BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15068
(710 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 109/248 (43%), Gaps = 42/248 (16%)
Query: 59 LLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVND 118
++C+ + K+ E++ + QD RTAL+ A G ++V L+ G VND
Sbjct: 10 MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 69
Query: 119 RDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEII 178
+D+ G++PLH+A G IVK LL K A V A TP+ + S + +EI
Sbjct: 70 KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA------SKNRHEIA 123
Query: 179 SMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAI 238
ML+E GAN K + + + +H A K NL ++ +L+ KA TN
Sbjct: 124 VMLLEGGANPDAKDHY-EATAMHRAAAKGNLKMIHILLYYKASTN--------------- 167
Query: 239 ESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFL 298
I D + N+ LH AC ++ ++LV + I +N+
Sbjct: 168 --------------------IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEK 207
Query: 299 PPMFFAIG 306
P+ A G
Sbjct: 208 TPLQVAKG 215
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 33/227 (14%)
Query: 406 LTETQKAFISD---ARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKP 462
L E +++ ++D A +D R+AL +AC + E+V+ LL G VND + P
Sbjct: 20 LEELKESILADKSLATRTDQDSRTALHWACS-AGHTEIVEFLLQLGVPVNDKDD-AGWSP 77
Query: 463 LAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAHSTTELEERXXXXXXXXXXXXX 522
L +A +G +IVK L GAQ++ N + T L
Sbjct: 78 LHIAASAGRDEIVKALLGKGAQVNAVNQ----------NGCTPLH--------------- 112
Query: 523 XXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSA 582
N+++ +E GA + +A+ A KG +++ +LL A N +
Sbjct: 113 -YAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT 171
Query: 583 TGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAG 629
G T LH+AC + + L+ GA +++ K KTPL+ A+ G
Sbjct: 172 EGNTPLHLACDEERVEE-AKLLVSQGASIYIEN-KEEKTPLQVAKGG 216
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 9/181 (4%)
Query: 528 SNKYDEVKKNI-EDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
S K +E+K++I D + + + +AL + G+ EIV+ LL G VN K G++
Sbjct: 17 SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWS 76
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRXXXXXXXXXXNLFA 646
LH+A D IV+ LL GA + + + G TPL +A A KNR
Sbjct: 77 PLHIAASA-GRDEIVKALLGKGAQVNAVN-QNGCTPLHYA-ASKNRHEIAVMLLEGGANP 133
Query: 647 SVTNPYDPNVYHRIELMNSAKQLGLVHVFEIMKVVKNYAGETLIGVARKMNYSFLERLEE 706
+ Y+ HR + K + ++ ++ +++ G T + +A ER+EE
Sbjct: 134 DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE-----ERVEE 188
Query: 707 V 707
Sbjct: 189 A 189
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 94/249 (37%), Gaps = 68/249 (27%)
Query: 247 EAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIG 306
E+ L K+ + +D D + LH AC G+ +IV+ L++ +N ++ P+ A
Sbjct: 25 ESILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 83
Query: 307 MGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIID 366
GR D+I+K ++
Sbjct: 84 AGR------------------------------------------------DEIVKALLG 95
Query: 367 RTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRS 426
+ +NA + TPL +AA + A L++ GAN DA+ + +
Sbjct: 96 KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-----------PDAKDH---YEA 141
Query: 427 ALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQID 486
+ K N++M+ +LL + A N + PL +A + K L + GA I
Sbjct: 142 TAMHRAAAKGNLKMIHILLYYKASTN-IQDTEGNTPLHLACDEERVEEAKLLVSQGASI- 199
Query: 487 KENYLKNKE 495
Y++NKE
Sbjct: 200 ---YIENKE 205
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 18/187 (9%)
Query: 220 ADTNLIVKVNQEP--LLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNL 277
AD +L + +Q+ L +A + +IVE FL V+ D S LH A G
Sbjct: 29 ADKSLATRTDQDSRTALHWACSAGHTEIVE-FLLQLGVPVNDKDDAGWSPLHIAASAGRD 87
Query: 278 QIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLL 337
+IV+ L+ + +NA N+ P+ +A K+ H +L + N P + +
Sbjct: 88 EIVKALLGKGAQVNAVNQNGCTPLHYA---ASKNRHEIAVMLLEGGAN---PDAKDHY-- 139
Query: 338 DTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYL 397
+ M + K ++I ++ + N + + TPL A ++ AK L
Sbjct: 140 -------EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 192
Query: 398 IQKGANV 404
+ +GA++
Sbjct: 193 VSQGASI 199
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 109/248 (43%), Gaps = 42/248 (16%)
Query: 59 LLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVND 118
++C+ + K+ E++ + QD RTAL+ A G ++V L+ G VND
Sbjct: 9 MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 119 RDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEII 178
+D+ G++PLH+A G IVK LL K A V A TP+ + S + +EI
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA------SKNRHEIA 122
Query: 179 SMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAI 238
ML+E GAN K + + + +H A K NL ++ +L+ KA TN
Sbjct: 123 VMLLEGGANPDAKDHY-EATAMHRAAAKGNLKMIHILLYYKASTN--------------- 166
Query: 239 ESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFL 298
I D + N+ LH AC ++ ++LV + I +N+
Sbjct: 167 --------------------IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEK 206
Query: 299 PPMFFAIG 306
P+ A G
Sbjct: 207 TPLQVAKG 214
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 33/227 (14%)
Query: 406 LTETQKAFISD---ARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKP 462
L E +++ ++D A +D R+AL +AC + E+V+ LL G VND + P
Sbjct: 19 LEELKESILADKSLATRTDQDSRTALHWACS-AGHTEIVEFLLQLGVPVNDKDD-AGWSP 76
Query: 463 LAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAHSTTELEERXXXXXXXXXXXXX 522
L +A +G +IVK L GAQ++ N + T L
Sbjct: 77 LHIAASAGRDEIVKALLGKGAQVNAVNQ----------NGCTPLH--------------- 111
Query: 523 XXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSA 582
N+++ +E GA + +A+ A KG +++ +LL A N +
Sbjct: 112 -YAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT 170
Query: 583 TGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAG 629
G T LH+AC + + L+ GA +++ K KTPL+ A+ G
Sbjct: 171 EGNTPLHLACDEERVEE-AKLLVSQGASIYIEN-KEEKTPLQVAKGG 215
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 9/181 (4%)
Query: 528 SNKYDEVKKNI-EDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
S K +E+K++I D + + + +AL + G+ EIV+ LL G VN K G++
Sbjct: 16 SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWS 75
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRXXXXXXXXXXNLFA 646
LH+A D IV+ LL GA + + + G TPL +A A KNR
Sbjct: 76 PLHIAASA-GRDEIVKALLGKGAQVNAVN-QNGCTPLHYA-ASKNRHEIAVMLLEGGANP 132
Query: 647 SVTNPYDPNVYHRIELMNSAKQLGLVHVFEIMKVVKNYAGETLIGVARKMNYSFLERLEE 706
+ Y+ HR + K + ++ ++ +++ G T + +A ER+EE
Sbjct: 133 DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE-----ERVEE 187
Query: 707 V 707
Sbjct: 188 A 188
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 94/249 (37%), Gaps = 68/249 (27%)
Query: 247 EAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIG 306
E+ L K+ + +D D + LH AC G+ +IV+ L++ +N ++ P+ A
Sbjct: 24 ESILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 82
Query: 307 MGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIID 366
GR D+I+K ++
Sbjct: 83 AGR------------------------------------------------DEIVKALLG 94
Query: 367 RTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRS 426
+ +NA + TPL +AA + A L++ GAN DA+ + +
Sbjct: 95 KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-----------PDAKDH---YEA 140
Query: 427 ALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQID 486
+ K N++M+ +LL + A N + PL +A + K L + GA I
Sbjct: 141 TAMHRAAAKGNLKMIHILLYYKASTN-IQDTEGNTPLHLACDEERVEEAKLLVSQGASI- 198
Query: 487 KENYLKNKE 495
Y++NKE
Sbjct: 199 ---YIENKE 204
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 18/187 (9%)
Query: 220 ADTNLIVKVNQEP--LLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNL 277
AD +L + +Q+ L +A + +IVE FL V+ D S LH A G
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVE-FLLQLGVPVNDKDDAGWSPLHIAASAGRD 86
Query: 278 QIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLL 337
+IV+ L+ + +NA N+ P+ +A K+ H +L + N P + +
Sbjct: 87 EIVKALLGKGAQVNAVNQNGCTPLHYA---ASKNRHEIAVMLLEGGAN---PDAKDHY-- 138
Query: 338 DTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYL 397
+ M + K ++I ++ + N + + TPL A ++ AK L
Sbjct: 139 -------EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 191
Query: 398 IQKGANV 404
+ +GA++
Sbjct: 192 VSQGASI 198
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 107/393 (27%), Positives = 164/393 (41%), Gaps = 41/393 (10%)
Query: 92 TALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRA 151
T L++A G +V L+ GA+ N + K TPLH+A G+ + K+LL KA V A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 152 KCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSV 211
K TP L +A + TN ++ +L+EN AN +PLH A + ++
Sbjct: 76 KAKDDQTP-LHCAARIGH----TN-MVKLLLENNANPNLAT-TAGHTPLHIAAREGHVET 128
Query: 212 VELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKA 271
V L++ +A + K P L A + V++ E L + L LH A
Sbjct: 129 VLALLEKEASQACMTKKGFTP-LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP-LHVA 186
Query: 272 CHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQ-QDSINVNLPI 330
H NL IV++L+ R ++ P+ A + VA LLQ S N
Sbjct: 187 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA--AKQNQVEVARSLLQYGGSANA---- 240
Query: 331 KRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCD 390
++V + + +Q + +++ ++ + N N +TPL A+
Sbjct: 241 -------ESVQGVTPLHLAAQ---EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH 290
Query: 391 LQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGAD 450
+ A LI+ G V+ T T+ + + H NI++VK LL H AD
Sbjct: 291 VPVADVLIKHGVMVDAT-TRMGYTP-------------LHVASHYGNIKLVKFLLQHQAD 336
Query: 451 VNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGA 483
VN K PL A Q G IV L GA
Sbjct: 337 VN-AKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 368
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 99/399 (24%), Positives = 163/399 (40%), Gaps = 76/399 (19%)
Query: 83 VNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFL 142
VN K +D +T L+ A G MV LL+ + AN N G+TPLH+A G+ V L
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 143 LSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGA--NVREKMPFTDFSPL 200
L K+A TP L V+A + + +L+E A N K +PL
Sbjct: 133 LEKEASQACMTKKGFTP-LHVAAKYGKV-----RVAELLLERDAHPNAAGK---NGLTPL 183
Query: 201 HFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSIS 260
H AV NL +V+LL+ + P L A + N V++ + L + S
Sbjct: 184 HVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVARSLLQYGGSANAES 242
Query: 261 DGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQ 320
+ LH A G+ ++V +L+ ++ + N N+ L P+ G H VA+ L++
Sbjct: 243 VQGVTP-LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG--HVPVADVLIK 299
Query: 321 QDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMIT 380
++D T + T
Sbjct: 300 HGV----------------------------------------MVDATTRMG------YT 313
Query: 381 PLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEM 440
PL A+ + +++ K+L+Q A+VN +T+ + S L A + + + ++
Sbjct: 314 PLHVASHYGNIKLVKFLLQHQADVN-AKTKLGY------------SPLHQAAQ-QGHTDI 359
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQ 479
V LLL +GA N+ S+ PLA+A + G + L+
Sbjct: 360 VTLLLKNGASPNEVSSD-GTTPLAIAKRLGYISVTDVLK 397
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 9/180 (5%)
Query: 48 NSSSAKSVE-LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMV 106
S++A+SV+ +T L A + V LLS + N + G T L++ +G +
Sbjct: 236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVA 294
Query: 107 TLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSAN 166
+LI HG V+ GYTPLH+A + GN +VKFLL +ADV AK + +P+ +
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ 354
Query: 167 MSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIV 226
D I+++L++NGA+ E + +PL A +SV ++L +T+ ++
Sbjct: 355 GHTD------IVTLLLKNGASPNE-VSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL 407
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 8/206 (3%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
LT L AV N + V+ LL G + +G T L++A Q ++ L+ +G +
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNE 176
N +G TPLHLA G+ +V LLSK+A+ +TP+ V+ D
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD--- 295
Query: 177 IISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFF 236
+LI++G V + ++PLH A N+ +V+ L++ +AD N K+ PL
Sbjct: 296 ---VLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA 351
Query: 237 AIESNSVKIVEAFLNSKNFDVSISDG 262
A + ++ + N + + SDG
Sbjct: 352 AQQGHTDIVTLLLKNGASPNEVSSDG 377
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 111/255 (43%), Gaps = 16/255 (6%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
T L A K+R E LL H N ++G T L++A+ +V LL+ G +
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI-LAVSANMSEDSTDTN 175
+ GYTPLH+A + + LL A+ VTP+ LA +E
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE------ 259
Query: 176 EIISMLIENGAN--VREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPL 233
++++L+ AN + K + +PLH + ++ V ++LIK + ++ PL
Sbjct: 260 -MVALLLSKQANGNLGNK---SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL 315
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
A ++K+V+ FL DV+ S LH+A G+ IV +L+K N
Sbjct: 316 -HVASHYGNIKLVK-FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373
Query: 294 NRYFLPPMFFAIGMG 308
+ P+ A +G
Sbjct: 374 SSDGTTPLAIAKRLG 388
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 107/473 (22%), Positives = 192/473 (40%), Gaps = 113/473 (23%)
Query: 259 ISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYL 318
+S+ + + LH A G+ ++ + L++ K +NA+ + P+ A +G HT++ + L
Sbjct: 42 VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIG--HTNMVKLL 99
Query: 319 LQQDSINVNLPIKRPNLLL---------DTVMSLKDPKVMSQTQIKRLD----------- 358
L+ ++ N NL + L +TV++L + K SQ + +
Sbjct: 100 LENNA-NPNLATTAGHTPLHIAAREGHVETVLALLE-KEASQACMTKKGFTPLHVAAKYG 157
Query: 359 --QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISD 416
++ + +++R + NA G + +TPL A H +L K L+ +G +
Sbjct: 158 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS------------- 204
Query: 417 ARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVK 476
S + + L A K +N +E+ + LL +G N S + PL +A Q G ++V
Sbjct: 205 PHSPAWNGYTPLHIAAK-QNQVEVARSLLQYGGSANAESVQ-GVTPLHLAAQEGHAEMVA 262
Query: 477 ELQNYGAQIDKENYLKNKEAARIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKK 536
L + A + L NK H +
Sbjct: 263 LLLSKQANGN----LGNKSGLTPLH----------------------LVAQEGHVPVADV 296
Query: 537 NIEDGACVNVSSERRGSALIYVAWK-GYEEIVDLLLDNGADVNFKSATGFTALHMACRFH 595
I+ G V+ ++ R G ++VA G ++V LL + ADVN K+ G++ LH A +
Sbjct: 297 LIKHGVMVDATT-RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ-Q 354
Query: 596 SNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRXXXXXXXXXXNLFASVTNPYDPN 655
+ +IV LL +GA + + G TPL
Sbjct: 355 GHTDIVTLLLKNGASPN-EVSSDGTTPLA------------------------------- 382
Query: 656 VYHRIELMNSAKQLGLVHVFEIMKVVKNYAGETLIGVARKMNYSFLERLEEVL 708
AK+LG + V +++KVV + + + V+ K SF E ++E+L
Sbjct: 383 ---------IAKRLGYISVTDVLKVVTDET--SFVLVSDKHRMSFPETVDEIL 424
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 140/356 (39%), Gaps = 58/356 (16%)
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
LH A +G+L IV+ L++R N N P+ A G HT VA+YLLQ + VN
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAG--HTEVAKYLLQNKA-KVN 74
Query: 328 LPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAK 387
K D L + T + +K +++ N N TPL AA+
Sbjct: 75 AKAK------DDQTPLHCAARIGHTNM------VKLLLENNANPNLATTAGHTPLHIAAR 122
Query: 388 HCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLH 447
+++ L++K A+ T+K F + L A K+ + + +LLL
Sbjct: 123 EGHVETVLALLEKEAS-QACMTKKGF------------TPLHVAAKY-GKVRVAELLLER 168
Query: 448 GADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAHSTTELE 507
A N + K PL VA+ + IVK L G + + T L
Sbjct: 169 DAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW----------NGYTPLH 217
Query: 508 ERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIV 567
+ N+ + + ++ G N S + + L A +G+ E+V
Sbjct: 218 ----------------IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 261
Query: 568 DLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPL 623
LLL A+ N + +G T LH+ + + + L+ HG D + G TPL
Sbjct: 262 ALLLSKQANGNLGNKSGLTPLHLVAQ-EGHVPVADVLIKHGVMVDATT-RMGYTPL 315
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 99/255 (38%), Gaps = 46/255 (18%)
Query: 379 ITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNI 438
+TPL A+ L K L+Q+GA+ N+ S+ + L A + +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNV-------------SNVKVETPLHMAAR-AGHT 60
Query: 439 EMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAAR 498
E+ K LL + A VN + K Q PL A + G +VK L EN A
Sbjct: 61 EVAKYLLQNKAKVNAKA-KDDQTPLHCAARIGHTNMVKLLL--------ENNANPNLATT 111
Query: 499 IAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYV 558
H+ + R + V +E A ++G ++V
Sbjct: 112 AGHTPLHI------------------AAREGHVETVLALLEKEAS-QACMTKKGFTPLHV 152
Query: 559 AWK-GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGK 617
A K G + +LLL+ A N G T LH+A H+N +IV+ LL G
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH-HNNLDIVKLLLPRGG-SPHSPAW 210
Query: 618 TGKTPLKHAEAGKNR 632
G TPL H A +N+
Sbjct: 211 NGYTPL-HIAAKQNQ 224
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 108/248 (43%), Gaps = 42/248 (16%)
Query: 59 LLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVND 118
++C+ + K+ E++ + QD RTAL+ A G ++V L+ G VND
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 119 RDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEII 178
+D+ G++PLH+A G IVK LL K A V A TP+ + S + +EI
Sbjct: 69 KDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAA------SKNRHEIA 122
Query: 179 SMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAI 238
ML+E GAN K + D + +H A K NL +V +L+ KA TN
Sbjct: 123 VMLLEGGANPDAKDHY-DATAMHRAAAKGNLKMVHILLFYKASTN--------------- 166
Query: 239 ESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFL 298
I D + N+ LH AC ++ + LV + I +N+
Sbjct: 167 --------------------IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEK 206
Query: 299 PPMFFAIG 306
P+ A G
Sbjct: 207 TPLQVAKG 214
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 7/157 (4%)
Query: 528 SNKYDEVKKNI-EDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
S K DE+K+ I D + + + +AL + G+ EIV+ LL G VN K G++
Sbjct: 16 SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWS 75
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRXXXXXXXXXXNLFA 646
LH+A D IV+ LL GA+ + + + G TPL +A A KNR
Sbjct: 76 PLHIAASA-GRDEIVKALLVKGAHVNAVN-QNGCTPLHYA-ASKNRHEIAVMLLEGGANP 132
Query: 647 SVTNPYDPNVYHRIELMNSAKQLGLVHVFEIMKVVKN 683
+ YD HR + L +VH+ K N
Sbjct: 133 DAKDHYDATAMHRAA---AKGNLKMVHILLFYKASTN 166
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 33/227 (14%)
Query: 406 LTETQKAFISD---ARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKP 462
L E ++ ++D A +D R+AL +AC + E+V+ LL G VND + P
Sbjct: 19 LDELKERILADKSLATRTDQDSRTALHWACS-AGHTEIVEFLLQLGVPVNDKDD-AGWSP 76
Query: 463 LAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAHSTTELEERXXXXXXXXXXXXX 522
L +A +G +IVK L GA ++ N + T L
Sbjct: 77 LHIAASAGRDEIVKALLVKGAHVNAVNQ----------NGCTPLH--------------- 111
Query: 523 XXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSA 582
N+++ +E GA + +A+ A KG ++V +LL A N +
Sbjct: 112 -YAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT 170
Query: 583 TGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAG 629
G T LH+AC + + L+ GA +++ K KTPL+ A+ G
Sbjct: 171 EGNTPLHLACDEERVEE-AKFLVTQGASIYIEN-KEEKTPLQVAKGG 215
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 67/236 (28%)
Query: 260 SDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLL 319
+D D + LH AC G+ +IV+ L++ +N ++ P+ A GR
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR---------- 85
Query: 320 QQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMI 379
D+I+K ++ + ++NA +
Sbjct: 86 --------------------------------------DEIVKALLVKGAHVNAVNQNGC 107
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
TPL +AA + A L++ GAN DA+ D +A+ A K N++
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGAN-----------PDAK--DHYDATAMHRAAA-KGNLK 153
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE 495
MV +LL + A N + PL +A + K L GA I Y++NKE
Sbjct: 154 MVHILLFYKASTN-IQDTEGNTPLHLACDEERVEEAKFLVTQGASI----YIENKE 204
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 108/248 (43%), Gaps = 42/248 (16%)
Query: 59 LLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVND 118
++C+ + K+ E++ + QD RTAL+ A G ++V L+ G VND
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 119 RDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEII 178
+D+ G++PLH+A G IVK LL K A V A TP+ + S + +EI
Sbjct: 69 KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA------SKNRHEIA 122
Query: 179 SMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAI 238
ML+E GAN K + D + +H A K NL +V +L+ KA TN
Sbjct: 123 VMLLEGGANPDAKDHY-DATAMHRAAAKGNLKMVHILLFYKASTN--------------- 166
Query: 239 ESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFL 298
I D + N+ LH AC ++ + LV + I +N+
Sbjct: 167 --------------------IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEK 206
Query: 299 PPMFFAIG 306
P+ A G
Sbjct: 207 TPLQVAKG 214
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 7/157 (4%)
Query: 528 SNKYDEVKKNI-EDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
S K DE+K+ I D + + + +AL + G+ EIV+ LL G VN K G++
Sbjct: 16 SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWS 75
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRXXXXXXXXXXNLFA 646
LH+A D IV+ LL GA+ + + + G TPL +A A KNR
Sbjct: 76 PLHIAASA-GXDEIVKALLVKGAHVNAVN-QNGCTPLHYA-ASKNRHEIAVMLLEGGANP 132
Query: 647 SVTNPYDPNVYHRIELMNSAKQLGLVHVFEIMKVVKN 683
+ YD HR + L +VH+ K N
Sbjct: 133 DAKDHYDATAMHRAA---AKGNLKMVHILLFYKASTN 166
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 33/227 (14%)
Query: 406 LTETQKAFISD---ARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKP 462
L E ++ ++D A +D R+AL +AC + E+V+ LL G VND + P
Sbjct: 19 LDELKERILADKSLATRTDQDSRTALHWACS-AGHTEIVEFLLQLGVPVNDKDD-AGWSP 76
Query: 463 LAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAHSTTELEERXXXXXXXXXXXXX 522
L +A +G +IVK L GA ++ N + T L
Sbjct: 77 LHIAASAGXDEIVKALLVKGAHVNAVNQ----------NGCTPLH--------------- 111
Query: 523 XXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSA 582
N+++ +E GA + +A+ A KG ++V +LL A N +
Sbjct: 112 -YAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT 170
Query: 583 TGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAG 629
G T LH+AC + + L+ GA +++ K KTPL+ A+ G
Sbjct: 171 EGNTPLHLACDEERVEE-AKFLVTQGASIYIEN-KEEKTPLQVAKGG 215
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 89/236 (37%), Gaps = 67/236 (28%)
Query: 260 SDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLL 319
+D D + LH AC G+ +IV+ L++ +N ++ P+ A G
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX---------- 85
Query: 320 QQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMI 379
D+I+K ++ + ++NA +
Sbjct: 86 --------------------------------------DEIVKALLVKGAHVNAVNQNGC 107
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
TPL +AA + A L++ GAN DA+ D +A+ A K N++
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGAN-----------PDAK--DHYDATAMHRAAA-KGNLK 153
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE 495
MV +LL + A N + PL +A + K L GA I Y++NKE
Sbjct: 154 MVHILLFYKASTN-IQDTEGNTPLHLACDEERVEEAKFLVTQGASI----YIENKE 204
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 85/159 (53%), Gaps = 9/159 (5%)
Query: 59 LLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVND 118
L+ +A NK R V+ L+ G DVN DGRT L+ A G ++V LLI GA+VN
Sbjct: 8 LIEAAENGNKDR-VKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA 65
Query: 119 RDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEII 178
+D G TPLH A G+K +VK L+SK ADV AK S TP+ + N + E++
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK------EVV 119
Query: 179 SMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIK 217
+LI GA+V +PL A N VV+LL K
Sbjct: 120 KLLISKGADVN-TSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 75/157 (47%), Gaps = 9/157 (5%)
Query: 130 ACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVR 189
A GNK+ VK L+ ADV A S TP+ + N + E++ +LI GA+V
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHK------EVVKLLISKGADVN 64
Query: 190 EKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAF 249
K +PLH A + VV+LLI AD N + PL A N K V
Sbjct: 65 AK-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA--ENGHKEVVKL 121
Query: 250 LNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKR 286
L SK DV+ SD D + L A GN ++V++L K+
Sbjct: 122 LISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 532 DEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
D VK IE+GA VN S + L + A G++E+V LL+ GADVN K + G T LH A
Sbjct: 18 DRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHA 77
Query: 592 CRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
+ + +V+ L+ GA + KD G+TPL HA
Sbjct: 78 AE-NGHKEVVKLLISKGADVNAKD-SDGRTPLHHA 110
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 19/130 (14%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+++K +I + ++NA+ D TPL AA++ + K LI KGA+VN A+
Sbjct: 51 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-----------AK 99
Query: 419 SSDFCFRSALQYACK--HKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVK 476
SD R+ L +A + HK E+VKLL+ GADVN TS+ + PL +A + G+ ++VK
Sbjct: 100 DSD--GRTPLHHAAENGHK---EVVKLLISKGADVN-TSDSDGRTPLDLAREHGNEEVVK 153
Query: 477 ELQNYGAQID 486
L+ G ++
Sbjct: 154 LLEKQGGWLE 163
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ LIENGA+V +PLH A + VV+LLI AD N + PL A
Sbjct: 20 VKDLIENGADVN-ASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 78
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYF 297
N K V L SK DV+ D D + LH A G+ ++V++L+ + D+N +
Sbjct: 79 --ENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDG 136
Query: 298 LPPMFFA 304
P+ A
Sbjct: 137 RTPLDLA 143
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 30/177 (16%)
Query: 437 NIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEA 496
N + VK L+ +GADVN S+ + PL A ++G ++VK L + GA ++ K+ +
Sbjct: 16 NKDRVKDLIENGADVN-ASDSDGRTPLHHAAENGHKEVVKLLISKGADVN----AKDSDG 70
Query: 497 ARIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKN-IEDGACVNVSSERRGSAL 555
H E N + EV K I GA VN + L
Sbjct: 71 RTPLHHAAE-----------------------NGHKEVVKLLISKGADVNAKDSDGRTPL 107
Query: 556 IYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYD 612
+ A G++E+V LL+ GADVN + G T L +A R H N+ +V+ L G + +
Sbjct: 108 HHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLA-REHGNEEVVKLLEKQGGWLE 163
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 73/195 (37%), Gaps = 50/195 (25%)
Query: 208 NLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSL 267
N V+ LI+ AD N + PL A N K V L SK DV+ D D +
Sbjct: 16 NKDRVKDLIENGADVNASDSDGRTPLHHAA--ENGHKEVVKLLISKGADVNAKDSDGRTP 73
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
LH A G+ ++V++L+ + D+NA++ P+ A G K
Sbjct: 74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK----------------- 116
Query: 328 LPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAK 387
+++K +I + ++N D TPL A +
Sbjct: 117 -------------------------------EVVKLLISKGADVNTSDSDGRTPLDLARE 145
Query: 388 HCDLQSAKYLIQKGA 402
H + + K L ++G
Sbjct: 146 HGNEEVVKLLEKQGG 160
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G LI A G ++ V L++NGADVN + G T LH A + + +V+ L+ GA
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAE-NGHKEVVKLLISKGADV 63
Query: 612 DMKDGKTGKTPLKHA 626
+ KD G+TPL HA
Sbjct: 64 NAKD-SDGRTPLHHA 77
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 85/159 (53%), Gaps = 9/159 (5%)
Query: 59 LLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVND 118
L+ +A NK R V+ L+ G DVN DGRT L+ A +G ++V LLI GA+VN
Sbjct: 8 LIEAAENGNKDR-VKDLIENG-ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA 65
Query: 119 RDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEII 178
+D G TPLH A G+K IVK L+SK ADV AK S TP+ + + EI+
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHK------EIV 119
Query: 179 SMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIK 217
+LI GA+V +PL A N +V+LL K
Sbjct: 120 KLLISKGADVN-TSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 65/115 (56%), Gaps = 7/115 (6%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
V+ L+S G DVN K DGRT L+ A +G ++V LLI GA+VN +D G TPLH A
Sbjct: 53 VKLLISKG-ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA 111
Query: 132 YLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGA 186
G+K IVK L+SK ADV S TP+ + +E EI+ +L + G
Sbjct: 112 KEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNE------EIVKLLEKQGG 160
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 15/128 (11%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+I+K +I + ++NA+ D TPL +AAK + K LI KGA+VN A+
Sbjct: 51 EIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN-----------AK 99
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
SD R+ L YA K + + E+VKLL+ GADVN TS+ + PL +A + G+ +IVK L
Sbjct: 100 DSD--GRTPLHYAAK-EGHKEIVKLLISKGADVN-TSDSDGRTPLDLAREHGNEEIVKLL 155
Query: 479 QNYGAQID 486
+ G ++
Sbjct: 156 EKQGGWLE 163
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 9/157 (5%)
Query: 130 ACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVR 189
A GNK+ VK L+ ADV A S TP+ + + EI+ +LI GA+V
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHK------EIVKLLISKGADVN 64
Query: 190 EKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAF 249
K +PLH+A + + +V+LLI AD N + PL + A E + K +
Sbjct: 65 AK-DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH--KEIVKL 121
Query: 250 LNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKR 286
L SK DV+ SD D + L A GN +IV++L K+
Sbjct: 122 LISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 532 DEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
D VK IE+GA VN S + L Y A +G++EIV LL+ GADVN K + G T LH A
Sbjct: 18 DRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYA 77
Query: 592 CRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
+ + IV+ L+ GA + KD G+TPL +A
Sbjct: 78 AK-EGHKEIVKLLISKGADVNAKD-SDGRTPLHYA 110
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ LIENGA+V +PLH+A + + +V+LLI AD N + PL + A
Sbjct: 20 VKDLIENGADVN-ASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA 78
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYF 297
E + K + L SK DV+ D D + LH A G+ +IV++L+ + D+N +
Sbjct: 79 KEGH--KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDG 136
Query: 298 LPPMFFA 304
P+ A
Sbjct: 137 RTPLDLA 143
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
I GA VN + L Y A +G++EIV LL+ GADVN K + G T LH A + +
Sbjct: 57 ISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAK-EGH 115
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKTPL 623
IV+ L+ GA + D G+TPL
Sbjct: 116 KEIVKLLISKGADVNTSD-SDGRTPL 140
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 208 NLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSL 267
N V+ LI+ AD N + PL + A E + K + L SK DV+ D D +
Sbjct: 16 NKDRVKDLIENGADVNASDSDGRTPLHYAAKEGH--KEIVKLLISKGADVNAKDSDGRTP 73
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRK 310
LH A G+ +IV++L+ + D+NA++ P+ +A G K
Sbjct: 74 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHK 116
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G LI A G ++ V L++NGADVN + G T LH A + + IV+ L+ GA
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAK-EGHKEIVKLLISKGADV 63
Query: 612 DMKDGKTGKTPLKHA 626
+ KD G+TPL +A
Sbjct: 64 NAKD-SDGRTPLHYA 77
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 86/163 (52%), Gaps = 17/163 (10%)
Query: 59 LLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVND 118
L+ +A NK R V+ LL G DVN DG+T L++A G ++V LL+ GA+ N
Sbjct: 8 LIEAAENGNKDR-VKDLLENG-ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA 65
Query: 119 RDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEII 178
+D G TPLHLA G+K +VK LLS+ AD AK S TP+ + N + E++
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHK------EVV 119
Query: 179 SMLIENGANVREKMPFTDFS----PLHFAVVKKNLSVVELLIK 217
+L+ GA+ P T S PL A N VV+LL K
Sbjct: 120 KLLLSQGAD-----PNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 532 DEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
D VK +E+GA VN S + L A G++E+V LLL GAD N K + G T LH+A
Sbjct: 18 DRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLA 77
Query: 592 CRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPL 623
+ + +V+ LL GA + KD GKTPL
Sbjct: 78 AE-NGHKEVVKLLLSQGADPNAKD-SDGKTPL 107
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 130 ACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVR 189
A GNK+ VK LL ADV A S TP+ + N + E++ +L+ GA+
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHK------EVVKLLLSQGADPN 64
Query: 190 EKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAF 249
K +PLH A + VV+LL+ AD N + P L A E+ ++V+
Sbjct: 65 AK-DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTP-LHLAAENGHKEVVKLL 122
Query: 250 LNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKR 286
L S+ D + SD D + L A GN ++V++L K+
Sbjct: 123 L-SQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 15/128 (11%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+++K ++ + + NA+ D TPL AA++ + K L+ +GA+ N A+
Sbjct: 51 EVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN-----------AK 99
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
SD L HK E+VKLLL GAD N TS+ + PL +A + G+ ++VK L
Sbjct: 100 DSDGKTPLHLAAENGHK---EVVKLLLSQGADPN-TSDSDGRTPLDLAREHGNEEVVKLL 155
Query: 479 QNYGAQID 486
+ G ++
Sbjct: 156 EKQGGWLE 163
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 30/177 (16%)
Query: 437 NIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEA 496
N + VK LL +GADVN S+ + PL +A ++G ++VK L + GA + K+ +
Sbjct: 16 NKDRVKDLLENGADVN-ASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN----AKDSDG 70
Query: 497 ARIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKK-NIEDGACVNVSSERRGSAL 555
H E N + EV K + GA N + L
Sbjct: 71 KTPLHLAAE-----------------------NGHKEVVKLLLSQGADPNAKDSDGKTPL 107
Query: 556 IYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYD 612
A G++E+V LLL GAD N + G T L +A R H N+ +V+ L G + +
Sbjct: 108 HLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLA-REHGNEEVVKLLEKQGGWLE 163
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 541 GACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNI 600
GA N + L A G++E+V LLL GAD N K + G T LH+A + + +
Sbjct: 60 GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAE-NGHKEV 118
Query: 601 VRKLLHHGAYYDMKDGKTGKTPL 623
V+ LL GA + D G+TPL
Sbjct: 119 VKLLLSQGADPNTSD-SDGRTPL 140
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G LI A G ++ V LL+NGADVN + G T LH+A + + +V+ LL GA
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAE-NGHKEVVKLLLSQGADP 63
Query: 612 DMKDGKTGKTPL 623
+ KD GKTPL
Sbjct: 64 NAKD-SDGKTPL 74
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 203 AVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDG 262
A N V+ L++ AD N + PL A E+ ++V+ L S+ D + D
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPL-HLAAENGHKEVVKLLL-SQGADPNAKDS 68
Query: 263 DLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQ 321
D + LH A G+ ++V++L+ + D NA++ P+ A G H V + LL Q
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENG--HKEVVKLLLSQ 125
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 83/163 (50%), Gaps = 17/163 (10%)
Query: 59 LLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVND 118
L+ +A NK R V+ LL G D N DGRT L+ A G ++V LL+ GA+ N
Sbjct: 8 LIEAAENGNKDR-VKDLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA 65
Query: 119 RDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEII 178
+D G TPLH A G+K IVK LLSK AD AK S TP+ + N + EI+
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHK------EIV 119
Query: 179 SMLIENGANVREKMPFTDFS----PLHFAVVKKNLSVVELLIK 217
+L+ GA+ P T S PL A N +V+LL K
Sbjct: 120 KLLLSKGAD-----PNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 94 LYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKC 153
L A G V L+ +GA+ N D G TPLH A G+K IVK LLSK AD AK
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 154 SMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVE 213
S TP+ + N + EI+ +L+ GA+ K +PLH+A + +V+
Sbjct: 68 SDGRTPLHYAAENGHK------EIVKLLLSKGADPNAKD-SDGRTPLHYAAENGHKEIVK 120
Query: 214 LLIKCKADTNLIVKVNQEPLLFFAIESNS--VKIVE 247
LL+ AD N + PL N VK++E
Sbjct: 121 LLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLE 156
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
V+ LLS G D N K DGRT L+ A G ++V LL+ GA+ N +D G TPLH A
Sbjct: 53 VKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA 111
Query: 132 YLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGA 186
G+K IVK LLSK AD S TP+ + +E EI+ +L + G
Sbjct: 112 ENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNE------EIVKLLEKQGG 160
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 9/157 (5%)
Query: 130 ACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVR 189
