TGVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFCPY 60
          TG C     C + HG                 C+ YH  G C  
Sbjct: 21 TGFCARAENCPYMHGDFP--------------CKLYHTTGNCIN 50



 Score = 23.1 bits (49), Expect = 9.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 17 TGVCKFGTGCKFAH 30
          TG C  G  C F+H
Sbjct: 45 TGNCINGDDCMFSH 58


>2rhk_C Cleavage and polyadenylation specificity factor subunit 4;
          influenza A, nonstructural protein, viral protein: HOST
          complex, Zn finger; 1.95A {Homo sapiens}
          Length = 72

 Score = 26.4 bits (58), Expect = 0.49
 Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 9/41 (21%)

Query: 18 GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFC 58
          G+CK G  C+F H              +   C  Y + G C
Sbjct: 25 GLCKKGDQCEFLHEYDM---------TKMSECYFYSKFGEC 56


>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit;
          CCCH zinc-finger, structural genomics, NPPSFA; NMR
          {Homo sapiens}
          Length = 77

 Score = 26.4 bits (58), Expect = 0.50
 Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 9/41 (21%)

Query: 18 GVCKFGTGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFC 58
          G+CK G  C+F H              +   C  Y + G C
Sbjct: 19 GLCKKGDQCEFLHEYDM---------TKMPECYFYSKFGEC 50


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.1 bits (59), Expect = 0.57
 Identities = 6/31 (19%), Positives = 7/31 (22%), Gaps = 7/31 (22%)

Query: 43  RYRTKLCQSYHQDGFCP-----YVYFFKIFH 68
            Y       +  D   P     Y Y     H
Sbjct: 452 HYNIPKT--FDSDDLIPPYLDQYFYSHIGHH 480


>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain,
          alternative splicing, metal- binding, nucleus,
          RNA-binding, zinc, zinc-finger, metal binding; 1.50A
          {Homo sapiens} PDB: 3d2s_A
          Length = 70

 Score = 25.8 bits (56), Expect = 0.69
 Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 3/42 (7%)

Query: 18 GVCKFG-TGCKFAHGAHELRVIPRHPRYRTKLCQSYHQDGFC 58
          G C  G   C+FAH A    +          +C  Y +    
Sbjct: 15 GNCNRGENDCRFAHPADSTMIDTN--DNTVTVCMDYIKGRCS 54


>1h6q_A TCTP, P23FYP, translationally controlled tumor protein;
           tumor-associated protein, function unknown; NMR
           {Schizosaccharomyces pombe} SCOP: b.88.1.2 PDB: 1h7y_A
          Length = 168

 Score = 25.3 bits (55), Expect = 2.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 52  YHQDGFCPYVYFFK 65
           Y +DG  PY+ FFK
Sbjct: 147 YREDGITPYMIFFK 160


>1yz1_A Translationally controlled tumor protein; unknown function; 2.00A
           {Homo sapiens} SCOP: b.88.1.2 PDB: 2hr9_A 3ebm_A
          Length = 174

 Score = 25.2 bits (55), Expect = 2.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 52  YHQDGFCPYVYFFK 65
           Y +DG  PY+ FFK
Sbjct: 153 YREDGVTPYMIFFK 166


>1txj_A Translationally controlled tumour-associated protein (TCTP) from
           plasmodium knowlesi,...; structural genomics consortium,
           SGC; 2.00A {Plasmodium knowlesi} SCOP: b.88.1.2 PDB:
           3p3k_A
          Length = 171

 Score = 24.6 bits (53), Expect = 4.3
 Identities = 2/14 (14%), Positives = 4/14 (28%)

Query: 52  YHQDGFCPYVYFFK 65
           Y  +   P   +  
Sbjct: 150 YKGEEVTPRFVYIS 163


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.327    0.147    0.510 

Gapped
Lambda     K      H
   0.267   0.0502    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,359,006
Number of extensions: 65942
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 21
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.0 bits)