RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15068
(710 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 254 bits (651), Expect = 2e-77
Identities = 107/531 (20%), Positives = 180/531 (33%), Gaps = 111/531 (20%)
Query: 82 DVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKF 141
+ G T L++A G +V L+ GA+ N + K TPLH+A G+ + K+
Sbjct: 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY 65
Query: 142 LLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLH 201
LL KA V AK TP+ + ++ +L+EN AN +PLH
Sbjct: 66 LLQNKAKVNAKAKDDQTPLHCAARIGHT------NMVKLLLENNANPNLAT-TAGHTPLH 118
Query: 202 FAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISD 261
A + ++ V L++ +A + K P L A + V++ E L ++ + +
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVRVAE-LLLERDAHPNAAG 176
Query: 262 GDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQ 321
+ + LH A H NL IV++L+ R ++ P+ A VA LLQ
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN--QVEVARSLLQY 234
Query: 322 DSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITP 381
+ NAE +TP
Sbjct: 235 GG----------------------------------------------SANAESVQGVTP 248
Query: 382 LLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMV 441
L AA+ + L+ K AN N + + L + ++ +
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGN-------------LGNKSGLTPLHLVAQE-GHVPVA 294
Query: 442 KLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAH 501
+L+ HG V+ T+ PL VA G+ ++VK L + A ++ + A
Sbjct: 295 DVLIKHGVMVDATTRM-GYTPLHVASHYGNIKLVKFLLQHQADVNAKTK-LGYSPLHQA- 351
Query: 502 STTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWK 561
+ D V +++GA N S + L
Sbjct: 352 ------------------------AQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL 387
Query: 562 GYEEIVDLL---LDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA 609
GY + D+L D + V + V ++L
Sbjct: 388 GYISVTDVLKVVTDETSFVLVSDKHRMSFPE----------TVDEILDVSE 428
Score = 252 bits (647), Expect = 6e-77
Identities = 118/529 (22%), Positives = 187/529 (35%), Gaps = 119/529 (22%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
LT L A + + V+ LL G N T L+MA G ++ L+ + A V
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRG-ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNE 176
N + + TPLH A +G+ N+VK LL A+ + TP+ + E
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV------E 127
Query: 177 IISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFF 236
+ L+E A+ F+PLH A + V ELL++ A N K P L
Sbjct: 128 TVLALLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP-LHV 185
Query: 237 AIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
A+ N++ IV+ L + + + LH A +++ + L++ NA++
Sbjct: 186 AVHHNNLDIVK-LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 244
Query: 297 FLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKR 356
+ P+ A G H + LL + +
Sbjct: 245 GVTPLHLAAQEG--HAEMVALLLSKQA--------------------------------- 269
Query: 357 LDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISD 416
N N +TPL A+ + A LI+ G V+
Sbjct: 270 -------------NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD----------- 305
Query: 417 ARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVK 476
++ + L A H NI++VK LL H ADVN + PL A Q G IV
Sbjct: 306 --ATTRMGYTPLHVAS-HYGNIKLVKFLLQHQADVNAKTKL-GYSPLHQAAQQGHTDIVT 361
Query: 477 ELQNYGAQIDKENYLKNKE-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSN 529
L GA ++ + + A R+ + + D+LK+
Sbjct: 362 LLLKNGASPNE----VSSDGTTPLAIAKRLGY--------ISVTDVLKV----------- 398
Query: 530 KYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVN 578
++ + V VS + R S E VD +LD D
Sbjct: 399 -------VTDETSFVLVSDKHRMSFP---------ETVDEILDVSEDEG 431
Score = 250 bits (641), Expect = 4e-76
Identities = 113/536 (21%), Positives = 191/536 (35%), Gaps = 111/536 (20%)
Query: 112 HGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDS 171
G + E G TPLH+A ++G+ IVK LL + A + TP+ +
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT-- 60
Query: 172 TDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQE 231
E+ L++N A V K D +PLH A + ++V+LL++ A+ NL
Sbjct: 61 ----EVAKYLLQNKAKVNAKAKD-DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHT 115
Query: 232 PLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDIN 291
P L A V+ V L K + + LH A G +++ ++L++R N
Sbjct: 116 P-LHIAAREGHVETVL-ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173
Query: 292 AQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQ 351
A + L P+ A+ + + + LL +
Sbjct: 174 AAGKNGLTPLHVAVHHN--NLDIVKLLLPRGG---------------------------- 203
Query: 352 TQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQK 411
+ ++ + TPL AAK ++ A+ L+Q G + N
Sbjct: 204 ------------------SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN------ 239
Query: 412 AFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGD 471
+ + L A + + + EMV LLL A+ N NK PL + Q G
Sbjct: 240 -------AESVQGVTPLHLAAQ-EGHAEMVALLLSKQANGN-LGNKSGLTPLHLVAQEGH 290
Query: 472 FQIVKELQNYGAQIDKENYLKNKEAA-RIAHSTTELEERKKINDLLKLNLDFLKNVRSNK 530
+ L +G +D + +A
Sbjct: 291 VPVADVLIKHGVMVDATT--RMGYTPLHVA-------------------------SHYGN 323
Query: 531 YDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHM 590
VK ++ A VN ++ S L A +G+ +IV LLL NGA N S+ G T L +
Sbjct: 324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383
Query: 591 ACRFHSNDNIVRKL---LHHGAYYDMKDGKTGKTPLKHAE------AGKNRDIIDL 637
A R ++ L ++ + D K + + + + ++I
Sbjct: 384 AKR-LGYISVTDVLKVVTDETSFVLVSD-KHRMSFPETVDEILDVSEDEGEELISF 437
Score = 186 bits (476), Expect = 2e-52
Identities = 85/456 (18%), Positives = 148/456 (32%), Gaps = 129/456 (28%)
Query: 184 NGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSV 243
G + +PLH A +L +V+ L++ A N
Sbjct: 3 PGISGGGGGES-GLTPLHVASFMGHLPIVKNLLQRGASPN-------------------- 41
Query: 244 KIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFF 303
+S+ + + LH A G+ ++ + L++ K +NA+ + P+
Sbjct: 42 ---------------VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHC 86
Query: 304 AIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKR 363
A +G HT++ + LL+ ++
Sbjct: 87 AARIG--HTNMVKLLLENNA---------------------------------------- 104
Query: 364 IIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFC 423
N N TPL AA+ +++ L++K A+
Sbjct: 105 ------NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA-------------CMTKK 145
Query: 424 FRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGA 483
+ L A K + + +LLL A N PL VA+ + IVK L G
Sbjct: 146 GFTPLHVAAK-YGKVRVAELLLERDAHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRGG 203
Query: 484 QIDKENYLKNKEAA-RIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGA 542
N IA + N+ + + ++ G
Sbjct: 204 SPHSPA--WNGYTPLHIA-------------------------AKQNQVEVARSLLQYGG 236
Query: 543 CVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVR 602
N S + + L A +G+ E+V LLL A+ N + +G T LH+ + + +
Sbjct: 237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ-EGHVPVAD 295
Query: 603 KLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
L+ HG D + G TPL A N ++ L
Sbjct: 296 VLIKHGVMVDATT-RMGYTPLHVASHYGNIKLVKFL 330
Score = 34.4 bits (80), Expect = 0.13
Identities = 8/63 (12%), Positives = 16/63 (25%), Gaps = 11/63 (17%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDH--DVNEKLQDGRTALYMAILQGLYKMVTLLIHHGAN 115
T L A I + L D V + + + V ++ +
Sbjct: 379 TPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP---------ETVDEILDVSED 429
Query: 116 VND 118
+
Sbjct: 430 EGE 432
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 211 bits (539), Expect = 4e-62
Identities = 59/558 (10%), Positives = 137/558 (24%), Gaps = 203/558 (36%)
Query: 75 LLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLG 134
+ + + + +++A +G V LI G + ++ G T LHLAC G
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64
Query: 135 NKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPF 194
+ K+L S +G
Sbjct: 65 CVDTAKYLASVGEVHSLW-------------------------------HG--------- 84
Query: 195 TDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKN 254
P+H AV+ +V L++ +
Sbjct: 85 --QKPIHLAVMANKTDLVVALVEGAKERG------------------------------- 111
Query: 255 FDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHV 314