A GNK+ VK LL AD A S TP+ + N + EI+ +L+ GA+
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHK------EIVKLLLSKGADPN 64
Query: 190 EKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAF 249
K +PLH+A + +V+LL+ AD N + P L +A E+ +IV+
Sbjct: 65 AKD-SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTP-LHYAAENGHKEIVKLL 122
Query: 250 LNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKR 286
L SK D + SD D + L A GN +IV++L K+
Sbjct: 123 L-SKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 532 DEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
D VK +E+GA N S + L Y A G++EIV LLL GAD N K + G T LH A
Sbjct: 18 DRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYA 77
Query: 592 CRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
+ + IV+ LL GA + KD G+TPL +A
Sbjct: 78 AE-NGHKEIVKLLLSKGADPNAKD-SDGRTPLHYA 110
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 72/128 (56%), Gaps = 15/128 (11%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+I+K ++ + + NA+ D TPL +AA++ + K L+ KGA+ N A+
Sbjct: 51 EIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN-----------AK 99
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
SD R+ L YA ++ + E+VKLLL GAD N TS+ + PL +A + G+ +IVK L
Sbjct: 100 DSD--GRTPLHYAAEN-GHKEIVKLLLSKGADPN-TSDSDGRTPLDLAREHGNEEIVKLL 155
Query: 479 QNYGAQID 486
+ G ++
Sbjct: 156 EKQGGWLE 163
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ L+ENGA+ +PLH+A + +V+LL+ AD N + P L +A
Sbjct: 20 VKDLLENGADPN-ASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTP-LHYA 77
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYF 297
E+ +IV+ L SK D + D D + LH A G+ +IV++L+ + D N +
Sbjct: 78 AENGHKEIVKLLL-SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG 136
Query: 298 LPPMFFA 304
P+ A
Sbjct: 137 RTPLDLA 143
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 76/175 (43%), Gaps = 30/175 (17%)
Query: 437 NIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEA 496
N + VK LL +GAD N S+ + PL A ++G +IVK L + GA + K+ +
Sbjct: 16 NKDRVKDLLENGADPN-ASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN----AKDSDG 70
Query: 497 ARIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDE-VKKNIEDGACVNVSSERRGSAL 555
H E N + E VK + GA N + L
Sbjct: 71 RTPLHYAAE-----------------------NGHKEIVKLLLSKGADPNAKDSDGRTPL 107
Query: 556 IYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAY 610
Y A G++EIV LLL GAD N + G T L +A R H N+ IV+ L G +
Sbjct: 108 HYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLA-REHGNEEIVKLLEKQGGW 161
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 203 AVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDG 262
A N V+ L++ AD N + PL +A E+ +IV+ L SK D + D
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPL-HYAAENGHKEIVKLLL-SKGADPNAKDS 68
Query: 263 DLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQ 321
D + LH A G+ +IV++L+ + D NA++ P+ +A G H + + LL +
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENG--HKEIVKLLLSK 125
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G LI A G ++ V LL+NGAD N + G T LH A + + IV+ LL GA
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAE-NGHKEIVKLLLSKGADP 63
Query: 612 DMKDGKTGKTPLKHA 626
+ KD G+TPL +A
Sbjct: 64 NAKD-SDGRTPLHYA 77
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 7/118 (5%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSA 165
V +L+ +GA+VN D G+TPLHLA Y G+ IV+ LL ADV A ++ TP L ++A
Sbjct: 30 VRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTP-LHLAA 88
Query: 166 NMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
+ EI+ +L++NGA+V K +PLH A + +L +VE+L+K AD N
Sbjct: 89 HFGH-----LEIVEVLLKNGADVNAK-DDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 71 EVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
EV L++ G DVN G T L++A G ++V +L+ +GA+VN D G TPLHLA
Sbjct: 29 EVRILMANG-ADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLA 87
Query: 131 CYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVRE 190
+ G+ IV+ LL ADV AK +TP L ++AN EI+ +L++ GA+V
Sbjct: 88 AHFGHLEIVEVLLKNGADVNAKDDNGITP-LHLAANRGH-----LEIVEVLLKYGADVNA 141
Query: 191 KMPF 194
+ F
Sbjct: 142 QDKF 145
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V ++PLH A +L +VE+L+K AD N + PL A
Sbjct: 30 VRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPL-HLA 87
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
++IVE L + DV+ D + + LH A + G+L+IV++L+K D+NAQ+++
Sbjct: 88 AHFGHLEIVEVLLKN-GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKF 145
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN + + L A+ G+ EIV++LL NGADVN G T
Sbjct: 23 RAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGST 82
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPL 623
LH+A F + IV LL +GA + KD G TPL
Sbjct: 83 PLHLAAHF-GHLEIVEVLLKNGADVNAKD-DNGITPL 117
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMAC-RFHS 596
+++GA VN + L A G+ EIV++LL NGADVN K G T LH+A R H
Sbjct: 67 LKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHL 126
Query: 597 NDNIVRKLLHHGAYYDMKDGKTGKT 621
IV LL +GA + +D K GKT
Sbjct: 127 --EIVEVLLKYGADVNAQD-KFGKT 148
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 347 KVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNL 406
K++ + R D++ + ++ ++NA TPL AA L+ + L++ GA+VN
Sbjct: 17 KLLEAARAGRDDEV-RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA 75
Query: 407 TETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVA 466
+T S + H ++E+V++LL +GADVN + PL +A
Sbjct: 76 YDT--------------LGSTPLHLAAHFGHLEIVEVLLKNGADVN-AKDDNGITPLHLA 120
Query: 467 IQSGDFQIVKELQNYGAQIDKEN 489
G +IV+ L YGA ++ ++
Sbjct: 121 ANRGHLEIVEVLLKYGADVNAQD 143
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
VE LL G DVN K +G T L++A +G ++V +L+ +GA+VN +D+ G T ++
Sbjct: 96 VEVLLKNG-ADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 132 YLGNKNIVKFL 142
GN+++ + L
Sbjct: 155 NNGNEDLAEIL 165
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN G+T LH+A + + IV LL +GA
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAA-YWGHLEIVEVLLKNGADV 73
Query: 612 DMKDGKTGKTPL 623
+ D G TPL
Sbjct: 74 NAYD-TLGSTPL 84
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 15/143 (10%)
Query: 263 DLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQD 322
DL L +A G V++L+ D+NA + P+ A G H + E LL+
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWG--HLEIVEVLLKNG 70
Query: 323 SINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPL 382
+ +VN DT+ S + L +I++ ++ ++NA+ D+ ITPL
Sbjct: 71 A-DVNA--------YDTLGS---TPLHLAAHFGHL-EIVEVLLKNGADVNAKDDNGITPL 117
Query: 383 LFAAKHCDLQSAKYLIQKGANVN 405
AA L+ + L++ GA+VN
Sbjct: 118 HLAANRGHLEIVEVLLKYGADVN 140
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIA 500
V++L+ +GADVN ++ PL +A G +IV+ L GA ++ + L + A
Sbjct: 30 VRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAA 88
Query: 501 HSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAW 560
H + V+ +++GA VN + + L A
Sbjct: 89 HF--------------------------GHLEIVEVLLKNGADVNAKDDNGITPLHLAAN 122
Query: 561 KGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSND--NIVRKL 604
+G+ EIV++LL GADVN + G TA ++ + D I++KL
Sbjct: 123 RGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQKL 168
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 56/147 (38%), Positives = 83/147 (56%), Gaps = 8/147 (5%)
Query: 71 EVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
EV L++ G DVN K +DG T L++A +G ++V +L+ GA+VN +D+ GYTPLHLA
Sbjct: 17 EVRILMANG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 75
Query: 131 CYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVRE 190
G+ IV+ LL ADV AK TP L ++A EI+ +L++ GA+V
Sbjct: 76 AREGHLEIVEVLLKAGADVNAKDKDGYTP-LHLAAREGH-----LEIVEVLLKAGADVNA 129
Query: 191 KMPFTDFSPLHFAVVKKNLSVVELLIK 217
+ F +P A+ N + E+L K
Sbjct: 130 QDKFGK-TPFDLAIDNGNEDIAEVLQK 155
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 79/141 (56%), Gaps = 5/141 (3%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V K ++PLH A + +L +VE+L+K AD N K PL A
Sbjct: 18 VRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 76
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYF 297
E + ++IVE L + DV+ D D + LH A G+L+IV++L+K D+NAQ+++
Sbjct: 77 REGH-LEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 134
Query: 298 LPPMFFAIGMGRKHTHVAEYL 318
P AI G + +AE L
Sbjct: 135 KTPFDLAIDNGNE--DIAEVL 153
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN + + L A +G+ EIV++LL GADVN K G+T
Sbjct: 11 RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT 70
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
LH+A R + IV LL GA + KD K G TPL A
Sbjct: 71 PLHLAAR-EGHLEIVEVLLKAGADVNAKD-KDGYTPLHLA 108
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R + V+ ++ GA VN + + L A +G+ EIV++LL GADVN K G+T
Sbjct: 44 REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT 103
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
LH+A R + IV LL GA + +D K GKTP A
Sbjct: 104 PLHLAAR-EGHLEIVEVLLKAGADVNAQD-KFGKTPFDLA 141
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN K G+T LH+A R + IV LL GA
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADV 61
Query: 612 DMKDGKTGKTPLKHA 626
+ KD K G TPL A
Sbjct: 62 NAKD-KDGYTPLHLA 75
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 15/132 (11%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NA+ D TPL AA+ L+ + L++ GA+VN A
Sbjct: 15 DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-----------A 63
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+ D + L A + + ++E+V++LL GADVN +K PL +A + G +IV+
Sbjct: 64 KDKD--GYTPLHLAAR-EGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEV 119
Query: 478 LQNYGAQIDKEN 489
L GA ++ ++
Sbjct: 120 LLKAGADVNAQD 131
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 33/154 (21%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQI---DKENYLKNKEAA 497
V++L+ +GADVN +K PL +A + G +IV+ L GA + DK+ Y AA
Sbjct: 18 VRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 76
Query: 498 RIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIY 557
R H + V+ ++ GA VN + + L
Sbjct: 77 REGH-----------------------------LEIVEVLLKAGADVNAKDKDGYTPLHL 107
Query: 558 VAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
A +G+ EIV++LL GADVN + G T +A
Sbjct: 108 AAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 15/121 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+I++ ++ ++NA+ D TPL AA+ L+ + L++ GA+VN A+
Sbjct: 49 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-----------AK 97
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
D + L A + + ++E+V++LL GADVN +K + P +AI +G+ I + L
Sbjct: 98 DKD--GYTPLHLAAR-EGHLEIVEVLLKAGADVN-AQDKFGKTPFDLAIDNGNEDIAEVL 153
Query: 479 Q 479
Q
Sbjct: 154 Q 154
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 9/119 (7%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI-LAVS 164
V +L+ +GA+VN +D+ GYTPLHLA G+ IV+ LL ADV AK TP+ LA
Sbjct: 30 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 89
Query: 165 ANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
EI+ +L++ GA+V K ++PLH A + +L +VE+L+K AD N
Sbjct: 90 EGHL-------EIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDR 119
L A + EV L++ G DVN K +DG T L++A +G ++V +L+ GA+VN +
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 120 DEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI-LAVSANMSEDSTDTNEII 178
D+ GYTPLHLA G+ IV+ LL ADV AK TP+ LA EI+
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL-------EIV 129
Query: 179 SMLIENGANVREKMPF 194
+L++ GA+V + F
Sbjct: 130 EVLLKAGADVNAQDKF 145
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V K ++PLH A + +L +VE+L+K AD N K PL A
Sbjct: 30 VRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 88
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
E + ++IVE L + DV+ D D + LH A G+L+IV++L+K D+NAQ+++
Sbjct: 89 REGH-LEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 145
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 526 VRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGF 585
R+ + DEV+ + +GA VN + + L A +G+ EIV++LL GADVN K G+
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 81
Query: 586 TALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPL 623
T LH+A R + IV LL GA + KD K G TPL
Sbjct: 82 TPLHLAAR-EGHLEIVEVLLKAGADVNAKD-KDGYTPL 117
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN K G+T LH+A R + IV LL GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADV 73
Query: 612 DMKDGKTGKTPL 623
+ KD K G TPL
Sbjct: 74 NAKD-KDGYTPL 84
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 541 GACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNI 600
GA VN + + L A +G+ EIV++LL GADVN K G+T LH+A R + I
Sbjct: 70 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR-EGHLEI 128
Query: 601 VRKLLHHGAYYDMKDGKTGKT 621
V LL GA + +D K GKT
Sbjct: 129 VEVLLKAGADVNAQD-KFGKT 148
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 15/132 (11%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NA+ D TPL AA+ L+ + L++ GA+VN
Sbjct: 27 DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------ 74
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+ D + L A + + ++E+V++LL GADVN +K PL +A + G +IV+
Sbjct: 75 -AKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEV 131
Query: 478 LQNYGAQIDKEN 489
L GA ++ ++
Sbjct: 132 LLKAGADVNAQD 143
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L A + + VE LL G DVN K +DG T L++A +G ++V +L+ GA+VN
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFL 142
+D+ G T ++ GN+++ + L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 33/155 (21%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQI---DKENYLKNKEAA 497
V++L+ +GADVN +K PL +A + G +IV+ L GA + DK+ Y AA
Sbjct: 30 VRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 88
Query: 498 RIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIY 557
R H V+ ++ GA VN + + L
Sbjct: 89 REGHLEI-----------------------------VEVLLKAGADVNAKDKDGYTPLHL 119
Query: 558 VAWKGYEEIVDLLLDNGADVNFKSATGFTALHMAC 592
A +G+ EIV++LL GADVN + G TA ++
Sbjct: 120 AAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISI 154
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 48/157 (30%)
Query: 249 FLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMG 308
L + DV+ D D + LH A G+L+IV++L+K D+NA+++ P+ A G
Sbjct: 32 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 91
Query: 309 RKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRT 368
H + E LL+ +
Sbjct: 92 --HLEIVEVLLKAGA--------------------------------------------- 104
Query: 369 ENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVN 405
++NA+ D TPL AA+ L+ + L++ GA+VN
Sbjct: 105 -DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 15/121 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+I++ ++ ++NA+ D TPL AA+ L+ + L++ GA+VN
Sbjct: 61 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------- 107
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+ D + L A + + ++E+V++LL GADVN +K + ++I +G+ + + L
Sbjct: 108 AKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVN-AQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 479 Q 479
Q
Sbjct: 166 Q 166
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 76.6 bits (187), Expect = 5e-14, Method: Composition-based stats.
Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 8/147 (5%)
Query: 71 EVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
EV L++ G DVN K +DG T L++A +G ++V +L+ GA+VN +D+ GYTPLHLA
Sbjct: 17 EVRILMANG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLA 75
Query: 131 CYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVRE 190
G+ IV+ LL ADV AK TP L ++A EI+ +L++ GA+V
Sbjct: 76 AREGHLEIVEVLLKAGADVNAKDKDGYTP-LHLAAREGH-----LEIVEVLLKAGADVNA 129
Query: 191 KMPFTDFSPLHFAVVKKNLSVVELLIK 217
+ F +P A+ + + + E+L K
Sbjct: 130 QDKFGK-TPFDLAIREGHEDIAEVLQK 155
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 79/141 (56%), Gaps = 5/141 (3%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V K ++PLH A + +L +VE+L+K AD N K PL A
Sbjct: 18 VRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 76
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYF 297
E + ++IVE L + DV+ D D + LH A G+L+IV++L+K D+NAQ+++
Sbjct: 77 REGH-LEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 134
Query: 298 LPPMFFAIGMGRKHTHVAEYL 318
P AI G H +AE L
Sbjct: 135 KTPFDLAIREG--HEDIAEVL 153
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN + + L A +G+ EIV++LL GADVN K G+T
Sbjct: 11 RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT 70
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
LH+A R + IV LL GA + KD K G TPL A
Sbjct: 71 PLHLAAR-EGHLEIVEVLLKAGADVNAKD-KDGYTPLHLA 108
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R + V+ ++ GA VN + + L A +G+ EIV++LL GADVN K G+T
Sbjct: 44 REGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYT 103
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
LH+A R + IV LL GA + +D K GKTP A
Sbjct: 104 PLHLAAR-EGHLEIVEVLLKAGADVNAQD-KFGKTPFDLA 141
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN K G+T LH+A R + IV LL GA
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADV 61
Query: 612 DMKDGKTGKTPLKHA 626
+ KD K G TPL A
Sbjct: 62 NAKD-KDGYTPLHLA 75
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 15/132 (11%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NA+ D TPL AA+ L+ + L++ GA+VN A
Sbjct: 15 DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-----------A 63
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+ D + L A + + ++E+V++LL GADVN +K PL +A + G +IV+
Sbjct: 64 KDKD--GYTPLHLAAR-EGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEV 119
Query: 478 LQNYGAQIDKEN 489
L GA ++ ++
Sbjct: 120 LLKAGADVNAQD 131
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 33/156 (21%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQI---DKENYLKNKEAA 497
V++L+ +GADVN +K PL +A + G +IV+ L GA + DK+ Y AA
Sbjct: 18 VRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 76
Query: 498 RIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIY 557
R H + V+ ++ GA VN + + L
Sbjct: 77 REGH-----------------------------LEIVEVLLKAGADVNAKDKDGYTPLHL 107
Query: 558 VAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 593
A +G+ EIV++LL GADVN + G T +A R
Sbjct: 108 AAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIR 143
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 15/121 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+I++ ++ ++NA+ D TPL AA+ L+ + L++ GA+VN A+
Sbjct: 49 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-----------AK 97
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
D + L A + + ++E+V++LL GADVN +K + P +AI+ G I + L
Sbjct: 98 DKD--GYTPLHLAAR-EGHLEIVEVLLKAGADVN-AQDKFGKTPFDLAIREGHEDIAEVL 153
Query: 479 Q 479
Q
Sbjct: 154 Q 154
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 69/120 (57%), Gaps = 11/120 (9%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP--ILAV 163
V +L+ +GA+VN D+ G TPLHLA G+ IV+ LL ADV A M TP + A+
Sbjct: 30 VRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAAL 89
Query: 164 SANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
++ EI+ +L++NGA+V + F+PLH A +L +VE+L+K AD N
Sbjct: 90 YGHL--------EIVEVLLKNGADVNATDTYG-FTPLHLAADAGHLEIVEVLLKYGADVN 140
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDR 119
L A + EV L++ G DVN + G+T L++A ++G ++V +L+ HGA+VN
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 120 DEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI-LAVSANMSEDSTDTNEII 178
D+ G TPLHLA G+ IV+ LL ADV A + TP+ LA A EI+
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHL-------EIV 129
Query: 179 SMLIENGANVREKMPF 194
+L++ GA+V + F
Sbjct: 130 EVLLKYGADVNAQDKF 145
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 72/119 (60%), Gaps = 3/119 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V + + +PLH A +K +L +VE+L+K AD N K+ PL A
Sbjct: 30 VRILMANGADVNAE-DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAA 88
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
+ + ++IVE L + DV+ +D + LH A G+L+IV++L+K D+NAQ+++
Sbjct: 89 LYGH-LEIVEVLLKN-GADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKF 145
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 526 VRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGF 585
R+ + DEV+ + +GA VN + + L A KG+ EIV++LL +GADVN G
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGD 81
Query: 586 TALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLK-HAEAG 629
T LH+A + + IV LL +GA + D G TPL A+AG
Sbjct: 82 TPLHLAA-LYGHLEIVEVLLKNGADVNATD-TYGFTPLHLAADAG 124
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 15/132 (11%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NAE D TPL AA L+ + L++ GA+VN +
Sbjct: 27 DDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD--------- 77
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+ D A Y ++E+V++LL +GADVN T + PL +A +G +IV+
Sbjct: 78 KMGDTPLHLAALYG-----HLEIVEVLLKNGADVNAT-DTYGFTPLHLAADAGHLEIVEV 131
Query: 478 LQNYGAQIDKEN 489
L YGA ++ ++
Sbjct: 132 LLKYGADVNAQD 143
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN + +G T LH+A + IV LL HGA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAA-IKGHLEIVEVLLKHGADV 73
Query: 612 DMKDGKTGKTPL 623
+ D K G TPL
Sbjct: 74 NAAD-KMGDTPL 84
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 15/121 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+I++ ++ ++NA TPL AA + L+ + L++ GA+VN T+T
Sbjct: 61 EIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDT--------- 111
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+ F + L A ++E+V++LL +GADVN +K + ++I +G+ + + L
Sbjct: 112 ---YGF-TPLHLAAD-AGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 479 Q 479
Q
Sbjct: 166 Q 166
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 35/169 (20%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE---AA 497
V++L+ +GADVN + K PL +A G +IV+ L +GA ++ + + + AA
Sbjct: 30 VRILMANGADVNAEDDSGKT-PLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAA 88
Query: 498 RIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIY 557
H + V+ +++GA VN + + L
Sbjct: 89 LYGH-----------------------------LEIVEVLLKNGADVNATDTYGFTPLHL 119
Query: 558 VAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSND--NIVRKL 604
A G+ EIV++LL GADVN + G TA ++ + D I++KL
Sbjct: 120 AADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
VE LL G DVN G T L++A G ++V +L+ +GA+VN +D+ G T ++
Sbjct: 96 VEVLLKNG-ADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 132 YLGNKNIVKFL 142
GN+++ + L
Sbjct: 155 DNGNEDLAEIL 165
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 75.9 bits (185), Expect = 8e-14, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 74/132 (56%), Gaps = 7/132 (5%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
+GRT L++A G ++V LL+ GA+VN +D+ G TPLHLA G+ +VK LL AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 149 VRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKN 208
V AK TP+ + N E++ +L+E GA+V K +PLH A +
Sbjct: 61 VNAKDKNGRTPLHLAARN------GHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGH 113
Query: 209 LSVVELLIKCKA 220
L VV+LL++ A
Sbjct: 114 LEVVKLLLEAGA 125
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L A + + V+ LL G DVN K ++GRT L++A G ++V LL+ GA+VN
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEI 177
+D+ G TPLHLA G+ +VK LL ADV AK TP+ + N E+
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN------GHLEV 116
Query: 178 ISMLIENGA 186
+ +L+E GA
Sbjct: 117 VKLLLEAGA 125
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + VK +E GA VN + + L A G+ E+V LLL+ GADVN K G T
Sbjct: 11 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 70
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
LH+A R + + +V+ LL GA + KD K G+TPL A
Sbjct: 71 PLHLAAR-NGHLEVVKLLLEAGADVNAKD-KNGRTPLHLA 108
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 70/125 (56%), Gaps = 15/125 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+++K +++ ++NA+ + TPL AA++ L+ K L++ GA+VN
Sbjct: 16 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN------------- 62
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+ D R+ L A ++ ++E+VKLLL GADVN +K + PL +A ++G ++VK L
Sbjct: 63 AKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 479 QNYGA 483
GA
Sbjct: 121 LEAGA 125
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDV 257
+PLH A +L VV+LL++ AD N K + PL A + +++V+ L + DV
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL-HLAARNGHLEVVKLLLEA-GADV 61
Query: 258 SISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEY 317
+ D + + LH A G+L++V++L++ D+NA+++ P+ A G H V +
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HLEVVKL 119
Query: 318 LLQ 320
LL+
Sbjct: 120 LLE 122
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 27/151 (17%)
Query: 460 QKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAHSTTELEERXXXXXXXXXX 519
+ PL +A ++G ++VK L GA ++ K+K H
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNA----KDKNGRTPLH------------------ 40
Query: 520 XXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNF 579
R+ + VK +E GA VN + + L A G+ E+V LLL+ GADVN
Sbjct: 41 ----LAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 96
Query: 580 KSATGFTALHMACRFHSNDNIVRKLLHHGAY 610
K G T LH+A R + + +V+ LL GAY
Sbjct: 97 KDKNGRTPLHLAAR-NGHLEVVKLLLEAGAY 126
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 18/125 (14%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
TPL AA++ L+ K L++ GA+VN + D R+ L A ++ ++E
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-------------AKDKNGRTPLHLAARN-GHLE 49
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQI---DKENYLKNKEA 496
+VKLLL GADVN +K + PL +A ++G ++VK L GA + DK A
Sbjct: 50 VVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Query: 497 ARIAH 501
AR H
Sbjct: 109 ARNGH 113
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 7/118 (5%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSA 165
V +L+ +GA+VN D++G TPLHLA ++G+ IV+ LL ADV A+ + TP+
Sbjct: 30 VRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPL----- 84
Query: 166 NMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
+++ D+ EI+ +L++ GA+V + + +PLH A + +L +VE+L+K AD N
Sbjct: 85 HLAADNGHL-EIVEVLLKYGADVNAQDAY-GLTPLHLAADRGHLEIVEVLLKHGADVN 140
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 82/147 (55%), Gaps = 8/147 (5%)
Query: 71 EVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
EV L++ G DVN G T L++A G ++V +L+ HGA+VN RD G+TPLHLA
Sbjct: 29 EVRILMANG-ADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLA 87
Query: 131 CYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVRE 190
G+ IV+ LL ADV A+ + +TP+ +++ D EI+ +L+++GA+V
Sbjct: 88 ADNGHLEIVEVLLKYGADVNAQDAYGLTPL-----HLAADRGHL-EIVEVLLKHGADVNA 141
Query: 191 KMPFTDFSPLHFAVVKKNLSVVELLIK 217
+ F + ++ N + E+L K
Sbjct: 142 QDKFGK-TAFDISIDNGNEDLAEILQK 167
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN ++ + L AW G+ EIV++LL +GADVN + G+T
Sbjct: 23 RAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWT 82
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
LH+A + + IV LL +GA + +D G TPL A
Sbjct: 83 PLHLAAD-NGHLEIVEVLLKYGADVNAQDA-YGLTPLHLA 120
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V +PLH A + +VE+L+K AD N PL A
Sbjct: 30 VRILMANGADVNAHDD-QGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPL-HLA 87
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
++ ++IVE L DV+ D + LH A G+L+IV++L+K D+NAQ+++
Sbjct: 88 ADNGHLEIVEVLLKY-GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKF 145
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMAC-RFHS 596
++ GA VN + L A G+ EIV++LL GADVN + A G T LH+A R H
Sbjct: 67 LKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHL 126
Query: 597 NDNIVRKLLHHGAYYDMKDGKTGKT 621
IV LL HGA + +D K GKT
Sbjct: 127 --EIVEVLLKHGADVNAQD-KFGKT 148
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 212 VELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKA 271
V +L+ AD N PL A + +IVE L DV+ D D + LH A
Sbjct: 30 VRILMANGADVNAHDDQGSTPLHLAAWIGHP-EIVEVLLK-HGADVNARDTDGWTPLHLA 87
Query: 272 CHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQ 321
G+L+IV++L+K D+NAQ+ Y L P+ A R H + E LL+
Sbjct: 88 ADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLA--ADRGHLEIVEVLLKH 135
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN G T LH+A + + IV LL HGA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAA-WIGHPEIVEVLLKHGADV 73
Query: 612 DMKDGKTGKTPLKHA 626
+ +D G TPL A
Sbjct: 74 NARD-TDGWTPLHLA 87
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 15/121 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+I++ ++ ++NA D TPL AA + L+ + L++ GA+VN
Sbjct: 61 EIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN------------- 107
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+ D + L A + ++E+V++LL HGADVN +K + ++I +G+ + + L
Sbjct: 108 AQDAYGLTPLHLAAD-RGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 479 Q 479
Q
Sbjct: 166 Q 166
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NA D TPL AA + + L++ GA+VN A
Sbjct: 27 DDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-----------A 75
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
R +D + L A + ++E+V++LL +GADVN + PL +A G +IV+
Sbjct: 76 RDTDGW--TPLHLAADN-GHLEIVEVLLKYGADVN-AQDAYGLTPLHLAADRGHLEIVEV 131
Query: 478 LQNYGAQIDKEN 489
L +GA ++ ++
Sbjct: 132 LLKHGADVNAQD 143
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 375 GDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
G D+ LL AA+ + L+ GA+VN + Q + + L A
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGS-------------TPLHLAA-W 56
Query: 435 KNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
+ E+V++LL HGADVN + PL +A +G +IV+ L YGA ++ ++
Sbjct: 57 IGHPEIVEVLLKHGADVN-ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQD 110
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 27/151 (17%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIA 500
V++L+ +GADVN ++ PL +A G +IV+ L +GA ++ AR
Sbjct: 30 VRILMANGADVNAHDDQ-GSTPLHLAAWIGHPEIVEVLLKHGADVN----------ARDT 78
Query: 501 HSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAW 560
T L + + V+ ++ GA VN + L A
Sbjct: 79 DGWTPLH----------------LAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAAD 122
Query: 561 KGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
+G+ EIV++LL +GADVN + G TA ++
Sbjct: 123 RGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSA 165
V +L+ +GA+VN D GYTPLHLA G+ IV+ LL ADV A +TP+ +A
Sbjct: 30 VRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAA 89
Query: 166 NMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
T EI+ +L+++GA+V +PLH A +L +VE+L+K AD N
Sbjct: 90 ------TGHLEIVEVLLKHGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V ++PLH A +L +VE+L+K AD N PL A
Sbjct: 30 VRILMANGADVN-ATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPL-HLA 87
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
+ ++IVE L DV+ D D ++ LH A G+L+IV++L+K D+NAQ+++
Sbjct: 88 AATGHLEIVEVLL-KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKF 145
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDR 119
L A + EV L++ G DVN DG T L++A G ++V +L+ +GA+VN
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 120 DEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIIS 179
D G TPLHLA G+ IV+ LL ADV A + TP L ++A EI+
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTP-LHLAAKYGH-----LEIVE 130
Query: 180 MLIENGANVREKMPF 194
+L+++GA+V + F
Sbjct: 131 VLLKHGADVNAQDKF 145
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L A + + VE LL G DVN G T L++A G ++V +L+ HGA+VN
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNG-ADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVN 107
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
D G+TPLHLA G+ IV+ LL ADV A+
Sbjct: 108 AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ 142
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 526 VRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGF 585
R+ + DEV+ + +GA VN + + L A G+ EIV++LL NGADVN TG
Sbjct: 22 ARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGI 81
Query: 586 TALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPL 623
T LH+A + IV LL HGA + D G TPL
Sbjct: 82 TPLHLAAAT-GHLEIVEVLLKHGADVNAYD-NDGHTPL 117
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 15/132 (11%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NA +D TPL AA + L+ + L++ GA+VN
Sbjct: 27 DDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN------------ 74
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+SD + L A ++E+V++LL HGADVN N PL +A + G +IV+
Sbjct: 75 -ASDLTGITPLHLAAA-TGHLEIVEVLLKHGADVNAYDND-GHTPLHLAAKYGHLEIVEV 131
Query: 478 LQNYGAQIDKEN 489
L +GA ++ ++
Sbjct: 132 LLKHGADVNAQD 143
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+++GA VN S + L A G+ EIV++LL +GADVN G T LH+A ++ +
Sbjct: 67 LKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKY-GH 125
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKT 621
IV LL HGA + +D K GKT
Sbjct: 126 LEIVEVLLKHGADVNAQD-KFGKT 148
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 48/157 (30%)
Query: 249 FLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMG 308
L + DV+ +D D + LH A G+L+IV++L+K D+NA + + P+ A G
Sbjct: 32 ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATG 91
Query: 309 RKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRT 368
H + E LL+ +
Sbjct: 92 --HLEIVEVLLKHGA--------------------------------------------- 104
Query: 369 ENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVN 405
++NA +D TPL AAK+ L+ + L++ GA+VN
Sbjct: 105 -DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 47 INSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMV 106
+N+S + L +A +I VE LL G DVN DG T L++A G ++V
Sbjct: 73 VNASDLTGITPLHLAAATGHLEI--VEVLLKHG-ADVNAYDNDGHTPLHLAAKYGHLEIV 129
Query: 107 TLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFL 142
+L+ HGA+VN +D+ G T ++ GN+++ + L
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN G+T LH+A + + IV LL +GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAAS-NGHLEIVEVLLKNGADV 73
Query: 612 DMKDGKTGKTPLKHAEA 628
+ D TG TPL A A
Sbjct: 74 NASD-LTGITPLHLAAA 89
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 27/152 (17%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIA 500
V++L+ +GADVN T N PL +A +G +IV+ L GA ++ + L +A
Sbjct: 30 VRILMANGADVNATDND-GYTPLHLAASNGHLEIVEVLLKNGADVNASD-LTGITPLHLA 87
Query: 501 HSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAW 560
+T LE V+ ++ GA VN + L A
Sbjct: 88 AATGHLEI-------------------------VEVLLKHGADVNAYDNDGHTPLHLAAK 122
Query: 561 KGYEEIVDLLLDNGADVNFKSATGFTALHMAC 592
G+ EIV++LL +GADVN + G TA ++
Sbjct: 123 YGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 8/147 (5%)
Query: 71 EVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
EV L++ G DVN G T L++A G ++V +L+ HGA+V+ D GYTPLHLA
Sbjct: 29 EVRILMANG-ADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLA 87
Query: 131 CYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVRE 190
Y G+ IV+ LL ADV A S +TP L ++A EI+ +L+++GA+V
Sbjct: 88 AYWGHLEIVEVLLKNGADVNAMDSDGMTP-LHLAAKWG-----YLEIVEVLLKHGADVNA 141
Query: 191 KMPFTDFSPLHFAVVKKNLSVVELLIK 217
+ F + ++ N + E+L K
Sbjct: 142 QDKFGK-TAFDISIDNGNEDLAEILQK 167
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 65/118 (55%), Gaps = 7/118 (5%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSA 165
V +L+ +GA+VN D G TPLHLA Y G+ IV+ LL ADV A TP L ++A
Sbjct: 30 VRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTP-LHLAA 88
Query: 166 NMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
EI+ +L++NGA+V M +PLH A L +VE+L+K AD N
Sbjct: 89 YWGH-----LEIVEVLLKNGADV-NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V T +PLH A +L +VE+L+K AD + PL A
Sbjct: 30 VRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPL-HLA 87
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
++IVE L + DV+ D D + LH A G L+IV++L+K D+NAQ+++
Sbjct: 88 AYWGHLEIVEVLLKN-GADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKF 145
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN + + L A+ G+ EIV++LL +GADV+ G+T
Sbjct: 23 RAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYT 82
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
LH+A + + IV LL +GA + D G TPL A
Sbjct: 83 PLHLAA-YWGHLEIVEVLLKNGADVNAMDSD-GMTPLHLA 120
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
++ GA V+ S + L A+ G+ EIV++LL NGADVN + G T LH+A ++
Sbjct: 67 LKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYL 126
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKT 621
+ IV LL HGA + +D K GKT
Sbjct: 127 E-IVEVLLKHGADVNAQD-KFGKT 148
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 33/154 (21%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN---YLKNKEAA 497
V++L+ +GADVN N PL +A SG +IV+ L +GA +D + Y AA
Sbjct: 30 VRILMANGADVNAADNT-GTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAA 88
Query: 498 RIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIY 557
H + V+ +++GA VN + L
Sbjct: 89 YWGH-----------------------------LEIVEVLLKNGADVNAMDSDGMTPLHL 119
