RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15067
         (80 letters)



>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 34

 Score = 38.5 bits (90), Expect = 2e-06
 Identities = 13/21 (61%), Positives = 19/21 (90%)

Query: 40 RHPRYRTKLCQSYHQDGFCPY 60
          RHP+Y+T+LC+++H  GFCPY
Sbjct: 2  RHPKYKTELCRTFHTIGFCPY 22



 Score = 30.4 bits (69), Expect = 0.002
 Identities = 8/19 (42%), Positives = 9/19 (47%)

Query: 16 ETGVCKFGTGCKFAHGAHE 34
            G C +G  C F H A E
Sbjct: 16 TIGFCPYGPRCHFIHNADE 34


>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475)
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 40

 Score = 36.6 bits (85), Expect = 9e-06
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 16 ETGVCKFGTGCKFAHGAHELR 36
          E+G C++G  C+FAHG  ELR
Sbjct: 17 ESGRCRYGAKCQFAHGLGELR 37



 Score = 31.3 bits (71), Expect = 0.001
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 40 RHPRYRTKLCQSYHQDGFCPY 60
             RY+T+LC++Y + G C Y
Sbjct: 3  TSSRYKTELCRTYSESGRCRY 23


>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 36.2 bits (84), Expect = 1e-05
 Identities = 14/21 (66%), Positives = 17/21 (80%)

Query: 16 ETGVCKFGTGCKFAHGAHELR 36
          E+G CK+G  C+FAHG HELR
Sbjct: 14 ESGTCKYGEKCQFAHGFHELR 34



 Score = 31.2 bits (71), Expect = 0.001
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 43 RYRTKLCQSYHQDGFCPY 60
          RY+T+LC+ + + G C Y
Sbjct: 3  RYKTELCRPFEESGTCKY 20


>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein
           TCTP (histamine-releasing factor) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 172

 Score = 25.8 bits (57), Expect = 0.52
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 52  YHQDGFCPYVYFFK 65
           Y +DG  PY+ FFK
Sbjct: 151 YREDGVTPYMIFFK 164


>d1h6qa_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
           (histamine-releasing factor) {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 168

 Score = 25.5 bits (56), Expect = 0.66
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 52  YHQDGFCPYVYFFK 65
           Y +DG  PY+ FFK
Sbjct: 147 YREDGITPYMIFFK 160


>d1dkla_ c.60.1.2 (A:) Phytase
           (myo-inositol-hexakisphosphate-3-phosphohydrolase)
           {Escherichia coli [TaxId: 562]}
          Length = 409

 Score = 24.6 bits (52), Expect = 1.6
 Identities = 7/36 (19%), Positives = 12/36 (33%)

Query: 35  LRVIPRHPRYRTKLCQSYHQDGFCPYVYFFKIFHPI 70
           L   P   +     C+  +  G C    F +I +  
Sbjct: 367 LNTPPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEA 402


>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
           (histamine-releasing factor) {Plasmodium knowlesi
           [TaxId: 5850]}
          Length = 171

 Score = 24.0 bits (52), Expect = 2.0
 Identities = 2/14 (14%), Positives = 4/14 (28%)

Query: 52  YHQDGFCPYVYFFK 65
           Y  +   P   +  
Sbjct: 150 YKGEEVTPRFVYIS 163


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.147    0.510 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 348,259
Number of extensions: 14180
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 13
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)