++ + + ++ + + +G+G ++ +
Sbjct: 112 ----------QMPESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGPEYLEM 155
Query: 315 AEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAE 374
+ L+Q + + A+
Sbjct: 156 IKILVQLGA----------------------------------------------SPTAK 169
Query: 375 GDDMITPLLFAAKHCDLQSAKYLI-----QKGANVNLTETQKAFISDARSSDFCFRSALQ 429
TPL+ A + + ++ ++ + ++ ++ S L
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD-------------YANKQGNSHLH 216
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
+A N ++ + G DVN N+ PL +++++ + KEL +
Sbjct: 217 WAIL-INWEDVAMRFVEMGIDVNMEDNE-HTVPLYLSVRAAMVLLTKELLQKTDVFLIQA 274
Query: 490 YLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSE 549
+ +G V
Sbjct: 275 CPYH----------------------------------------------NGTTVLPDRV 288
Query: 550 RRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA 609
+ A +E++ LL + +V TG + + + R L A
Sbjct: 289 VWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKK-KAAPAVKRMKLAPSA 347
Query: 610 YYDMKDGKTGKTPLKHAE 627
+ ++ ++
Sbjct: 348 PVRTRS-RSRARSSAVSK 364
Score = 140 bits (355), Expect = 1e-36
Identities = 51/422 (12%), Positives = 99/422 (23%), Gaps = 114/422 (27%)
Query: 248 AFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGM 307
+ + + SD + +H A G V+ L++ QNR+ + A
Sbjct: 4 SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63
Query: 308 GRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDR 367
G A+YL
Sbjct: 64 G--CVDTAKYLASVGE-------------------------------------------- 77
Query: 368 TENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLT-----------ETQKAFISD 416
+ P+ A L++ E +
Sbjct: 78 --VHSLW--HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEI---G 130
Query: 417 ARSSDFCFRSALQYACKHKNN-IEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIV 475
+ ++AL + +EM+K+L+ GA +K + PL A++ + + +
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT-AKDKADETPLMRAMEFRNREAL 189
Query: 476 KEL-----QNYGAQIDKENYLKNKEAA-RIAHSTTELEERKKINDLLKLNLDFLKNVRSN 529
+ ++D N K + A + N
Sbjct: 190 DLMMDTVPSKSSLRLDYAN--KQGNSHLHWA-------------------------ILIN 222
Query: 530 KYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLD-------------NGAD 576
D + +E G VN+ L + LL NG
Sbjct: 223 WEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTT 282
Query: 577 VNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIID 636
V + A + +++ L TG + +
Sbjct: 283 VLPDRVVWLDFVPAAADPSKQE-VLQLLQEKLDEVVRSL-NTGAGGAVKRKKKAAPAVKR 340
Query: 637 LL 638
+
Sbjct: 341 MK 342
Score = 128 bits (324), Expect = 2e-32
Identities = 43/370 (11%), Positives = 89/370 (24%), Gaps = 127/370 (34%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGD--------------------HDVNEKLQDGRTALYMA 97
+ AV NK V L+ + K G+TAL+
Sbjct: 86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWC 145
Query: 98 ILQGLY--KMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSM 155
+ G +M+ +L+ GA+ +D+ TPL A N+ + ++
Sbjct: 146 VGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK------ 199
Query: 156 MVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELL 215
+ + S LH+A++ V
Sbjct: 200 ----------------------------SSLRLDYANKQ-GNSHLHWAILINWEDVAMRF 230
Query: 216 IKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVG 275
++ D N+ + PL + ++ + V + + L + D+ + H G
Sbjct: 231 VEMGIDVNMEDNEHTVPL-YLSVRAAMVLLTK-EL--------LQKTDVFLIQACPYHNG 280
Query: 276 NLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNL 335
+ +L + A V + L ++
Sbjct: 281 T------------TVLPDRVVWLDFVPAAADPS--KQEVLQLLQEKLD------------ 314
Query: 336 LLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAK 395
+ + + K +
Sbjct: 315 ----------------------------------EVVRSLNTGAGGAVKRKKKAAPAVKR 340
Query: 396 YLIQKGANVN 405
+ A V
Sbjct: 341 MKLAPSAPVR 350
Score = 92.6 bits (231), Expect = 2e-20
Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 12/107 (11%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDH------------DVNEKLQDGRTALYMAILQGLYKM 105
L +V + + LL D V + A ++
Sbjct: 246 VPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEV 305
Query: 106 VTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
+ LL V G + + L+ A VR +
Sbjct: 306 LQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTR 352
Score = 72.2 bits (178), Expect = 1e-13
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
L + +A +K ++ L D +V L G + + + + A V
Sbjct: 291 LDFVPAAADPSKQEVLQLLQEKLD-EVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPV 349
Query: 117 NDRDEKGYTPLHLA 130
R ++
Sbjct: 350 RTRSRSRARSSAVS 363
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 196 bits (500), Expect = 9e-57
Identities = 78/417 (18%), Positives = 143/417 (34%), Gaps = 95/417 (22%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
LL +A N+ + + L + + T L++A ++V LL+ HGA+V+
Sbjct: 27 ELLEAARSGNEEKLMALLTPLN-VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH 85
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEI 177
+D+ G PLH AC G+ + + LL A V A TP+ ++ E+
Sbjct: 86 AKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV------EV 139
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
S+L+ +GA+ S + A + + K + LL A
Sbjct: 140 CSLLLSHGADPTLVNCH-GKSAVDMAPTPELRERLTYEFKGHS------------LLQAA 186
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKAC---HVGNLQIVQMLVKRKFDINAQN 294
E++ K+ + + + LH A H Q+ ++L+++ ++N +N
Sbjct: 187 READLAKVKK--TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244
Query: 295 RYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQI 354
+ F+ P+ A H V E L + +
Sbjct: 245 KDFMTPLHVAAERA--HNDVMEVLHKHGA------------------------------- 271
Query: 355 KRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFI 414
+NA T L AA LQ+ + L+ G++ ++ Q
Sbjct: 272 ---------------KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG--- 313
Query: 415 SDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGD 471
+A Q E V+ +L + + L A ++GD
Sbjct: 314 ----------FTAAQMGN------EAVQQILSESTPMRTSDVD---YRLLEASKAGD 351
Score = 185 bits (472), Expect = 7e-53
Identities = 84/433 (19%), Positives = 146/433 (33%), Gaps = 93/433 (21%)
Query: 70 REVEFLLSTGDHDVNEKLQDGRTALYMAILQG-LYKMVTLLIHHGANVNDRDEKGYTPLH 128
+ L + + L A G K++ LL N + D + TPLH
Sbjct: 5 KSALDLADPS-AKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLH 63
Query: 129 LACYLGNKNIVKFLLSKKADVRAKCSMMVTP-ILAVSANMSEDSTDTNEIISMLIENGAN 187
LA IV+ LL ADV AK + P A S E+ +L+++GA
Sbjct: 64 LAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGH-------YEVTELLLKHGAC 116
Query: 188 VREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVE 247
V F+PLH A K + V LL+ AD L+ + + A + +
Sbjct: 117 VNAMD-LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSA-VDMAPTPELRERLT 174
Query: 248 AFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGM 307
+SLL A +L V+ + + Q + + A+
Sbjct: 175 YEFKG------------HSLLQAARE-ADLAKVKKTLALEIINFKQPQSHETALHCAVAS 221
Query: 308 G-RKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIID 366
K VAE LL++ +
Sbjct: 222 LHPKRKQVAELLLRKGA------------------------------------------- 238
Query: 367 RTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRS 426
N+N + D +TPL AA+ + L + GA +N + D ++
Sbjct: 239 ---NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN-------------ALDSLGQT 282
Query: 427 ALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQID 486
AL A +++ +LLL +G+D + S + + + V+++ + +
Sbjct: 283 ALHRAALA-GHLQTCRLLLSYGSDPSIISLQ-GFTAAQMGN-----EAVQQILSESTPMR 335
Query: 487 -KENYLKNKEAAR 498
+ + EA++
Sbjct: 336 TSDVDYRLLEASK 348
Score = 164 bits (417), Expect = 3e-45
Identities = 80/421 (19%), Positives = 139/421 (33%), Gaps = 111/421 (26%)
Query: 211 VVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHK 270
L A L + ++ LL A N K++ L N + SDG ++ LH
Sbjct: 6 SALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMA-LLTPLNVNCHASDGRKSTPLHL 64
Query: 271 ACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPI 330
A ++IVQ+L++ D++A+++ L P+ A G H V E LL+ +
Sbjct: 65 AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG--HYEVTELLLKHGA------- 115
Query: 331 KRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCD 390
+NA TPL AA