Query: 558 VAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
A GY EIV++LL +GADVN + G TA ++
Sbjct: 120 AAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 62 SAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDE 121
+A W + + VE LL G DVN DG T L++A G ++V +L+ HGA+VN +D+
Sbjct: 87 AAYWGH-LEIVEVLLKNG-ADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDK 144
Query: 122 KGYTPLHLACYLGNKNIVKFL 142
G T ++ GN+++ + L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN TG T LH+A + + IV LL HGA
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAA-YSGHLEIVEVLLKHGADV 73
Query: 612 DMKDGKTGKTPLKHA 626
D D G TPL A
Sbjct: 74 DASD-VFGYTPLHLA 87
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 15/132 (11%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NA + TPL AA L+ + L++ GA+V+
Sbjct: 27 DDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD------------ 74
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+SD + L A + ++E+V++LL +GADVN + PL +A + G +IV+
Sbjct: 75 -ASDVFGYTPLHLAA-YWGHLEIVEVLLKNGADVN-AMDSDGMTPLHLAAKWGYLEIVEV 131
Query: 478 LQNYGAQIDKEN 489
L +GA ++ ++
Sbjct: 132 LLKHGADVNAQD 143
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 212 VELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKA 271
V +L+ AD N PL A S ++IVE L DV SD + LH A
Sbjct: 30 VRILMANGADVNAADNTGTTPL-HLAAYSGHLEIVEVLLK-HGADVDASDVFGYTPLHLA 87
Query: 272 CHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQ 321
+ G+L+IV++L+K D+NA + + P+ A G + + E LL+
Sbjct: 88 AYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWG--YLEIVEVLLKH 135
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 375 GDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
G D+ LL AA+ + L+ GA+VN ++D + L A +
Sbjct: 11 GSDLGRKLLEAARAGQDDEVRILMANGADVN-------------AADNTGTTPLHLAA-Y 56
Query: 435 KNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQID 486
++E+V++LL HGADV D S+ PL +A G +IV+ L GA ++
Sbjct: 57 SGHLEIVEVLLKHGADV-DASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVN 107
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 15/121 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+I++ ++ +++A TPL AA L+ + L++ GA+VN A SD
Sbjct: 61 EIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVN------AMDSDGM 114
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+ L A K +E+V++LL HGADVN +K + ++I +G+ + + L
Sbjct: 115 TP-------LHLAAKW-GYLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 479 Q 479
Q
Sbjct: 166 Q 166
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 7/134 (5%)
Query: 83 VNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFL 142
VN QDG + L++A L G ++ LL+ HGAN R+ PLHLAC G+ +VK L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 143 LSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHF 202
L A K TP++ S +E++++L+++GA++ + + LH
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYAC------SGGHHELVALLLQHGASINASNNKGNTA-LHE 191
Query: 203 AVVKKNLSVVELLI 216
AV++K++ VVELL+
Sbjct: 192 AVIEKHVFVVELLL 205
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 541 GACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNI 600
G VNV+S+ S L A G +++ LLL +GA+ ++A LH+AC+ + +
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ-QGHFQV 134
Query: 601 VRKLLHHGAYYDMKDGKTGKTPLKHAEAG 629
V+ LL A + KD +G TPL +A +G
Sbjct: 135 VKCLLDSNAKPNKKD-LSGNTPLIYACSG 162
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 553 SALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA 609
+ LIY G+ E+V LLL +GA +N + G TALH A + +V LL HGA
Sbjct: 154 TPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV-IEKHVFVVELLLLHGA 209
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDV 257
SPLH A + ++ LL+K A+ +Q L A + ++V+ L+S N
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVVKCLLDS-NAKP 145
Query: 258 SISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEY 317
+ D N+ L AC G+ ++V +L++ INA N + A+ KH V E
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV--IEKHVFVVEL 203
Query: 318 LL 319
LL
Sbjct: 204 LL 205
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 426 SALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQI 485
S L A H +++ LLL HGA+ N + PL +A Q G FQ+VK L + A+
Sbjct: 88 SPLHVAALH-GRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
Query: 486 DKENYLKNKEAARIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVN 545
+K++ N T L ++ V ++ GA +N
Sbjct: 146 NKKDLSGN----------TPL----------------IYACSGGHHELVALLLQHGASIN 179
Query: 546 VSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
S+ + +AL + + +V+LLL +GA V + TA+ A
Sbjct: 180 ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 27/126 (21%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
+N D +PL AA H L++ GAN + AR++D L
Sbjct: 78 GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-----------AGARNADQAV--PLH 124
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQK------PLAVAIQSGDFQIVKELQNYGA 483
AC+ + + ++VK LL D++ KP +K PL A G ++V L +GA
Sbjct: 125 LACQ-QGHFQVVKCLL-------DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA 176
Query: 484 QIDKEN 489
I+ N
Sbjct: 177 SINASN 182
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
++ GA + + L +G+ ++V LLD+ A N K +G T L AC +
Sbjct: 106 LKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG-GH 164
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
+V LL HGA + + K G T L A
Sbjct: 165 HELVALLLQHGASINASNNK-GNTALHEA 192
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
Q++K ++D N + TPL++A + L+Q GA++N + +
Sbjct: 133 QVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKG------- 185
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVN 452
+AL A K ++ +V+LLLLHGA V
Sbjct: 186 ------NTALHEAVIEK-HVFVVELLLLHGASVQ 212
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 49/124 (39%), Positives = 71/124 (57%), Gaps = 7/124 (5%)
Query: 71 EVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
EV L++ G D N GRT L+MA G ++V +L+ +GA+VN D G TPLHLA
Sbjct: 17 EVRILMANG-ADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLA 75
Query: 131 CYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVRE 190
LG+ IV+ LL ADV AK + +TP L ++A EI+ +L+++GA+V
Sbjct: 76 ASLGHLEIVEVLLKYGADVNAKDATGITP-LYLAAYWGH-----LEIVEVLLKHGADVNA 129
Query: 191 KMPF 194
+ F
Sbjct: 130 QDKF 133
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA N + L A G+ EIV++LL NGADVN G T
Sbjct: 11 RAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTT 70
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPL 623
LH+A + IV LL +GA + KD TG TPL
Sbjct: 71 PLHLAASL-GHLEIVEVLLKYGADVNAKDA-TGITPL 105
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+ + +PLH A +L +VE+L++ AD N V N L A
Sbjct: 18 VRILMANGADANAYDHYGR-TPLHMAAAVGHLEIVEVLLRNGADVN-AVDTNGTTPLHLA 75
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
++IVE L DV+ D + L+ A + G+L+IV++L+K D+NAQ+++
Sbjct: 76 ASLGHLEIVEVLLKY-GADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKF 133
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+ +GA VN + L A G+ EIV++LL GADVN K ATG T L++A + +
Sbjct: 55 LRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAA-YWGH 113
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKT 621
IV LL HGA + +D K GKT
Sbjct: 114 LEIVEVLLKHGADVNAQD-KFGKT 136
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
VE LL G DVN K G T LY+A G ++V +L+ HGA+VN +D+ G T ++
Sbjct: 84 VEVLLKYG-ADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 142
Query: 132 YLGNKNIVKFL 142
+GN+++ + L
Sbjct: 143 DIGNEDLAEIL 153
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 212 VELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKA 271
V +L+ AD N + PL A ++IVE L + DV+ D + + LH A
Sbjct: 18 VRILMANGADANAYDHYGRTPL-HMAAAVGHLEIVEVLLRN-GADVNAVDTNGTTPLHLA 75
Query: 272 CHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQ 321
+G+L+IV++L+K D+NA++ + P++ A G H + E LL+
Sbjct: 76 ASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWG--HLEIVEVLLKH 123
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 15/110 (13%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
TPL AA L+ + L++ GA+VN +T + L A ++E
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT-------------TPLHLAAS-LGHLE 82
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
+V++LL +GADVN + PL +A G +IV+ L +GA ++ ++
Sbjct: 83 IVEVLLKYGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQD 131
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 263 DLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQD 322
DL L +A G V++L+ D NA + Y P+ A +G H + E LL+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVG--HLEIVEVLLRNG 58
Query: 323 SINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPL 382
+ +VN L SL +I++ ++ ++NA+ ITPL
Sbjct: 59 A-DVNAVDTNGTTPLHLAASLGHL------------EIVEVLLKYGADVNAKDATGITPL 105
Query: 383 LFAAKHCDLQSAKYLIQKGANVN 405
AA L+ + L++ GA+VN
Sbjct: 106 YLAAYWGHLEIVEVLLKHGADVN 128
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGAD N G T LHMA + IV LL +GA
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAV-GHLEIVEVLLRNGADV 61
Query: 612 DMKDGKTGKTPLKHAEA 628
+ D G TPL A +
Sbjct: 62 NAVD-TNGTTPLHLAAS 77
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 27/158 (17%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIA 500
V++L+ +GAD N + + PL +A G +IV+ L GA ++ + +A
Sbjct: 18 VRILMANGADAN-AYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD-TNGTTPLHLA 75
Query: 501 HSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAW 560
S LE V+ ++ GA VN + L A+
Sbjct: 76 ASLGHLEI-------------------------VEVLLKYGADVNAKDATGITPLYLAAY 110
Query: 561 KGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSND 598
G+ EIV++LL +GADVN + G TA ++ + D
Sbjct: 111 WGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNED 148
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 15/121 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+I++ ++ ++NA + TPL AA L+ + L++ GA+VN
Sbjct: 49 EIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN------------- 95
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+ D + L Y + ++E+V++LL HGADVN +K + ++I G+ + + L
Sbjct: 96 AKDATGITPL-YLAAYWGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDIGNEDLAEIL 153
Query: 479 Q 479
Q
Sbjct: 154 Q 154
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP--ILAV 163
V +LI +GA+VN D G TPLHLA G+ IV+ LL ADV A TP + A+
Sbjct: 30 VRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAM 89
Query: 164 SANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
+ ++ EI+ +L++ GA+V T +PLH A + +L +VE+L+K AD N
Sbjct: 90 TGHL--------EIVEVLLKYGADVN-AFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +LI NGA+V + T +PLH A V +L +VE+L+K AD + PL A
Sbjct: 30 VRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAA 88
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
+ + ++IVE L DV+ D ++ LH A G+L+IV++L+K D+NAQ+++
Sbjct: 89 M-TGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKF 145
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 26/157 (16%)
Query: 130 ACYLGNKNIVKFLLSKKADVRAKCSMMVTPI--LAVSANMSEDSTDTNEIISMLIENGAN 187
A G + V+ L++ ADV A + +TP+ AVS ++ EI+ +L+++GA+
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHL--------EIVEVLLKHGAD 72
Query: 188 VREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVE 247
V + F+PLH A + +L +VE+L+K AD N P L A + ++IVE
Sbjct: 73 V-DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTP-LHLAADEGHLEIVE 130
Query: 248 AFL------NSKN------FDVSISDGDLNSLLHKAC 272
L N+++ FD+SI +G N L K+C
Sbjct: 131 VLLKYGADVNAQDKFGKTAFDISIDNG--NEDLAKSC 165
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ I +GA VN + L A G+ EIV++LL +GADV+ GFT
Sbjct: 23 RAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFT 82
Query: 587 ALHMACRFHSNDNIVRKLLHHGA---YYDMKDGKTGKTPL 623
LH+A + IV LL +GA +DM TG TPL
Sbjct: 83 PLHLAA-MTGHLEIVEVLLKYGADVNAFDM----TGSTPL 117
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ +I ++NA + +TPL AA L+ + L++ GA+V+
Sbjct: 27 DDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD------------ 74
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
++D + L A ++E+V++LL +GADVN + PL +A G +IV+
Sbjct: 75 -AADVYGFTPLHLAAM-TGHLEIVEVLLKYGADVN-AFDMTGSTPLHLAADEGHLEIVEV 131
Query: 478 LQNYGAQIDKEN 489
L YGA ++ ++
Sbjct: 132 LLKYGADVNAQD 143
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN TG T LH+A + IV LL HGA
Sbjct: 15 GKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAA-VSGHLEIVEVLLKHGADV 73
Query: 612 DMKDGKTGKTPL 623
D D G TPL
Sbjct: 74 DAAD-VYGFTPL 84
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 541 GACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNI 600
GA V+ + + L A G+ EIV++LL GADVN TG T LH+A + I
Sbjct: 70 GADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAAD-EGHLEI 128
Query: 601 VRKLLHHGAYYDMKDGKTGKT 621
V LL +GA + +D K GKT
Sbjct: 129 VEVLLKYGADVNAQD-KFGKT 148
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 27/151 (17%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIA 500
V++L+ +GADVN N PL +A SG +IV+ L +GA +D + + +A
Sbjct: 30 VRILIANGADVNAVDNT-GLTPLHLAAVSGHLEIVEVLLKHGADVDAAD-VYGFTPLHLA 87
Query: 501 HSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAW 560
T LE V+ ++ GA VN + L A
Sbjct: 88 AMTGHLEI-------------------------VEVLLKYGADVNAFDMTGSTPLHLAAD 122
Query: 561 KGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
+G+ EIV++LL GADVN + G TA ++
Sbjct: 123 EGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
T L A + VE LL G DVN G T L++A +G ++V +L+ +GA+V
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYG-ADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Query: 117 NDRDEKGYTPLHLACYLGNKNIVK 140
N +D+ G T ++ GN+++ K
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAK 163
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 249 FLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMG 308
L + DV+ D + LH A G+L+IV++L+K D++A + Y P+ A G
Sbjct: 32 ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTG 91
Query: 309 RKHTHVAEYLLQ 320
H + E LL+
Sbjct: 92 --HLEIVEVLLK 101
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 7/136 (5%)
Query: 88 QDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKA 147
QD L A G V +L+ +GA+VN D+ G TPLHLA G IV+ LL A
Sbjct: 4 QDLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
Query: 148 DVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKK 207
DV A S +TP+ + + EI+ +L+++GA+V ++PLH A +
Sbjct: 64 DVNASDSAGITPLHLAAYD------GHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSG 116
Query: 208 NLSVVELLIKCKADTN 223
L +VE+L+K AD N
Sbjct: 117 QLEIVEVLLKHGADVN 132
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 71 EVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
EV L++ G DVN +G T L++A G ++V +L+ +GA+VN D G TPLHLA
Sbjct: 21 EVRILMANG-ADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLA 79
Query: 131 CYLGNKNIVKFLLSKKADVRAKCSMMVTP--ILAVSANMSEDSTDTNEIISMLIENGANV 188
Y G+ IV+ LL ADV A TP + A+S + EI+ +L+++GA+V
Sbjct: 80 AYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQL--------EIVEVLLKHGADV 131
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 4/122 (3%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
LT L A + ++ VE LL G DVN G T L++A G ++V +L+ HGA+V
Sbjct: 40 LTPLHLAAANGQLEIVEVLLKNG-ADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV 98
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNE 176
N D G+TPLHLA G IV+ LL ADV A+ ++ +T A ++++ D E
Sbjct: 99 NAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLT---AFDISINQGQEDLAE 155
Query: 177 II 178
I+
Sbjct: 156 IL 157
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 532 DEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
DEV+ + +GA VN + + + L A G EIV++LL NGADVN + G T LH+A
Sbjct: 20 DEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLA 79
Query: 592 CRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
+ + IV LL HGA + D + G TPL A
Sbjct: 80 A-YDGHLEIVEVLLKHGADVNAYD-RAGWTPLHLA 112
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 15/134 (11%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NA D+ +TPL AA + L+ + L++ GA+VN
Sbjct: 19 DDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN------------ 66
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+SD + L A + ++E+V++LL HGADVN ++ PL +A SG +IV+
Sbjct: 67 -ASDSAGITPLHLAA-YDGHLEIVEVLLKHGADVN-AYDRAGWTPLHLAALSGQLEIVEV 123
Query: 478 LQNYGAQIDKENYL 491
L +GA ++ ++ L
Sbjct: 124 LLKHGADVNAQDAL 137
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 178 ISMLIENGANVREKMPFTD---FSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLL 234
+ +L+ NGA+V TD +PLH A L +VE+L+K AD N PL
Sbjct: 22 VRILMANGADVNA----TDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLH 77
Query: 235 FFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQN 294
A + + ++IVE L DV+ D + LH A G L+IV++L+K D+NAQ+
Sbjct: 78 LAAYDGH-LEIVEVLLK-HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQD 135
Query: 295 RYFLPPMFFAIGMGRK 310
L +I G++
Sbjct: 136 ALGLTAFDISINQGQE 151
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 22/154 (14%)
Query: 130 ACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVR 189
A G + V+ L++ ADV A +TP+ +AN EI+ +L++NGA+V
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAAN------GQLEIVEVLLKNGADVN 66
Query: 190 EKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAF 249
+PLH A +L +VE+L+K AD N + PL A+ S ++IVE
Sbjct: 67 ASDS-AGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAAL-SGQLEIVEVL 124
Query: 250 L------NSKN------FDVSISDG--DLNSLLH 269
L N+++ FD+SI+ G DL +L
Sbjct: 125 LKHGADVNAQDALGLTAFDISINQGQEDLAEILQ 158
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+++GA VN S + L A+ G+ EIV++LL +GADVN G+T LH+A
Sbjct: 59 LKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAA-LSGQ 117
Query: 598 DNIVRKLLHHGAYYDMKDG 616
IV LL HGA + +D
Sbjct: 118 LEIVEVLLKHGADVNAQDA 136
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 27/151 (17%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIA 500
V++L+ +GADVN T + PL +A +G +IV+ L GA ++ + +
Sbjct: 22 VRILMANGADVNATDDN-GLTPLHLAAANGQLEIVEVLLKNGADVNASD----------S 70
Query: 501 HSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAW 560
T L + V+ ++ GA VN + L A
Sbjct: 71 AGITPLH----------------LAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAAL 114
Query: 561 KGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
G EIV++LL +GADVN + A G TA ++
Sbjct: 115 SGQLEIVEVLLKHGADVNAQDALGLTAFDIS 145
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 212 VELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKA 271
V +L+ AD N PL A + ++IVE L + DV+ SD + LH A
Sbjct: 22 VRILMANGADVNATDDNGLTPL-HLAAANGQLEIVEVLLKN-GADVNASDSAGITPLHLA 79
Query: 272 CHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQ 321
+ G+L+IV++L+K D+NA +R P+ A G+ + E LL+
Sbjct: 80 AYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQ--LEIVEVLLKH 127
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN G T LH+A + IV LL +GA
Sbjct: 7 GKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAA-NGQLEIVEVLLKNGADV 65
Query: 612 DMKDGKTGKTPLKHA 626
+ D G TPL A
Sbjct: 66 NASD-SAGITPLHLA 79
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V + FT ++PLH A +L +VE+L+K AD N + PL A
Sbjct: 30 VRILMANGADVNAR-DFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPL-HLA 87
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
++IVE L + DV+ SD + LH A G+L+IV++L+K D+NAQ+++
Sbjct: 88 ARRGHLEIVEVLLKN-GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKF 145
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
VE LL G DVN K G T L++A +G ++V +L+ +GA+VN D G+TPLHLA
Sbjct: 63 VEVLLKNG-ADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAA 121
Query: 132 YLGNKNIVKFLLSKKADVRAK 152
G+ IV+ LL ADV A+
Sbjct: 122 KRGHLEIVEVLLKNGADVNAQ 142
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 526 VRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGF 585
R+ + DEV+ + +GA VN + L A G+ EIV++LL NGADVN K + G
Sbjct: 22 ARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGV 81
Query: 586 TALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPL 623
T LH+A R + IV LL +GA + D G TPL
Sbjct: 82 TPLHLAAR-RGHLEIVEVLLKNGADVNASD-SHGFTPL 117
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+++GA VN + L A +G+ EIV++LL NGADVN + GFT LH+A + +
Sbjct: 67 LKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAK-RGH 125
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKT 621
IV LL +GA + +D K GKT
Sbjct: 126 LEIVEVLLKNGADVNAQD-KFGKT 148
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN + TG+T LH+A F + IV LL +GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHF-GHLEIVEVLLKNGADV 73
Query: 612 DMKDGKTGKTPL 623
+ KD G TPL
Sbjct: 74 NAKD-SLGVTPL 84
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIA 500
V++L+ +GADVN + PL +A G +IV+ L GA ++ ++ L
Sbjct: 30 VRILMANGADVN-ARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSL--------- 79
Query: 501 HSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAW 560
T L R + V+ +++GA VN S + L A
Sbjct: 80 -GVTPLH----------------LAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAK 122
Query: 561 KGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSND--NIVRKL 604
+G+ EIV++LL NGADVN + G TA ++ + D I++KL
Sbjct: 123 RGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NA TPL AA L+ + L++ GA+VN
Sbjct: 27 DDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN------------ 74
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+ D + L A + + ++E+V++LL +GADVN S+ PL +A + G +IV+
Sbjct: 75 -AKDSLGVTPLHLAAR-RGHLEIVEVLLKNGADVN-ASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 478 LQNYGAQIDKEN 489
L GA ++ ++
Sbjct: 132 LLKNGADVNAQD 143
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 15/121 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+I++ ++ ++NA+ +TPL AA+ L+ + L++ GA+VN
Sbjct: 61 EIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN------------- 107
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+SD + L A K + ++E+V++LL +GADVN +K + ++I +G+ + + L
Sbjct: 108 ASDSHGFTPLHLAAK-RGHLEIVEVLLKNGADVN-AQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 479 Q 479
Q
Sbjct: 166 Q 166
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 48/157 (30%)
Query: 249 FLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMG 308
L + DV+ D + LH A H G+L+IV++L+K D+NA++ + P+ A
Sbjct: 32 ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLA--AR 89
Query: 309 RKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRT 368
R H + E LL+ +
Sbjct: 90 RGHLEIVEVLLKNGA--------------------------------------------- 104
Query: 369 ENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVN 405
++NA TPL AAK L+ + L++ GA+VN
Sbjct: 105 -DVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 7/118 (5%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSA 165
V +L+ +GA+VN D G TPLHLA G+ IV+ LL ADV A M TP L ++A
Sbjct: 30 VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTP-LHLAA 88
Query: 166 NMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
+ EI+ +L+++GA+V + D +PLH A + +L +VE+L+K AD N
Sbjct: 89 LIGH-----LEIVEVLLKHGADVNAVDTWGD-TPLHLAAIMGHLEIVEVLLKHGADVN 140
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 71 EVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
EV L++ G DVN G T L++A G ++V +L+ HGA+VN D G TPLHLA
Sbjct: 29 EVRILMANG-ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLA 87
Query: 131 CYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVRE 190
+G+ IV+ LL ADV A + TP L ++A M EI+ +L+++GA+V
Sbjct: 88 ALIGHLEIVEVLLKHGADVNAVDTWGDTP-LHLAAIMGH-----LEIVEVLLKHGADVNA 141
Query: 191 KMPF 194
+ F
Sbjct: 142 QDKF 145
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V + +PLH A +L +VE+L+K AD N I + PL A
Sbjct: 30 VRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAA 88
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
+ + ++IVE L DV+ D ++ LH A +G+L+IV++L+K D+NAQ+++
Sbjct: 89 LIGH-LEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKF 145
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN + + L A G+ EIV++LL +GADVN G T
Sbjct: 23 RAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGST 82
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
LH+A + IV LL HGA + D G TPL A
Sbjct: 83 PLHLAALI-GHLEIVEVLLKHGADVNAVD-TWGDTPLHLA 120
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN A+G T LH+A + + IV LL HGA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATY-GHLEIVEVLLKHGADV 73
Query: 612 DMKDGKTGKTPLKHA 626
+ D G TPL A
Sbjct: 74 NAID-IMGSTPLHLA 87
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NA +TPL AA + L+ + L++ GA+VN D
Sbjct: 27 DDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI--------DI 78
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
S +AL ++E+V++LL HGADVN + PL +A G +IV+
Sbjct: 79 MGSTPLHLAAL------IGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEV 131
Query: 478 LQNYGAQIDKEN 489
L +GA ++ ++
Sbjct: 132 LLKHGADVNAQD 143
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
++ GA VN + L A G+ EIV++LL +GADVN G T LH+A +
Sbjct: 67 LKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAA-IMGH 125
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKT 621
IV LL HGA + +D K GKT
Sbjct: 126 LEIVEVLLKHGADVNAQD-KFGKT 148
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
VE LL G DVN G T L++A + G ++V +L+ HGA+VN +D+ G T ++
Sbjct: 96 VEVLLKHG-ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 132 YLGNKNIVKFL 142
GN+++ + L
Sbjct: 155 DNGNEDLAEIL 165
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 33/154 (21%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE---AA 497
V++L+ +GADVN T + PL +A G +IV+ L +GA ++ + + + AA
Sbjct: 30 VRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAA 88
Query: 498 RIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIY 557
I H + V+ ++ GA VN + L
Sbjct: 89 LIGH-----------------------------LEIVEVLLKHGADVNAVDTWGDTPLHL 119
Query: 558 VAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
A G+ EIV++LL +GADVN + G TA ++
Sbjct: 120 AAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 15/112 (13%)
Query: 375 GDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
G D+ LL AA+ + L+ GA+VN T+ + L A +
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNATDASGL-------------TPLHLAATY 57
Query: 435 KNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQID 486
++E+V++LL HGADVN + PL +A G +IV+ L +GA ++
Sbjct: 58 -GHLEIVEVLLKHGADVN-AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 69/133 (51%), Gaps = 3/133 (2%)
Query: 21 SYRHHHLFSEIMFSEEDAFGYFLQGIINSSSAKSVE-LTLLCSAVWDNKIREVEFLLSTG 79
SY L M E+A ++ + K +E T L AV +N++ E LLS G
Sbjct: 33 SYNRTPLMVACMLGMENAIDKLVENF-DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91
Query: 80 DHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIV 139
+VN K G+T L +I+ G +M L+ HGANVNDR+ +G TPL +A G IV
Sbjct: 92 -SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIV 150
Query: 140 KFLLSKKADVRAK 152
K LL AD+ A+
Sbjct: 151 KKLLELGADISAR 163
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 39/200 (19%)
Query: 310 KHTHVAEYLLQQDSINVNLPI--------KRPNLLLDTVMSLKDPKVMSQTQIKRLDQII 361
K+ + E + + SIN NL R L++ ++ +++ +D+++
Sbjct: 6 KNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENA----------IDKLV 55
Query: 362 KRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSD 421
+ D+ E+ + EG T L++A K+ L A+ L+ KG+NVN + D
Sbjct: 56 ENF-DKLEDKDIEGS---TALIWAVKNNRLGIAEKLLSKGSNVN-------------TKD 98
Query: 422 FCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNY 481
F ++ L ++ + EM LL HGA+VND N + PL VA + G +IVK+L
Sbjct: 99 FSGKTPLMWSIIFGYS-EMSYFLLEHGANVND-RNLEGETPLIVASKYGRSEIVKKLLEL 156
Query: 482 GAQIDKENY--LKNKEAARI 499
GA I + L + +ARI
Sbjct: 157 GADISARDLTGLTAEASARI 176
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 85 EKLQD----GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVK 140
+KL+D G TAL A+ + L+ G+NVN +D G TPL + G +
Sbjct: 59 DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSY 118
Query: 141 FLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANV 188
FLL A+V + TP++ S +EI+ L+E GA++
Sbjct: 119 FLLEHGANVNDRNLEGETPLIVAS------KYGRSEIVKKLLELGADI 160
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 526 VRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGF 585
V++N+ +K + G+ VN + L++ GY E+ LL++GA+VN ++ G
Sbjct: 76 VKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE 135
Query: 586 TALHMACRFHSNDNIVRKLLHHGAYYDMKD 615
T L +A ++ ++ IV+KLL GA +D
Sbjct: 136 TPLIVASKYGRSE-IVKKLLELGADISARD 164
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 91 RTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVR 150
RT L +A + G+ + L+ + + D+D +G T L A I + LLSK ++V
Sbjct: 36 RTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN 95
Query: 151 AKCSMMVTPIL-AVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNL 209
K TP++ ++ SE S L+E+GANV ++ +PL A
Sbjct: 96 TKDFSGKTPLMWSIIFGYSEMSY-------FLLEHGANVNDR-NLEGETPLIVASKYGRS 147
Query: 210 SVVELLIKCKAD 221
+V+ L++ AD
Sbjct: 148 EIVKKLLELGAD 159
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+E GA VN + + LI + G EIV LL+ GAD++ + TG TA + R
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA-EASARIFGR 179
Query: 598 DNIVR 602
+++
Sbjct: 180 QEVIK 184
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L +A + EV+ LLS G DVN + +DG T L++A G ++V LL+ GA+VN
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGA-DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKC 153
R + G TP HLA G+ IVK L +K ADV A+
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 88 QDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKA 147
+DG T L+ A G + V L+ GA+VN R + G TPLHLA G+ IVK LL+K A
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 148 DVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANV 188
DV A+ TP N EI+ +L GA+V
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHH------EIVKLLDAKGADV 101
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 377 DMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKN 436
D TPL AAK+ + K L+ KGA+VN ARS D + L A K+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVN-----------ARSKD--GNTPLHLAAKN-G 53
Query: 437 NIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENY 490
+ E+VKLLL GADVN S K P +A ++G +IVK L GA ++ ++
Sbjct: 54 HAEIVKLLLAKGADVNARS-KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%)
Query: 526 VRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGF 585
++ +EVKK + GA VN S+ + L A G+ EIV LLL GADVN +S G
Sbjct: 17 AKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGN 76
Query: 586 TALHMACR 593
T H+A +
Sbjct: 77 TPEHLAKK 84
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 361 IKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSS 420
+K+++ + ++NA D TPL AAK+ + K L+ KGA+VN ARS
Sbjct: 25 VKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-----------ARSK 73
Query: 421 DFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTS 455
D + ++ K + E+VKLL GADVN S
Sbjct: 74 DG---NTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDV 257
+PLH A + V+ L+ AD N K PL A ++ +IV+ L +K DV
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPL-HLAAKNGHAEIVKLLL-AKGADV 68
Query: 258 SISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
+ D N+ H A G+ +IV++L + D+NA+
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 562 GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKT 621
G+ E V LL GADVN +S G T LH+A + + + IV+ LL GA + + K G T
Sbjct: 20 GHAEEVKKLLSKGADVNARSKDGNTPLHLAAK-NGHAEIVKLLLAKGADVNARS-KDGNT 77
Query: 622 P 622
P
Sbjct: 78 P 78
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
L A ++ + V+ L SK DV+ D N+ LH A G+ +IV++L+ + D+NA+
Sbjct: 13 LHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 294 NRYFLPPMFFA 304
++ P A
Sbjct: 72 SKDGNTPEHLA 82
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 48/143 (33%)
Query: 263 DLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQD 322
D N+ LH A G+ + V+ L+ + D+NA+++ P+ A K+ H
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAA----KNGHA-------- 55
Query: 323 SINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPL 382
+I+K ++ + ++NA D TP
Sbjct: 56 ------------------------------------EIVKLLLAKGADVNARSKDGNTPE 79
Query: 383 LFAAKHCDLQSAKYLIQKGANVN 405
A K+ + K L KGA+VN
Sbjct: 80 HLAKKNGHHEIVKLLDAKGADVN 102
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 97/200 (48%), Gaps = 18/200 (9%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN-- 117
L A +N+ +V+ LL + + +K QDGR L+ ++ +++ + L+ NVN
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 118 -DRDEKGYTPLHLACYLGNKNIVKFLLSK--KADVRAKCSMMVTPI-LAVSANMSEDSTD 173
D+ G+TP H+AC +GN +VK L + K D+ + VT + LAV
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF----- 120
Query: 174 TNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKC-KADTNLIVKVNQEP 232
E+ LIENGA+VR K F PLH A +L ++ELL K+ N K P
Sbjct: 121 --EVSQFLIENGASVRIKDKFNQI-PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 233 LLFFAIESN---SVKIVEAF 249
L E + +V +VE +
Sbjct: 178 LFHALAEGHGDAAVLLVEKY 197
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 45/220 (20%)
Query: 94 LYMAILQGLYKMVTLLIHHGANVN-DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
L+ A ++ + V L+H ++ +D+ G PLH + I FLLSK +V
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV--- 62
Query: 153 CSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVV 212
N+ + D+ ++P H A NL VV
Sbjct: 63 -------------NLDDYPDDSG---------------------WTPFHIACSVGNLEVV 88
Query: 213 ELLI--KCKADTNLIVKVNQE-PLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLH 269
+ L K D N I NQ L A+ ++ + FL V I D LH
Sbjct: 89 KSLYDRPLKPDLNKIT--NQGVTCLHLAVGKKWFEVSQ-FLIENGASVRIKDKFNQIPLH 145
Query: 270 KACHVGNLQIVQMLVK-RKFDINAQNRYFLPPMFFAIGMG 308
+A VG+L+++++L K +N Q++ P+F A+ G
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNG-ADVNFKSATGFTALHMACRFHS 596
IE+GA V + + L A G ++++LL G + VN++ G+T L A
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 597 NDNIVRKLLHHGAYYDMKDGKTGKT 621
D V + +GA YD+ D K K
Sbjct: 187 GDAAVLLVEKYGAEYDLVDNKGAKA 211
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 97/200 (48%), Gaps = 18/200 (9%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN-- 117
L A +N+ +V+ LL + + +K QDGR L+ ++ +++ + L+ NVN
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 118 -DRDEKGYTPLHLACYLGNKNIVKFLLSK--KADVRAKCSMMVTPI-LAVSANMSEDSTD 173
D+ G+TP H+AC +GN +VK L + K D+ + VT + LAV
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF----- 120
Query: 174 TNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKC-KADTNLIVKVNQEP 232
E+ LIENGA+VR K F PLH A +L ++ELL K+ N K P
Sbjct: 121 --EVSQFLIENGASVRIKDKFNQI-PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 233 LLFFAIESN---SVKIVEAF 249
L E + +V +VE +
Sbjct: 178 LFHALAEGHGDAAVLLVEKY 197
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 45/220 (20%)
Query: 94 LYMAILQGLYKMVTLLIHHGANVN-DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
L+ A ++ + V L+H ++ +D+ G PLH + I FLLSK +V
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV--- 62
Query: 153 CSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVV 212
N+ + D+ ++P H A NL VV
Sbjct: 63 -------------NLDDYPDDSG---------------------WTPFHIACSVGNLEVV 88
Query: 213 ELLI--KCKADTNLIVKVNQE-PLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLH 269
+ L K D N I NQ L A+ ++ + FL V I D LH
Sbjct: 89 KSLYDRPLKPDLNKIT--NQGVTCLHLAVGKKWFEVSQ-FLIENGASVRIKDKFNQIPLH 145
Query: 270 KACHVGNLQIVQMLVK-RKFDINAQNRYFLPPMFFAIGMG 308
+A VG+L+++++L K +N Q++ P+F A+ G
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNG-ADVNFKSATGFTALHMACRFHS 596
IE+GA V + + L A G ++++LL G + VN++ G+T L A
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 597 NDNIVRKLLHHGAYYDMKDGKTGKT 621
D V + +GA YD+ D K K
Sbjct: 187 GDAAVLLVEKYGAEYDLVDNKGAKA 211
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 72/119 (60%), Gaps = 3/119 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V + + ++PLH A +L +VE+L+K AD N + PL A
Sbjct: 30 VRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA 88
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
+ + ++IVE L + DV+ +D + ++ LH A G+L+IV++L+K D+NAQ+++
Sbjct: 89 LFGH-LEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 12/161 (7%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDR 119
L A + EV L++ G DVN + G T L++A G ++V +L+ +GA+VN
Sbjct: 18 LLEAARAGRDDEVRILMANG-ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76
Query: 120 DEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI--LAVSANMSEDSTDTNEI 177
D G TPL LA G+ IV+ LL ADV A TP+ A+ ++ EI
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL--------EI 128
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKC 218
+ +L++NGA+V + F + ++ N + E+L K
Sbjct: 129 VEVLLKNGADVNAQDKFGK-TAFDISIDNGNEDLAEILQKL 168
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 47 INSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMV 106
+N+ A T L A ++ + VE LL G DVN G T L +A L G ++V
Sbjct: 40 VNAEDASG--WTPLHLAAFNGHLEIVEVLLKNG-ADVNAVDHAGMTPLRLAALFGHLEIV 96
Query: 107 TLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
+L+ +GA+VN D +G+TPLHLA G+ IV+ LL ADV A+