Sbjct: 116 ---------------------------------------CVNAMDLWQFTPLHEAASKNR 136
Query: 391 LQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGAD 450
++ L+ GA+ L +SA+ A E + +
Sbjct: 137 VEVCSLLLSHGADPTLVNCHG-------------KSAVDMAPT-PELRERLTYEFKGHSL 182
Query: 451 VNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE-----AARIAHSTTE 505
+ A + D VK+ K+ ++ E A H
Sbjct: 183 LQ-------------AAREADLAKVKKTLALEIINFKQP--QSHETALHCAVASLH---- 223
Query: 506 LEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEE 565
+RK++ +LL + GA VN ++ + L A + + +
Sbjct: 224 -PKRKQVAELL---------------------LRKGANVNEKNKDFMTPLHVAAERAHND 261
Query: 566 IVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKH 625
++++L +GA +N + G TALH A + R LL +G+ + G T +
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRAAL-AGHLQTCRLLLSYGSDPSIIS-LQGFTAAQM 319
Query: 626 A 626
Sbjct: 320 G 320
Score = 159 bits (406), Expect = 1e-43
Identities = 81/549 (14%), Positives = 135/549 (24%), Gaps = 216/549 (39%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGN-KNIVKFLLSKKA 147
G++AL L A E L A GN + ++ L
Sbjct: 3 FGKSAL-------------DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV 49
Query: 148 DVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKK 207
+ A +PLH A
Sbjct: 50 NCHASD-----------------------------GRK-----------STPLHLAAGYN 69
Query: 208 NLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSL 267
+ +V+LL++ AD + D
Sbjct: 70 RVRIVQLLLQHGADVH-----------------------------------AKDKGGLVP 94
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
LH AC G+ ++ ++L+K +NA + + P+ A V LL +
Sbjct: 95 LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKN--RVEVCSLLLSHGA---- 148
Query: 328 LPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAK 387
+ + + A
Sbjct: 149 ------------------------------------------DPTLVNCHGKSAVDMAPT 166
Query: 388 HCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLH 447
+ Y + + LQ A + ++ VK L
Sbjct: 167 PELRERLTYEFKGHS------------------------LLQAARE--ADLAKVKKTLAL 200
Query: 448 GADVNDTSNKPKQKPLAVAIQSGDF---QIVKELQNYGAQIDKENYLKNKE-------AA 497
+ L A+ S Q+ + L GA +++ KNK+ AA
Sbjct: 201 EIINFKQPQS-HETALHCAVASLHPKRKQVAELLLRKGANVNE----KNKDFMTPLHVAA 255
Query: 498 RIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIY 557
AH + ++L + GA +N +AL
Sbjct: 256 ERAH--------NDVMEVL---------------------HKHGAKMNALDSLGQTALHR 286
Query: 558 VAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGK 617
A G+ + LLL G+D + S GFTA M V+++L
Sbjct: 287 AALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE------AVQQILSEST---PMRTS 337
Query: 618 TGKTPLKHA 626
L A
Sbjct: 338 DVDYRLLEA 346
Score = 154 bits (391), Expect = 1e-41
Identities = 63/292 (21%), Positives = 109/292 (37%), Gaps = 39/292 (13%)
Query: 357 LDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISD 416
++++ + N +A TPL AA + ++ + L+Q GA+V+ +
Sbjct: 37 EEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG----- 91
Query: 417 ARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVK 476
L AC + + E+ +LLL HGA VN + PL A ++
Sbjct: 92 --------LVPLHNACSY-GHYEVTELLLKHGACVNAMDLW-QFTPLHEAASKNRVEVCS 141
Query: 477 ELQNYGAQIDKENYLKNKE-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSN 529
L ++GA N A E ++ L+ R
Sbjct: 142 LLLSHGADPTL----VNCHGKSAVDMAPT--------PELRERLTYEFKGHSLLQAAREA 189
Query: 530 KYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYE---EIVDLLLDNGADVNFKSATGFT 586
+VKK + + +AL + ++ +LLL GA+VN K+ T
Sbjct: 190 DLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMT 249
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
LH+A ++++++ L HGA + D G+T L A + LL
Sbjct: 250 PLHVAAE-RAHNDVMEVLHKHGAKMNALD-SLGQTALHRAALAGHLQTCRLL 299
Score = 145 bits (369), Expect = 1e-38
Identities = 51/274 (18%), Positives = 94/274 (34%), Gaps = 33/274 (12%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
L L +A E LL G VN T L+ A + ++ +LL+ HGA+
Sbjct: 92 LVPLHNACSYGHYEVTELLLKHGA-CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNE 176
+ G + + +A + + + + + A D +
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGH-----------SLLQAAREA------DLAK 193
Query: 177 IISMLIENGANVREKMPFTDFSPLHFAVVK---KNLSVVELLIKCKADTNLIVKVNQEPL 233
+ L N ++ + + LH AV K V ELL++ A+ N K PL
Sbjct: 194 VKKTLALEIINFKQPQ--SHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL 251
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
A E ++E L+ ++ D + LH+A G+LQ ++L+ D +
Sbjct: 252 -HVAAERAHNDVME-VLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309
Query: 294 NRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
+ + +L + +
Sbjct: 310 SLQGFTAAQMG-------NEAVQQILSES-TPMR 335
Score = 121 bits (305), Expect = 5e-30
Identities = 54/298 (18%), Positives = 92/298 (30%), Gaps = 76/298 (25%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQS-AKYLIQKGANVNLTETQKAFISDARSSDFCFRSAL 428
G+ LL AA+ + + L N + +SD + L
Sbjct: 16 KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCH-------------ASDGRKSTPL 62
Query: 429 QYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKE 488
A + N + +V+LLL HGADV+ PL A G +++ + L +GA ++
Sbjct: 63 HLAAGY-NRVRIVQLLLQHGADVHAKDKG-GLVPLHNACSYGHYEVTELLLKHGACVNAM 120
Query: 489 NYLKNKE-----AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGAC 543
+ + AA ++ LL + GA
Sbjct: 121 D--LWQFTPLHEAASKNR--------VEVCSLL---------------------LSHGAD 149
Query: 544 VNVSSERRGSALIYVAWKGYEEIVDLLLDN---------------------GADVNFKSA 582
+ + SA+ E + +
Sbjct: 150 PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ 209
Query: 583 TGFTALHMACR--FHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+ TALH A + LL GA + K+ K TPL A + D++++L
Sbjct: 210 SHETALHCAVASLHPKRKQVAELLLRKGANVNEKN-KDFMTPLHVAAERAHNDVMEVL 266
Score = 111 bits (279), Expect = 9e-27
Identities = 52/270 (19%), Positives = 88/270 (32%), Gaps = 68/270 (25%)
Query: 394 AKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVND 453
A L A LT K + L A + N +++ LL + +
Sbjct: 7 ALDLADPSAKAVLTGEYK-------------KDELLEAARSGNEEKLMALLTPLNVNCH- 52
Query: 454 TSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAA-RIAHSTTELEERKKI 512
S+ K PL +A +IV+ L +GA + ++ K A
Sbjct: 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKD--KGGLVPLHNA------------ 98
Query: 513 NDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLD 572
Y+ + ++ GACVN + + L A K E+ LLL
Sbjct: 99 -------------CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145
Query: 573 NGADVNFKSATGFTALHMACRFHS--------------------NDNIVRKLLHHGAYYD 612
+GAD + G +A+ MA + V+K L
Sbjct: 146 HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF 205
Query: 613 MKDGKTGKTPLKH--AEAG--KNRDIIDLL 638
+ ++ +T L H + K + + +LL
Sbjct: 206 KQP-QSHETAL-HCAVASLHPKRKQVAELL 233
Score = 93.3 bits (233), Expect = 1e-20
Identities = 40/205 (19%), Positives = 65/205 (31%), Gaps = 38/205 (18%)
Query: 439 EMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE--- 495
+ L A T K + L A + +++ L + K
Sbjct: 5 KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASD--GRKSTPL 62
Query: 496 --AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGS 553
AA +I LL ++ GA V+ +
Sbjct: 63 HLAAGYNR--------VRIVQLL---------------------LQHGADVHAKDKGGLV 93
Query: 554 ALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDM 613
L G+ E+ +LLL +GA VN FT LH A + + LL HGA +
Sbjct: 94 PLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS-KNRVEVCSLLLSHGADPTL 152
Query: 614 KDGKTGKTPLKHAEAGKNRDIIDLL 638
+ GK+ + A + R+ +
Sbjct: 153 VN-CHGKSAVDMAPTPELRERLTYE 176
Score = 59.0 bits (144), Expect = 2e-09
Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 563 YEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTP 622
+ + L D A L A R + + ++ L D TP
Sbjct: 3 FGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASD-GRKSTP 61
Query: 623 LKHAEAGKNR-DIIDLL 638
L H AG NR I+ LL
Sbjct: 62 L-HLAAGYNRVRIVQLL 77
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 165 bits (420), Expect = 2e-46
Identities = 55/275 (20%), Positives = 91/275 (33%), Gaps = 14/275 (5%)
Query: 58 TLLCSAVWDNKIREVEFLLSTG--DHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGAN 115
T L AV ++FLL ++ + G+TAL++A + G V L GA
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 116 VNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDST--- 172
V + G+T LHLAC + LL + S + +
Sbjct: 71 VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130
Query: 173 -----DTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVK 227
NE + + + +PLH AV+ K+ +V LL AD N
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENYD-GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189
Query: 228 VNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRK 287
L A+E+ + ++E L D + + L A N + ++L
Sbjct: 190 TCGRTPLHLAVEAQAASVLE-LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248
Query: 288 FDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQD 322
L P + + + + D
Sbjct: 249 APEPEDGGDKLSPCSSSGSDS--DSDNRDEGDEYD 281
Score = 153 bits (388), Expect = 6e-42
Identities = 54/404 (13%), Positives = 105/404 (25%), Gaps = 128/404 (31%)
Query: 83 VNEKLQDGRTALYMAILQGLYKMVTLLIHHGAN---VNDRDEKGYTPLHLACYLGNKNIV 139
+DG TAL++A++ + L+ A ++ +++ G T LHLA LG + V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 140 KFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSP 199
+ L + A V G +
Sbjct: 62 EKLYAAGAGVLVAE-----------------------------RGG-----------HTA 81
Query: 200 LHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSI 259
LH A + + +L++ + + +++ D +
Sbjct: 82 LHLACRVRAHTCACVLLQPRPSHP--------------------RDASDTYLTQSQDCTP 121
Query: 260 SDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLL 319
+ + + + A+N P+ A+ + L
Sbjct: 122 DTSHA-PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK--DAEMVRLLR 178
Query: 320 QQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINA-EGDDM 378
+ ++N E
Sbjct: 179 DAGA----------------------------------------------DLNKPEPTCG 192
Query: 379 ITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNI 438
TPL A + + L++ GA+ + + R+ L A + N
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPT-------------ARMYGGRTPLGSAL-LRPNP 238
Query: 439 EMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYG 482
+ +LL HGA K P + + D E Y
Sbjct: 239 ILARLLRAHGAPEP-EDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 138 bits (349), Expect = 1e-36
Identities = 51/269 (18%), Positives = 85/269 (31%), Gaps = 27/269 (10%)
Query: 371 INAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQY 430
+D T L A H +L+ A + Q + ++AL
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ----------NDLGQTALHL 51
Query: 431 ACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENY 490
A V+ L GA V L +A + L ++
Sbjct: 52 AAIL-GEASTVEKLYAAGAGVLVAERG-GHTALHLACRVRAHTCACVLLQPRPSHPRDA- 108
Query: 491 LKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSER 550
S T L + + + + + + +E ++ + + +
Sbjct: 109 -----------SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157
Query: 551 RGSALIYVAWKGYEEIVDLLLDNGADVNFKSAT-GFTALHMACRFHSNDNIVRKLLHHGA 609
+ L E+V LL D GAD+N T G T LH+A +++ LL GA
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAASVLELLLKAGA 216
Query: 610 YYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+ G+TPL A N + LL
Sbjct: 217 DPTARM-YGGRTPLGSALLRPNPILARLL 244
Score = 131 bits (333), Expect = 2e-34
Identities = 50/292 (17%), Positives = 84/292 (28%), Gaps = 70/292 (23%)
Query: 368 TENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSA 427
E ++ + D T L AA + + + L GA V + E +A
Sbjct: 35 HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGG-------------HTA 81
Query: 428 LQYACKHKNNIEMVKLLLLHGADVN------------DTSNKPKQKPLAVAIQSGDFQIV 475
L AC+ +LL D + P AV Q
Sbjct: 82 LHLACR-VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140
Query: 476 KE-LQNYGAQIDKENYLKNKE-------AARIAHSTTELEERKKINDLLKLNLDFLKNVR 527
+ +++ Q++ +N + A + ++ LL
Sbjct: 141 EPRDEDWRLQLEA----ENYDGHTPLHVAVI--------HKDAEMVRLL----------- 177
Query: 528 SNKYDEVKKNIEDGACVNVSSERRGS-ALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
+ GA +N G L +++LLL GAD + G T
Sbjct: 178 ----------RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT 227
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
L A + + R L HGA +P + + + D D
Sbjct: 228 PLGSALLRPNPI-LARLLRAHGAPEPEDG-GDKLSPCSSSGSDSDSDNRDEG 277
Score = 126 bits (319), Expect = 1e-32
Identities = 53/292 (18%), Positives = 90/292 (30%), Gaps = 49/292 (16%)
Query: 199 PLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVS 258
LH AV+ ++ ++ L+ A + + +N
Sbjct: 12 ALHLAVIHQHEPFLDFLLGFSAGHEYL-------------------------DLQN---- 42
Query: 259 ISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYL 318
G + LH A +G V+ L + R + A + A L
Sbjct: 43 -DLG--QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVR--AHTCACVL 97
Query: 319 LQQD-SINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDD 377
LQ S + D +Q ++ R D + AE D
Sbjct: 98 LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD 157
Query: 378 MITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNN 437
TPL A H D + + L GA++N R+ L A
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLN-----------KPEPTCG-RTPLHLAV-EAQA 204
Query: 438 IEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
+++LLL GAD + PL A+ + + + L+ +GA ++
Sbjct: 205 ASVLELLLKAGADPTARMYG-GRTPLGSALLRPNPILARLLRAHGAPEPEDG 255
Score = 121 bits (307), Expect = 5e-31
Identities = 41/337 (12%), Positives = 79/337 (23%), Gaps = 79/337 (23%)
Query: 268 LHKACHVGNLQIVQMLVKR---KFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSI 324
LH A + + L+ ++ QN + A +G E L +
Sbjct: 13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG--EASTVEKLYAAGA- 69
Query: 325 NVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLF 384
+ T L
Sbjct: 70 ---------------------------------------------GVLVAERGGHTALHL 84
Query: 385 AAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLL 444
A + A L+Q + + + + + E
Sbjct: 85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144
Query: 445 LLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIA-HST 503
+ + PL VA+ D ++V+ L++ GA ++K R H
Sbjct: 145 EDWRLQLEAENYD-GHTPLHVAVIHKDAEMVRLLRDAGADLNK----PEPTCGRTPLHLA 199
Query: 504 TELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGY 563
E + + +LL ++ GA + L +
Sbjct: 200 VE-AQAASVLELL---------------------LKAGADPTARMYGGRTPLGSALLRPN 237
Query: 564 EEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNI 600
+ LL +GA + + +DN
Sbjct: 238 PILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274
Score = 120 bits (304), Expect = 1e-30
Identities = 34/168 (20%), Positives = 61/168 (36%), Gaps = 11/168 (6%)
Query: 52 AKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIH 111
+ + + + E + + DG T L++A++ +MV LL
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWR-LQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179
Query: 112 HGANVNDRDEK-GYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP-ILAVSANMSE 169
GA++N + G TPLHLA ++++ LL AD A+ TP A+
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP--- 236
Query: 170 DSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIK 217
+ +L +GA E SP + + + +
Sbjct: 237 ----NPILARLLRAHGAPEPEDGGD-KLSPCSSSGSDSDSDNRDEGDE 279
Score = 76.4 bits (189), Expect = 2e-15
Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 14/116 (12%)
Query: 540 DGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDN 599
+++ ++ +AL A G V+ L GA V G TALH+ACR
Sbjct: 34 GHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR-VRAHT 92
Query: 600 IVRKLLHHGAYYDMKD------------GKTGKTPLKHAEAGKNRDIIDLLHLIDN 643
LL + T P + + D
Sbjct: 93 CACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR-DEDW 147
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 165 bits (420), Expect = 2e-46
Identities = 68/372 (18%), Positives = 126/372 (33%), Gaps = 103/372 (27%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEK-GYTPLHLACYLGNKNIVKFLLSKKA 147
+ L A+ +V L+ GANVN ++E+ G+TPLH A + ++IV+ LL A
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 148 DVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTD---FSPLHFAV 204
D + TP L + S +++ + + GA+V E D F+ A
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSV------KLLKLFLSKGADVNEC----DFYGFTAFMEAA 113
Query: 205 VKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDL 264
V + ++ L K A+ NL D