Sbjct: 97 EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ 142
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN + L A+ G+ EIV++LL NGADVN G T
Sbjct: 23 RAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMT 82
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPL 623
L +A F + IV LL +GA + D G TPL
Sbjct: 83 PLRLAALF-GHLEIVEVLLKNGADVNAND-MEGHTPL 117
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+++GA VN + L A G+ EIV++LL NGADVN G T LH+A F +
Sbjct: 67 LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF-GH 125
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKT 621
IV LL +GA + +D K GKT
Sbjct: 126 LEIVEVLLKNGADVNAQD-KFGKT 148
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN + A+G+T LH+A F+ + IV LL +GA
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAA-FNGHLEIVEVLLKNGADV 73
Query: 612 DMKDGKTGKTPLKHA 626
+ D G TPL+ A
Sbjct: 74 NAVD-HAGMTPLRLA 87
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 72/143 (50%), Gaps = 16/143 (11%)
Query: 347 KVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNL 406
K++ + R D++ + ++ ++NAE TPL AA + L+ + L++ GA+VN
Sbjct: 17 KLLEAARAGRDDEV-RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN- 74
Query: 407 TETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVA 466
+ D + L+ A ++E+V++LL +GADVN ++ PL +A
Sbjct: 75 ------------AVDHAGMTPLRLAALF-GHLEIVEVLLKNGADVN-ANDMEGHTPLHLA 120
Query: 467 IQSGDFQIVKELQNYGAQIDKEN 489
G +IV+ L GA ++ ++
Sbjct: 121 AMFGHLEIVEVLLKNGADVNAQD 143
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIA 500
V++L+ +GADVN + PL +A +G +IV+ L GA ++ ++ R+A
Sbjct: 30 VRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH-AGMTPLRLA 87
Query: 501 HSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAW 560
LE V+ +++GA VN + + L A
Sbjct: 88 ALFGHLEI-------------------------VEVLLKNGADVNANDMEGHTPLHLAAM 122
Query: 561 KGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSND--NIVRKL 604
G+ EIV++LL NGADVN + G TA ++ + D I++KL
Sbjct: 123 FGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+I++ ++ ++NA +TPL AA L+ + L++ GA+VN
Sbjct: 61 EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN------------- 107
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
++D + L A ++E+V++LL +GADVN +K + ++I +G+ + + L
Sbjct: 108 ANDMEGHTPLHLAAMF-GHLEIVEVLLKNGADVN-AQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 479 Q 479
Q
Sbjct: 166 Q 166
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 249 FLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMG 308
L + DV+ D + LH A G+L+IV++L+K D+NA + + P+ A G
Sbjct: 32 ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91
Query: 309 RKHTHVAEYLLQQDS-INVN 327
H + E LL+ + +N N
Sbjct: 92 --HLEIVEVLLKNGADVNAN 109
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 97/200 (48%), Gaps = 18/200 (9%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN-- 117
L A +N+ +V+ LL + + +K QDGR L+ ++ +++ + L+ NVN
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 118 -DRDEKGYTPLHLACYLGNKNIVKFLLSK--KADVRAKCSMMVTPI-LAVSANMSEDSTD 173
D+ G+TP H+AC +GN +VK L + K D+ + VT + LAV
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF----- 120
Query: 174 TNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKC-KADTNLIVKVNQEP 232
E+ LIENGA+VR K F PLH A +L ++ELL K+ N K P
Sbjct: 121 --EVSQFLIENGASVRIKDKFNQI-PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 233 LLFFAIESN---SVKIVEAF 249
L E + +V +VE +
Sbjct: 178 LFHALAEGHGDAAVLLVEKY 197
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 45/220 (20%)
Query: 94 LYMAILQGLYKMVTLLIHHGANVN-DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
L+ A ++ + V L+H ++ +D+ G PLH + I FLLSK +V
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV--- 62
Query: 153 CSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVV 212
N+ + D+ ++P H A NL VV
Sbjct: 63 -------------NLDDYPDDSG---------------------WTPFHIACSVGNLEVV 88
Query: 213 ELLI--KCKADTNLIVKVNQE-PLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLH 269
+ L K D N I NQ L A+ ++ + FL V I D LH
Sbjct: 89 KSLYDRPLKPDLNKIT--NQGVTCLHLAVGKKWFEVSQ-FLIENGASVRIKDKFNQIPLH 145
Query: 270 KACHVGNLQIVQMLVK-RKFDINAQNRYFLPPMFFAIGMG 308
+A VG+L+++++L K +N Q++ P+F A+ G
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNG-ADVNFKSATGFTALHMACRFHS 596
IE+GA V + + L A G ++++LL G + VN++ G+T L A
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186
Query: 597 NDNIVRKLLHHGAYYDMKDGKTGKT 621
D V + +GA YD+ D K K
Sbjct: 187 GDAAVLLVEKYGAEYDLVDNKGAKA 211
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDR 119
L A + EV L++ G DVN K + G T LY+A G ++V +L+ +GA+VN
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 120 DEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSED 170
D G+TPLHLA ++G+ I + LL ADV A+ T N +ED
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNED 127
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 526 VRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGF 585
R+ + DEV+ + +GA VN E + L G+ EIV++LL NGADVN A GF
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF 81
Query: 586 TALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPL 623
T LH+A F + I LL HGA + +D K GKT
Sbjct: 82 TPLHLAA-FIGHLEIAEVLLKHGADVNAQD-KFGKTAF 117
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 38/141 (26%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V K + +PL+ A +L +VE+L+K AD N + + PL
Sbjct: 30 VRILMANGADVNAKDEYG-LTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPL---- 84
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYF 297
H A +G+L+I ++L+K D+NAQ+++
Sbjct: 85 -------------------------------HLAAFIGHLEIAEVLLKHGADVNAQDKF- 112
Query: 298 LPPMFFAIGMGRKHTHVAEYL 318
F I +G + +AE L
Sbjct: 113 -GKTAFDISIGNGNEDLAEIL 132
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSA 165
V +L+ +GA+VN +DE G TPL+LA G+ IV+ LL ADV A ++ TP L ++A
Sbjct: 30 VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTP-LHLAA 88
Query: 166 NMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKC 218
+ EI +L+++GA+V + F + ++ N + E+L K
Sbjct: 89 FIGH-----LEIAEVLLKHGADVNAQDKFGK-TAFDISIGNGNEDLAEILQKL 135
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN K G T L++A H + IV LL +GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATA-HGHLEIVEVLLKNGADV 73
Query: 612 DMKDGKTGKTPL 623
+ D G TPL
Sbjct: 74 NAVD-AIGFTPL 84
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NA+ + +TPL A H L+ + L++ GA+VN
Sbjct: 27 DDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN------------ 74
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+ D + L A ++E+ ++LL HGADVN +K + ++I +G+ + +
Sbjct: 75 -AVDAIGFTPLHLAA-FIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEI 131
Query: 478 LQ 479
LQ
Sbjct: 132 LQ 133
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 263 DLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQD 322
DL L +A G V++L+ D+NA++ Y L P++ A G H + E LL+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG--HLEIVEVLLKNG 70
Query: 323 S 323
+
Sbjct: 71 A 71
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+++GA VN + L A+ G+ EI ++LL +GADVN + G TA ++ +
Sbjct: 67 LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126
Query: 598 D--NIVRKL 604
D I++KL
Sbjct: 127 DLAEILQKL 135
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 101/246 (41%), Gaps = 58/246 (23%)
Query: 71 EVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
EV LL G D+N DG TAL+ A + MV L+ +GAN+N D +G+ PLH A
Sbjct: 55 EVLRLLERG-ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAA 113
Query: 131 CYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEI--ISMLIENGANV 188
G +I ++L+S+ A V A S TP L ++ + + NE+ + IE
Sbjct: 114 ASCGYLDIAEYLISQGAHVGAVNSEGDTP-LDIAEEEAMEELLQNEVNRQGVDIEAARKE 172
Query: 189 REKMPFTDF-------------------SPLHFAVVKKNLSVVELLIKCKADTNLIVKVN 229
E++ D + LH A K V++LLI+ +
Sbjct: 173 EERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR---------- 222
Query: 230 QEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFD 289
+DV+I D D + LH A H G + ++LV+ D
Sbjct: 223 -------------------------YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD 257
Query: 290 INAQNR 295
+ A N+
Sbjct: 258 MEAVNK 263
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 69 IREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLH 128
+R+ L++G + + G TAL++A +G +++ LLI +VN +D G+TPLH
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLH 237
Query: 129 LACYLGNKNIVKFLLSKKADVRA 151
A + G + + L+ D+ A
Sbjct: 238 AAAHWGKEEACRILVENLCDMEA 260
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 23/228 (10%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
D A G + V L+ GA++N + G T LH AC N ++VKFL+ A+
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 149 VRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKN 208
+ + P+ A + S +I LI GA+V AV +
Sbjct: 99 INQPDNEGWIPLHAAA------SCGYLDIAEYLISQGAHV-------------GAVNSEG 139
Query: 209 LSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIV----EAFLNSKNFDVSISDGDL 264
+ +++ + + L +VN++ + A +I+ +LNS + +
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG 199
Query: 265 NSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHT 312
+ LH A G +++++L++ ++D+N ++ P+ A G++
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEA 247
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G+ + G E V LL+ GAD+N+ + G TALH AC N ++V+ L+ +GA
Sbjct: 41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQAC-IDDNVDMVKFLVENGANI 99
Query: 612 DMKDGKTGKTPLKHAEA 628
+ D + G PL HA A
Sbjct: 100 NQPDNE-GWIPL-HAAA 114
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 51/234 (21%)
Query: 363 RIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDF 422
R+++R +IN D +T L A ++ K+L++ GAN+N + + A +S
Sbjct: 58 RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS-- 115
Query: 423 CFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVK-ELQNY 481
C + +++ + L+ GA V N PL +A + ++++ E+
Sbjct: 116 ---------CGY---LDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162
Query: 482 GAQIDKENYLKNKEAARIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDG 541
G I EAAR + EER + ++ + G
Sbjct: 163 GVDI---------EAAR------KEEERIMLR-------------------DARQWLNSG 188
Query: 542 ACVNVSSERRGSALIYV-AWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF 594
+V + G ++V A KGY E++ LL+ DVN K G+T LH A +
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW 242
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 528 SNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTA 587
S +EV + +E GA +N ++ +AL ++V L++NGA++N G+
Sbjct: 50 SGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIP 109
Query: 588 LHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPL 623
LH A D I L+ GA+ + + G TPL
Sbjct: 110 LHAAASCGYLD-IAEYLISQGAHVGAVNSE-GDTPL 143
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 8/147 (5%)
Query: 71 EVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
EV L++ G DVN G T L++A G ++V +L+ HGA+VN D G TPLHLA
Sbjct: 29 EVRILMANG-ADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLA 87
Query: 131 CYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVRE 190
+G+ IV+ LL ADV A + TP L ++A M EI+ +L+++GA+V
Sbjct: 88 ALIGHLEIVEVLLKHGADVNAVDTWGDTP-LHLAAIMGH-----LEIVEVLLKHGADVNA 141
Query: 191 KMPFTDFSPLHFAVVKKNLSVVELLIK 217
+ F + ++ N + E+L K
Sbjct: 142 QDKFGK-TAFDISIDNGNEDLAEILQK 167
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 7/118 (5%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSA 165
V +L+ +GA+VN D G TPLHLA G+ IV+ LL ADV A TP L ++A
Sbjct: 30 VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTP-LHLAA 88
Query: 166 NMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
+ EI+ +L+++GA+V + D +PLH A + +L +VE+L+K AD N
Sbjct: 89 LIGH-----LEIVEVLLKHGADVNAVDTWGD-TPLHLAAIMGHLEIVEVLLKHGADVN 140
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V + +PLH A +L +VE+L+K AD N I PL A
Sbjct: 30 VRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAA 88
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
+ + ++IVE L DV+ D ++ LH A +G+L+IV++L+K D+NAQ+++
Sbjct: 89 LIGH-LEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKF 145
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN + + L A G+ EIV++LL +GADVN G T
Sbjct: 23 RAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGST 82
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
LH+A + IV LL HGA + D G TPL A
Sbjct: 83 PLHLAALI-GHLEIVEVLLKHGADVNAVD-TWGDTPLHLA 120
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN A+G T LH+A + + IV LL HGA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATY-GHLEIVEVLLKHGADV 73
Query: 612 DMKDGKTGKTPLKHA 626
+ D G TPL A
Sbjct: 74 NAID-IXGSTPLHLA 87
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NA +TPL AA + L+ + L++ GA+VN D
Sbjct: 27 DDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI--------DI 78
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
S +AL ++E+V++LL HGADVN + PL +A G +IV+
Sbjct: 79 XGSTPLHLAAL------IGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEV 131
Query: 478 LQNYGAQIDKEN 489
L +GA ++ ++
Sbjct: 132 LLKHGADVNAQD 143
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
++ GA VN + L A G+ EIV++LL +GADVN G T LH+A +
Sbjct: 67 LKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAA-IMGH 125
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKT 621
IV LL HGA + +D K GKT
Sbjct: 126 LEIVEVLLKHGADVNAQD-KFGKT 148
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 33/154 (21%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE---AA 497
V++L+ +GADVN T + PL +A G +IV+ L +GA ++ + + AA
Sbjct: 30 VRILMANGADVNAT-DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAA 88
Query: 498 RIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIY 557
I H + V+ ++ GA VN + L
Sbjct: 89 LIGH-----------------------------LEIVEVLLKHGADVNAVDTWGDTPLHL 119
Query: 558 VAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
A G+ EIV++LL +GADVN + G TA ++
Sbjct: 120 AAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 15/112 (13%)
Query: 375 GDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
G D+ LL AA+ + L+ GA+VN T+ + L A +
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNATDASGL-------------TPLHLAATY 57
Query: 435 KNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQID 486
++E+V++LL HGADVN + PL +A G +IV+ L +GA ++
Sbjct: 58 -GHLEIVEVLLKHGADVN-AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V + + D +PLH A +L +VE+L+K AD N + PL A
Sbjct: 30 VRILMANGADVNAEDTYGD-TPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPL-HLA 87
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
+ ++IVE L DV+ D ++ LH A G+L+IV++L+K D+NAQ+++
Sbjct: 88 AKRGHLEIVEVLL-KYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKF 145
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 7/135 (5%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDR 119
L A + EV L++ G DVN + G T L++A G ++V +L+ +GA+VN
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 120 DEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIIS 179
D G TPLHLA G+ IV+ LL ADV A ++ TP+ +++ D T EI+
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPL-----HLAAD-TGHLEIVE 130
Query: 180 MLIENGANVREKMPF 194
+L++ GA+V + F
Sbjct: 131 VLLKYGADVNAQDKF 145
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSA 165
V +L+ +GA+VN D G TPLHLA +G+ IV+ LL ADV A TP L ++A
Sbjct: 30 VRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTP-LHLAA 88
Query: 166 NMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
EI+ +L++ GA+V +PLH A +L +VE+L+K AD N
Sbjct: 89 KRGH-----LEIVEVLLKYGADVNADDTIGS-TPLHLAADTGHLEIVEVLLKYGADVN 140
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 15/132 (11%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NAE TPL AA+ L+ + L++ GA+VN
Sbjct: 27 DDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN------------ 74
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+ DF + L A K + ++E+V++LL +GADVN + PL +A +G +IV+
Sbjct: 75 -ALDFSGSTPLHLAAK-RGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLEIVEV 131
Query: 478 LQNYGAQIDKEN 489
L YGA ++ ++
Sbjct: 132 LLKYGADVNAQD 143
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN + L A G+ EIV++LL NGADVN +G T
Sbjct: 23 RAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGST 82
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPL 623
LH+A + + IV LL +GA + D G TPL
Sbjct: 83 PLHLAAK-RGHLEIVEVLLKYGADVNADD-TIGSTPL 117
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+++GA VN + L A +G+ EIV++LL GADVN G T LH+A +
Sbjct: 67 LKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADT-GH 125
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKT 621
IV LL +GA + +D K GKT
Sbjct: 126 LEIVEVLLKYGADVNAQD-KFGKT 148
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN + G T LH+A R + IV LL +GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARV-GHLEIVEVLLKNGADV 73
Query: 612 DMKDGKTGKTPL 623
+ D +G TPL
Sbjct: 74 NALD-FSGSTPL 84
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 83/217 (38%), Gaps = 63/217 (29%)
Query: 263 DLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQD 322
DL L +A G V++L+ D+NA++ Y P+ A +G H + E LL+
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVG--HLEIVEVLLKNG 70
Query: 323 SINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPL 382
+ ++NA TPL
Sbjct: 71 A----------------------------------------------DVNALDFSGSTPL 84
Query: 383 LFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVK 442
AAK L+ + L++ GA+VN +D S + ++E+V+
Sbjct: 85 HLAAKRGHLEIVEVLLKYGADVN--------------ADDTIGSTPLHLAADTGHLEIVE 130
Query: 443 LLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQ 479
+LL +GADVN +K + ++I +G+ + + LQ
Sbjct: 131 VLLKYGADVN-AQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
VE LL G DVN G T L++A G ++V +L+ +GA+VN +D+ G T ++
Sbjct: 96 VEVLLKYG-ADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 132 YLGNKNIVKFL 142
GN+++ + L
Sbjct: 155 DNGNEDLAEIL 165
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 249 FLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMG 308
L + DV+ D ++ LH A VG+L+IV++L+K D+NA + P+ A
Sbjct: 32 ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLA--AK 89
Query: 309 RKHTHVAEYLLQ 320
R H + E LL+
Sbjct: 90 RGHLEIVEVLLK 101
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 27/152 (17%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIA 500
V++L+ +GADVN + PL +A + G +IV+ L GA ++ ++
Sbjct: 30 VRILMANGADVN-AEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDF---------- 78
Query: 501 HSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAW 560
+T L + + V+ ++ GA VN + L A
Sbjct: 79 SGSTPLH----------------LAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAAD 122
Query: 561 KGYEEIVDLLLDNGADVNFKSATGFTALHMAC 592
G+ EIV++LL GADVN + G TA ++
Sbjct: 123 TGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V ++PLH A +L +VE+L+K AD N + PL A
Sbjct: 30 VRILMANGADVNAS-DHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPL-HLA 87
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
+ +++VE L + DV+ +D + + LH A ++G+L+IV++L+K D+NAQ+++
Sbjct: 88 ADRGHLEVVEVLLKN-GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKF 145
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 50 SSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLL 109
+++ V T L A + + VE LL G DVN G T L++A +G ++V +L
Sbjct: 41 NASDHVGWTPLHLAAYFGHLEIVEVLLKNG-ADVNADDSLGVTPLHLAADRGHLEVVEVL 99
Query: 110 IHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
+ +GA+VN D G+TPLHLA +G+ IV+ LL ADV A+
Sbjct: 100 LKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQ 142
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN S + L A+ G+ EIV++LL NGADVN + G T
Sbjct: 23 RAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVT 82
Query: 587 ALHMAC-RFHSNDNIVRKLLHHGAYYDMKDGKTGKTPL 623
LH+A R H +V LL +GA + D G TPL
Sbjct: 83 PLHLAADRGHL--EVVEVLLKNGADVNAND-HNGFTPL 117
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+++GA VN + L A +G+ E+V++LL NGADVN GFT LH+A +
Sbjct: 67 LKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANI-GH 125
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKT 621
IV LL HGA + +D K GKT
Sbjct: 126 LEIVEVLLKHGADVNAQD-KFGKT 148
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN G+T LH+A F + IV LL +GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYF-GHLEIVEVLLKNGADV 73
Query: 612 DMKDGKTGKTPL 623
+ D G TPL
Sbjct: 74 NADD-SLGVTPL 84
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 15/121 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+I++ ++ ++NA+ +TPL AA L+ + L++ GA+VN
Sbjct: 61 EIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN------------- 107
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
++D + L A ++E+V++LL HGADVN +K + ++I +G+ + + L
Sbjct: 108 ANDHNGFTPLHLAAN-IGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 479 Q 479
Q
Sbjct: 166 Q 166
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NA TPL AA L+ + L++ GA+VN
Sbjct: 27 DDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN------------ 74
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+ D + L A + ++E+V++LL +GADVN ++ PL +A G +IV+
Sbjct: 75 -ADDSLGVTPLHLAAD-RGHLEVVEVLLKNGADVN-ANDHNGFTPLHLAANIGHLEIVEV 131
Query: 478 LQNYGAQIDKEN 489
L +GA ++ ++
Sbjct: 132 LLKHGADVNAQD 143
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 249 FLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMG 308
L + DV+ SD + LH A + G+L+IV++L+K D+NA + + P+ A
Sbjct: 32 ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLA--AD 89
Query: 309 RKHTHVAEYLLQQDS-INVN 327
R H V E LL+ + +N N
Sbjct: 90 RGHLEVVEVLLKNGADVNAN 109
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIA 500
V++L+ +GADVN S+ PL +A G +IV+ L GA ++ ++ L
Sbjct: 30 VRILMANGADVN-ASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSL--------- 79
Query: 501 HSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAW 560
T L + V+ +++GA VN + + L A
Sbjct: 80 -GVTPLH----------------LAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAAN 122
Query: 561 KGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSND--NIVRKL 604
G+ EIV++LL +GADVN + G TA ++ + D I++KL
Sbjct: 123 IGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 18/130 (13%)
Query: 375 GDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
G D+ LL AA+ + L+ GA+VN +SD + L A +
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVN-------------ASDHVGWTPLHLAA-Y 56
Query: 435 KNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQI---DKENYL 491
++E+V++LL +GADVN + PL +A G ++V+ L GA + D +
Sbjct: 57 FGHLEIVEVLLKNGADVN-ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFT 115
Query: 492 KNKEAARIAH 501
AA I H
Sbjct: 116 PLHLAANIGH 125
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 109/245 (44%), Gaps = 34/245 (13%)
Query: 82 DVNEKLQDGR--TALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIV 139
+VN DGR T L++A ++V LL+ HGA+V+ +D+ G PLH AC G+ +
Sbjct: 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVT 107
Query: 140 KFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSP 199
+ LL A V A TP+ + S + E+ S+L+ +GA+
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAA------SKNRVEVCSLLLSHGADPT---------- 151
Query: 200 LHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAF-LNSKNFDVS 258
V S V++ + L + LL A E++ K+ + L NF
Sbjct: 152 ---LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP 208
Query: 259 ISDGDLNSLLHKACHVGNL-----QIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTH 313
S + LH C V +L Q+ ++L+++ ++N +N+ F+ P+ A R H
Sbjct: 209 QSH---ETALH--CAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAA--ERAHND 261
Query: 314 VAEYL 318
V E L
Sbjct: 262 VMEVL 266
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 122/287 (42%), Gaps = 27/287 (9%)
Query: 224 LIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQML 283
L + ++ LL A N K++ A L N + SDG ++ LH A ++IVQ+L
Sbjct: 19 LTGEYKKDELLEAARSGNEEKLM-ALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLL 77
Query: 284 VKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSL 343
++ D++A+++ L P+ A G H V E LL+ + VN +D
Sbjct: 78 LQHGADVHAKDKGGLVPLHNACSYG--HYEVTELLLKHGAC-VN--------AMDLWQFT 126
Query: 344 KDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMI----TPLLFAAKHCDLQSAKYLIQ 399
+ S+ +++ ++ D T +N G + TP L + + L+Q
Sbjct: 127 PLHEAASKNRVEVCSLLLSHGADPTL-VNCHGKSAVDMAPTPELRERLTYEFK-GHSLLQ 184
Query: 400 KGANVNLTETQKAF------ISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVND 453
+L + +K +S + A+ A H ++ +LLL GA+VN+
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAV--ASLHPKRKQVAELLLRKGANVNE 242
Query: 454 TSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIA 500
NK PL VA + +++ L +GA+++ + L R A
Sbjct: 243 -KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA 288
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 46 IINSSSAKSVELTLLCS-AVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYK 104
IIN +S E L C+ A K ++V LL +VNEK +D T L++A +
Sbjct: 202 IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND 261
Query: 105 MVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
++ +L HGA +N D G T LH A G+ + LLS +D
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 547 SSERRGSALIYVAWKGYEE--IVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKL 604
+S+ R S +++A GY IV LLL +GADV+ K G LH AC + + + L
Sbjct: 53 ASDGRKSTPLHLA-AGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY-GHYEVTELL 110
Query: 605 LHHGAYYDMKDGKTGKTPLKHAEAGKNR 632
L HGA + D TPL H A KNR
Sbjct: 111 LKHGACVNAMD-LWQFTPL-HEAASKNR 136
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 109/264 (41%), Gaps = 31/264 (11%)
Query: 370 NINAEGDD--MITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSA 427
N+N D TPL AA + ++ + L+Q GA+V+ + D
Sbjct: 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-------------AKDKGGLVP 94
Query: 428 LQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDK 487
L AC + + E+ +LLL HGA VN + + PL A ++ L ++GA
Sbjct: 95 LHNACSY-GHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL 152
Query: 488 ENYLKNKEAARIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVS 547
N K A +A T EL ER R +VKK + +N
Sbjct: 153 VN-CHGKSAVDMA-PTPELRERLTYEFKGHSLLQA---AREADLAKVKKTLAL-EIINFK 206
Query: 548 SERRGSALIYVAWKGY----EEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRK 603
+ ++ A +++ +LLL GA+VN K+ T LH+A ND V +
Sbjct: 207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND--VME 264
Query: 604 LLH-HGAYYDMKDGKTGKTPLKHA 626
+LH HGA + D G+T L A
Sbjct: 265 VLHKHGAKMNALD-SLGQTALHRA 287
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 100/261 (38%), Gaps = 61/261 (23%)
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
L A N V+IV+ L DV D LH AC G+ ++ ++L+K +NA
Sbjct: 62 LHLAAGYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM 120
Query: 294 NRYFLPPMFFAIGMGRKH------THVAE------------------------------Y 317
+ + P+ A R +H A+ +
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180
Query: 318 LLQQDSINVNLPIKRPNLLLDTVMSLKDPK--------VMSQTQIKRLDQIIKRIIDRTE 369
L Q + +L + L L+ +++ K P+ ++ KR Q+ + ++ +
Sbjct: 181 SLLQAAREADLAKVKKTLALE-IINFKQPQSHETALHCAVASLHPKR-KQVAELLLRKGA 238
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
N+N + D +TPL AA+ + L + GA +N D+ R+AL
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL--------DSLGQTALHRAAL- 289
Query: 430 YACKHKNNIEMVKLLLLHGAD 450
+++ +LLL +G+D
Sbjct: 290 -----AGHLQTCRLLLSYGSD 305
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 88 QDGRTALYMAI--LQGLYKMVT-LLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLS 144
Q TAL+ A+ L K V LL+ GANVN++++ TPLH+A + ++++ L
Sbjct: 209 QSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK 268
Query: 145 KKADVRAKCSMMVTPI 160
A + A S+ T +
Sbjct: 269 HGAKMNALDSLGQTAL 284
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
VE LL G DVN G T L++A G ++V +L+ HGA+VN +D +G+TPLHLA
Sbjct: 63 VEVLLKYG-ADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAA 121
Query: 132 YLGNKNIVKFLLSKKADVRAK 152
Y G+ IV+ LL ADV A+
Sbjct: 122 YDGHLEIVEVLLKYGADVNAQ 142
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V + +PLH A +L +VE+L+K AD N PL A
Sbjct: 30 VRILMANGADV-NATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPL-HLA 87
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
++ ++IVE L DV+ D + + LH A + G+L+IV++L+K D+NAQ+++
Sbjct: 88 ADNGHLEIVEVLLK-HGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKF 145
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN + + L A G+ EIV++LL GADVN G T
Sbjct: 23 RAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGAT 82
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
LH+A + + IV LL HGA + KD + G TPL A
Sbjct: 83 PLHLAAD-NGHLEIVEVLLKHGADVNAKDYE-GFTPLHLA 120
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 541 GACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNI 600
GA VN + L A G+ EIV++LL +GADVN K GFT LH+A + + I
Sbjct: 70 GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAA-YDGHLEI 128
Query: 601 VRKLLHHGAYYDMKDGKTGKT 621
V LL +GA + +D K GKT
Sbjct: 129 VEVLLKYGADVNAQD-KFGKT 148
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 375 GDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
G D+ LL AA+ + L+ GA+VN T D+ + L A K
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAT-------------DWLGHTPLHLAAK- 56
Query: 435 KNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENY 490
++E+V++LL +GADVN N PL +A +G +IV+ L +GA ++ ++Y
Sbjct: 57 TGHLEIVEVLLKYGADVNAWDNY-GATPLHLAADNGHLEIVEVLLKHGADVNAKDY 111
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 29/152 (19%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDK-ENYLKNKEAARI 499
V++L+ +GADVN T + PL +A ++G +IV+ L YGA ++ +NY +
Sbjct: 30 VRILMANGADVNAT-DWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY--GATPLHL 86
Query: 500 AHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVA 559
A LE V+ ++ GA VN + L A
Sbjct: 87 AADNGHLEI-------------------------VEVLLKHGADVNAKDYEGFTPLHLAA 121
Query: 560 WKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
+ G+ EIV++LL GADVN + G TA ++
Sbjct: 122 YDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN G T LH+A + + IV LL +GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAK-TGHLEIVEVLLKYGADV 73
Query: 612 DMKDGKTGKTPLKHA 626
+ D G TPL A
Sbjct: 74 NAWD-NYGATPLHLA 87
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 256 DVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVA 315
DV+ +D ++ LH A G+L+IV++L+K D+NA + Y P+ A G H +
Sbjct: 39 DVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNG--HLEIV 96
Query: 316 EYLLQQ 321
E LL+
Sbjct: 97 EVLLKH 102
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 15/121 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+I++ ++ ++NA + TPL AA + L+ + L++ GA+VN
Sbjct: 61 EIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVN------------- 107
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+ D+ + L A + ++E+V++LL +GADVN +K + ++I +G+ + + L
Sbjct: 108 AKDYEGFTPLHLAA-YDGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 479 Q 479
Q
Sbjct: 166 Q 166
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
+GRT L++A G ++V LL+ GA+VN +D+ G TPLHLA G+ +VK LL AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 149 VRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGA 186
V AK TP+ + N E++ +L+E GA
Sbjct: 61 VNAKDKNGRTPLHLAARN------GHLEVVKLLLEAGA 92
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L A + + V+ LL G DVN K ++GRT L++A G ++V LL+ GA+VN
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKA 147
+D+ G TPLHLA G+ +VK LL A
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + VK +E GA VN + + L A G+ E+V LLL+ GADVN K G T
Sbjct: 11 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 70
Query: 587 ALHMACRFHSNDNIVRKLLHHGAY 610
LH+A R + + +V+ LL GAY
Sbjct: 71 PLHLAAR-NGHLEVVKLLLEAGAY 93
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 123 GYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLI 182
G TPLHLA G+ +VK LL ADV AK TP+ + N E++ +L+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN------GHLEVVKLLL 55
Query: 183 ENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKA 220
E GA+V K +PLH A +L VV+LL++ A
Sbjct: 56 EAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 559 AWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKT 618
A G+ E+V LLL+ GADVN K G T LH+A R + + +V+ LL GA + KD K
Sbjct: 10 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR-NGHLEVVKLLLEAGADVNAKD-KN 67
Query: 619 GKTPLKHA 626
G+TPL A
Sbjct: 68 GRTPLHLA 75
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
TPL AA++ L+ K L++ GA+VN + D R+ L A ++ ++E
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-------------AKDKNGRTPLHLAARN-GHLE 49
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGA 483
+VKLLL GADVN +K + PL +A ++G ++VK L GA
Sbjct: 50 VVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDV 257
+PLH A +L VV+LL++ AD N K + P L A + +++V+ L + DV
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP-LHLAARNGHLEVVKLLLEA-GADV 61
Query: 258 SISDGDLNSLLHKACHVGNLQIVQMLVK 285
+ D + + LH A G+L++V++L++
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 425 RSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQ 484
R+ L A ++ ++E+VKLLL GADVN +K + PL +A ++G ++VK L GA
Sbjct: 3 RTPLHLAARN-GHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 485 I---DKENYLKNKEAARIAH 501
+ DK AAR H
Sbjct: 61 VNAKDKNGRTPLHLAARNGH 80
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+++K +++ ++NA+ + TPL AA++ L+ K L++ GA+VN
Sbjct: 16 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN------------- 62
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGA 449
+ D R+ L A ++ ++E+VKLLL GA
Sbjct: 63 AKDKNGRTPLHLAARN-GHLEVVKLLLEAGA 92
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 71 EVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
EV L++ G DVN G T L++A +G ++V +L+ HGA+VN RD G TPLHLA
Sbjct: 29 EVRILMANG-ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLA 87
Query: 131 CYLGNKNIVKFLLSKKADVRAK 152
+G+ IV+ LL ADV A+
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQ 109
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN + + L A +G+ EIV++LL +GADVN + G T
Sbjct: 23 RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRT 82
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKT 621
LH+A + IV LL +GA + +D K GKT
Sbjct: 83 PLHLAATV-GHLEIVEVLLEYGADVNAQD-KFGKT 115
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSA 165
V +L+ +GA+VN D+ G TPLHLA G+ IV+ LL ADV A+ TP L ++A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTP-LHLAA 88
Query: 166 NMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIK 217
+ EI+ +L+E GA+V + F + ++ N + E+L K
Sbjct: 89 TVGH-----LEIVEVLLEYGADVNAQDKFGK-TAFDISIDNGNEDLAEILQK 134
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 16/133 (12%)
Query: 347 KVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNL 406
K++ T+ + D++ + ++ ++NA D +TPL AAK L+ + L++ GA+VN
Sbjct: 17 KLLEATRAGQDDEV-RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN- 74
Query: 407 TETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVA 466
+ D R+ L A ++E+V++LL +GADVN +K + ++
Sbjct: 75 ------------ARDIWGRTPLHLAAT-VGHLEIVEVLLEYGADVN-AQDKFGKTAFDIS 120
Query: 467 IQSGDFQIVKELQ 479
I +G+ + + LQ
Sbjct: 121 IDNGNEDLAEILQ 133
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ G ++ V +L+ NGADVN G T LH+A + + IV LL HGA
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAK-RGHLEIVEVLLKHGADV 73
Query: 612 DMKDGKTGKTPLKHA 626
+ +D G+TPL A
Sbjct: 74 NARD-IWGRTPLHLA 87
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 36/119 (30%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V M +PLH A + +L +VE+L+K AD N + P
Sbjct: 30 VRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTP----- 83
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
LH A VG+L+IV++L++ D+NAQ+++
Sbjct: 84 ------------------------------LHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Score = 35.8 bits (81), Expect = 0.082, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 256 DVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVA 315
DV+ D + LH A G+L+IV++L+K D+NA++ + P+ A +G H +
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVG--HLEIV 96
Query: 316 EYLLQ 320
E LL+
Sbjct: 97 EVLLE 101
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
++ GA VN + L A G+ EIV++LL+ GADVN + G TA ++
Sbjct: 67 LKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V F +PLH V +L ++E+L+K AD N K PL A
Sbjct: 30 VRILMANGADVNANDWFG-ITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAA 88
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
+ ++IVE L DV+ D + LH A G+L+IV++L+K D+NAQ+++
Sbjct: 89 YRGH-LEIVEVLL-KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKF 145
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 82 DVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKF 141
DVN + G T L++A +G ++V +L+ +GA+VN D +GYTPLHLA G+ IV+
Sbjct: 72 DVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEV 131
Query: 142 LLSKKADVRAK 152
LL ADV A+
Sbjct: 132 LLKYGADVNAQ 142