Sbjct: 114 VYGKVKALKFLYKRGANVNL-------------------------RRKTKEDQERLRKGG 148
Query: 265 NSLLHKACHVGNLQIVQMLV-KRKFDINAQNRYFLPPMFFAIGMGRKHTH--VAEYLLQQ 321
+ L A G+++++++L+ + D+NA + + A+ + LL
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208
Query: 322 DSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITP 381
+ ++N G+ TP
Sbjct: 209 GA----------------------------------------------DVNVRGERGKTP 222
Query: 382 LLFAAKHCDLQSAKYLI-QKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEM 440
L+ A + L + L+ Q+ +N +D ++AL A + ++
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEIN-------------DTDSDGKTALLLAVE-LKLKKI 268
Query: 441 VKLLLLHGADVN 452
+LL GA +
Sbjct: 269 AELLCKRGASTD 280
Score = 149 bits (380), Expect = 7e-41
Identities = 60/255 (23%), Positives = 112/255 (43%), Gaps = 30/255 (11%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L +AV ++ VE LL G D + ++G T +A + G K++ L + GA+VN
Sbjct: 41 TPLHNAVQMSREDIVELLLRHG-ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK----------CSMMVTPILAVSANM 167
+ D G+T A G +KFL + A+V + T ++ +
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159
Query: 168 SEDSTDTNEIISMLI-ENGANVREKMPFTD---FSPLHFAVVKKNLS----VVELLIKCK 219
E++ +L+ E GA+V D + L A++ + S + LL+
Sbjct: 160 HV------EVLKILLDEMGADVNAC----DNMGRNALIHALLSSDDSDVEAITHLLLDHG 209
Query: 220 ADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQI 279
AD N+ + + P L A+E + +V+ L ++ +++ +D D + L A + +I
Sbjct: 210 ADVNVRGERGKTP-LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268
Query: 280 VQMLVKRKFDINAQN 294
++L KR + +
Sbjct: 269 AELLCKRGASTDCGD 283
Score = 141 bits (357), Expect = 1e-37
Identities = 73/370 (19%), Positives = 117/370 (31%), Gaps = 111/370 (30%)
Query: 265 NSLLHKACHVGNLQIVQMLVKRKFDINAQNRYF-LPPMFFAIGMGRKHTHVAEYLLQQDS 323
N LL KA ++ +VQ L++ ++N Q P+ A+ M + E LL+ +
Sbjct: 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS--REDIVELLLRHGA 63
Query: 324 INVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLL 383
+ + TP L
Sbjct: 64 ----------------------------------------------DPVLRKKNGATPFL 77
Query: 384 FAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKL 443
AA ++ K + KGA+VN DF +A A ++ +K
Sbjct: 78 LAAIAGSVKLLKLFLSKGADVN-------------ECDFYGFTAFMEAAV-YGKVKALKF 123
Query: 444 LLLHGADVNDTSNKPKQK---------PLAVAIQSGDFQIVKEL-QNYGAQIDKENYLKN 493
L GA+VN + + L A + G +++K L GA ++ +
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA----CD 179
Query: 494 KE-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNV 546
A + + I LL ++ GA VNV
Sbjct: 180 NMGRNALIHALLSSDDSDVEA----ITHLL---------------------LDHGADVNV 214
Query: 547 SSERRGSALIYVAWKGYEEIVDLLLDN-GADVNFKSATGFTALHMACRFHSNDNIVRKLL 605
ER + LI K + +V LL+ ++N + G TAL +A I L
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK-IAELLC 273
Query: 606 HHGAYYDMKD 615
GA D D
Sbjct: 274 KRGASTDCGD 283
Score = 138 bits (351), Expect = 8e-37
Identities = 67/291 (23%), Positives = 110/291 (37%), Gaps = 48/291 (16%)
Query: 359 QIIKRIIDRTENINAEGDDM-ITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
+++++++ N+N + ++ TPL A + + L++ GA+ L
Sbjct: 19 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR---------- 68
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+ A +++++KL L GADVN+ A G + +K
Sbjct: 69 ---KKNGATPFLLAAI-AGSVKLLKLFLSKGADVNECDFY-GFTAFMEAAVYGKVKALKF 123
Query: 478 LQNYGAQIDKENYLKNKEAARIAHSTTEL-----EERKKINDLLKLNLDFLKNVRSNKYD 532
L GA ++ K + T L + ++ +L LD
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL---LD----------- 169
Query: 533 EVKKNIEDGACVNVSSERRGSALIYVAWKG----YEEIVDLLLDNGADVNFKSATGFTAL 588
E GA VN +ALI+ E I LLLD+GADVN + G T L
Sbjct: 170 ------EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223
Query: 589 HMACRFHSNDNIVRKLL-HHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+A +V++LL + D GKT L A K + I +LL
Sbjct: 224 ILAVEKKHLG-LVQRLLEQEHIEINDTD-SDGKTALLLAVELKLKKIAELL 272
Score = 131 bits (332), Expect = 3e-34
Identities = 66/269 (24%), Positives = 112/269 (41%), Gaps = 47/269 (17%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
L+ A ++ D+ + L++ GANVN E + + L A + +
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQE------------EEGGWTPLHNAV-QMSRED 53
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE---- 495
+V+LLL HGAD P +A +G +++K + GA +++ +
Sbjct: 54 IVELLLRHGADPVLRKKN-GATPFLLAAIAGSVKLLKLFLSKGADVNECD--FYGFTAFM 110
Query: 496 -AARIAH-STTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGS 553
AA + L K + N+R ++ ++ + GA +
Sbjct: 111 EAAVYGKVKALKF--------LYKRGAN--VNLRRKTKEDQERLRKGGA----------T 150
Query: 554 ALIYVAWKGYEEIVDLLLDN-GADVNFKSATGFTALHMACRFHSNDN---IVRKLLHHGA 609
AL+ A KG+ E++ +LLD GADVN G AL A + + I LL HGA
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210
Query: 610 YYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+++ + GKTPL A K+ ++ L
Sbjct: 211 DVNVRG-ERGKTPLILAVEKKHLGLVQRL 238
Score = 121 bits (305), Expect = 1e-30
Identities = 63/390 (16%), Positives = 127/390 (32%), Gaps = 121/390 (31%)
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDV 257
L AV +++ +V+ L++ A+ +N + +
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGAN----------------------------VNFQEEEG 38
Query: 258 SISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEY 317
+ LH A + IV++L++ D + + P A G + +
Sbjct: 39 GWT------PLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG--SVKLLKL 90
Query: 318 LLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDD 377
L + + ++N
Sbjct: 91 FLSKGA----------------------------------------------DVNECDFY 104
Query: 378 MITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNN 437
T + AA + +++ K+L ++GANVN ++ D +AL A + K +
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVN---LRRKTKEDQERLRKGGATALMDAAE-KGH 160
Query: 438 IEMVKLLLLH-GADVNDTSNKPKQKPLAVAIQSGDF----QIVKELQNYGAQIDKENYLK 492
+E++K+LL GADVN + + L A+ S D I L ++GA ++ +
Sbjct: 161 VEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG--E 217
Query: 493 NKEAA-RIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIE-DGACVNVSSER 550
+ +A V V++ +E + +N +
Sbjct: 218 RGKTPLILA-------------------------VEKKHLGLVQRLLEQEHIEINDTDSD 252
Query: 551 RGSALIYVAWKGYEEIVDLLLDNGADVNFK 580
+AL+ ++I +LL GA +
Sbjct: 253 GKTALLLAVELKLKKIAELLCKRGASTDCG 282
Score = 107 bits (269), Expect = 7e-26
Identities = 48/214 (22%), Positives = 75/214 (35%), Gaps = 42/214 (19%)
Query: 425 RSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQ 484
L A + ++++V+ LL GA+VN + PL A+Q IV+ L +GA
Sbjct: 6 NHLLIKAVQ-NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 485 IDKENYLKNKEAA-RIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGAC 543
KN +A + +K + GA
Sbjct: 65 PVLRK--KNGATPFLLA-------------------------AIAGSVKLLKLFLSKGAD 97
Query: 544 VNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFK----------SATGFTALHMACR 593
VN +A + A G + + L GA+VN + G TAL A
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Query: 594 FHSNDNIVRKLL-HHGAYYDMKDGKTGKTPLKHA 626
+ +++ LL GA + D G+ L HA
Sbjct: 158 KGHVE-VLKILLDEMGADVNACD-NMGRNALIHA 189
Score = 83.7 bits (208), Expect = 6e-18
Identities = 40/202 (19%), Positives = 73/202 (36%), Gaps = 37/202 (18%)
Query: 456 NKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAHSTTELEERKKINDL 515
L A+Q+ D +V++L GA ++ + A
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--------------- 46
Query: 516 LKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGA 575
V+ ++ D V+ + GA + + + + A G +++ L L GA
Sbjct: 47 ----------VQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96
Query: 576 DVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKD---------GKTGKTPLKHA 626
DVN GFTA A + ++ L GA +++ K G T L A
Sbjct: 97 DVNECDFYGFTAFMEAAVYGKVK-ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155
Query: 627 EAGKNRDIIDLLHLIDNLFASV 648
+ +++ + L+D + A V
Sbjct: 156 AEKGHVEVLKI--LLDEMGADV 175
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 167 bits (425), Expect = 4e-46
Identities = 58/414 (14%), Positives = 119/414 (28%), Gaps = 98/414 (23%)
Query: 80 DHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIV 139
NE G + + + + + LH G+ I
Sbjct: 51 KRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAIT 109
Query: 140 KFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDT--NEIISMLIENGANVREKMPFTDF 197
+ + + ++ T + +++N S + ++ I GA+V +
Sbjct: 110 EPITRESVNIIDPRHNR-TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD-CDEN 167
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDV 257
+PL AV+ + +V L+K AD
Sbjct: 168 TPLMLAVLARRRRLVAYLMKAGADPT---------------------------------- 193
Query: 258 SISDGDLNSLLHKACHVGNLQIVQMLVKRKF---DINAQNRYFLPPMFFAIGMGRK-HTH 313
I + S LH+A + ++ ++ DI +R + + +
Sbjct: 194 -IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA 252
Query: 314 VAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINA 373
A+ L+++ V+ D ++
Sbjct: 253 SAKLLVEKG-AKVD-------------------------------------YDGAARKDS 274
Query: 374 EGDDMITPLLFAAKHCDLQSAKYLI-QKGANVNLTETQKAFISDARSSDFCFRSALQYAC 432
E T L +AA+ ++ KYL+ +KG+N + D ++ + A
Sbjct: 275 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD-------------KQDEDGKTPIMLAA 321
Query: 433 KHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQID 486
+ IE+V L+ GA V +A + IV + +
Sbjct: 322 QE-GRIEVVMYLIQQGASVEAVDAT-DHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 155 bits (394), Expect = 7e-42
Identities = 65/414 (15%), Positives = 121/414 (29%), Gaps = 101/414 (24%)
Query: 80 DHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIV 139
+ ++ + + +L A G + N+ P GN +
Sbjct: 27 NRKNHQSITSSQHSLLEASYDG---------YIKRQRNELQHYSLYPNPQGYGNGNDFLG 77
Query: 140 KFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSP 199
F + L A S I + N+ + + +
Sbjct: 78 DFNHTNLQIPTEPEPESPIK-LHTEAAGSY------AITEPITRESVNIIDPR--HNRTV 128
Query: 200 LHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSI 259
LH+ + E LI + K + DV+
Sbjct: 129 LHWIASNSSAEKSEDLI-----------------------VHEAK----ECIAAGADVNA 161
Query: 260 SDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLL 319
D D N+ L A ++V L+K D N+ + A + Y+L
Sbjct: 162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR--DFGMMVYML 219
Query: 320 QQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMI 379
+ +I + +
Sbjct: 220 NSTKLKG-------------------------------------------DIEELDRNGM 236
Query: 380 TPLLFAAK---HCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKN 436
T L+ A + SAK L++KGA V+ + S + R+AL YA + +
Sbjct: 237 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA-----ARKDSEKYKGRTALHYAAQV-S 290
Query: 437 NIEMVKLLLLH-GADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
N+ +VK L+ G++ + + P+ +A Q G ++V L GA ++ +
Sbjct: 291 NMPIVKYLVGEKGSNKDKQDED-GKTPIMLAAQEGRIEVVMYLIQQGASVEAVD 343
Score = 137 bits (347), Expect = 2e-35
Identities = 45/252 (17%), Positives = 95/252 (37%), Gaps = 25/252 (9%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDH-------DVNEKLQDGRTALYMAILQGLYKMVTLLI 110
T+L ++ + E L+ DVN D T L +A+L ++V L+
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM 186
Query: 111 HHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKK---ADVRAKCSMMVTP-ILAVSAN 166
GA+ ++ + LH A + ++ ++L+ D+ +T ++
Sbjct: 187 KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE 246
Query: 167 MSEDSTDTNEIISMLIENGANVREKMPFTDFS-------PLHFAVVKKNLSVVELLIKCK 219
D +L+E GA V S LH+A N+ +V+ L+ K
Sbjct: 247 ----GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK 302
Query: 220 -ADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQ 278
++ + + + P + A + +++V +L + V D ++ A +
Sbjct: 303 GSNKDKQDEDGKTP-IMLAAQEGRIEVVM-YLIQQGASVEAVDATDHTARQLAQANNHHN 360
Query: 279 IVQMLVKRKFDI 290
IV + + + +
Sbjct: 361 IVDIFDRCRPER 372
Score = 137 bits (346), Expect = 2e-35
Identities = 60/447 (13%), Positives = 124/447 (27%), Gaps = 128/447 (28%)
Query: 199 PLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVS 258
L A + ++ + + + + + F ++ +
Sbjct: 40 SLLEASYDGYIKRQRNELQHYSLYPNP----------QGYGNGNDFLGD-FNHTNLQIPT 88
Query: 259 ISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYL 318
+ + LH G+ I + + + +I + + + +E L
Sbjct: 89 EPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPR-HNRTVLHWIASNS--SAEKSEDL 144
Query: 319 LQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDM 378
+ K I ++NA D
Sbjct: 145 I--------------------------------------VHEAKECIAAGADVNAMDCDE 166
Query: 379 ITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNI 438
TPL+ A + YL++ GA+ + RSAL A + +
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADPT-------------IYNKSERSALHQAAAN-RDF 212
Query: 439 EMVKLLLLH---GADVNDTSNKPKQKPLAVAIQSG---DFQIVKELQNYGAQIDKENYLK 492
M+ +L D+ + L + + K L GA++
Sbjct: 213 GMMVYMLNSTKLKGDIEELDRN-GMTALMIVAHNEGRDQVASAKLLVEKGAKV------- 264
Query: 493 NKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRG 552
+ + +K G
Sbjct: 265 --------------------------------DYDGAARKDSEKY--KGR---------- 280
Query: 553 SALIYVAWKGYEEIVDLLL-DNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
+AL Y A IV L+ + G++ + + G T + +A + + +V L+ GA
Sbjct: 281 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE-VVMYLIQQGASV 339
Query: 612 DMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+ D T T + A+A + +I+D+
Sbjct: 340 EAVD-ATDHTARQLAQANNHHNIVDIF 365
Score = 108 bits (272), Expect = 1e-25
Identities = 33/278 (11%), Positives = 68/278 (24%), Gaps = 74/278 (26%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
N + P + + + + L
Sbjct: 53 QRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPT-------------EPEPESPIKLH 99
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
+ + + + ++ D + + L + + ++L
Sbjct: 100 TEAA--GSYAITEPITRESVNIIDPRHN--RTVLHWIASNSSAEKSEDL----------- 144
Query: 490 YLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSE 549
I H E K+ I GA VN
Sbjct: 145 ---------IVH-------------------------------EAKECIAAGADVNAMDC 164
Query: 550 RRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHH-- 607
+ L+ +V L+ GAD + + +ALH A ++ +L+
Sbjct: 165 DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFG-MMVYMLNSTK 223
Query: 608 -GAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL-HLIDN 643
+ D + G T L + RD + L++
Sbjct: 224 LKGDIEELD-RNGMTALMIVAHNEGRDQVASAKLLVEK 260
Score = 76.9 bits (190), Expect = 4e-15
Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 49/222 (22%)
Query: 425 RSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQ 484
+ +L A + I+ + L H + P +G+ +
Sbjct: 38 QHSLLEAS-YDGYIKRQRNELQHYSLY----------PNPQGYGNGNDFLGDFNHTNLQI 86
Query: 485 IDKENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACV 544
+ L + Y + + +
Sbjct: 87 PTEPE--PESPIK-------------------------LHTEAAGSYAITEPITRESVNI 119
Query: 545 NVSSERRGSALIYVAWKGYEEIVDLLL--------DNGADVNFKSATGFTALHMACRFHS 596
R + L ++A E + L+ GADVN T L +A
Sbjct: 120 IDPRHNR-TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR 178
Query: 597 NDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+V L+ GA + + K+ ++ L A A ++ ++ +
Sbjct: 179 RR-LVAYLMKAGADPTIYN-KSERSALHQAAANRDFGMMVYM 218
Score = 54.2 bits (131), Expect = 6e-08
Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 12/103 (11%)
Query: 536 KNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFH 595
+N E + S +L+ ++ GY + N +
Sbjct: 22 ENEEKNRKNHQSITSSQHSLLEASYDGYIKRQ---------RNELQHYSLYPNPQGYG-N 71
Query: 596 SNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
ND + + + L H EA + I + +
Sbjct: 72 GNDFLGDFNHTNLQIPTEPE-PESPIKL-HTEAAGSYAITEPI 112
Score = 29.5 bits (67), Expect = 4.4
Identities = 9/68 (13%), Positives = 15/68 (22%), Gaps = 11/68 (16%)
Query: 572 DNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKN 631
+ + + +L A + R L H P N
Sbjct: 25 EKNRKNHQSITSSQHSLLEAS-YDGYIKRQRNELQHY----------SLYPNPQGYGNGN 73
Query: 632 RDIIDLLH 639
+ D H
Sbjct: 74 DFLGDFNH 81
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 162 bits (413), Expect = 1e-45
Identities = 54/319 (16%), Positives = 107/319 (33%), Gaps = 63/319 (19%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
+ ++ A + G + LI G VN +PLH AC G+ + VK LL A
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 149 VRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTD-FSPLHFAVVKK 207
V + TP+ + S + +++L+++GA+V+ + +D SP+H A +
Sbjct: 62 VNGVTADWHTPLFNACVSGSW------DCVNLLLQHGASVQPE---SDLASPIHEAARRG 112
Query: 208 NLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSL 267