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN + + L V G+ EI+++LL ADVN +G+T
Sbjct: 23 RAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWT 82
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPL 623
LH+A + + IV LL +GA + D G TPL
Sbjct: 83 PLHLAA-YRGHLEIVEVLLKYGADVNAMD-YQGYTPL 117
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 542 ACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIV 601
A VN S + + L A++G+ EIV++LL GADVN G+T LH+A + IV
Sbjct: 71 ADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAE-DGHLEIV 129
Query: 602 RKLLHHGAYYDMKDGKTGKTPL 623
LL +GA + +D K GKT
Sbjct: 130 EVLLKYGADVNAQD-KFGKTAF 150
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NA ITPL + L+ + L++ A+VN
Sbjct: 27 DDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN------------ 74
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+SD + L A ++ ++E+V++LL +GADVN + PL +A + G +IV+
Sbjct: 75 -ASDKSGWTPLHLAA-YRGHLEIVEVLLKYGADVN-AMDYQGYTPLHLAAEDGHLEIVEV 131
Query: 478 LQNYGAQIDKEN 489
L YGA ++ ++
Sbjct: 132 LLKYGADVNAQD 143
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+II+ ++ ++NA TPL AA L+ + L++ GA+VN
Sbjct: 61 EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN------------- 107
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+ D+ + L A + ++E+V++LL +GADVN +K + ++I +G+ + + L
Sbjct: 108 AMDYQGYTPLHLAAE-DGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 479 Q 479
Q
Sbjct: 166 Q 166
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN G T LH+ + + I+ LL + A
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVN-NGHLEIIEVLLKYAADV 73
Query: 612 DMKDGKTGKTPL 623
+ D K+G TPL
Sbjct: 74 NASD-KSGWTPL 84
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 35/169 (20%)
Query: 441 VKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQI---DKENYLKNKEAA 497
V++L+ +GADVN ++ PL + + +G +I++ L Y A + DK + AA
Sbjct: 30 VRILMANGADVN-ANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAA 88
Query: 498 RIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIY 557
H E+ E KY GA VN + + L
Sbjct: 89 YRGH--LEIVEVLL------------------KY---------GADVNAMDYQGYTPLHL 119
Query: 558 VAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSND--NIVRKL 604
A G+ EIV++LL GADVN + G TA ++ + D I++KL
Sbjct: 120 AAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDR 119
L A + EV L++ G DVN +DG T L++A G ++V +L+ +GA+VN
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 120 DEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
D G TPLHLA G+ IV+ LL ADV A+
Sbjct: 77 DNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQ 109
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 11/115 (9%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP--ILAV 163
V +L+ +GA+VN DE G TPLHLA LG+ IV+ LL ADV A+ + +TP + A+
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAI 89
Query: 164 SANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKC 218
++ EI+ +L+++GA+V + F + ++ N + E+L K
Sbjct: 90 RGHL--------EIVEVLLKHGADVNAQDKFGK-TAFDISIDNGNEDLAEILQKL 135
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN E + L A G+ EIV++LL GADVN + G T
Sbjct: 23 RAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGIT 82
Query: 587 ALHMAC-RFHSNDNIVRKLLHHGAYYDMKDGKTGKT 621
LH+A R H IV LL HGA + +D K GKT
Sbjct: 83 PLHLAAIRGHL--EIVEVLLKHGADVNAQD-KFGKT 115
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 130 ACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVR 189
A G + V+ L++ ADV A +TP L ++A + EI+ +L++ GA+V
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTP-LHLAAQLGH-----LEIVEVLLKYGADVN 74
Query: 190 EKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
+ F +PLH A ++ +L +VE+L+K AD N
Sbjct: 75 AEDNFG-ITPLHLAAIRGHLEIVEVLLKHGADVN 107
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 38/141 (26%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V + +PLH A +L +VE+L+K AD N
Sbjct: 30 VRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA------------- 75
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYF 297
NF ++ LH A G+L+IV++L+K D+NAQ+++
Sbjct: 76 --------------EDNFGITP--------LHLAAIRGHLEIVEVLLKHGADVNAQDKF- 112
Query: 298 LPPMFFAIGMGRKHTHVAEYL 318
F I + + +AE L
Sbjct: 113 -GKTAFDISIDNGNEDLAEIL 132
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 249 FLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMG 308
L + DV+ D D + LH A +G+L+IV++L+K D+NA++ + + P+ A
Sbjct: 32 ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLA--AI 89
Query: 309 RKHTHVAEYLLQQ 321
R H + E LL+
Sbjct: 90 RGHLEIVEVLLKH 102
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN G T LH+A + + IV LL +GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQL-GHLEIVEVLLKYGADV 73
Query: 612 DMKDGKTGKTPL 623
+ +D G TPL
Sbjct: 74 NAED-NFGITPL 84
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 15/122 (12%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NA +D +TPL AA+ L+ + L++ GA+VN
Sbjct: 27 DDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN------------ 74
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+ D + L A + ++E+V++LL HGADVN +K + ++I +G+ + +
Sbjct: 75 -AEDNFGITPLHLAAI-RGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDLAEI 131
Query: 478 LQ 479
LQ
Sbjct: 132 LQ 133
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 541 GACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSND-- 598
GA VN + L A +G+ EIV++LL +GADVN + G TA ++ + D
Sbjct: 70 GADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 599 NIVRKL 604
I++KL
Sbjct: 130 EILQKL 135
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDR 119
L A + EV L++ G DVN + G T L++A ++V +L+ HGA+VN
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 120 DEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSED 170
D G TPLHLA G+ IV+ LL ADV A+ T N +ED
Sbjct: 77 DNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 60/97 (61%), Gaps = 4/97 (4%)
Query: 526 VRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWK-GYEEIVDLLLDNGADVNFKSATG 584
R+ + DEV+ + +GA VN +++R+G+ +++A + EIV++LL +GADVN G
Sbjct: 22 ARAGQDDEVRILMANGADVN-ANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 585 FTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKT 621
T LH+A F + IV LL HGA + +D K GKT
Sbjct: 81 STPLHLAALF-GHLEIVEVLLKHGADVNAQD-KFGKT 115
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 212 VELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKA 271
V +L+ AD N + PL A + + ++IVE L DV+ D D ++ LH A
Sbjct: 30 VRILMANGADVNANDRKGNTPL-HLAADYDHLEIVEVLL-KHGADVNAHDNDGSTPLHLA 87
Query: 272 CHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYL 318
G+L+IV++L+K D+NAQ+++ F I + + +AE L
Sbjct: 88 ALFGHLEIVEVLLKHGADVNAQDKF--GKTAFDISIDNGNEDLAEIL 132
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 40/130 (30%)
Query: 94 LYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKC 153
L A G V +L+ +GA+VN D KG TPLHLA + IV+ LL ADV
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV---- 73
Query: 154 SMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVE 213
+A+ ++ ST PLH A + +L +VE
Sbjct: 74 ----------NAHDNDGST--------------------------PLHLAALFGHLEIVE 97
Query: 214 LLIKCKADTN 223
+L+K AD N
Sbjct: 98 VLLKHGADVN 107
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN G T LH+A + + IV LL HGA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADY-DHLEIVEVLLKHGADV 73
Query: 612 DMKDGKTGKTPL 623
+ D G TPL
Sbjct: 74 NAHD-NDGSTPL 84
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 375 GDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
G D+ LL AA+ + L+ GA+VN + R + A Y
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAND---------RKGNTPLHLAADY---- 57
Query: 435 KNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
+++E+V++LL HGADVN N PL +A G +IV+ L +GA ++ ++
Sbjct: 58 -DHLEIVEVLLKHGADVNAHDND-GSTPLHLAALFGHLEIVEVLLKHGADVNAQD 110
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NA TPL AA + L+ + L++ GA+VN A
Sbjct: 27 DDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN-----------A 75
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+D L H +E+V++LL HGADVN +K + ++I +G+ + +
Sbjct: 76 HDNDGSTPLHLAALFGH---LEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDLAEI 131
Query: 478 LQ 479
LQ
Sbjct: 132 LQ 133
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 249 FLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMG 308
L + DV+ +D N+ LH A +L+IV++L+K D+NA + P+ A G
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFG 91
Query: 309 RKHTHVAEYLLQQ 321
H + E LL+
Sbjct: 92 --HLEIVEVLLKH 102
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 541 GACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSND-- 598
GA VN + L A G+ EIV++LL +GADVN + G TA ++ + D
Sbjct: 70 GADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 599 NIVRKL 604
I++KL
Sbjct: 130 EILQKL 135
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 71 EVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
EV L++ G DVN G T L++A +G ++V +L+ HGA+VN D G TPLHLA
Sbjct: 29 EVRILMANG-ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLA 87
Query: 131 CYLGNKNIVKFLLSKKADVRAK 152
+G+ IV+ LL ADV A+
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQ 109
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSA 165
V +L+ +GA+VN D+ G TPLHLA G+ IV+ LL ADV A S TP L ++A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTP-LHLAA 88
Query: 166 NMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIK 217
+ EI+ +L+E GA+V + F + ++ N + E+L K
Sbjct: 89 TVGH-----LEIVEVLLEYGADVNAQDKFGK-TAFDISIDNGNEDLAEILQK 134
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN + + L A +G+ EIV++LL +GADVN + G T
Sbjct: 23 RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRT 82
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKT 621
LH+A + IV LL +GA + +D K GKT
Sbjct: 83 PLHLAATV-GHLEIVEVLLEYGADVNAQD-KFGKT 115
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 16/133 (12%)
Query: 347 KVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNL 406
K++ T+ + D++ + ++ ++NA D +TPL AAK L+ + L++ GA+VN
Sbjct: 17 KLLEATRAGQDDEV-RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN- 74
Query: 407 TETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVA 466
+SD R+ L A ++E+V++LL +GADVN +K + ++
Sbjct: 75 ------------ASDSWGRTPLHLAAT-VGHLEIVEVLLEYGADVN-AQDKFGKTAFDIS 120
Query: 467 IQSGDFQIVKELQ 479
I +G+ + + LQ
Sbjct: 121 IDNGNEDLAEILQ 133
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ G ++ V +L+ NGADVN G T LH+A + + IV LL HGA
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAK-RGHLEIVEVLLKHGADV 73
Query: 612 DMKDGKTGKTPLKHA 626
+ D G+TPL A
Sbjct: 74 NASD-SWGRTPLHLA 87
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 36/119 (30%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V M +PLH A + +L +VE+L+K AD N
Sbjct: 30 VRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-------------- 74
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
SD + LH A VG+L+IV++L++ D+NAQ+++
Sbjct: 75 ---------------------ASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 250 LNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGR 309
L + DV+ D + LH A G+L+IV++L+K D+NA + + P+ A +G
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVG- 91
Query: 310 KHTHVAEYLLQ 320
H + E LL+
Sbjct: 92 -HLEIVEVLLE 101
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
++ GA VN S + L A G+ EIV++LL+ GADVN + G TA ++
Sbjct: 67 LKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 114/282 (40%), Gaps = 55/282 (19%)
Query: 59 LLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVND 118
LL AV + + V+ LL G + ++ + G T L+ A+ +V LL+ HGA+
Sbjct: 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 87
Query: 119 RDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEII 178
R + G TP LA G+ ++K LSK ADV +C
Sbjct: 88 RKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECD------------------------ 122
Query: 179 SMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNL--IVKVNQEPL--- 233
F F+ A V + ++ L K A+ NL K +QE L
Sbjct: 123 ---------------FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 167
Query: 234 ----LFFAIESNSVKIVEAFLNSKNFDVSISDG-DLNSLLHKACHVGNLQ---IVQMLVK 285
L A E V++++ L+ DV+ D N+L+H + I +L+
Sbjct: 168 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 227
Query: 286 RKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
D+N + P+ A+ +KH + + LL+Q+ I +N
Sbjct: 228 HGADVNVRGERGKTPLILAV--EKKHLGLVQRLLEQEHIEIN 267
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 133/282 (47%), Gaps = 14/282 (4%)
Query: 16 SVKESSYRHHHLFSEIMFSEE-DAFGYFLQGIINSS-SAKSVELTLLCSAVWDNKIREVE 73
S + ++ +HL + + +E+ D L+G N + + T L +AV ++ VE
Sbjct: 17 SGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE 76
Query: 74 FLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYL 133
LL G V K ++G T +A + G K++ L + GA+VN+ D G+T A
Sbjct: 77 LLLRHGADPVLRK-KNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY 135
Query: 134 GNKNIVKFLLSKKADV--RAKCSMMVTPILAVSANMSEDSTDTN--EIISMLI-ENGANV 188
G +KFL + A+V R K + A D+ + E++ +L+ E GA+V
Sbjct: 136 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 195
Query: 189 REKMPFTDFSPLHFAVVKKNLSVVE----LLIKCKADTNLIVKVNQEPLLFFAIESNSVK 244
+ +H A++ + S VE LL+ AD N+ + + PL+ A+E +
Sbjct: 196 NACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL-AVEKKHLG 253
Query: 245 IVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKR 286
+V+ L ++ +++ +D D + L A + +I ++L KR
Sbjct: 254 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 295
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 94/237 (39%), Gaps = 46/237 (19%)
Query: 382 LLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMV 441
L+ A ++ D+ + L++ GANVN E + + +A+Q + + ++V
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP--------LHNAVQMSRE-----DIV 75
Query: 442 KLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYL---------- 491
+LLL HGAD K P +A +G +++K + GA +++ ++
Sbjct: 76 ELLLRHGADPV-LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 134
Query: 492 -----------KNKEAARIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIED 540
K + T E +ER + EV K + D
Sbjct: 135 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA-----EKGHVEVLKILLD 189
Query: 541 --GACVNVSSERRGSALIYVAWKG----YEEIVDLLLDNGADVNFKSATGFTALHMA 591
GA VN +ALI+ E I LLLD+GADVN + G T L +A
Sbjct: 190 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 246
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 24/227 (10%)
Query: 265 NSLLHKACHVGNLQIVQMLVKRKFDINAQNRYF-LPPMFFAIGMGRKHTHVAEYLLQQDS 323
N LL KA ++ +VQ L++ ++N Q P+ A+ M R+ + E LL+ +
Sbjct: 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED--IVELLLRHGA 83
Query: 324 INVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLL 383
V +++ N +++ V +++K + + ++N T +
Sbjct: 84 DPV---LRKKNGATPFILAAIAGSV----------KLLKLFLSKGADVNECDFYGFTAFM 130
Query: 384 FAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKL 443
AA + +++ K+L ++GANVNL K R +AL A + K ++E++K+
Sbjct: 131 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA---TALMDAAE-KGHVEVLKI 186
Query: 444 LLLH-GADVNDTSNKPKQKPLAVAIQSGDFQ---IVKELQNYGAQID 486
LL GADVN N + + + S D I L ++GA ++
Sbjct: 187 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 233
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L AV + V+ LL ++N+ DG+TAL +A+ L K+ LL GA+ +
Sbjct: 241 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 300
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 71 EVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
EV L++ G DVN G T L++A +G ++V +L+ HGA+VN D G TPLHLA
Sbjct: 29 EVRILMANG-ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLA 87
Query: 131 CYLGNKNIVKFLLSKKADVRAK 152
+G+ IV+ LL ADV A+
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQ 109
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN + + L A +G+ EIV++LL +GADVN G T
Sbjct: 23 RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRT 82
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKT 621
LH+A + IV LL +GA + +D K GKT
Sbjct: 83 PLHLAATV-GHLEIVEVLLEYGADVNAQD-KFGKT 115
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSA 165
V +L+ +GA+VN D+ G TPLHLA G+ IV+ LL ADV A TP L ++A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTP-LHLAA 88
Query: 166 NMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIK 217
+ EI+ +L+E GA+V + F + ++ N + E+L K
Sbjct: 89 TVGH-----LEIVEVLLEYGADVNAQDKFGK-TAFDISIDNGNEDLAEILQK 134
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 16/133 (12%)
Query: 347 KVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNL 406
K++ T+ + D++ + ++ ++NA D +TPL AAK L+ + L++ GA+VN
Sbjct: 17 KLLEATRAGQDDEV-RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN- 74
Query: 407 TETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVA 466
+SD R+ L A ++E+V++LL +GADVN +K + ++
Sbjct: 75 ------------ASDIWGRTPLHLAAT-VGHLEIVEVLLEYGADVN-AQDKFGKTAFDIS 120
Query: 467 IQSGDFQIVKELQ 479
I +G+ + + LQ
Sbjct: 121 IDNGNEDLAEILQ 133
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ G ++ V +L+ NGADVN G T LH+A + + IV LL HGA
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAK-RGHLEIVEVLLKHGADV 73
Query: 612 DMKDGKTGKTPLKHA 626
+ D G+TPL A
Sbjct: 74 NASD-IWGRTPLHLA 87
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 36/119 (30%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V M +PLH A + +L +VE+L+K AD N
Sbjct: 30 VRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-------------- 74
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
SD + LH A VG+L+IV++L++ D+NAQ+++
Sbjct: 75 ---------------------ASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 250 LNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGR 309
L + DV+ D + LH A G+L+IV++L+K D+NA + + P+ A +G
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVG- 91
Query: 310 KHTHVAEYLLQ 320
H + E LL+
Sbjct: 92 -HLEIVEVLLE 101
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
++ GA VN S + L A G+ EIV++LL+ GADVN + G TA ++
Sbjct: 67 LKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 114/282 (40%), Gaps = 55/282 (19%)
Query: 59 LLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVND 118
LL AV + + V+ LL G + ++ + G T L+ A+ +V LL+ HGA+
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 119 RDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEII 178
R + G TP LA G+ ++K LSK ADV +C
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECD------------------------ 102
Query: 179 SMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNL--IVKVNQEPL--- 233
F F+ A V + ++ L K A+ NL K +QE L
Sbjct: 103 ---------------FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 147
Query: 234 ----LFFAIESNSVKIVEAFLNSKNFDVSISDG-DLNSLLHKACHVGNLQ---IVQMLVK 285
L A E V++++ L+ DV+ D N+L+H + I +L+
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 286 RKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
D+N + P+ A+ +KH + + LL+Q+ I +N
Sbjct: 208 HGADVNVRGERGKTPLILAV--EKKHLGLVQRLLEQEHIEIN 247
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 12/224 (5%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
VE LL G V K ++G T +A + G K++ L + GA+VN+ D G+T A
Sbjct: 55 VELLLRHGADPVLRK-KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 113
Query: 132 YLGNKNIVKFLLSKKADV--RAKCSMMVTPILAVSANMSEDSTDTN--EIISMLI-ENGA 186
G +KFL + A+V R K + A D+ + E++ +L+ E GA
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173
Query: 187 NVREKMPFTDFSPLHFAVVKKNLSVVE----LLIKCKADTNLIVKVNQEPLLFFAIESNS 242
+V + +H A++ + S VE LL+ AD N+ + + PL+ A+E
Sbjct: 174 DVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL-AVEKKH 231
Query: 243 VKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKR 286
+ +V+ L ++ +++ +D D + L A + +I ++L KR
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 110/270 (40%), Gaps = 49/270 (18%)
Query: 382 LLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMV 441
L+ A ++ D+ + L++ GANVN E + + +A+Q + + ++V
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP--------LHNAVQMSRE-----DIV 55
Query: 442 KLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYL---------- 491
+LLL HGAD K P +A +G +++K + GA +++ ++
Sbjct: 56 ELLLRHGADPV-LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 114
Query: 492 -----------KNKEAARIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIED 540
K + T E +ER + EV K + D
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA-----EKGHVEVLKILLD 169
Query: 541 --GACVNVSSERRGSALIYVAWKG----YEEIVDLLLDNGADVNFKSATGFTALHMACRF 594
GA VN +ALI+ E I LLLD+GADVN + G T L +A
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE- 228
Query: 595 HSNDNIVRKLLHHGAYYDMKDGKT-GKTPL 623
+ +V++LL + ++ D + GKT L
Sbjct: 229 KKHLGLVQRLLEQ-EHIEINDTDSDGKTAL 257
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 36/233 (15%)
Query: 265 NSLLHKACHVGNLQIVQMLVKRKFDINAQNRYF-LPPMFFAIGMGRKHTHVAEYLLQQDS 323
N LL KA ++ +VQ L++ ++N Q P+ A+ M R+ + E LL+ +
Sbjct: 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED--IVELLLRHGA 63
Query: 324 INVNLPIKR------PNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDD 377
P+ R P LL S+K ++K + + ++N
Sbjct: 64 D----PVLRKKNGATPFLLAAIAGSVK---------------LLKLFLSKGADVNECDFY 104
Query: 378 MITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNN 437
T + AA + +++ K+L ++GANVNL K R +AL A + K +
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG---ATALMDAAE-KGH 160
Query: 438 IEMVKLLLLH-GADVNDTSNKPKQKPLAVAIQSGDFQ---IVKELQNYGAQID 486
+E++K+LL GADVN N + + + S D I L ++GA ++
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 213
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 19/174 (10%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTG------DHDVNEKLQDGRTALYMAILQGLYKMVTLLI 110
+TLL A +N+I V++ +S G D+N T L+ A QG MV L+
Sbjct: 43 VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS------TPLHWATRQGHLSMVVQLM 96
Query: 111 HHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPIL-AVSANMSE 169
+GA+ + D +G + +HLA G+ +IV +L++K DV +TP++ A S
Sbjct: 97 KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV 156
Query: 170 DSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
D T +L+ +V + + LH+AV+ N +V+ LL++ A+ +
Sbjct: 157 DPT------RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD 204
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 12/197 (6%)
Query: 101 GLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI 160
G+Y+ L+ G +V D++ T LH A ++VK+ +SK A V + +
Sbjct: 20 GIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP 79
Query: 161 LAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKA 220
L + S ++ L++ GA+ + S +H A + S+V LI
Sbjct: 80 LHWATRQGHLS-----MVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 221 DTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGD---LNSLLHKACHVGNL 277
D +++ + PL++ A ++SV L F+VS++ GD N+ LH A GN
Sbjct: 134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLL---TFNVSVNLGDKYHKNTALHWAVLAGNT 190
Query: 278 QIVQMLVKRKFDINAQN 294
++ +L++ +++AQN
Sbjct: 191 TVISLLLEAGANVDAQN 207
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 528 SNKYDEVKKNIEDGACVN-VSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
+N+ D VK I GA V+ + + + L + +G+ +V L+ GAD + G +
Sbjct: 52 NNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCS 111
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
+H+A +F + +IV L+ G DM D + G TPL A
Sbjct: 112 CIHLAAQF-GHTSIVAYLIAKGQDVDMMD-QNGMTPLMWA 149
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 92 TALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
TAL+ A+L G +++LL+ GANV+ ++ KG + L LA
Sbjct: 179 TALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 110/225 (48%), Gaps = 16/225 (7%)
Query: 88 QDGRTALYMAILQG----LYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLL 143
+DG T L++A++QG ++++V L G ++ + TPLHLA ++V+ L+
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66
Query: 144 SKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISML--IENGANVREKMPFTDFSPLH 201
+ A M + +A+++ + + ++L G E + + LH
Sbjct: 67 TAGAS-----PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121
Query: 202 FAVVKKNLSVVELLIKCKADTNLI-VKVNQEPLLFFAIESNSVKIVEAFL-NSKNFDVSI 259
AV + V+LL++ AD + + +K + PL+ A+E+NS+ +V+ L + N + +
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH-AVENNSLSMVQLLLQHGANVNAQM 180
Query: 260 SDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFA 304
G +S LH A G L +V+ LV+ D + +N + P+ A
Sbjct: 181 YSG--SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 48/105 (45%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
LT L AV V+ LL G ++ GR+ L A+ MV LL+ HGANV
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPIL 161
N + G + LH A G +V+ L+ AD K TP++
Sbjct: 177 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM 221
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 570 LLDNGA----DVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKH 625
LLD+ A D+ ++ G TALH+A + V+ LL GA D D K+G++PL H
Sbjct: 98 LLDSAAPGTLDLEARNYDGLTALHVAVNTECQET-VQLLLERGADIDAVDIKSGRSPLIH 156
Query: 626 A 626
A
Sbjct: 157 A 157
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 41/160 (25%)
Query: 77 STGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEK-GYTPLHLACYLGN 135
+ G D+ + DG TAL++A+ + V LL+ GA+++ D K G +PL A +
Sbjct: 103 APGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162
Query: 136 KNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFT 195
++V+ LL ++GANV +M ++
Sbjct: 163 LSMVQLLL---------------------------------------QHGANVNAQM-YS 182
Query: 196 DFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLF 235
S LH A + L +V L++ AD++L N PL+
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDR 119
L AV +N + V+ LL G +VN ++ G +AL+ A +GL +V L+ GA+ + +
Sbjct: 154 LIHAVENNSLSMVQLLLQHGA-NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 212
Query: 120 DEKGYTPLHLA 130
+ TPL +A
Sbjct: 213 NCHNDTPLMVA 223
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 439 EMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENY 490
E V+LLL GAD++ K + PL A+++ +V+ L +GA ++ + Y
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 181
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 526 VRSNKYDEVKKNIEDGA---CVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSA 582
V + + V+ +E GA V++ S R S LI+ +V LLL +GA+VN +
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGR--SPLIHAVENNSLSMVQLLLQHGANVNAQMY 181
Query: 583 TGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPL 623
+G +ALH A +VR L+ GA +K+ TPL
Sbjct: 182 SGSSALHSAS-GRGLLPLVRTLVRSGADSSLKNCHN-DTPL 220
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Query: 368 TENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSA 427
T ++ A D +T L A ++ + L+++GA+++ + + RS
Sbjct: 106 TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSG------------RSP 153
Query: 428 LQYACKHKNNIEMVKLLLLHGADVN 452
L +A + N++ MV+LLL HGA+VN
Sbjct: 154 LIHAVE-NNSLSMVQLLLQHGANVN 177
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ +GA VN + + L A G+ EIV++LL NGADVN TG T
Sbjct: 23 RAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRT 82
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKT 621
LH+A + + IV LL HGA + +D K GKT
Sbjct: 83 PLHLAA-WADHLEIVEVLLKHGADVNAQD-KFGKT 115
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 9/113 (7%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI-LAVS 164
V +L +GA+VN D G+TPLHLA LG+ IV+ LL ADV A + TP+ LA
Sbjct: 30 VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAW 89
Query: 165 ANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIK 217
A D EI+ +L+++GA+V + F + ++ N + E+L K
Sbjct: 90 A-------DHLEIVEVLLKHGADVNAQDKFGK-TAFDISIDNGNEDLAEILQK 134
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 66 DNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYT 125
D+++R +L+ DVN G T L++A + G ++V +L+ +GA+VN G T
Sbjct: 27 DDEVR----ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRT 82
Query: 126 PLHLACYLGNKNIVKFLLSKKADVRAK 152
PLHLA + + IV+ LL ADV A+
Sbjct: 83 PLHLAAWADHLEIVEVLLKHGADVNAQ 109
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 16/107 (14%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L NGA+V + +PLH A + +L +VE+L+K AD N + P L A
Sbjct: 30 VRILTANGADVNAN-DYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTP-LHLA 87
Query: 238 IESNSVKIVEAFL------NSKN------FDVSISDG--DLNSLLHK 270
++ ++IVE L N+++ FD+SI +G DL +L K
Sbjct: 88 AWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L NGADVN G T LH+A + IV LL +GA
Sbjct: 15 GKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAML-GHLEIVEVLLKNGADV 73
Query: 612 DMKDGKTGKTPLKHA 626
+ G TG+TPL A
Sbjct: 74 NAT-GNTGRTPLHLA 87
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 375 GDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
G D+ LL AA+ + L GA+VN ++D+ + L A
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILTANGADVN-------------ANDYWGHTPLHLAAM- 56
Query: 435 KNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
++E+V++LL +GADVN T N + PL +A + +IV+ L +GA ++ ++
Sbjct: 57 LGHLEIVEVLLKNGADVNATGNTGR-TPLHLAAWADHLEIVEVLLKHGADVNAQD 110
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
+++GA VN + + L AW + EIV++LL +GADVN + G TA ++
Sbjct: 67 LKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 15/100 (15%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
TPL AA L+ + L++ GA+VN T R+ L A +++E
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNTG-------------RTPLHLAA-WADHLE 94
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQ 479
+V++LL HGADVN +K + ++I +G+ + + LQ
Sbjct: 95 IVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 250 LNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGR 309
L + DV+ +D ++ LH A +G+L+IV++L+K D+NA P+ A
Sbjct: 33 LTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWA-- 90
Query: 310 KHTHVAEYLLQQ 321
H + E LL+
Sbjct: 91 DHLEIVEVLLKH 102
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDR 119
L A + EV L++ G DVN + + G T L++A + ++V +L+ +GA+VN
Sbjct: 18 LLEAARAGQDDEVRILMANG-ADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 120 DEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
D G TPLHL G+ IV+ LL ADV A+
Sbjct: 77 DAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQ 109
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA VN + + L A + EIV++LL NGADVN A G T
Sbjct: 23 RAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGET 82
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKT 621
LH+ + + IV LL HGA + +D K GKT
Sbjct: 83 PLHLVAMY-GHLEIVEVLLKHGADVNAQD-KFGKT 115
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 20/109 (18%)
Query: 178 ISMLIENGA--NVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLF 235
+ +L+ NGA N +K+ T PLH A + +L +VE+L+K AD N I + + PL
Sbjct: 30 VRILMANGADVNAEDKVGLT---PLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHL 86
Query: 236 FAIESNSVKIVEAFL------NSKN------FDVSISDG--DLNSLLHK 270
A+ + ++IVE L N+++ FD+SI +G DL +L K
Sbjct: 87 VAMYGH-LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 10/91 (10%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP--ILAV 163
V +L+ +GA+VN D+ G TPLHLA + IV+ LL ADV A ++ TP ++A+
Sbjct: 30 VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAM 89
Query: 164 SANMSEDSTDTNEIISMLIENGANVREKMPF 194
++ EI+ +L+++GA+V + F
Sbjct: 90 YGHL--------EIVEVLLKHGADVNAQDKF 112
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN + G T LH+A + + IV LL +GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAA-MNDHLEIVEVLLKNGADV 73
Query: 612 DMKDGKTGKTPL 623
+ D G+TPL
Sbjct: 74 NAID-AIGETPL 84
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
D ++ ++ ++NAE +TPL AA + L+ + L++ GA+VN
Sbjct: 27 DDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN------------ 74
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+ D + L + ++E+V++LL HGADVN +K + ++I +G+ + +
Sbjct: 75 -AIDAIGETPLHLVAMY-GHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDLAEI 131
Query: 478 LQ 479
LQ
Sbjct: 132 LQ 133
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+++GA VN + L VA G+ EIV++LL +GADVN + G TA ++ +
Sbjct: 67 LKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 598 D--NIVRKL 604
D I++KL
Sbjct: 127 DLAEILQKL 135
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 47 INSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMV 106
+N + + T L A N++ VE+LL G DV+ K + G L+ A G Y++
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDKGGLVPLHNACSYGHYEVA 93
Query: 107 TLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI 160
LL+ HGA VN D +TPLH A G I K LL AD K TP+
Sbjct: 94 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
TPL FAA + + +YL+Q GA+V+ + D L AC + + E
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVH-------------AKDKGGLVPLHNACSY-GHYE 91
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARI 499
+ +LL+ HGA VN ++ K PL A G ++I K L +GA K+N N +
Sbjct: 92 VAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV 150
Query: 500 AHSTTELEE 508
T++++
Sbjct: 151 KDGDTDIQD 159
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 550 RRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA 609
R+ + L + A +V+ LL +GADV+ K G LH AC + + + L+ HGA
Sbjct: 43 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY-GHYEVAELLVKHGA 101
Query: 610 YYDMKDGKTGKTPLKHAEA 628
++ D TPL A A
Sbjct: 102 VVNVAD-LWKFTPLHEAAA 119
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 230 QEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFD 289
Q L FA N V +VE +L DV D LH AC G+ ++ ++LVK
Sbjct: 44 QSTPLHFAAGYNRVSVVE-YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 102
Query: 290 INAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQ 321
+N + + P+ A G+ + + LLQ
Sbjct: 103 VNVADLWKFTPLHEAAAKGK--YEICKLLLQH 132
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 531 YDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHM 590
Y+ + ++ GA VNV+ + + L A KG EI LLL +GAD K+ G T L +
Sbjct: 90 YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDV 257
+PLHFA +SVVE L++ AD + K P L A ++ E + V
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVP-LHNACSYGHYEVAELLVKHGAV-V 103
Query: 258 SISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNR 295
+++D + LH+A G +I ++L++ D +NR
Sbjct: 104 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR 141
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 360 IIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARS 419
+++ ++ +++A+ + PL A + + A+ L++ GA VN+ + K
Sbjct: 59 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK-------- 110
Query: 420 SDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQI 474
F + A K K E+ KLLL HGAD N+ PL + ++ GD I
Sbjct: 111 ----FTPLHEAAAKGK--YEICKLLLQHGADPT-KKNRDGNTPLDL-VKDGDTDI 157
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 47 INSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMV 106
+N + + T L A N++ VE+LL G DV+ K + G L+ A G Y++
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDKGGLVPLHNACSYGHYEVA 91
Query: 107 TLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI 160
LL+ HGA VN D +TPLH A G I K LL AD K TP+
Sbjct: 92 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
TPL FAA + + +YL+Q GA+V+ + D L AC + + E
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVH-------------AKDKGGLVPLHNACSY-GHYE 89
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARI 499
+ +LL+ HGA VN ++ K PL A G ++I K L +GA K+N N +
Sbjct: 90 VAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV 148
Query: 500 AHSTTELEE 508
T++++
Sbjct: 149 KDGDTDIQD 157
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 550 RRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA 609
R+ + L + A +V+ LL +GADV+ K G LH AC + + + L+ HGA
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY-GHYEVAELLVKHGA 99
Query: 610 YYDMKDGKTGKTPLKHAEA 628
++ D TPL A A
Sbjct: 100 VVNVAD-LWKFTPLHEAAA 117
Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 230 QEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFD 289
Q L FA N V +VE +L DV D LH AC G+ ++ ++LVK
Sbjct: 42 QSTPLHFAAGYNRVSVVE-YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100
Query: 290 INAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQ 321
+N + + P+ A G+ + + LLQ
Sbjct: 101 VNVADLWKFTPLHEAAAKGK--YEICKLLLQH 130
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 531 YDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHM 590
Y+ + ++ GA VNV+ + + L A KG EI LLL +GAD K+ G T L +
Sbjct: 88 YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDV 257
+PLHFA +SVVE L++ AD + K P L A ++ E + V
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVP-LHNACSYGHYEVAELLVKHGAV-V 101
Query: 258 SISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNR 295
+++D + LH+A G +I ++L++ D +NR
Sbjct: 102 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR 139
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 360 IIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARS 419
+++ ++ +++A+ + PL A + + A+ L++ GA VN+ + K
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK-------- 108
Query: 420 SDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQI 474
F + A K K E+ KLLL HGAD N+ PL + ++ GD I
Sbjct: 109 ----FTPLHEAAAKGK--YEICKLLLQHGADPT-KKNRDGNTPLDL-VKDGDTDI 155
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 47 INSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMV 106
+N + + T L A N++ VE+LL G DV+ K + G L+ A G Y++
Sbjct: 37 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDKGGLVPLHNACSYGHYEVA 95
Query: 107 TLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI 160
LL+ HGA VN D +TPLH A G I K LL AD K TP+
Sbjct: 96 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
TPL FAA + + +YL+Q GA+V+ + D L AC + + E
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVH-------------AKDKGGLVPLHNACSY-GHYE 93
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARI 499
+ +LL+ HGA VN ++ K PL A G ++I K L +GA K+N N +
Sbjct: 94 VAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV 152
Query: 500 AHSTTELEE 508
T++++
Sbjct: 153 KDGDTDIQD 161
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 550 RRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA 609
R+ + L + A +V+ LL +GADV+ K G LH AC + + + L+ HGA
Sbjct: 45 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY-GHYEVAELLVKHGA 103
Query: 610 YYDMKDGKTGKTPLKHAEA 628
++ D TPL A A
Sbjct: 104 VVNVAD-LWKFTPLHEAAA 121
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 230 QEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFD 289
Q L FA N V +VE +L DV D LH AC G+ ++ ++LVK
Sbjct: 46 QSTPLHFAAGYNRVSVVE-YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 104
Query: 290 INAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQ 321
+N + + P+ A G+ + + LLQ
Sbjct: 105 VNVADLWKFTPLHEAAAKGK--YEICKLLLQH 134
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 360 IIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARS 419
+++ ++ +++A+ + PL A + + A+ L++ GA VN+ + K
Sbjct: 61 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK-------- 112
Query: 420 SDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQ 479
F + A K K E+ KLLL HGAD N+ PL + ++ GD I L+
Sbjct: 113 ----FTPLHEAAAKGK--YEICKLLLQHGADPT-KKNRDGNTPLDL-VKDGDTDIQDLLR 164
Query: 480 NYGAQID 486
A +D
Sbjct: 165 GDAALLD 171
Score = 32.7 bits (73), Expect = 0.78, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 531 YDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHM 590
Y+ + ++ GA VNV+ + + L A KG EI LLL +GAD K+ G T L +
Sbjct: 92 YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 151
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDV 257
+PLHFA +SVVE L++ AD + K P L A ++ E + V
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVP-LHNACSYGHYEVAELLVKHGAV-V 105
Query: 258 SISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNR 295
+++D + LH+A G +I ++L++ D +NR
Sbjct: 106 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR 143
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 10/173 (5%)
Query: 88 QDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSK-K 146
+D RT L A + V LI GA V+ +D +G T LHLA G+ +V++LLS +
Sbjct: 42 EDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101
Query: 147 ADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVK 206
DV + TP++ + D ++ +L+ G+++ + + LH+A
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKHVD------LVKLLLSKGSDINIRDNEENIC-LHWAAFS 154
Query: 207 KNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSI 259
+ + E+L+ K D + V ++ + L A N V FL S++ DV++
Sbjct: 155 GCVDIAEILLAAKCDLH-AVNIHGDSPLHIAARENRYDCVVLFL-SRDSDVTL 205
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 10/218 (4%)
Query: 88 QDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKA 147
Q+ R+ L+ A G + +L+ GAN++ E TPL A + VK+L+ A
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 148 DVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKK 207
V K + T L ++A E++ L+ NG ++P+ +A K
Sbjct: 69 LVDPKDAEGST-CLHLAAKKGH-----YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 208 NLSVVELLIKCKADTNLIVKVNQEPL-LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNS 266
++ +V+LL+ +D N ++ N+E + L +A S V I E L +K D+ + +S
Sbjct: 123 HVDLVKLLLSKGSDIN--IRDNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDS 179
Query: 267 LLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFA 304
LH A V + + R D+ +N+ P+ A
Sbjct: 180 PLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
V++LLS G DVN + G T + A +V LL+ G+++N RD + LH A
Sbjct: 93 VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA 152
Query: 132 YLGNKNIVKFLLSKKADVRA 151
+ G +I + LL+ K D+ A
Sbjct: 153 FSGCVDIAEILLAAKCDLHA 172
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 28/158 (17%)
Query: 459 KQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAHSTTELEERXXXXXXXXX 518
K+ PL A ++G I L GA ID T ++R
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANID----------------TCSEDQRTPLMEA--- 51
Query: 519 XXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGA-DV 577
+N + VK I+ GA V+ + L A KG+ E+V LL NG DV
Sbjct: 52 -------AENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
Query: 578 NFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKD 615
N + G+T + A + D +V+ LL G+ +++D
Sbjct: 105 NCQDDGGWTPMIWATEYKHVD-LVKLLLSKGSDINIRD 141
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 360 IIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARS 419
I ++ NI+ +D TPL+ AA++ L++ KYLI+ GA V+ DA
Sbjct: 26 ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD--------PKDAEG 77
Query: 420 SDFCFRSALQYACKHKNNIEMVKLLLLHGA-DVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
S + L A K K + E+V+ LL +G DVN + P+ A + +VK L
Sbjct: 78 S-----TCLHLAAK-KGHYEVVQYLLSNGQMDVN-CQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 479 QNYGAQID 486
+ G+ I+
Sbjct: 131 LSKGSDIN 138
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 97/240 (40%), Gaps = 51/240 (21%)
Query: 266 SLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSIN 325
S LH A G++ I MLV+ +I+ + P+ A H +YL++
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEA--AENNHLEAVKYLIK----- 65
Query: 326 VNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLD------QIIKRIIDRTE-NINAEGDDM 378
+L DPK + L ++++ ++ + ++N + D
Sbjct: 66 --------------AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGG 111
Query: 379 ITPLLFAA--KHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKN 436
TP+++A KH DL K L+ KG+++N+ + ++ + C A C
Sbjct: 112 WTPMIWATEYKHVDL--VKLLLSKGSDINIRDNEE---------NICLHWAAFSGC---- 156
Query: 437 NIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEA 496
+++ ++LL D++ N PL +A + + V + D + LKNKE
Sbjct: 157 -VDIAEILLAAKCDLH-AVNIHGDSPLHIAARENRYDCVVLFLSR----DSDVTLKNKEG 210
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 107/258 (41%), Gaps = 44/258 (17%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVN-LTETQKAFISDARSSDFCFRSAL 428
N E + +PL AA+ + L+Q GAN++ +E Q+ + +A +
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN-------- 54
Query: 429 QYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKE 488
N++E VK L+ GA V D + L +A + G +++V+ L + G Q+D
Sbjct: 55 -------NHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNG-QMDVN 105
Query: 489 NYLKNKEAARIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSS 548
I TE + D VK + G+ +N+
Sbjct: 106 CQDDGGWTPMI--WATEYKH----------------------VDLVKLLLSKGSDINIRD 141
Query: 549 ERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHG 608
L + A+ G +I ++LL D++ + G + LH+A R + D +V L
Sbjct: 142 NEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVL-FLSRD 200
Query: 609 AYYDMKDGKTGKTPLKHA 626
+ +K+ K G+TPL+ A
Sbjct: 201 SDVTLKN-KEGETPLQCA 217
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 34/210 (16%)
Query: 425 RSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQ 484
RS L +A ++++ +L+ GA++ DT ++ ++ PL A ++ + VK L GA
Sbjct: 12 RSPL-HAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 485 IDKENYLKNKEAARIAHSTTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGAC- 543
+D K+ E + H + Y+ V+ + +G
Sbjct: 70 VDP----KDAEGSTCLH----------------------LAAKKGHYEVVQYLLSNGQMD 103
Query: 544 VNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRK 603
VN + + +I+ + ++V LLL G+D+N + LH A F +I
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWA-AFSGCVDIAEI 162
Query: 604 LLHHGAYYDMKDGKT-GKTPLKHAEAGKNR 632
LL A D+ G +PL H A +NR
Sbjct: 163 LL--AAKCDLHAVNIHGDSPL-HIAARENR 189
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 71 EVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
EV L++ G + L G + L++A G + +L+ G + + R + TPLH+A
Sbjct: 17 EVRILMANGAPFTTDWL--GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMA 74
Query: 131 CYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVRE 190
G+ NIV+ LL ADV AK + +T + + + + E++ +LI+ GA+V
Sbjct: 75 ASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH------NHQEVVELLIKYGADVHT 128
Query: 191 KMPF 194
+ F
Sbjct: 129 QSKF 132
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 178 ISMLIENGANVREKMPFT-DF---SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPL 233
+ +L+ NGA PFT D+ SPLH A + S E+L++ + KV++ PL
Sbjct: 18 VRILMANGA------PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPL 71
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
A E ++ IVE L DV+ D + LH A + ++V++L+K D++ Q
Sbjct: 72 HMAASEGHA-NIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129
Query: 294 NRY 296
+++
Sbjct: 130 SKF 132
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 72 VEFLLSTG-DHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
E LL G D K+ RT L+MA +G +V +L+ HGA+VN +D T LH A
Sbjct: 50 TEVLLRAGVSRDARTKVD--RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWA 107
Query: 131 CYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSED 170
++ +V+ L+ ADV + T N +ED
Sbjct: 108 TEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED 147
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 553 SALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA 609
+ L A +G+ IV++LL +GADVN K TALH A H++ +V L+ +GA
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE-HNHQEVVELLIKYGA 124
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 27/155 (17%)
Query: 130 ACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVR 189
A G + V+ L++ A + T L ++A ST +L+ G + R
Sbjct: 9 AARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFST-----TEVLLRAGVS-R 60
Query: 190 EKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNL--IVKVNQEPLLFFAIESNSVKIVE 247
+ D +PLH A + + ++VE+L+K AD N ++K+ L +A E N ++VE
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTA---LHWATEHNHQEVVE 117
Query: 248 AFLN------------SKNFDVSISDG--DLNSLL 268
+ FD+SI +G DL +L
Sbjct: 118 LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 526 VRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWK-GYEEIVDLLLDNGADVNFKSATG 584
R+ + DEV+ + +GA +++ G++ +++A + G+ ++LL G + ++
Sbjct: 10 ARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 585 FTALHMACRFHSNDNIVRKLLHHGAYYDMKD 615
T LHMA + NIV LL HGA + KD
Sbjct: 68 RTPLHMAAS-EGHANIVEVLLKHGADVNAKD 97
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 15/106 (14%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
+PL AA++ + + L++ G + DAR+ R+ L A + +
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVS-----------RDARTK--VDRTPLHMAAS-EGHAN 81
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQI 485
+V++LL HGADVN + K L A + ++V+ L YGA +
Sbjct: 82 IVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 39 FGYF------LQGIINSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRT 92
+G+F L+ ++ + V+ T L A + VE LL G DVN K T
Sbjct: 44 YGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA-DVNAKDMLKMT 102
Query: 93 ALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFL 142
AL+ A ++V LLI +GA+V+ + + T ++ GN+++ + L
Sbjct: 103 ALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKS 581
++ GA VN + +AL + ++E+V+LL+ GADV+ +S
Sbjct: 87 LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 83 VNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFL 142
VN D + L+ A L G V +L+ HGA VN +TPL AC G+ + V L
Sbjct: 29 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 88
Query: 143 LSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHF 202
L A V+ + S + +PI + E ++ LI G N+ K+ +PL+
Sbjct: 89 LQHGASVQPE-SDLASPIHEAA------RRGHVECVNSLIAYGGNIDHKISHLG-TPLYL 140
Query: 203 AVVKKNLSVVELLIKCKADTN 223
A + + V+ L++ AD N
Sbjct: 141 ACENQQRACVKKLLESGADVN 161
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 92 TALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRA 151
+ ++ A + G + LI G VN +PLH AC G+ + VK LL A V
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 152 KCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDF-SPLHFAVVKKNLS 210
+ TP+ + S D +++L+++GA+V+ P +D SP+H A + ++
Sbjct: 65 VTADWHTPLFNACVSGSWD------CVNLLLQHGASVQ---PESDLASPIHEAARRGHVE 115
Query: 211 VVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHK 270
V LI + + + P L+ A E+ V+ L S DV+ G +S LH
Sbjct: 116 CVNSLIAYGGNIDHKISHLGTP-LYLACENQQRACVKKLLES-GADVNQGKGQ-DSPLHA 172
Query: 271 ACHVGNLQIVQMLVKRKFDINAQN 294
+ ++ +L+ D A+N
Sbjct: 173 VARTASEELACLLMDFGADTQAKN 196
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 86/211 (40%), Gaps = 22/211 (10%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
+P+ AA H S + LI +G VN+ S L AC ++
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHV-------------SPLHEACL-GGHLS 50
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNK--EAA 497
VK+LL HGA VN + PL A SG + V L +GA + E+ L + EAA
Sbjct: 51 CVKILLKHGAQVNGVTAD-WHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAA 109
Query: 498 RIAH----STTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGS 553
R H ++ + + VKK +E GA VN + + S
Sbjct: 110 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDS 168
Query: 554 ALIYVAWKGYEEIVDLLLDNGADVNFKSATG 584
L VA EE+ LL+D GAD K+A G
Sbjct: 169 PLHAVARTASEELACLLMDFGADTQAKNAEG 199
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDV 257
SPLH A + +LS V++L+K A N + PL F A S S V L
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL-FNACVSGSWDCVNLLLQ---HGA 93
Query: 258 SI-SDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFA 304
S+ + DL S +H+A G+++ V L+ +I+ + + P++ A
Sbjct: 94 SVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLA 141
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 24/165 (14%)
Query: 250 LNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGR 309
L S+ + V+I D S LH+AC G+L V++L+K +N + P+F A G
Sbjct: 22 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG- 80
Query: 310 KHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQT--QIKRLDQI--IKRII 365
D + NLLL S++ ++ + R + + +I
Sbjct: 81 ----------SWDCV---------NLLLQHGASVQPESDLASPIHEAARRGHVECVNSLI 121
Query: 366 DRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQ 410
NI+ + + TPL A ++ K L++ GA+VN + Q
Sbjct: 122 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQ 166
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
I G VN+ + S L G+ V +LL +GA VN +A T L AC S
Sbjct: 23 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW 82
Query: 598 DNIVRKLLHHGA 609
D V LL HGA
Sbjct: 83 D-CVNLLLQHGA 93
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 26/157 (16%)
Query: 361 IKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA--R 418
+K ++ +N D TPL A L+Q GA+V + I +A R
Sbjct: 52 VKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARR 111
Query: 419 SSDFCFRSALQY-----------------ACKHKNNIEMVKLLLLHGADVNDTSNKPKQK 461
C S + Y AC+++ VK LL GADVN K +
Sbjct: 112 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR-ACVKKLLESGADVNQ--GKGQDS 168
Query: 462 PLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAAR 498
PL ++ ++ L ++GA + KN E R
Sbjct: 169 PLHAVARTASEELACLLMDFGA----DTQAKNAEGKR 201
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
+G TAL+ A+ G ++V L+ G NVN D G+TPLH A N + KFL+ A
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128
Query: 149 VRA 151
V A
Sbjct: 129 VFA 131
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 99 LQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVT 158
L+G + +V +I+ + + +++G T LH A G+ IVKFL+ +V A S T
Sbjct: 46 LEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWT 105
Query: 159 PILAVSANMSEDSTDTNEIISMLIENGANV 188
P+ + S + ++ L+E+GA V
Sbjct: 106 PLHCAA------SCNNVQVCKFLVESGAAV 129
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANV 404
+I+K ++ N+NA D TPL AA ++Q K+L++ GA V
Sbjct: 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 360 IIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARS 419
+++RII ++ + D+ IT L A + K+L+Q G NVN + SD +
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD------SDGWT 105
Query: 420 SDFCFRSALQYACKHKNNIEMVKLLLLHGADV 451
C S NN+++ K L+ GA V
Sbjct: 106 PLHCAASC--------NNVQVCKFLVESGAAV 129
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 562 GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA------YYDMK 614
G+ EIV L+ G +VN + G+T LH A + N + + L+ GA Y DM+
Sbjct: 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN-NVQVCKFLVESGAAVFAMTYSDMQ 138
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
+G TAL+ A+ G ++V L+ G NVN D G+TPLH A N + KFL+ A
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128
Query: 149 VRA 151
V A
Sbjct: 129 VFA 131
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 99 LQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVT 158
L+G + +V +I+ + + +++G T LH A G+ IVKFL+ +V A S T
Sbjct: 46 LEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWT 105
Query: 159 PILAVSANMSEDSTDTNEIISMLIENGANV 188
P+ + S + ++ L+E+GA V
Sbjct: 106 PLHCAA------SCNNVQVCKFLVESGAAV 129
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANV 404
+I+K ++ N+NA D TPL AA ++Q K+L++ GA V
Sbjct: 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 360 IIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARS 419
+++RII ++ + D+ IT L A + K+L+Q G NVN + SD +
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD------SDGWT 105
Query: 420 SDFCFRSALQYACKHKNNIEMVKLLLLHGADV 451
C S NN+++ K L+ GA V
Sbjct: 106 PLHCAASC--------NNVQVCKFLVESGAAV 129
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 562 GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA------YYDMK 614
G+ EIV L+ G +VN + G+T LH A + N + + L+ GA Y DM+
Sbjct: 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN-NVQVCKFLVESGAAVFAMTYSDMQ 138
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
TLL A I VE+LL G D N K G T L+ A G K+V LL+ H A VN
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGS-DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEI 177
+ +PLH A G+ +IVK LLS A A + P+ D TD +
Sbjct: 71 TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV---------DYTDDESM 121
Query: 178 ISMLI 182
S+L+
Sbjct: 122 KSLLL 126
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADV 149
G T L++A ++G V L+ +G++ N +D G+TPLH AC G+ +V+ LL KA V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 150 RAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGAN 187
+P+ + N D I+ +L+ GA+
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVD------IVKLLLSYGAS 101
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
T L A+ D+ S +YL+Q G SD D + L AC H +++
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNG-------------SDPNVKDHAGWTPLHEACNH-GHLK 57
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGA 483
+V+LLL H A VN T + PL A ++G IVK L +YGA
Sbjct: 58 VVELLLQHKALVNTTGYQ-NDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 548 SERRGSALIYVA-WKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLH 606
+ RG L+++A KG V+ LL NG+D N K G+T LH AC H + +V LL
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACN-HGHLKVVELLLQ 64
Query: 607 HGAYYDMKDGKTGKTPLKHAEAGKN 631
H A + G +PL +A KN
Sbjct: 65 HKALVNTT-GYQNDSPLH--DAAKN 86
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 193 PFTDF---SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAF 249
PFT+ + LH A +K ++ VE L++ +D N+ P L A +K+VE
Sbjct: 4 PFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTP-LHEACNHGHLKVVELL 62
Query: 250 LNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFF 303
L K V+ + +S LH A G++ IV++L+ NA N + L P+ +
Sbjct: 63 LQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 178 ISMLIENGA--NVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLF 235
+ L++NG+ NV++ +T PLH A +L VVELL++ KA N N P L
Sbjct: 26 VEYLLQNGSDPNVKDHAGWT---PLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP-LH 81
Query: 236 FAIESNSVKIVEAFLN 251
A ++ V IV+ L+
Sbjct: 82 DAAKNGHVDIVKLLLS 97
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 120 DEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIIS 179
+ +G T LH+A G+ V++LL +D K TP L + N +++
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTP-LHEACNHGH-----LKVVE 60
Query: 180 MLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIE 239
+L+++ A V + + SPLH A ++ +V+LL+ A N + P+ + E
Sbjct: 61 LLLQHKALVNTTG-YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119
Query: 240 S 240
S
Sbjct: 120 S 120
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 231 EPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDI 290
E LL A + VE L + + D ++ D + LH+AC+ G+L++V++L++ K +
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGS-DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 291 NAQNRYFLPPMFFAIGMGRKHTHVAEYLL 319
N P+ A G H + + LL
Sbjct: 70 NTTGYQNDSPLHDAAKNG--HVDIVKLLL 96
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 61/142 (42%)
Query: 91 RTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVR 150
+T L++A++ ++ L+ G + RD +G TPLHLAC G V L
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 151 AKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLS 210
+ T + I+ +L+ GA+V + P + LH AV +N
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 162
Query: 211 VVELLIKCKADTNLIVKVNQEP 232
+V LL+KC AD N + P
Sbjct: 163 LVSLLLKCGADVNRVTYQGYSP 184
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 72 VEFLLSTGDHDVN-EKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHL 129
VE L+S G DVN ++ +GRTAL++A+ +V+LL+ GA+VN +GY+P L
Sbjct: 130 VELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 187
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 562 GYEEIVDLLLDNGADVNFKS-ATGFTALHMACRFHSNDNIVRKLLHHGA 609
GY IV+LL+ GADVN + G TALH+A N ++V LL GA
Sbjct: 125 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ-NPDLVSLLLKCGA 172
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 188 VREKMPFTDF------SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESN 241
V+ + F +F +PLH AV+ + E L+ D L PL A E
Sbjct: 28 VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL-HLACEQG 86
Query: 242 ---SVKIVEAFLNSKNFDVSISDGDLN--SLLHKACHVGNLQIVQMLVKRKFDINAQ 293
SV ++ + + + + N + LH A G L IV++LV D+NAQ
Sbjct: 87 CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 143
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
V L ++D+N+ G + L+ A +G +V +LI GA +N + TPLHLA
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80
Query: 132 YLGNKNIVKFLLSKKADVRA 151
G+++IV+ LL KAD+ A
Sbjct: 81 SHGHRDIVQKLLQYKADINA 100
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 197 FSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFD 256
FSPLH+A + +VVE+LI A N++ + + P L A IV+ L K D
Sbjct: 40 FSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP-LHLAASHGHRDIVQKLLQYK-AD 97
Query: 257 VSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPM 301
++ + N LH AC G Q+ + LV ++ N+Y P+
Sbjct: 98 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 142
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 239 ESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFL 298
E N+V + N++N D++ D S LH AC G +V+ML+ R IN NR
Sbjct: 15 EGNAVAVRLWLDNTEN-DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD 73
Query: 299 PPMFFAIGMGRKHTHVAEYLLQ 320
P+ A G H + + LLQ
Sbjct: 74 TPLHLAASHG--HRDIVQKLLQ 93
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 541 GACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNI 600
GA +NV + + L A G+ +IV LL AD+N + G LH AC F D +
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC-FWGQDQV 120
Query: 601 VRKLLHHGAYYDMKDGKTGKTPLKHAEA 628
L+ +GA + + K G+ P+ A+A
Sbjct: 121 AEDLVANGALVSICN-KYGEMPVDKAKA 147
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 92 TALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKA 147
T L++A G +V L+ + A++N +E G PLH AC+ G + + L++ A
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 115 NVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDT 174
++N D+ G++PLH AC G +V+ L+ + A + TP+ +++ D
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRD---- 86
Query: 175 NEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPL 233
I+ L++ A++ + PLH+A V E L+ A ++ K + P+
Sbjct: 87 --IVQKLLQYKADINAVNEHGNV-PLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 142
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 346 PKVMSQ--TQIKRLDQIIKRI-IDRTENINAEGDDM-ITPLLFAAKHCDLQSAKYLIQKG 401
P+ M TQ + + + R+ +D TEN +GDD +PL +A + + LI +G
Sbjct: 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62
Query: 402 ANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQK 461
A +N+ R D + L A H + ++V+ LL + AD+N N+
Sbjct: 63 ARINVMN---------RGDD----TPLHLAASHGHR-DIVQKLLQYKADIN-AVNEHGNV 107
Query: 462 PLAVAIQSGDFQIVKELQNYGAQI 485
PL A G Q+ ++L GA +
Sbjct: 108 PLHYACFWGQDQVAEDLVANGALV 131
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 13/204 (6%)
Query: 92 TALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRA 151
+ ++ A + G + LI G VN +PLH AC G+ + VK LL A V
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 152 KCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDF-SPLHFAVVKKNLS 210
+ TP+ + S D +++L+++GA+V+ P +D SP+H A + ++
Sbjct: 121 VTADWHTPLFNACVSGSWD------CVNLLLQHGASVQ---PESDLASPIHEAARRGHVE 171
Query: 211 VVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHK 270
V LI + + + P L+ A E+ V+ L S DV+ G +S LH
Sbjct: 172 CVNSLIAYGGNIDHKISHLGTP-LYLACENQQRACVKKLLES-GADVNQGKGQ-DSPLHA 228
Query: 271 ACHVGNLQIVQMLVKRKFDINAQN 294
+ ++ +L+ D A+N
Sbjct: 229 VVRTASEELACLLMDFGADTQAKN 252
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 83 VNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFL 142
VN D + L+ A L G V +L+ HGA VN +TPL AC G+ + V L
Sbjct: 85 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 144
Query: 143 LSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHF 202
L A V+ + S + +PI + E ++ LI G N+ K+ +PL+
Sbjct: 145 LQHGASVQPE-SDLASPIHEAA------RRGHVECVNSLIAYGGNIDHKISHLG-TPLYL 196
Query: 203 AVVKKNLSVVELLIKCKADTN 223
A + + V+ L++ AD N
Sbjct: 197 ACENQQRACVKKLLESGADVN 217
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 85/211 (40%), Gaps = 22/211 (10%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
+P+ AA H S + LI +G VN+ S L AC ++
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHV-------------SPLHEACL-GGHLS 106
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNK--EAA 497
VK+LL HGA VN + PL A SG + V L +GA + E+ L + EAA
Sbjct: 107 CVKILLKHGAQVNGVTAD-WHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAA 165
Query: 498 RIAH----STTELEERXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDGACVNVSSERRGS 553
R H ++ + + VKK +E GA VN + + S
Sbjct: 166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDS 224
Query: 554 ALIYVAWKGYEEIVDLLLDNGADVNFKSATG 584
L V EE+ LL+D GAD K+A G
Sbjct: 225 PLHAVVRTASEELACLLMDFGADTQAKNAEG 255
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDV 257
SPLH A + +LS V++L+K A N + PL F A S S V L
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL-FNACVSGSWDCVNLLLQ---HGA 149
Query: 258 SI-SDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFA 304
S+ + DL S +H+A G+++ V L+ +I+ + + P++ A
Sbjct: 150 SVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLA 197
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 24/169 (14%)
Query: 250 LNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGR 309
L S+ + V+I D S LH+AC G+L V++L+K +N + P+F A G
Sbjct: 78 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG- 136
Query: 310 KHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQT--QIKRLDQI--IKRII 365
D + NLLL S++ ++ + R + + +I
Sbjct: 137 ----------SWDCV---------NLLLQHGASVQPESDLASPIHEAARRGHVECVNSLI 177
Query: 366 DRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFI 414
NI+ + + TPL A ++ K L++ GA+VN + Q + +
Sbjct: 178 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPL 226
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 60/157 (38%), Gaps = 26/157 (16%)
Query: 361 IKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA--R 418
+K ++ +N D TPL A L+Q GA+V + I +A R
Sbjct: 108 VKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARR 167
Query: 419 SSDFCFRSALQY-----------------ACKHKNNIEMVKLLLLHGADVNDTSNKPKQK 461
C S + Y AC+++ VK LL GADVN K +
Sbjct: 168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQR-ACVKKLLESGADVNQ--GKGQDS 224
Query: 462 PLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAAR 498
PL +++ ++ L ++GA + KN E R
Sbjct: 225 PLHAVVRTASEELACLLMDFGA----DTQAKNAEGKR 257
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
I G VN+ + S L G+ V +LL +GA VN +A T L AC S
Sbjct: 79 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW 138
Query: 598 DNIVRKLLHHGA 609
D V LL HGA
Sbjct: 139 D-CVNLLLQHGA 149
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
V L ++D+N+ G + L+ A +G +V +LI GA +N + TPLHLA
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 75
Query: 132 YLGNKNIVKFLLSKKADVRA 151
G+++IV+ LL KAD+ A
Sbjct: 76 SHGHRDIVQKLLQYKADINA 95
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ + ++N N + FSPLH+A + +VVE+LI A N++ + + P L A
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP-LHLA 74
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYF 297
IV+ L K D++ + N LH AC G Q+ + LV ++ N+Y
Sbjct: 75 ASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133
Query: 298 LPPM 301
P+
Sbjct: 134 EMPV 137
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 239 ESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFL 298
E N+V V +L++ D++ D S LH AC G +V+ML+ R IN NR
Sbjct: 10 EGNAVA-VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD 68
Query: 299 PPMFFAIGMGRKHTHVAEYLLQ 320
P+ A G H + + LLQ
Sbjct: 69 TPLHLAASHG--HRDIVQKLLQ 88
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 541 GACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNI 600
GA +NV + + L A G+ +IV LL AD+N + G LH AC F D +
Sbjct: 57 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC-FWGQDQV 115
Query: 601 VRKLLHHGAYYDMKDGKTGKTPLKHAEA 628
L+ +GA + + K G+ P+ A+A
Sbjct: 116 AEDLVANGALVSICN-KYGEMPVDKAKA 142
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
VE L+ G +N + T L++A G +V L+ + A++N +E G PLH AC
Sbjct: 50 VEMLIMRGAR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC 108
Query: 132 YLGNKNIVKFLLSKKA 147
+ G + + L++ A
Sbjct: 109 FWGQDQVAEDLVANGA 124
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 115 NVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDT 174
++N D+ G++PLH AC G +V+ L+ + A + TP+ +++ D
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRD---- 81
Query: 175 NEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPL 233
I+ L++ A++ + PLH+A V E L+ A ++ K + P+
Sbjct: 82 --IVQKLLQYKADINAVNEHGNV-PLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 137
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 352 TQIKRLDQIIKRI-IDRTENINAEGDDM-ITPLLFAAKHCDLQSAKYLIQKGANVNLTET 409
TQ + + + R+ +D TEN +GDD +PL +A + + LI +GA +N+
Sbjct: 6 TQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN- 64
Query: 410 QKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQS 469
R D + L A H + ++V+ LL + AD+N N+ PL A
Sbjct: 65 --------RGDD----TPLHLAASHGHR-DIVQKLLQYKADIN-AVNEHGNVPLHYACFW 110
Query: 470 GDFQIVKELQNYGAQI 485
G Q+ ++L GA +
Sbjct: 111 GQDQVAEDLVANGALV 126
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 61/142 (42%)
Query: 91 RTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVR 150
+T L++A++ ++ L+ G + RD +G TPLHLAC G V L
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 151 AKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLS 210
+ T + I+ +L+ GA+V + P + LH AV +N
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 211 VVELLIKCKADTNLIVKVNQEP 232
+V LL+KC AD N + P
Sbjct: 166 LVSLLLKCGADVNRVTYQGYSP 187
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 72 VEFLLSTGDHDVN-EKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHL 129
VE L+S G DVN ++ +GRTAL++A+ +V+LL+ GA+VN +GY+P L
Sbjct: 133 VELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 562 GYEEIVDLLLDNGADVNFKS-ATGFTALHMACRFHSNDNIVRKLLHHGA 609
GY IV+LL+ GADVN + G TALH+A N ++V LL GA
Sbjct: 128 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ-NPDLVSLLLKCGA 175
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 188 VREKMPFTDF------SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESN 241
V+ + F +F +PLH AV+ + E L+ D L PL A E
Sbjct: 31 VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL-HLACEQG 89
Query: 242 ---SVKIVEAFLNSKNFDVSISDGDLN--SLLHKACHVGNLQIVQMLVKRKFDINAQ 293
SV ++ + + + + N + LH A G L IV++LV D+NAQ
Sbjct: 90 CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 146
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 63 AVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEK 122
A+ + + EV+ ++ G+ DVN L+ GR L+ A G +++ L+ GA++N D+
Sbjct: 14 ALKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 123 GYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
TPL A Y G+ + VK LLSK AD K
Sbjct: 73 HITPLLSAVYEGHVSCVKLLLSKGADKTVK 102
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 110 IHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILA 162
+ G +VN E G PLH A G I++FLL K AD+ A +TP+L+
Sbjct: 27 VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLS 79
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 382 LLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMV 441
++A K+ DL K + KG +VN T R L YA +E++
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGG-------------RKPLHYAADC-GQLEIL 56
Query: 442 KLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGA 483
+ LLL GAD+N +K PL A+ G VK L + GA
Sbjct: 57 EFLLLKGADIN-APDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 526 VRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGF 585
+++ DEVK + G VN + E L Y A G EI++ LL GAD+N
Sbjct: 15 LKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHI 74
Query: 586 TALHMACRFHSNDNIVRKLLHHGAYYDMK--DGKTG 619
T L ++ + + + V+ LL GA +K DG T
Sbjct: 75 TPL-LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA 109
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQ 321
LH A G L+I++ L+ + DINA +++ + P+ A+ G H + LL +
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG--HVSCVKLLLSK 95
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 541 GACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNI 600
GA +N + + L+ ++G+ V LLL GAD K G TA F + DN
Sbjct: 63 GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA------FEATDNQ 116
Query: 601 VRKLL 605
K L
Sbjct: 117 AIKAL 121
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 20/137 (14%)
Query: 342 SLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKG 401
S+ D + M + LD++ K + + E++N + PL +AA L+ ++L+ KG
Sbjct: 5 SMCDKEFMWALKNGDLDEV-KDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 63
Query: 402 ANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQK 461
A++N + K I+ S+ + + ++ VKLLL GAD T P
Sbjct: 64 ADINAPD--KHHITPLLSAVY------------EGHVSCVKLLLSKGAD--KTVKGPDG- 106
Query: 462 PLAVAIQSGDFQIVKEL 478
A ++ D Q +K L
Sbjct: 107 --LTAFEATDNQAIKAL 121
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 25/179 (13%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKK--- 146
G+TAL++A + G V L GA V + G+T LHLAC + LL +
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
Query: 147 ----ADVRAKCSMMVTP-----ILAVSANMS----EDSTDTNEIISMLIENGANVREKMP 193
+D S TP AV + + E+ D + + + EN
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN--------- 155
Query: 194 FTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNS 252
+ +PLH AV+ K+ +V LL AD N L A+E+ + ++E L +
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKA 147
GRT L++A+ ++ LL+ GA+ R G TPL A N + + L + A
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 25/179 (13%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKK--- 146
G+TAL++A + G V L GA V + G+T LHLAC + LL +
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSH 104
Query: 147 ----ADVRAKCSMMVTP-----ILAVSANMS----EDSTDTNEIISMLIENGANVREKMP 193
+D S TP AV + + E+ D + + + EN
Sbjct: 105 PRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN--------- 155
Query: 194 FTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNS 252
+ +PLH AV+ K+ +V LL AD N L A+E+ + ++E L +
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEK-GYTPLHLACYLGNKNIVKFLLSKKA 147
DG T L++A++ +MV LL GA++N + G TPLHLA ++++ LL A
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 148 DVRAKCSMMVTPI 160
D A+ TP+
Sbjct: 217 DPTARMYGGRTPL 229
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 63 AVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEK 122
A+ + + EV+ ++ G+ DVN L+ GR L+ A G +++ L+ GA++N D+
Sbjct: 9 ALKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 123 GYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