++ V LI + + + P L+ A E+ V+ L DV+ +S
Sbjct: 113 HVECVNSLIAYGGNIDHKISHLGTP-LYLACENQQRACVK-KLLESGADVN-QGKGQDSP 169
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
LH + ++ +L+ D A+N P+ + +A+ L+++
Sbjct: 170 LHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVP----PESPLAQLFLEREG---- 221
Query: 328 LPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAK 387
+ +
Sbjct: 222 ------------------------------------------PPSLMQLCRLRIRKCFGI 239
Query: 388 HCDLQSAKYLIQKGANVNL 406
+ K ++ + L
Sbjct: 240 QQHHKITKLVLPEDLKQFL 258
Score = 143 bits (364), Expect = 6e-39
Identities = 63/280 (22%), Positives = 100/280 (35%), Gaps = 49/280 (17%)
Query: 360 IIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARS 419
++ +I + +N D ++PL A L K L++ GA VN +
Sbjct: 18 SLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN-----------GVT 66
Query: 420 SDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQ 479
+D+ + L AC + + V LLL HGA V S+ P+ A + G + V L
Sbjct: 67 ADW--HTPLFNAC-VSGSWDCVNLLLQHGASVQPESDL--ASPIHEAARRGHVECVNSLI 121
Query: 480 NYGAQIDKENYLKNKEAA-RIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNI 538
YG ID + + +A + + VKK +
Sbjct: 122 AYGGNIDHKI--SHLGTPLYLA-------------------------CENQQRACVKKLL 154
Query: 539 EDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSND 598
E GA VN + S L VA EE+ LL+D GAD K+A G + +
Sbjct: 155 ESGADVNQGKGQD-SPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPP---ES 210
Query: 599 NIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+ + L + K ++ I L+
Sbjct: 211 PLAQLFLEREGPPSLMQ-LCRLRIRKCFGIQQHHKITKLV 249
Score = 137 bits (347), Expect = 1e-36
Identities = 63/261 (24%), Positives = 94/261 (36%), Gaps = 51/261 (19%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
+P+ AA H S + LI +G VN+ S L AC ++
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADH-------------VSPLHEACLG-GHLS 50
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNK--EAA 497
VK+LL HGA VN + PL A SG + V L +GA + E+ L + EAA
Sbjct: 51 CVKILLKHGAQVNGVTAD-WHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAA 109
Query: 498 RIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIY 557
R H + + L I G ++ G+ L
Sbjct: 110 RRGH--------VECVNSL---------------------IAYGGNIDHKISHLGTPLYL 140
Query: 558 VAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGK 617
V LL++GADVN + + LH R +++ + L+ GA K+
Sbjct: 141 ACENQQRACVKKLLESGADVN-QGKGQDSPLHAVAR-TASEELACLLMDFGADTQAKN-A 197
Query: 618 TGKTPLKHAEAGKNRDIIDLL 638
GK P+ + L
Sbjct: 198 EGKRPV-EL-VPPESPLAQLF 216
Score = 134 bits (339), Expect = 2e-35
Identities = 48/344 (13%), Positives = 99/344 (28%), Gaps = 98/344 (28%)
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
+H+A G+ ++ L+ + + +N + P+ A G H + LL+ +
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG--HLSCVKILLKHGA---- 60
Query: 328 LPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAK 387
+N D TPL A
Sbjct: 61 ------------------------------------------QVNGVTADWHTPLFNACV 78
Query: 388 HCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLH 447
L+Q GA+V + S + A + + ++E V L+ +
Sbjct: 79 SGSWDCVNLLLQHGASVQ--------------PESDLASPIHEAAR-RGHVECVNSLIAY 123
Query: 448 GADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKN--KEAARIAHSTTE 505
G +++ + PL +A ++ VK+L GA +++ + AR A
Sbjct: 124 GGNIDHKISH-LGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTAS---- 178
Query: 506 LEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEE 565
+++ LL ++ GA + + V +
Sbjct: 179 ----EELACLL---------------------MDFGADTQAKNAEGKRPVELVPPES--P 211
Query: 566 IVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA 609
+ L L+ + + I + +L
Sbjct: 212 LAQLFLEREGPPSLMQLCRLRIRKCFGI-QQHHKITKLVLPEDL 254
Score = 124 bits (315), Expect = 3e-32
Identities = 54/367 (14%), Positives = 98/367 (26%), Gaps = 142/367 (38%)
Query: 123 GYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLI 182
++P+H A G++ ++ L+S+ V
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIIT----------------------------- 33
Query: 183 ENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNS 242
+ SPLH A + +LS V++L+K A N
Sbjct: 34 ADH-----------VSPLHEACLGGHLSCVKILLKHGAQVN------------------- 63
Query: 243 VKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMF 302
D ++ L AC G+ V +L++ + ++ P+
Sbjct: 64 ----------------GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIH 106
Query: 303 FAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIK 362
A G H L+
Sbjct: 107 EAARRG--HVECVNSLIAYGG--------------------------------------- 125
Query: 363 RIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDF 422
NI+ + + TPL A ++ K L++ GA+VN + Q
Sbjct: 126 -------NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQ------------ 166
Query: 423 CFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYG 482
S L + E+ LL+ GAD N ++P+ + + +
Sbjct: 167 --DSPLHAVA-RTASEELACLLMDFGADTQ-AKNAEGKRPVELVPPESP--LAQLFLERE 220
Query: 483 AQIDKEN 489
Sbjct: 221 GPPSLMQ 227
Score = 123 bits (311), Expect = 1e-31
Identities = 60/345 (17%), Positives = 102/345 (29%), Gaps = 100/345 (28%)
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
+ A + + S+ + V+I D S LH+AC G+L V++L+K +N
Sbjct: 7 MHEAAIHGHQLSLRNLI-SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 65
Query: 294 NRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQ 353
+ P+F A G LLQ +
Sbjct: 66 TADWHTPLFNACVSG--SWDCVNLLLQHGA------------------------------ 93
Query: 354 IKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAF 413
++ E D +P+ AA+ ++ LI G N++
Sbjct: 94 ----------------SVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNID-------- 128
Query: 414 ISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQ 473
+ L AC VK LL GADVN + PL ++ +
Sbjct: 129 -----HKISHLGTPLYLAC-ENQQRACVKKLLESGADVNQGKGQ--DSPLHAVARTASEE 180
Query: 474 IVKELQNYGAQIDKENYLKNKEAAR---IAHSTTELEERKKINDLLKLNLDFLKNVRSNK 530
+ L ++GA KN E R + + L + L
Sbjct: 181 LACLLMDFGADTQA----KNAEGKRPVELVPPESPLAQ------LF-------------- 216
Query: 531 YDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGA 575
+E ++ R + + +I L+L
Sbjct: 217 -------LEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDL 254
Score = 115 bits (290), Expect = 7e-29
Identities = 49/219 (22%), Positives = 80/219 (36%), Gaps = 42/219 (19%)
Query: 425 RSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQ 484
S + A H + ++ L+ G VN + PL A G VK L +GAQ
Sbjct: 4 WSPMHEAAIH-GHQLSLRNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 485 IDKENYLKNKE-----AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIE 539
++ + A +LL ++
Sbjct: 62 VNGVT--ADWHTPLFNACVSGS--------WDCVNLL---------------------LQ 90
Query: 540 DGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDN 599
GA V S+ S + A +G+ E V+ L+ G +++ K + T L++AC
Sbjct: 91 HGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA- 148
Query: 600 IVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
V+KLL GA D+ GK +PL + ++ LL
Sbjct: 149 CVKKLLESGA--DVNQGKGQDSPLHAVARTASEELACLL 185
Score = 45.9 bits (110), Expect = 2e-05
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 583 TGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+ ++ +H A H + +R L+ G ++ +PL A G + + +L
Sbjct: 2 SDWSPMHEAA-IHGHQLSLRNLISQGWAVNIIT-ADHVSPLHEACLGGHLSCVKIL 55
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 159 bits (404), Expect = 3e-44
Identities = 45/240 (18%), Positives = 95/240 (39%), Gaps = 24/240 (10%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
+ A+ DN +R V LL+ G N + L+ A K+V +L+ G + +
Sbjct: 33 SASYYAIADNNVRLVCTLLNAGA-LKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDS 89
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKC-SMMVTP-ILAVSANMSEDSTDTN 175
D+KG T L+ A GN VK + K + + T AV N
Sbjct: 90 QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND-------V 142
Query: 176 EIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLF 235
I+S + + + S +H + ++ ++ LL+ TN + P +
Sbjct: 143 SIVSYFLSEIPSTFDL--AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIK 200
Query: 236 FAIESNSVKIVEAFLNSKNFDVSISDG-DLNSLLHKACHVGNLQIVQMLVKRKFDINAQN 294
AI++ +++++ L ++ S + + + +I +M++++ + + +