TPL A Y G+ + VK LLSK AD K
Sbjct: 68 HITPLLSAVYEGHVSCVKLLLSKGADKTVK 97
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 110 IHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILA 162
+ G +VN E G PLH A G I++FLL K AD+ A +TP+L+
Sbjct: 22 VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLS 74
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 526 VRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGF 585
+++ DEVK + G VN + E L Y A G EI++ LL GAD+N
Sbjct: 10 LKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHI 69
Query: 586 TALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLK 624
T L ++ + + + V+ LL GA +K G G T L+
Sbjct: 70 TPL-LSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTALE 106
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQ 321
LH A G L+I++ L+ + DINA +++ + P+ A+ G H + LL +
Sbjct: 39 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG--HVSCVKLLLSK 90
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 20/134 (14%)
Query: 345 DPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANV 404
D + M + LD++ K + + E++N + PL +AA L+ ++L+ KGA++
Sbjct: 3 DKEFMWALKNGDLDEV-KDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61
Query: 405 NLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLA 464
N + K I+ S+ + + ++ VKLLL GAD T P
Sbjct: 62 NAPD--KHHITPLLSAVY------------EGHVSCVKLLLSKGAD--KTVKGPDG---L 102
Query: 465 VAIQSGDFQIVKEL 478
A+++ D Q +K L
Sbjct: 103 TALEATDNQAIKAL 116
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%)
Query: 94 LYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKC 153
L A G V +L+ +GA+VN +D+ GYTPLHLA G+ IV+ LL ADV A+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 154 SMMVTPILAVSANMSED 170
T N +ED
Sbjct: 66 KFGKTAFDISIDNGNED 82
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDR 119
L A + EV L++ G DVN K +DG T L++A +G ++V +L+ GA+VN +
Sbjct: 6 LLEAARAGQDDEVRILMANG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 120 DEKGYTPLHLACYLGNKNIVKFL 142
D+ G T ++ GN+++ + L
Sbjct: 65 DKFGKTAFDISIDNGNEDLAEIL 87
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADVN K G+T LH+A R + IV LL GA
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADV 61
Query: 612 DMKDGKTGKTPL 623
+ +D K GKT
Sbjct: 62 NAQD-KFGKTAF 72
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 25/97 (25%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ +L+ NGA+V K ++PLH A + +L +VE+L+K AD N K +
Sbjct: 18 VRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTA----- 71
Query: 238 IESNSVKIVEAFLNSKNFDVSISDG--DLNSLLHKAC 272
FD+SI +G DL +L KA
Sbjct: 72 -----------------FDISIDNGNEDLAEILQKAA 91
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 526 VRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGF 585
R+ + DEV+ + +GA VN + + L A +G+ EIV++LL GADVN + G
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 69
Query: 586 TALHMA 591
TA ++
Sbjct: 70 TAFDIS 75
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 249 FLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMG 308
L + DV+ D D + LH A G+L+IV++L+K D+NAQ+++ F I +
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF--GKTAFDISID 77
Query: 309 RKHTHVAEYL 318
+ +AE L
Sbjct: 78 NGNEDLAEIL 87
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 358 DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVN 405
D ++ ++ ++NA+ D TPL AA+ L+ + L++ GA+VN
Sbjct: 15 DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 42 FLQGIINSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQG 101
L +++S + T L +AV + + + LL ++N ++ DG T L +A
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 102 LYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPIL 161
+ MV LI A++N D G T LH A + N V LL A+ A+ TP+
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 162 AVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELL 215
+ S +++ L++N AN RE D P A + + +V LL
Sbjct: 190 LAAREGSYEAS------KALLDNFAN-REITDHMDRLPRDVASERLHHDIVRLL 236
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
QI+ R +R N+NA D TPL+ AA+ + LI A++N
Sbjct: 101 QILLR--NRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN------------- 145
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
++D ++AL +A NN E V +LL+H A+ D + + PL +A + G ++ K L
Sbjct: 146 AADNSGKTALHWAAA-VNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKAL 203
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 28/204 (13%)
Query: 123 GYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEI----- 177
G TPL +A G + D A+ ++ +LA A ++ T E
Sbjct: 2 GLTPLMIAAVRGGGLDTGEDIENNEDSTAQV---ISDLLAQGAELNATMDKTGETSLHLA 58
Query: 178 --------ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVN 229
L++ GA+ + T +PLH AV + V ++L++ +A TNL +++
Sbjct: 59 ARFARADAAKRLLDAGADANSQ-DNTGRTPLHAAVAADAMGVFQILLRNRA-TNLNARMH 116
Query: 230 Q--EPLLF---FAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLV 284
PL+ AIE +VE + + + D++ +D + LH A V N + V +L+
Sbjct: 117 DGTTPLILAARLAIEG----MVEDLI-TADADINAADNSGKTALHWAAAVNNTEAVNILL 171
Query: 285 KRKFDINAQNRYFLPPMFFAIGMG 308
+ +AQ+ P+F A G
Sbjct: 172 MHHANRDAQDDKDETPLFLAAREG 195
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 15/167 (8%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKA-D 148
G T+L++A L+ GA+ N +D G TPLH A + + LL +A +
Sbjct: 51 GETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATN 110
Query: 149 VRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFS---PLHFAVV 205
+ A+ TP++ ++A ++ I ++E+ + D S LH+A
Sbjct: 111 LNARMHDGTTPLI-LAARLA---------IEGMVEDLITADADINAADNSGKTALHWAAA 160
Query: 206 KKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNS 252
N V +L+ A+ + ++ P LF A S + +A L++
Sbjct: 161 VNNTEAVNILLMHHANRDAQDDKDETP-LFLAAREGSYEASKALLDN 206
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 553 SALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYD 612
+ LI A E +V+ L+ AD+N +G TALH A ++ + + L+HH A D
Sbjct: 120 TPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHH-ANRD 178
Query: 613 MKDGKTGKTPL 623
+D K +TPL
Sbjct: 179 AQDDKD-ETPL 188
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L A N + EFLL G +VN+ GR L+ A + G + L + GA++
Sbjct: 237 TPLIQATAANSLLACEFLLQNGA-NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFL 142
RD +G PL +A N +IV L
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLL 320
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%)
Query: 88 QDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKA 147
QD T L A L+ +GANVN D G PLH A LG+ + L + A
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 148 DVRAKCSMMVTPI 160
D+ A+ S P+
Sbjct: 293 DLGARDSEGRDPL 305
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 375 GDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
G D TPL+ A L + ++L+Q GANVN +D R L +A
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVN-------------QADSAGRGPLHHATI- 277
Query: 435 KNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIV--------KELQNYGAQID 486
+ + L L GAD+ ++ + PL +A+++ + IV +E + Q
Sbjct: 278 LGHTGLACLFLKRGADLGARDSE-GRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG 336
Query: 487 KENYL 491
E YL
Sbjct: 337 DETYL 341
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L A N + EFLL G +VN+ GR L+ A + G + L + GA++
Sbjct: 237 TPLIQATAANSLLACEFLLQNG-ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFL 142
RD +G PL +A N +IV L
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLL 320
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%)
Query: 88 QDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKA 147
QD T L A L+ +GANVN D G PLH A LG+ + L + A
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 148 DVRAKCSMMVTPI 160
D+ A+ S P+
Sbjct: 293 DLGARDSEGRDPL 305
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 375 GDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
G D TPL+ A L + ++L+Q GANVN +D R L +A
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVN-------------QADSAGRGPLHHA-TI 277
Query: 435 KNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIV--------KELQNYGAQID 486
+ + L L GAD+ ++ + PL +A+++ + IV +E + Q
Sbjct: 278 LGHTGLACLFLKRGADLGARDSE-GRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG 336
Query: 487 KENYL 491
E YL
Sbjct: 337 DETYL 341
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L A N + EFLL G +VN+ GR L+ A + G + L + GA++
Sbjct: 237 TPLIQATAANSLLACEFLLQNGA-NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFL 142
RD +G PL +A N +IV L
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLL 320
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%)
Query: 88 QDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKA 147
QD T L A L+ +GANVN D G PLH A LG+ + L + A
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 148 DVRAKCSMMVTPI 160
D+ A+ S P+
Sbjct: 293 DLGARDSEGRDPL 305
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 375 GDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
G D TPL+ A L + ++L+Q GANVN +D R L +A
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVN-------------QADSAGRGPLHHA-TI 277
Query: 435 KNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIV--------KELQNYGAQID 486
+ + L L GAD+ ++ + PL +A+++ + IV +E + Q
Sbjct: 278 LGHTGLACLFLKRGADLGARDSE-GRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG 336
Query: 487 KENYL 491
E YL
Sbjct: 337 DETYL 341
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 21/153 (13%)
Query: 332 RPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTEN-INAEGDDMITPLLFAAKHCD 390
R NL SL ++ +Q ++ L I++ EN IN ++ TPL++AA H
Sbjct: 10 RENLYFQGANSLSVHQLAAQGEMLYLATRIEQ-----ENVINHTDEEGFTPLMWAAAHGQ 64
Query: 391 LQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGAD 450
+ ++L+Q GA+ L + R SAL AC K ++VK+LL G D
Sbjct: 65 IAVVEFLLQNGADPQL-------LGKGR------ESALSLACS-KGYTDIVKMLLDCGVD 110
Query: 451 VNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGA 483
VN+ + PL A+ + VK L GA
Sbjct: 111 VNEY-DWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGR-TALYMAILQGLYKMVTLLIHHGAN 115
T L A +I VEFLL G + L GR +AL +A +G +V +L+ G +
Sbjct: 53 FTPLMWAAAHGQIAVVEFLLQNGADP--QLLGKGRESALSLACSKGYTDIVKMLLDCGVD 110
Query: 116 VNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
VN+ D G TPL A + + VK LL AD
Sbjct: 111 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 197 FSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFD 256
F+PL +A ++VVE L++ AD L+ K +E L A IV+ L+ D
Sbjct: 53 FTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-GRESALSLACSKGYTDIVKMLLDC-GVD 110
Query: 257 VSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRK 310
V+ D + + L A H +++ V+ML++ D + M A+ +G +
Sbjct: 111 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+++GA + + R SAL KGY +IV +LLD G DVN G T L A H N
Sbjct: 72 LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA--VHGN 129
Query: 598 D-NIVRKLLHHGA 609
V+ LL GA
Sbjct: 130 HVKCVKMLLESGA 142
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 83 VNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFL 142
+N ++G T L A G +V L+ +GA+ + + L LAC G +IVK L
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 143 LSKKADVRAKCSMMVTPIL-AVSANMSEDSTDTNEIISMLIENGAN 187
L DV TP+L AV N + + ML+E+GA+
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHV-------KCVKMLLESGAD 143
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
IE +N + E + L++ A G +V+ LL NGAD +AL +AC
Sbjct: 39 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 98
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAG 629
D IV+ LL G + D G TPL +A G
Sbjct: 99 D-IVKMLLDCGVDVNEYD-WNGGTPLLYAVHG 128
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
L+L CS + + ++ LL G DVNE +G T L A+ K V +L+ GA+
Sbjct: 89 LSLACSKGYTDIVK---MLLDCGV-DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 144
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLS 144
+ GY + LA LG +++ + + S
Sbjct: 145 TIETDSGYNSMDLAVALGYRSVQQVIES 172
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 17/171 (9%)
Query: 265 NSL-LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDS 323
NSL +H+ G + + ++++ IN + P+ +A G+ V E+LLQ +
Sbjct: 19 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQ--IAVVEFLLQNGA 76
Query: 324 INVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLL 383
P LL +S K I+K ++D ++N + TPLL
Sbjct: 77 --------DPQLL-----GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 123
Query: 384 FAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
+A ++ K L++ GA+ + ET + S + +RS Q H
Sbjct: 124 YAVHGNHVKCVKMLLESGADPTI-ETDSGYNSMDLAVALGYRSVQQVIESH 173
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 532 DEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
D VK ++ G VN G+ L+Y + + V +LL++GAD ++ +G+ ++ +A
Sbjct: 99 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 158
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 81 HDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVK 140
+D ++ ++G TAL+ AI Y +V LI GANVN D G+TPLH A + I
Sbjct: 45 NDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICM 104
Query: 141 FLLSKKADVRA 151
L+ A + A
Sbjct: 105 ALVQHGAAIFA 115
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 566 IVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIV-RKLLHHGAYY---DMKDGKTG 619
IVD L+ GA+VN + G+T LH C ND ++ L+ HGA + DG T
Sbjct: 69 IVDFLITAGANVNSPDSHGWTPLH--CAASCNDTVICMALVQHGAAIFATTLSDGATA 124
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 97 AILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMM 156
A L G ++V + + + +E+G T LH A N +IV FL++ A+V + S
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 157 VTPI-LAVSANMSEDSTDTNEIISM-LIENGANV 188
TP+ A S N + +I M L+++GA +
Sbjct: 88 WTPLHCAASCN--------DTVICMALVQHGAAI 113
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 182 IENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESN 241
+ G N+ K F+PL +A + V L++ AD +++ K +E L A
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK-ERESALSLASTGG 80
Query: 242 SVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPM 301
IV L ++ D++I D + + L A H +++ V+ L+ R D+ + PM
Sbjct: 81 YTDIV-GLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPM 139
Query: 302 FFAIGMG-RKHTHVAE 316
A+ +G RK V E
Sbjct: 140 DLAVALGYRKVQQVIE 155
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 46 IINSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKM 105
++N + + SA +I V FLL G D + ++ +AL +A G +
Sbjct: 28 LVNKPDERGFTPLIWASAF--GEIETVRFLLEWG-ADPHILAKERESALSLASTGGYTDI 84
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI-LAVS 164
V LL+ ++N D G TPL A + + V+ LL++ AD+ + TP+ LAV+
Sbjct: 85 VGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVA 144
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+E GA ++ ++ R SAL + GY +IV LLL+ D+N G T L A H N
Sbjct: 56 LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV--HGN 113
Query: 598 D-NIVRKLLHHGAYYDM-KDGKTGKTPLKHAEA-GKNRXXXXXXXXXXNLFASVTNPYDP 654
V LL GA D+ + +G TP+ A A G + LF S P DP
Sbjct: 114 HVKCVEALLARGA--DLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 116 VNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTN 175
VN DE+G+TPL A G V+FLL AD + A+S + TD
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERES---ALSLASTGGYTD-- 83
Query: 176 EIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKAD 221
I+ +L+E ++ + +PL +AV ++ VE L+ AD
Sbjct: 84 -IVGLLLERDVDIN-IYDWNGGTPLLYAVHGNHVKCVEALLARGAD 127
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 71/145 (48%), Gaps = 22/145 (15%)
Query: 357 LDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVN-LTETQKAFIS 415
LDQ+ + + +N + TPL++A+ ++++ ++L++ GA+ + L + +++ +S
Sbjct: 15 LDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALS 74
Query: 416 DARSS-------------------DFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSN 456
A + D+ + L YA H N+++ V+ LL GAD+ T
Sbjct: 75 LASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV-HGNHVKCVEALLARGADLT-TEA 132
Query: 457 KPKQKPLAVAIQSGDFQIVKELQNY 481
P+ +A+ G ++ + ++N+
Sbjct: 133 DSGYTPMDLAVALGYRKVQQVIENH 157
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 75 LLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLG 134
LL D D+N +G T L A+ K V L+ GA++ + GYTP+ LA LG
Sbjct: 87 LLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Query: 135 NKNIVKFL 142
+ + + +
Sbjct: 147 YRKVQQVI 154
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 76 LSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGN 135
L GD+ VN+ + G T L A G + V L+ GA+ + ++ + L LA G
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 136 KNIVKFLLSKKADVRAKCSMMVTPIL-AVSANMSEDSTDTNEIISMLIENGANVREKMPF 194
+IV LL + D+ TP+L AV N + + L+ GA++ +
Sbjct: 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHV-------KCVEALLARGADLTTEAD- 133
Query: 195 TDFSPLHFAV 204
+ ++P+ AV
Sbjct: 134 SGYTPMDLAV 143
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 48 NSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKL-QDGRTALYMAILQGLYKMV 106
N + + LT L + + I V L G+ +N K Q G+TAL +A+ G +V
Sbjct: 142 NRAGYSPIMLTALATLKTQDDIETVLQLFRLGN--INAKASQAGQTALMLAVSHGRVDVV 199
Query: 107 TLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSAN 166
L+ A+VN +D+ G T L AC G+K I LL+ + C + +T +A
Sbjct: 200 KALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS-----CDISLTDRDGSTAL 254
Query: 167 MSEDSTDTNEIISML 181
M +EI SML
Sbjct: 255 MVALDAGQSEIASML 269
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 4/172 (2%)
Query: 116 VNDRDEKGYTPLHLACYLGNKNIVKFLL-SKKADVRAKCSMMVTPILAVSANMSEDSTDT 174
VN D G T LH + N +V+ LL S V + +PI+ ++A + + D
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIM-LTALATLKTQDD 162
Query: 175 NEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLL 234
E + L G N+ K + L AV + VV+ L+ C+AD N + + L
Sbjct: 163 IETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN-VQDDDGSTAL 220
Query: 235 FFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKR 286
A E +I L + D+S++D D ++ L A G +I ML R
Sbjct: 221 MCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 254 NFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKF-DINAQNRY-FLPPMFFAIGMGRKH 311
++ V+I+D + N+ LH + N +VQ L+ ++ QNR + P M A+
Sbjct: 101 DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT---- 156
Query: 312 THVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENI 371
L QD I L + R + +M R+D ++K ++ ++
Sbjct: 157 ------LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVD-VVKALLACEADV 209
Query: 372 NAEGDDMITPLLFAAKHCDLQSAKYLIQ-KGANVNLTE 408
N + DD T L+ A +H + A L+ +++LT+
Sbjct: 210 NVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTD 247
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 544 VNVSSERRG-SALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVR 602
+N + + G +AL+ G ++V LL ADVN + G TAL AC H + I
Sbjct: 175 INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACE-HGHKEIAG 233
Query: 603 KLL 605
LL
Sbjct: 234 LLL 236
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 365 IDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCF 424
I++ IN ++ TPL++AA H + ++L+Q GA+ L + R
Sbjct: 21 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-------LGKGR------ 67
Query: 425 RSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGA 483
SAL AC K ++VK+LL G DVN+ + PL A+ + VK L GA
Sbjct: 68 ESALSLACS-KGYTDIVKMLLDCGVDVNEY-DWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGR-TALYMAILQGLYKMVTLLIHHGAN 115
T L A +I VEFLL G + L GR +AL +A +G +V +L+ G +
Sbjct: 35 FTPLMWAAAHGQIAVVEFLLQNGADP--QLLGKGRESALSLACSKGYTDIVKMLLDCGVD 92
Query: 116 VNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
VN+ D G TPL A + + VK LL AD
Sbjct: 93 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 197 FSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFD 256
F+PL +A ++VVE L++ AD L+ K +E L A IV+ L+ D
Sbjct: 35 FTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-GRESALSLACSKGYTDIVKMLLDC-GVD 92
Query: 257 VSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRK 310
V+ D + + L A H +++ V+ML++ D + M A+ +G +
Sbjct: 93 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+++GA + + R SAL KGY +IV +LLD G DVN G T L A H N
Sbjct: 54 LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA--VHGN 111
Query: 598 D-NIVRKLLHHGA 609
V+ LL GA
Sbjct: 112 HVKCVKMLLESGA 124
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 83 VNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFL 142
+N ++G T L A G +V L+ +GA+ + + L LAC G +IVK L
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 143 LSKKADVRAKCSMMVTPIL-AVSANMSEDSTDTNEIISMLIENGAN 187
L DV TP+L AV N + + ML+E+GA+
Sbjct: 87 LDCGVDVNEYDWNGGTPLLYAVHGNHV-------KCVKMLLESGAD 125
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
IE +N + E + L++ A G +V+ LL NGAD +AL +AC
Sbjct: 21 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 80
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAG 629
D IV+ LL G + D G TPL +A G
Sbjct: 81 D-IVKMLLDCGVDVNEYD-WNGGTPLLYAVHG 110
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
L+L CS + + ++ LL G DVNE +G T L A+ K V +L+ GA+
Sbjct: 71 LSLACSKGYTDIVK---MLLDCGV-DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 126
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLS 144
+ GY + LA LG +++ + + S
Sbjct: 127 TIETDSGYNSMDLAVALGYRSVQQVIES 154
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 17/171 (9%)
Query: 265 NSL-LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDS 323
NSL +H+ G + + ++++ IN + P+ +A G+ V E+LLQ +
Sbjct: 1 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQ--IAVVEFLLQNGA 58
Query: 324 INVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLL 383
P LL +S K I+K ++D ++N + TPLL
Sbjct: 59 --------DPQLL-----GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 105
Query: 384 FAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
+A ++ K L++ GA+ + ET + S + +RS Q H
Sbjct: 106 YAVHGNHVKCVKMLLESGADPTI-ETDSGYNSMDLAVALGYRSVQQVIESH 155
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 532 DEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
D VK ++ G VN G+ L+Y + + V +LL++GAD ++ +G+ ++ +A
Sbjct: 81 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 365 IDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCF 424
I++ IN ++ TPL++AA H + ++L+Q GA+ L + R
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-------LGKGR------ 69
Query: 425 RSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGA 483
SAL AC K ++VK+LL G DVN+ + PL A+ + VK L GA
Sbjct: 70 ESALSLACS-KGYTDIVKMLLDCGVDVNEY-DWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGR-TALYMAILQGLYKMVTLLIHHGAN 115
T L A +I VEFLL G + L GR +AL +A +G +V +L+ G +
Sbjct: 37 FTPLMWAAAHGQIAVVEFLLQNGADP--QLLGKGRESALSLACSKGYTDIVKMLLDCGVD 94
Query: 116 VNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
VN+ D G TPL A + + VK LL AD
Sbjct: 95 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 197 FSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFD 256
F+PL +A ++VVE L++ AD L+ K +E L A IV+ L+ D
Sbjct: 37 FTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-GRESALSLACSKGYTDIVKMLLDC-GVD 94
Query: 257 VSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRK 310
V+ D + + L A H +++ V+ML++ D + M A+ +G +
Sbjct: 95 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+++GA + + R SAL KGY +IV +LLD G DVN G T L A H N
Sbjct: 56 LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA--VHGN 113
Query: 598 D-NIVRKLLHHGA 609
V+ LL GA
Sbjct: 114 HVKCVKMLLESGA 126
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 83 VNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFL 142
+N ++G T L A G +V L+ +GA+ + + L LAC G +IVK L
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 143 LSKKADVRAKCSMMVTPIL-AVSANMSEDSTDTNEIISMLIENGAN 187
L DV TP+L AV N + + ML+E+GA+
Sbjct: 89 LDCGVDVNEYDWNGGTPLLYAVHGNHV-------KCVKMLLESGAD 127
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
IE +N + E + L++ A G +V+ LL NGAD +AL +AC
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAG 629
D IV+ LL G + D G TPL +A G
Sbjct: 83 D-IVKMLLDCGVDVNEYD-WNGGTPLLYAVHG 112
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
L+L CS + + ++ LL G DVNE +G T L A+ K V +L+ GA+
Sbjct: 73 LSLACSKGYTDIVK---MLLDCGV-DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP 128
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLS 144
+ GY + LA LG +++ + + S
Sbjct: 129 TIETDSGYNSMDLAVALGYRSVQQVIES 156
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 17/171 (9%)
Query: 265 NSL-LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDS 323
NSL +H+ G + + ++++ IN + P+ +A G+ V E+LLQ +
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQ--IAVVEFLLQNGA 60
Query: 324 INVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLL 383
P LL +S K I+K ++D ++N + TPLL
Sbjct: 61 --------DPQLL-----GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 107
Query: 384 FAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
+A ++ K L++ GA+ + ET + S + +RS Q H
Sbjct: 108 YAVHGNHVKCVKMLLESGADPTI-ETDSGYNSMDLAVALGYRSVQQVIESH 157
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 532 DEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
D VK ++ G VN G+ L+Y + + V +LL++GAD ++ +G+ ++ +A
Sbjct: 83 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 94 LYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
L A G V +L+ +GA+V +D+ G TPLHLA G+ +VK LL ADV A+
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDR 119
L A + EV L++ G DV K ++G T L++A G ++V LL+ GA+VN +
Sbjct: 10 LLEAARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 120 DEKGYTPLHLACYLGNKNIVKFL 142
D+ G T ++ GN+++ + L
Sbjct: 69 DKFGKTAFDISIDNGNEDLAEIL 91
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADV K G T LH+A R + + +V+ LL GA
Sbjct: 7 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAAR-NGHLEVVKLLLEAGADV 65
Query: 612 DMKDGKTGKTPL 623
+ +D K GKT
Sbjct: 66 NAQD-KFGKTAF 76
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 526 VRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWK-GYEEIVDLLLDNGADVNFKSATG 584
R+ + DEV+ + +GA V + ++ GS +++A + G+ E+V LLL+ GADVN + G
Sbjct: 14 ARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 585 FTALHMA 591
TA ++
Sbjct: 73 KTAFDIS 79
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 249 FLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMG 308
L + DV+ D + ++ LH A G+L++V++L++ D+NAQ+++ F I +
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKF--GKTAFDISID 81
Query: 309 RKHTHVAEYL 318
+ +AE L
Sbjct: 82 NGNEDLAEIL 91
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
+ +L+ NGA+V K +PLH A +L VV+LL++ AD N
Sbjct: 22 VRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 21/153 (13%)
Query: 82 DVNEKLQDGRTALYM-AILQGLYKMVT--LLIHHGANVN-------DRDE-KGYTPLHLA 130
D+ E ++G TAL + A +G ++ + LL+ GA V+ D ++ KG T LH A
Sbjct: 227 DIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286
Query: 131 CYLGNKNIVKFLLSKKADVRAKCSM-MVTPI-LAVSANMSEDSTDTNEIISMLIENGANV 188
+ N IVK+L+ +K + K TPI LA E++ LI+ GA+V
Sbjct: 287 AQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRI-------EVVXYLIQQGASV 339
Query: 189 REKMPFTDFSPLHFAVVKKNLSVVELLIKCKAD 221
E + TD + A + ++V++ +C+ +
Sbjct: 340 -EAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 391 LQSAKYLIQKGANVNLTETQKAFISDAR--SSDFCFRSALQYACKHKNNIEMVKLLLLHG 448
+ SAK L++KGA V+ + AR S + R+AL YA + +N +VK L+
Sbjct: 251 VASAKLLVEKGAKVD-------YDGAARKDSEKYKGRTALHYAAQ-VSNXPIVKYLVGEK 302
Query: 449 ADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQID 486
D ++ + P+ +A Q G ++V L GA ++
Sbjct: 303 GSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVE 340
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
V++L+ + +++ +DG+T + +A +G ++V LI GA+V D +T LA
Sbjct: 295 VKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQ 354
Query: 132 YLGNKNIVKFL 142
+ NIV
Sbjct: 355 ANNHHNIVDIF 365
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 24/183 (13%)
Query: 48 NSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVT 107
NSS+ KS +L + E + ++ G DVN D T L +A+L ++V
Sbjct: 135 NSSAEKSEDLI----------VHEAKECIAAG-ADVNAXDCDENTPLXLAVLARRRRLVA 183
Query: 108 LLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSK---KADVRAKCSMMVTPILAVS 164
L GA+ ++ + LH A + + L+ K D+ T + V+
Sbjct: 184 YLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVA 243
Query: 165 ANMSEDSTDTNEIISMLIENGANV-------REKMPFTDFSPLHFAVVKKNLSVVELLIK 217
N D + +L+E GA V ++ + + LH+A N +V+ L+
Sbjct: 244 HNEGRDQVAS---AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVG 300
Query: 218 CKA 220
K
Sbjct: 301 EKG 303
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 360 IIKRII-DRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANV 404
I+K ++ ++ N + + +D TP+ AA+ ++ YLIQ+GA+V
Sbjct: 294 IVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASV 339
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
V +L+ +GA+V +D+ G TPLHLA G+ +VK LL ADV A+
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G L+ A G ++ V +L+ NGADV K G T LH+A R + + +V+ LL GA
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAAR-NGHLEVVKLLLEAGADV 83
Query: 612 DMKDGKTGKT 621
+D K GKT
Sbjct: 84 XAQD-KFGKT 92
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 71 EVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
EV L++ G DV K ++G T L++A G ++V LL+ GA+V +D+ G T ++
Sbjct: 39 EVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97
Query: 131 CYLGNKNIVKFL 142
GN+++ + L
Sbjct: 98 IDNGNEDLAEIL 109
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + DEV+ + +GA V + + L A G+ E+V LLL+ GADV + G T
Sbjct: 33 RAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKT 92
Query: 587 ALHMA 591
A ++
Sbjct: 93 AFDIS 97
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 256 DVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
DV+ D + ++ LH A G+L++V++L++ D+ AQ+++
Sbjct: 49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF 89
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKAD 221
+ +L+ NGA+V K +PLH A +L VV+LL++ AD
Sbjct: 40 VRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLLEAGAD 82
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADV 149
G + ++ A G + +L+ HGA+VN D G P+HLA G+ ++V F L+ ++D+
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSF-LAPESDL 134
Query: 150 RAKCSMMVTPI 160
+ + +TP+
Sbjct: 135 HHRDASGLTPL 145
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 13/94 (13%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
++ GA NV S + A G+ + + +L+++GADVN +TG +H+A R +
Sbjct: 63 LKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIR-EGH 121
Query: 598 DNIVRKL-----LHHGAYYDMKDGKTGKTPLKHA 626
++V L LHH +D +G TPL+ A
Sbjct: 122 SSVVSFLAPESDLHH------RDA-SGLTPLELA 148
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADV 149
G+TAL + + G + L+ GA+ N +D G +P+H A G + +K L+ ADV
Sbjct: 44 GKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV 102
Query: 150 RAKCSMMVTPI 160
A S PI
Sbjct: 103 NALDSTGSLPI 113
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 258 SISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEY 317
++ D S +H A G L +++LV+ D+NA + P+ AI G H+ V +
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG--HSSVVSF 127
Query: 318 LLQQDSIN 325
L + ++
Sbjct: 128 LAPESDLH 135
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
L A K V+ L + V D + N+ L+ A H +++I + L+ R DIN Q
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68
Query: 294 NRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
N P +A GR T + Y+L+ + ++N
Sbjct: 69 NSISDSPYLYAGAQGR--TEILAYMLKHATPDLN 100
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 38/156 (24%)
Query: 462 PLAVAIQSGDFQIVKELQNYGAQIDKEN------YLKNKEAAR-------IAHSTTELEE 508
PL +A+ + D +I K L + GA I+ +N YL R + H+T +L +
Sbjct: 42 PLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK 101
Query: 509 RXXXXXXXXXXXXXXXXVRSNKYDEVKKNIEDG-------------ACVNVSSERRGSAL 555
+ D VK +EDG A + R G+ L
Sbjct: 102 HNRYGGNALIPAAEKGHI-----DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156
Query: 556 IYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
Y++IV LL++NGAD + K +G TA+ A
Sbjct: 157 -------YQDIVKLLMENGADQSIKDNSGRTAMDYA 185
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 42/169 (24%)
Query: 347 KVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNL 406
+ +Q K++ +I++ + + ++ EG+ TPL A + D++ AK LI +GA++NL
Sbjct: 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGN---TPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 407 TETQKAFISDARSSDFCFRSA------LQYACKH---------------------KNNIE 439
+ ISD S + + A L Y KH K +I+
Sbjct: 68 QNS----ISD---SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120
Query: 440 MVKLLLLHGADVNDTSNKPKQKPL--AVAIQSGD--FQ-IVKELQNYGA 483
VKLLL G + D N L AV ++ G+ +Q IVK L GA
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDV 257
+PL+ AV ++ + + LI AD NL ++ P L+ + + +I+ L D+
Sbjct: 41 TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRT-EILAYMLKHATPDL 99
Query: 258 SISDGDLNSLLHKACHVGNLQIVQMLVKR-KFDINAQNRYFLPPMFFAIGM 307
+ + + L A G++ V++L++ + DI+ QN + + A+G+
Sbjct: 100 NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL 150
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 116 VNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSA 165
V++ D +G TPL++A + + I K L+ + AD+ + S+ +P L A
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA 81
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%)
Query: 53 KSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHH 112
K+ E+ L A ++V+ +L + V+E +G T L +A+ ++ LI
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 113 GANVNDRDEKGYTPLHLACYLGNKNIVKFLL 143
GA++N ++ +P A G I+ ++L
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYML 92
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADV 149
G + ++ A G + +L+ HGA+VN D G P+HLA G+ ++V F L+ ++D+
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSF-LAPESDL 132
Query: 150 RAKCSMMVTPI 160
+ + +TP+
Sbjct: 133 HHRDASGLTPL 143
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 13/94 (13%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
++ GA NV S + A G+ + + +L+++GADVN +TG +H+A R +
Sbjct: 61 LKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIR-EGH 119
Query: 598 DNIVRKL-----LHHGAYYDMKDGKTGKTPLKHA 626
++V L LHH +D +G TPL+ A
Sbjct: 120 SSVVSFLAPESDLHH------RDA-SGLTPLELA 146
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADV 149
G+TAL + + G + L+ GA+ N +D G +P+H A G + +K L+ ADV
Sbjct: 42 GKTALQVMMF-GSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV 100
Query: 150 RAKCSMMVTPI 160
A S PI
Sbjct: 101 NALDSTGSLPI 111
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 258 SISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEY 317
++ D S +H A G L +++LV+ D+NA + P+ AI G H+ V +
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG--HSSVVSF 125
Query: 318 LLQQDSIN 325
L + ++
Sbjct: 126 LAPESDLH 133
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADV 149
G + ++ A G + +L+ HGA+VN D G P+HLA G+ +V F L+ ++D+
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF-LAAESDL 132
Query: 150 RAKCSMMVTPILAVSANMSEDSTD 173
+ + +TP+ ++D D
Sbjct: 133 HRRDARGLTPLELALQRGAQDLVD 156
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADV 149
G+TAL + + G + L+ GA+ N +D G +P+H A G + +K L+ ADV
Sbjct: 42 GKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 100
Query: 150 RAKCSMMVTPI-LAV 163
PI LAV
Sbjct: 101 NVPDGTGALPIHLAV 115
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 593
++ GA NV S + A G+ + + +L+++GADVN TG +H+A +
Sbjct: 61 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ 116
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 350 SQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTET 409
++ ++ + +++ R + + +N G + ++F + L+ L+++GA+ N+ +T
Sbjct: 17 ARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALE----LLKQGASPNVQDT 72
Query: 410 Q-KAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQ 468
+ + DA + F ++ +K+L+ HGADVN + P+ +A+Q
Sbjct: 73 SGTSPVHDAARTGF---------------LDTLKVLVEHGADVN-VPDGTGALPIHLAVQ 116
Query: 469 SGDFQIVKEL 478
G +V L
Sbjct: 117 EGHTAVVSFL 126
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADV 149
G + ++ A G + +L+ HGA+VN D G P+HLA G+ +V F L+ ++D+
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF-LAAESDL 126
Query: 150 RAKCSMMVTPILAVSANMSEDSTD 173
+ + +TP+ ++D D
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVD 150
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADV 149
G+TAL + + G + L+ GA+ N +D G +P+H A G + +K L+ ADV
Sbjct: 36 GKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94
Query: 150 RAKCSMMVTPI-LAV 163
PI LAV
Sbjct: 95 NVPDGTGALPIHLAV 109
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 593
++ GA NV S + A G+ + + +L+++GADVN TG +H+A +
Sbjct: 55 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ 110
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 350 SQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTET 409
++ ++ + +++ R + + +N G + ++F + L+ L+++GA+ N+ +T
Sbjct: 11 ARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALE----LLKQGASPNVQDT 66
Query: 410 Q-KAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQ 468
+ + DA + F ++ +K+L+ HGADVN + P+ +A+Q
Sbjct: 67 SGTSPVHDAARTGF---------------LDTLKVLVEHGADVN-VPDGTGALPIHLAVQ 110
Query: 469 SGDFQIVKEL 478
G +V L
Sbjct: 111 EGHTAVVSFL 120
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+E GA ++ ++ R SAL + GY +IV LLL+ D+N G T L A R ++
Sbjct: 56 LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVR-GNH 114
Query: 598 DNIVRKLLHHGAYYDM-KDGKTGKTPLKHAEA-GKNRXXXXXXXXXXNLFASVTNPYDP 654
V LL GA D+ + +G TP+ A A G + LF S P DP
Sbjct: 115 VKCVEALLARGA--DLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 116 VNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTN 175
VN DE+G+TPL A G V+FLL AD + A+S + TD
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERES---ALSLASTGGYTD-- 83
Query: 176 EIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKAD 221
I+ +L+E ++ + +PL +AV ++ VE L+ AD
Sbjct: 84 -IVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGAD 127
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 46 IINSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKM 105
++N + + SA +I V FLL G D + ++ +AL +A G +
Sbjct: 28 LVNKPDERGFTPLIWASAF--GEIETVRFLLEWG-ADPHILAKERESALSLASTGGYTDI 84
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI-LAVS 164
V LL+ ++N D G TPL A + V+ LL++ AD+ + TP+ LAV+
Sbjct: 85 VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVA 144
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 75 LLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLG 134
LL D D+N +G T L A+ K V L+ GA++ + GYTP+ LA LG
Sbjct: 87 LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146
Query: 135 NKNIVKFL 142
+ + + +
Sbjct: 147 YRKVQQVI 154
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 71/145 (48%), Gaps = 22/145 (15%)
Query: 357 LDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVN-LTETQKAFIS 415
LDQ+ + + +N + TPL++A+ ++++ ++L++ GA+ + L + +++ +S
Sbjct: 15 LDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALS 74
Query: 416 DARSS-------------------DFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSN 456
A + D+ + L YA + N+++ V+ LL GAD+ T
Sbjct: 75 LASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVR-GNHVKCVEALLARGADLT-TEA 132
Query: 457 KPKQKPLAVAIQSGDFQIVKELQNY 481
P+ +A+ G ++ + ++N+
Sbjct: 133 DSGYTPMDLAVALGYRKVQQVIENH 157
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 76 LSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGN 135
L GD+ VN+ + G T L A G + V L+ GA+ + ++ + L LA G
Sbjct: 22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81
Query: 136 KNIVKFLLSKKADVRAKCSMMVTPIL-AVSANMSEDSTDTNEIISMLIENGANVREKMPF 194
+IV LL + D+ TP+L AV N + + L+ GA++ +
Sbjct: 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHV-------KCVEALLARGADLTTEAD- 133
Query: 195 TDFSPLHFAV 204
+ ++P+ AV
Sbjct: 134 SGYTPMDLAV 143
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 25/184 (13%)
Query: 56 ELTLLCSAVWDNKIREVEFLLSTGDHDVNE----KLQDGRTALYMAILQGLYKMVTLLIH 111
E L +A++DN + L+ V E +L +G+TAL++A++ +V L+
Sbjct: 38 ETALHIAALYDN-LEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 112 HGANVNDRDEK-------------GYTPLHLACYLGNKNIVKFLLSKKADVRAKCSM--M 156
GA+V+ R G PL A +G++ IV+ L+ AD+RA+ S+
Sbjct: 97 RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT 156
Query: 157 VTPILAVSANMSEDSTDTNEIISMLIENGANVR--EKMPFTD-FSPLHFAVVKKNLSVVE 213
V IL + N + N ++S + G +++ E +P +P A V+ N+ + +
Sbjct: 157 VLHILILQPNKTFACQMYNLLLSY--DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ 214
Query: 214 LLIK 217
L++
Sbjct: 215 HLMQ 218
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 25/167 (14%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV--- 116
L A +N ++ + LL +V+++ G TAL++A L + +L+ +
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66
Query: 117 --NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVT-------------PIL 161
+G T LH+A N N+V+ LL++ A V A+ + V P+
Sbjct: 67 PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126
Query: 162 AVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKN 208
+ SE EI+ +LIE+GA++R + + + LH +++ N
Sbjct: 127 FAACVGSE------EIVRLLIEHGADIRAQDSLGN-TVLHILILQPN 166
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 555 LIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHM 590
L + A G EEIV LL+++GAD+ + + G T LH+
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 98/250 (39%), Gaps = 65/250 (26%)
Query: 82 DVNEKLQDGRTALYMAILQG-------------LYKMVTLLIHHGANV-NDRDEKGYTPL 127
DVN + DG T L +A G +++ I+ GA++ N D G T L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 128 HLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGAN 187
HLA + K LL AD AN
Sbjct: 62 HLAAAYSRSDAAKRLLEASAD-------------------------------------AN 84
Query: 188 VREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQ--EPLLF---FAIESNS 242
+++ M T PLH AV V ++LI+ +A T+L +++ PL+ A+E
Sbjct: 85 IQDNMGRT---PLHAAVSADAQGVFQILIRNRA-TDLDARMHDGTTPLILAARLAVEG-- 138
Query: 243 VKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMF 302
++E +NS + DV+ D S LH A V N+ +L+K + + QN P+F
Sbjct: 139 --MLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 303 FAIGMGRKHT 312
A G T
Sbjct: 196 LAAREGSYET 205
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 19/174 (10%)
Query: 84 NEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLL 143
N+ + G TAL++A L+ A+ N +D G TPLH A + + + L+
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 144 SKKA-DVRAKCSMMVTPI-----LAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDF 197
+A D+ A+ TP+ LAV M ED +++ ++ + + G
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEG-MLEDLINSHADVNAVDDLGK----------- 158
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLN 251
S LH+A N+ +L+K A+ ++ + P LF A S + + L+
Sbjct: 159 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP-LFLAAREGSYETAKVLLD 211
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 7/183 (3%)
Query: 33 FSEEDAFGYFLQGIINSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRT 92
+S DA L+ +++ ++ T L +AV + + L+ D++ ++ DG T
Sbjct: 67 YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 126
Query: 93 ALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
L +A + M+ LI+ A+VN D+ G + LH A + N + LL A+ +
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 186
Query: 153 CSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVV 212
+ TP+ + E S +T ++ L+++ AN R+ D P A + + +V
Sbjct: 187 NNREETPLFLAA---REGSYETAKV---LLDHFAN-RDITDHMDRLPRDIAQERMHHDIV 239
Query: 213 ELL 215
LL
Sbjct: 240 RLL 242
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
QI+ R +R +++A D TPL+ AA+ + LI A+VN
Sbjct: 107 QILIR--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN------------- 151
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+ D +SAL +A NN++ +LL +GA+ D N ++ PL +A + G ++ K L
Sbjct: 152 AVDDLGKSALHWAAA-VNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVL 209
Query: 479 QNYGAQIDKENYL 491
++ A D +++
Sbjct: 210 LDHFANRDITDHM 222
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 578 NFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
N TG TALH+A + +D ++LL A +++D G+TPL A
Sbjct: 51 NQTDRTGATALHLAAAYSRSD-AAKRLLEASADANIQD-NMGRTPLHAA 97
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 98/250 (39%), Gaps = 65/250 (26%)
Query: 82 DVNEKLQDGRTALYMAILQG-------------LYKMVTLLIHHGANV-NDRDEKGYTPL 127
DVN + DG T L +A G +++ I+ GA++ N D G T L
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 128 HLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGAN 187
HLA + K LL AD AN
Sbjct: 62 HLAARYSRSDAAKRLLEASAD-------------------------------------AN 84
Query: 188 VREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQ--EPLLF---FAIESNS 242
+++ M T PLH AV V ++LI+ +A T+L +++ PL+ A+E
Sbjct: 85 IQDNMGRT---PLHAAVSADAQGVFQILIRNRA-TDLDARMHDGTTPLILAARLAVEG-- 138
Query: 243 VKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMF 302
++E +NS + DV+ D S LH A V N+ +L+K + + QN P+F
Sbjct: 139 --MLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 303 FAIGMGRKHT 312
A G T
Sbjct: 196 LAAREGSYET 205
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 19/174 (10%)
Query: 84 NEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLL 143
N+ + G TAL++A L+ A+ N +D G TPLH A + + + L+
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 144 SKKA-DVRAKCSMMVTPI-----LAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDF 197
+A D+ A+ TP+ LAV M ED +++ ++ + + G
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEG-MLEDLINSHADVNAVDDLGK----------- 158
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLN 251
S LH+A N+ +L+K A+ ++ + P LF A S + + L+
Sbjct: 159 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP-LFLAAREGSYETAKVLLD 211
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 7/183 (3%)
Query: 33 FSEEDAFGYFLQGIINSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRT 92
+S DA L+ +++ ++ T L +AV + + L+ D++ ++ DG T
Sbjct: 67 YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 126
Query: 93 ALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
L +A + M+ LI+ A+VN D+ G + LH A + N + LL A+ +
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 186
Query: 153 CSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVV 212
+ TP+ + E S +T ++ L+++ AN R+ D P A + + +V
Sbjct: 187 NNREETPLFLAA---REGSYETAKV---LLDHFAN-RDITDHMDRLPRDIAQERMHHDIV 239
Query: 213 ELL 215
LL
Sbjct: 240 RLL 242
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 578 NFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
N TG TALH+A R+ +D ++LL A +++D G+TPL A
Sbjct: 51 NQTDRTGETALHLAARYSRSD-AAKRLLEASADANIQD-NMGRTPLHAA 97
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
QI+ R +R +++A D TPL+ AA+ + LI A+VN
Sbjct: 107 QILIR--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN------------- 151
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+ D +SAL +A NN++ +LL +GA+ D N ++ PL +A + G ++ K L
Sbjct: 152 AVDDLGKSALHWAAA-VNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVL 209
Query: 479 QNYGAQIDKENYL 491
++ A D +++
Sbjct: 210 LDHFANRDITDHM 222
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 80 DHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEK-GYTPLHLACYLGNKNI 138
D DV+ ++GRTAL G K V LL GA+++ RD + G T LH+A +
Sbjct: 67 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 126
Query: 139 VKFLLSKKADVRAKCSMMVTPI 160
V+ L+ AD+ + +T +
Sbjct: 127 VEALVELGADIEVEDERGLTAL 148
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 544 VNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSA-TGFTALHMACRFHSNDNIVR 602
V+ E +AL++VA G ++ V LL + GAD++ + G TALHMA + +V
Sbjct: 70 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY-VRPEVVE 128
Query: 603 KLLHHGAYYDMKDGKTGKTPLKHA 626
L+ GA +++D + G T L+ A
Sbjct: 129 ALVELGADIEVED-ERGLTALELA 151
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 75 LLSTGDHDVNEK-LQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
LL+ D++ + ++ G TAL+MA ++V L+ GA++ DE+G T L LA
Sbjct: 95 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 98/250 (39%), Gaps = 65/250 (26%)
Query: 82 DVNEKLQDGRTALYMAILQG-------------LYKMVTLLIHHGANV-NDRDEKGYTPL 127
DVN + DG T L +A G +++ I+ GA++ N D G T L
Sbjct: 3 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 62
Query: 128 HLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGAN 187
HLA + K LL AD AN
Sbjct: 63 HLAARYSRSDAAKRLLEASAD-------------------------------------AN 85
Query: 188 VREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQ--EPLLF---FAIESNS 242
+++ M T PLH AV V ++LI+ +A T+L +++ PL+ A+E
Sbjct: 86 IQDNMGRT---PLHAAVSADAQGVFQILIRNRA-TDLDARMHDGTTPLILAARLAVEG-- 139
Query: 243 VKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMF 302
++E +NS + DV+ D S LH A V N+ +L+K + + QN P+F
Sbjct: 140 --MLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 196
Query: 303 FAIGMGRKHT 312
A G T
Sbjct: 197 LAAREGSYET 206
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 19/174 (10%)
Query: 84 NEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLL 143
N+ + G TAL++A L+ A+ N +D G TPLH A + + + L+
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 111
Query: 144 SKKA-DVRAKCSMMVTPI-----LAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDF 197
+A D+ A+ TP+ LAV M ED +++ ++ + + G
Sbjct: 112 RNRATDLDARMHDGTTPLILAARLAVEG-MLEDLINSHADVNAVDDLGK----------- 159
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLN 251
S LH+A N+ +L+K A+ ++ + P LF A S + + L+
Sbjct: 160 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP-LFLAAREGSYETAKVLLD 212
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 7/183 (3%)
Query: 33 FSEEDAFGYFLQGIINSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRT 92
+S DA L+ +++ ++ T L +AV + + L+ D++ ++ DG T
Sbjct: 68 YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 127
Query: 93 ALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
L +A + M+ LI+ A+VN D+ G + LH A + N + LL A+ +
Sbjct: 128 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 187
Query: 153 CSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVV 212
+ TP+ + E S +T ++ L+++ AN R+ D P A + + +V
Sbjct: 188 NNREETPLFLAA---REGSYETAKV---LLDHFAN-RDITDHMDRLPRDIAQERMHHDIV 240
Query: 213 ELL 215
LL
Sbjct: 241 RLL 243
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 578 NFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
N TG TALH+A R+ +D ++LL A +++D G+TPL A
Sbjct: 52 NQTDRTGETALHLAARYSRSD-AAKRLLEASADANIQD-NMGRTPLHAA 98
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
QI+ R +R +++A D TPL+ AA+ + LI A+VN
Sbjct: 108 QILIR--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN------------- 152
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+ D +SAL +A NN++ +LL +GA+ D N ++ PL +A + G ++ K L
Sbjct: 153 AVDDLGKSALHWAAA-VNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVL 210
Query: 479 QNYGAQIDKENYL 491
++ A D +++
Sbjct: 211 LDHFANRDITDHM 223
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 105 MVTLLIHHGANV-NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAV 163
+++ I+ GA++ N D G T LHLA + K LL AD + +M TP+ A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 164 SANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
S D + +LI N A + +PL A ++E LI AD N
Sbjct: 66 V------SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119
Query: 224 LIVKVNQEPL 233
+ + + L
Sbjct: 120 AVDDLGKSAL 129
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 84 NEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLL 143
N+ + G TAL++A L+ A+ N +D G TPLH A + + + L+
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 144 SKKA-DVRAKCSMMVTPILAVS----ANMSEDSTDTNEIISMLIENGANVREKMPFTDFS 198
+A D+ A+ TP++ + M ED +++ ++ + + G S
Sbjct: 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK-----------S 127
Query: 199 PLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLN 251
LH+A N+ +L+K A+ ++ + P LF A S + + L+
Sbjct: 128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP-LFLAAREGSYETAKVLLD 179
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 7/183 (3%)
Query: 33 FSEEDAFGYFLQGIINSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRT 92
+S DA L+ +++ ++ T L +AV + + L+ D++ ++ DG T
Sbjct: 35 YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 94
Query: 93 ALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
L +A + M+ LI+ A+VN D+ G + LH A + N + LL A+ +
Sbjct: 95 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 154
Query: 153 CSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVV 212
+ TP+ + E S +T ++ L+++ AN R+ D P A + + +V
Sbjct: 155 NNREETPLFLAA---REGSYETAKV---LLDHFAN-RDITDHMDRLPRDIAQERMHHDIV 207
Query: 213 ELL 215
LL
Sbjct: 208 RLL 210
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 566 IVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKH 625
I D + + N TG TALH+A R+ +D ++LL A +++D G+TPL
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSD-AAKRLLEASADANIQD-NMGRTPLHA 64
Query: 626 A 626
A
Sbjct: 65 A 65
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
QI+ R +R +++A D TPL+ AA+ + LI A+VN
Sbjct: 75 QILIR--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN------------- 119
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+ D +SAL +A NN++ +LL +GA+ D N ++ PL +A + G ++ K L
Sbjct: 120 AVDDLGKSALHWA-AAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVL 177
Query: 479 QNYGAQIDKENYL 491
++ A D +++
Sbjct: 178 LDHFANRDITDHM 190
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 173 DTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEP 232
D +IS I GA++ + T + LH A + L++ AD N+ + + P
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61
Query: 233 LLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINA 292
L A+ +++ + + + ++ D+ D + L A + +++ L+ D+NA
Sbjct: 62 -LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 80 DHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEK-GYTPLHLACYLGNKNI 138
D DV+ ++GRTAL G K V LL GA+++ RD + G T LH+A +
Sbjct: 66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 125
Query: 139 VKFLLSKKADVRAK 152
V+ L+ AD+ +
Sbjct: 126 VEALVELGADIEVE 139
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 544 VNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSAT-GFTALHMACRFHSNDNIVR 602
V+ E +AL++VA G ++ V LL + GAD++ + G TALHMA + +V
Sbjct: 69 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY-VRPEVVE 127
Query: 603 KLLHHGAYYDMKDGKTGKTPLKHA 626
L+ GA +++D + G T L+ A
Sbjct: 128 ALVELGADIEVEDER-GLTALELA 150
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 75 LLSTGDHDVNEK-LQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
LL+ D++ + ++ G TAL+MA ++V L+ GA++ DE+G T L LA
Sbjct: 94 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 30/165 (18%)
Query: 83 VNEKLQD----GRTALYMAILQGLYKMVTLLIHHGANVN---------DRDEKGY----- 124
+N +D G+TAL++AI + V LL+ GA+V+ +DE GY
Sbjct: 80 INSPFRDIYYRGQTALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGE 139
Query: 125 TPLHLACYLGNKNIVKFLLS---KKADVR---AKCSMMVTPILAVSANMSEDSTDTNEII 178
PL LA +IV +L KKAD+R ++ + ++ ++A++ N E++ ++
Sbjct: 140 LPLSLAACTNQPHIVNYLTENPHKKADMRRQDSRGNTVLHALVAIADNTRENTKFVTKMY 199
Query: 179 SMLIENGA------NVREKMPFTDFSPLHFAVVKKNLSVVELLIK 217
+L+ A N+ + SPL A + + + +I+
Sbjct: 200 DLLLLKCARLFPDSNLEAVLNNDGLSPLMMAAKTGKIGIFQHIIR 244
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 105 MVTLLIHHGANV-NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAV 163
+++ I+ GA++ N D G T LHLA + K LL AD + +M TP+ A
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 164 SANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
S D + +L+ N A + +PL A ++E LI AD N
Sbjct: 63 V------SADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVN 116
Query: 224 LIVKVNQEPL 233
+ + + L
Sbjct: 117 AVDDLGKSAL 126
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 7/183 (3%)
Query: 33 FSEEDAFGYFLQGIINSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRT 92
+S DA L+ ++ ++ T L +AV + + LL D++ ++ DG T
Sbjct: 32 YSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTT 91
Query: 93 ALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
L +A L M+ LI+ A+VN D+ G + LH A + N + LL A+ +
Sbjct: 92 PLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 151
Query: 153 CSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVV 212
+ TP+ + E S +T ++ L+++ AN R+ D P A + + +V
Sbjct: 152 NNKEETPLFLAA---REGSYETAKV---LLDHFAN-RDITDHMDRLPRDIAQERMHHDIV 204
Query: 213 ELL 215
LL
Sbjct: 205 RLL 207
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 84 NEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLL 143
N+ + G TAL++A L+ A+ +D G TPLH A + + + LL
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILL 75
Query: 144 SKKA-DVRAKCSMMVTPILAVS----ANMSEDSTDTNEIISMLIENGANVREKMPFTDFS 198
+A D+ A+ TP++ + M ED +++ ++ + + G S
Sbjct: 76 RNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGK-----------S 124
Query: 199 PLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLN 251
LH+A N+ +L+K A+ ++ + P LF A S + + L+
Sbjct: 125 ALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETP-LFLAAREGSYETAKVLLD 176
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 566 IVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKH 625
I D + + N TG TALH+A R+ +D ++LL A ++D G+TPL
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSD-AAKRLLEASADAXIQD-NMGRTPLHA 61
Query: 626 A 626
A
Sbjct: 62 A 62
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 30/165 (18%)
Query: 83 VNEKLQD----GRTALYMAILQGLYKMVTLLIHHGANVN---------DRDEKGY----- 124
+N +D G+TAL++AI + V LL+ GA+V+ +DE GY
Sbjct: 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGE 141
Query: 125 TPLHLACYLGNKNIVKFLLS---KKADVR---AKCSMMVTPILAVSANMSEDSTDTNEII 178
PL LA +IV +L K+AD+R ++ + ++ ++A++ N E++ ++
Sbjct: 142 LPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY 201
Query: 179 SMLIENGA------NVREKMPFTDFSPLHFAVVKKNLSVVELLIK 217
+L+ A N+ + SPL A + + + +I+
Sbjct: 202 DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 166 NMSEDSTDTNEIISMLIENGANVREKM--PFTDF-----SPLHFAVVKKNLSVVELLIKC 218
N+S DT I+ + E N+RE + PF D + LH A+ ++ VELL++
Sbjct: 56 NLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK 115
Query: 219 KADTN 223
AD +
Sbjct: 116 GADVH 120
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVN----------DRDEKGY----TPLHLACYLGN 135
G+TAL++AI + +VTLL+ +GA+V + G+ PL LA
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 136 KNIVKFLLS---KKADVRAKCSMMVTPILAVSANMSEDSTDTNEIIS 179
IVKFLL + AD+ A+ S+ T +L +++++ D + ++
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNT-VLHALVEVADNTVDNTKFVT 206
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 84 NEKLQD--GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKF 141
N L+D G ++ A G + L+ A+VN D +G PLHLA G+ +V+F
Sbjct: 62 NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 142 LLSKKA 147
L+ A
Sbjct: 122 LVKHTA 127
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 82 DVNEKLQDGRTALYMAILQGLYKMVTLLIHHGA-NVNDRDEKGYTPLHLACYLGNKNIVK 140
DVN + +G L++A +G ++V L+ H A NV R+ KG T LA G +V
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 141 FLLSKKA 147
+ + A
Sbjct: 155 LMQANGA 161
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 259 ISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYL 318
+ D N+++H A G L +Q L++ + D+N ++ P+ A G H V E+L
Sbjct: 65 LKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG--HLRVVEFL 122
Query: 319 LQQDSINV 326
++ + NV
Sbjct: 123 VKHTASNV 130
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 549 ERRGSALIYVAWK-GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHH 607
+R G+A+I+ A + G+ + + LL+ ADVN + G LH+A + + +V L+ H
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK-EGHLRVVEFLVKH 125
Query: 608 GA 609
A
Sbjct: 126 TA 127
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 54 SVELTLLCSAVWDNKIREVEFLLST--GDHDVNEKL------QDGRTALYMAIL---QGL 102
+ +L LC AV K R++ LL D+ EK+ + TAL++A+ +
Sbjct: 128 AAKLHSLCEAV---KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 184
Query: 103 YKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI 160
+V L+ + N++ + KG T LH C N +K LL KA + TP+
Sbjct: 185 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL 242
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 566 IVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPL 623
IVD L+ N +++ ++ G TALH C N ++ LL A ++ + ++G+TPL
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCC-LTDNAECLKLLLRGKASIEIAN-ESGETPL 242
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 35.8 bits (81), Expect = 0.086, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 84 NEKLQD--GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKF 141
N L+D G ++ A G + L+ + A+VN D +G PLHLA G+ +V+F
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 142 LLSKKA 147
L+ A
Sbjct: 122 LVKHTA 127
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 82 DVNEKLQDGRTALYMAILQGLYKMVTLLIHHGA-NVNDRDEKGYTPLHLACYLGNKNIVK 140
DVN + +G L++A +G ++V L+ H A NV R+ KG T LA G +V
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 141 FLLSKKA 147
+ + A
Sbjct: 155 LMQANGA 161
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 549 ERRGSALIYVAWK-GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHH 607
+R G A+I+ A + G+ + + LL+N ADVN + G LH+A + + +V L+ H
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAK-EGHLRVVEFLVKH 125
Query: 608 GA 609
A
Sbjct: 126 TA 127
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 266 SLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSIN 325
+++H A G L +Q L++ + D+N ++ P+ A G H V E+L++ + N
Sbjct: 72 AVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEG--HLRVVEFLVKHTASN 129
Query: 326 V 326
V
Sbjct: 130 V 130
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADV 149
GRTAL + L G ++ L+ GAN + +D G+ +H A G + ++ LL +ADV
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G + V G EI LL GA+ + K TGF +H A R D + + LL + A
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL-QTLLENQADV 96
Query: 612 DMKDGKTGKTPLKHA 626
+++D + G PL A
Sbjct: 97 NIEDNE-GNLPLHLA 110
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 82 DVNEKLQDGRTALYMAILQGLYKMVTLLIHHGA-NVNDRDEKGYTPLHLACYLGNKNIVK 140
DVN + +G L++A +G ++V L+ H A NV R+ KG T LA G +V
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 141 FLLSKKA 147
+ + A
Sbjct: 155 LMQANGA 161
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 84 NEKLQD--GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKF 141
N L+D G ++ A G + L+ A+VN D +G PLHLA G+ +V+F
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 142 LLSKKA 147
L+ A
Sbjct: 122 LVKHTA 127
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 266 SLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSIN 325
+++H A G L +Q L++ + D+N ++ P+ A G H V E+L++ + N
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG--HLRVVEFLVKHTASN 129
Query: 326 V 326
V
Sbjct: 130 V 130
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 41/131 (31%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADV 149
GRTAL + L G ++ L+ GAN + +D G+ +H A G + ++ LL +ADV
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 150 RAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNL 209
+ +N N+ PLH A + +L
Sbjct: 97 NIE------------------------------DNEGNL----------PLHLAAKEGHL 116
Query: 210 SVVELLIKCKA 220
VVE L+K A
Sbjct: 117 RVVEFLVKHTA 127
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G + V G EI LL GA+ + K TGF +H A R D + + LL A
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL-QTLLEFQADV 96
Query: 612 DMKDGKTGKTPLKHA 626
+++D + G PL A
Sbjct: 97 NIEDNE-GNLPLHLA 110
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 82 DVNEKLQDGRTALYMAILQGLYKMVTLLIHHGA-NVNDRDEKGYTPLHLACYLGNKNIVK 140
DVN + +G L++A +G ++V L+ H A NV R+ KG T LA G +V
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 141 FLLSKKA 147
+ + A
Sbjct: 155 LMQANGA 161
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 84 NEKLQD--GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKF 141
N L+D G ++ A G + L+ A+VN D +G PLHLA G+ +V+F
Sbjct: 62 NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 142 LLSKKA 147
L+ A
Sbjct: 122 LVKHTA 127
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 266 SLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSIN 325
+++H A G L +Q L++ + D+N ++ P+ A G H V E+L++ + N
Sbjct: 72 AVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG--HLRVVEFLVKHTASN 129
Query: 326 V 326
V
Sbjct: 130 V 130
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 41/131 (31%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADV 149
GRTAL + L G ++ L+ GAN + +D G+ +H A G + ++ LL +ADV
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 150 RAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNL 209
+ +N N+ PLH A + +L
Sbjct: 97 NIE------------------------------DNEGNL----------PLHLAAKEGHL 116
Query: 210 SVVELLIKCKA 220
VVE L+K A
Sbjct: 117 RVVEFLVKHTA 127
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G + V G EI LL GA+ + K TGF +H A R D + + LL A
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTL-QTLLEFQADV 96
Query: 612 DMKDGKTGKTPLKHA 626
+++D + G PL A
Sbjct: 97 NIEDNE-GNLPLHLA 110
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 82 DVNEKLQDGRTALYMAILQGLYKMVTLLIHHGA-NVNDRDEKGYTPLHLACYLGNKNIVK 140
DVN + +G L++A +G ++V L+ H A NV R+ KG T LA G +V
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 141 FLLSKKA 147
+ + A
Sbjct: 155 LMQANGA 161
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 84 NEKLQD--GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKF 141
N L+D G ++ A G + L+ A+VN D +G PLHLA G+ +V+F
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 142 LLSKKA 147
L+ A
Sbjct: 122 LVKHTA 127
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 266 SLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSIN 325
+++H A G L +Q L++ + D+N ++ P+ A G H V E+L++ + N
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG--HLRVVEFLVKHTASN 129
Query: 326 V 326
V
Sbjct: 130 V 130
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 41/131 (31%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADV 149
GRTAL + L G ++ L+ GAN + +D G+ +H A G + ++ LL +ADV
Sbjct: 38 GRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 150 RAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNL 209
+ +N N+ PLH A + +L
Sbjct: 97 NIE------------------------------DNEGNL----------PLHLAAKEGHL 116
Query: 210 SVVELLIKCKA 220
VVE L+K A
Sbjct: 117 RVVEFLVKHTA 127
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
G + V G EI LL GA+ + K TGF +H A R D + + LL A
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL-QTLLEFQADV 96
Query: 612 DMKDGKTGKTPLKHA 626
+++D + G PL A
Sbjct: 97 NIEDNE-GNLPLHLA 110
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDV 257
+PLH A + NLS + + + N + K L ++A IVE N ++
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTAL-YWACHGGHKDIVEXLFTQPNIEL 133
Query: 258 SISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQN 294
+ + ++ LH A G IVQ+L+ + + +N
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRN 170
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 83 VNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFL 142
V E+ + L+ A +G + + + VN D+ G T L+ AC+ G+K+IV+ L
Sbjct: 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXL 125
Query: 143 LSK-KADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGA-----NVREKMPF 194
++ ++ + + T + A + D I+ +L+ GA N+ +K+ F
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYAD------IVQLLLAKGARTDLRNIEKKLAF 177
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 553 SALIYVAWKGYEEIVDLLLDNGADVNFKS 581
+AL AWKGY +IV LLL GA + ++
Sbjct: 142 TALHAAAWKGYADIVQLLLAKGARTDLRN 170
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 60/308 (19%), Positives = 120/308 (38%), Gaps = 48/308 (15%)
Query: 94 LYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKC 153
+++A +G V LI G + ++ G T LHLAC G + K+L S +V +
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV-GEVHSLW 82
Query: 154 SMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDF---------------- 197
LAV AN ++ ++ L+E GA R + P +
Sbjct: 83 HGQKPIHLAVXANKTD-------LVVALVE-GAKERGQXPESLLNECDEREVNEIGSHVK 134
Query: 198 -----SPLHFAVV--KKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKI---VE 247
+ LH+ V + L +++L++ A K ++ PL N + +
Sbjct: 135 HCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXD 194
Query: 248 AFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGM 307
+ + + ++ NS LH A + + V+ D+N ++ P++ ++
Sbjct: 195 TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRA 254
Query: 308 GRKHTHVAEYLLQQDSI---------NVNLPIKRPNLLLDTVMSLKDPKVMSQTQI--KR 356
+ + LLQ+ + N + + LD V + DP Q+ ++
Sbjct: 255 AX--VLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK 312
Query: 357 LDQIIKRI 364
LD++++ +
Sbjct: 313 LDEVVRSL 320
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 559 AWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDN 599
A KG + V L++ G ++ G TALH+AC+F D
Sbjct: 28 ARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDT 68
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 82 DVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKF 141
D++ ++ DG T L +A L M+ LI+ A+VN D+ G + LH A + N +
Sbjct: 7 DLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 66
Query: 142 LLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLH 201
LL A+ + + TP+ + E S +T ++ L+++ AN R+ D P
Sbjct: 67 LLKNGANKDMQNNKEETPLFLAA---REGSYETAKV---LLDHFAN-RDITDHMDRLPRD 119
Query: 202 FAVVKKNLSVVELL 215
A + + +V LL
Sbjct: 120 IAQERMHHDIVRLL 133
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 63 AVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEK 122
A+ DN +R V LL+ G + L + L+ A K+V +L+ G + + D+K
Sbjct: 38 AIADNNVRLVCTLLNAG---ALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDK 94
Query: 123 GYTPLHLACYLGNKNIVKFLLSK 145
G T L+ A GN VK + K
Sbjct: 95 GNTALYYAVDSGNXQTVKLFVKK 117
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 81/219 (36%), Gaps = 49/219 (22%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADV 149
G +A Y AI ++V L++ GA N + + PLH A L + IVK LL D
Sbjct: 31 GHSASYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQAATLEDTKIVKILLFSGLD- 87
Query: 150 RAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNL 209
DS ++ N + L++AV N
Sbjct: 88 --------------------DSQ---------FDDKGN----------TALYYAVDSGNX 108
Query: 210 SVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNS--KNFDVSISDGDLNSL 267
V+L +K K + + A+ N V IV FL+ FD++I L S
Sbjct: 109 QTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYFLSEIPSTFDLAI----LLSC 164
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNR-YFLPPMFFAI 305
+H G++ +L+ N N F+P + AI
Sbjct: 165 IHITIKNGHVDXXILLLDYXTSTNTNNSLLFIPDIKLAI 203
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 33 FSEEDAFGYFLQGIINSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRT 92
F+ FG L G ++ + + + L L + V+F++ G H ++ K DG T
Sbjct: 152 FANGQDFGQPLPGP-DAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNT 209
Query: 93 ALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
AL+ A L + LL+ A V +E G T L +A
Sbjct: 210 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 566 IVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHG 608
+VD ++ NG ++ K+A G TALH A ++ D + KLL G
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL--KLLLKG 229
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 33 FSEEDAFGYFLQGIINSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRT 92
F+ FG L G ++ + + + L L + V+F++ G H ++ K DG T
Sbjct: 171 FANGQDFGQPLPGP-DAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNT 228
Query: 93 ALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
AL+ A L + LL+ A V +E G T L +A
Sbjct: 229 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 556 IYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHG 608
+ VA + +VD ++ NG ++ K+A G TALH A ++ D + KLL G
Sbjct: 198 VKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL--KLLLKG 248
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRD-----EKGYT--------PLHLACYLGNK 136
G +AL++AI + + V LL+ +GANV+ R +KG PL LA
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQW 154
Query: 137 NIVKFLLS---KKADVRAKCSMMVT---PILAVSANMSEDSTDTNEIISMLIENGANVRE 190
++V +LL + A ++A S T ++ +S N +E+ L++ GA +
Sbjct: 155 DVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLCP 214
Query: 191 KMP------FTDFSPLHFAVVKKNLSVVELLIK 217
+ D +PL A + + + +++
Sbjct: 215 TVQLEDIRNLQDLTPLKLAAKEGKIEIFRHILQ 247
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 169 EDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKV 228
ED + E++ +I+ + EK+ L+ VVK +E ADTNL V
Sbjct: 293 EDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYV-- 350
Query: 229 NQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVG 275
L +I S + ++A+ + ++ + DG + H +G
Sbjct: 351 ----LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393
>pdb|3T8K|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
pdb|3T8K|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
Length = 186
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 138 IVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANV 188
I FL++K AD++++ T + D T T E+ + +E GA++
Sbjct: 57 ISXFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI 107
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 530 KYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT-AL 588
+ + V++ +E GA N + R G I V G ++ +LLL +GA+ N T +
Sbjct: 24 QVETVRQLLEAGADPN-ALNRFGRRPIQVMMMGSAQVAELLLLHGAEPNCADPATLTRPV 82
Query: 589 HMACRFHSNDNIVRKLLHH-GAYYDMKDGKTGKTPLKHAEAGKNR 632
H A R D +V +LH GA D+ D G+ P+ AE +R
Sbjct: 83 HDAAREGFLDTLV--VLHRAGARLDVCDA-WGRLPVDLAEEQGHR 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,358,118
Number of Sequences: 62578
Number of extensions: 747091
Number of successful extensions: 3494
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1869
Number of HSP's gapped (non-prelim): 997
length of query: 710
length of database: 14,973,337
effective HSP length: 106
effective length of query: 604
effective length of database: 8,340,069
effective search space: 5037401676
effective search space used: 5037401676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)