Sbjct: 201 LAIDNKDIEMLQ-AL--------FKYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDS 251
Score = 156 bits (397), Expect = 3e-43
Identities = 44/282 (15%), Positives = 102/282 (36%), Gaps = 26/282 (9%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
+ L W +K +++ LS D + G +A Y AI ++V L++ GA
Sbjct: 2 MDLSRINTWKSK--QLKSFLS--SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNE 176
N + PLH A L + IVK LL D T + + + +
Sbjct: 58 NLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNM------Q 109
Query: 177 IISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFF 236
+ + ++ + + + AV+ ++S+V + + + +
Sbjct: 110 TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-TFDLAILLSC-IHI 167
Query: 237 AIESNSVKIVEAFLNSKNFDVSISDGDLNS-LLHKACHVGNLQIVQMLVKRKFDINAQNR 295
I++ V ++ L + ++ L + A +++++Q L K +I + N
Sbjct: 168 TIKNGHVDMMI-LLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL 226
Query: 296 YFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLL 337
+ + +A+ ++++ + +L +
Sbjct: 227 E-------NVLLD--DAEIAKMIIEKH-VEYKSDSYTKDLDI 258
Score = 141 bits (359), Expect = 6e-38
Identities = 51/320 (15%), Positives = 97/320 (30%), Gaps = 76/320 (23%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADV 149
G + K + + + D G++ + A N +V LL+ A
Sbjct: 1 GMDLSRINT--WKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Query: 150 RAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTD---FSPLHFAVVK 206
+ P+ + +I+ +L+ +G + + D + L++AV
Sbjct: 58 NLLENE--FPLHQAATLEDT------KIVKILLFSGLDDSQF----DDKGNTALYYAVDS 105
Query: 207 KNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNS 266
N+ V+L +K K + + A+ N V IV FL+ + L S
Sbjct: 106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI--PSTFDLAILLS 163
Query: 267 LLHKACHVGNLQIVQMLVKRKFDINAQNRY-FLPPMFFAIGMGRKHTHVAEYLLQQDSIN 325
+H G++ ++ +L+ N N F+P + AI + + L + D
Sbjct: 164 CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK--DIEMLQALFKYDI-- 219
Query: 326 VNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFA 385
NI + L
Sbjct: 220 --------------------------------------------NIY-------SANLEN 228
Query: 386 AKHCDLQSAKYLIQKGANVN 405
D + AK +I+K
Sbjct: 229 VLLDDAEIAKMIIEKHVEYK 248
Score = 127 bits (321), Expect = 9e-33
Identities = 45/360 (12%), Positives = 104/360 (28%), Gaps = 99/360 (27%)
Query: 237 AIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
I + K +++FL+SK D +D +S + A N+++V L+ N
Sbjct: 6 RINTWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE 63
Query: 297 FLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKR 356
F P+ A + T + + LL
Sbjct: 64 F--PLHQAATLE--DTKIVKILLFSGL--------------------------------- 86
Query: 357 LDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISD 416
+ + D T L +A ++Q+ K ++K +
Sbjct: 87 -------------DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM----------- 122
Query: 417 ARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVK 476
++++ +A N++ +V L D + + + I++G ++
Sbjct: 123 FYGKTG-WKTSFYHAV-MLNDVSIVSYFLSEIPSTFDLAI--LLSCIHITIKNGHVDMMI 178
Query: 477 ELQNYGAQIDKENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKK 536
L +Y + N L ++A + + + ++
Sbjct: 179 LLLDYMTSTNTNNSLLFIPDIKLA-------------------------IDNKDIEMLQA 213
Query: 537 NIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHS 596
+ + SA + EI ++++ + S T + +
Sbjct: 214 LFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDE 266
Score = 116 bits (293), Expect = 4e-29
Identities = 39/289 (13%), Positives = 77/289 (26%), Gaps = 73/289 (25%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
+ + +A +++ L+ GA NL E + L
Sbjct: 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE---------------FPLH 67
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
A + ++VK+LL G D + +K L A+ SG+ Q VK ++
Sbjct: 68 QAATL-EDTKIVKILLFSGLDDSQFDDK-GNTALYYAVDSGNMQTVKLFVKKNWRLMF-- 123
Query: 490 YLKNKEAARIA-HSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSS 548
K + + + V N V + +
Sbjct: 124 --YGKTGWKTSFYHA----------------------VMLNDVSIVSYFLSEIP-STFDL 158
Query: 549 ERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT-ALHMACR-------------- 593
S + G+ +++ LLLD N ++ F + +A
Sbjct: 159 AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218
Query: 594 -----------FHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKN 631
+ I + ++ Y T + +
Sbjct: 219 INIYSANLENVLLDDAEIAKMIIEKHVEYKSDS-YTKDLDI-VKNNKLD 265
Score = 107 bits (271), Expect = 4e-26
Identities = 35/328 (10%), Positives = 91/328 (27%), Gaps = 107/328 (32%)
Query: 175 NEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLL 234
++ + + + + + S ++A+ N+ +V L+ A N
Sbjct: 12 SKQLKSFL-SSKDTFKADVH-GHSASYYAIADNNVRLVCTLLNAGALKN----------- 58
Query: 235 FFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQN 294
+ + + LH+A + + +IV++L+ D + +
Sbjct: 59 ------------------------LLENE--FPLHQAATLEDTKIVKILLFSGLDDSQFD 92
Query: 295 RYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQI 354
+++A+ G + + ++++
Sbjct: 93 DKGNTALYYAVDSG--NMQTVKLFVKKNW------------------------------- 119
Query: 355 KRLDQIIKRIIDRTENINAEGDD-MITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAF 413
+ G T A D+ Y + + +
Sbjct: 120 ---------------RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-------- 156
Query: 414 ISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQ 473
S + +++M+ LLL + N ++ + +AI + D +
Sbjct: 157 ------DLAILLSCIHITI-KNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIE 209
Query: 474 IVKELQNYGAQIDKENYLKNKEAARIAH 501
+++ L Y I N E +
Sbjct: 210 MLQALFKYDINIYS----ANLENVLLDD 233
Score = 105 bits (265), Expect = 2e-25
Identities = 40/257 (15%), Positives = 69/257 (26%), Gaps = 51/257 (19%)
Query: 385 AAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLL 444
+ K + + +D SA YA NN+ +V L
Sbjct: 6 RINTWKSKQLKSFLS-SKDTF-------------KADVHGHSASYYAI-ADNNVRLVCTL 50
Query: 445 LLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAA-RIAHST 503
L GA N N+ PL A D +IVK L G + + A A
Sbjct: 51 LNAGALKNLLENEF---PLHQAATLEDTKIVKILLFSGLDDSQFD--DKGNTALYYA--- 102
Query: 504 TELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSER-RGSALIYVAWKG 562
V S VK ++ + + ++ +
Sbjct: 103 ----------------------VDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN 140
Query: 563 YEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTP 622
IV L A + +H+ + D ++ LL + + + P
Sbjct: 141 DVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVD-MMILLLDYMTSTNTNN-SLLFIP 197
Query: 623 LKHAEAGKNR-DIIDLL 638
+++ L
Sbjct: 198 DIKLAIDNKDIEMLQAL 214
Score = 77.2 bits (191), Expect = 1e-15
Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 5/116 (4%)
Query: 523 LKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSA 582
L + + K ++K + + SA Y +V LL+ GA N
Sbjct: 4 LSRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL-- 60
Query: 583 TGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
LH A + IV+ LL G D G T L +A N + L
Sbjct: 61 ENEFPLHQAA-TLEDTKIVKILLFSGLDDSQFD-DKGNTALYYAVDSGNMQTVKLF 114
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 156 bits (397), Expect = 1e-43
Identities = 54/243 (22%), Positives = 98/243 (40%), Gaps = 16/243 (6%)
Query: 82 DVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKF 141
+ + Q+ R+ L+ A G + +L+ GAN++ E TPL A + VK+
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 142 LLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGA---NVREKMPFTDFS 198
L+ A V K + T + + E++ L+ NG N ++ +T
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHY------EVVQYLLSNGQMDVNCQDDGGWT--- 113
Query: 199 PLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVS 258
P+ +A K++ +V+LL+ +D N+ L +A S V I E L + D+
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGSDINIRDNEENIC-LHWAAFSGCVDIAE-ILLAAKCDLH 171
Query: 259 ISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYL 318
+ +S LH A V + + R D+ +N+ P+ A A +
Sbjct: 172 AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNS--QVWSALQM 229
Query: 319 LQQ 321
+
Sbjct: 230 SKA 232
Score = 136 bits (344), Expect = 2e-36
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 13/168 (7%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L A V++LLS G DVN + G T + A +V LL+ G+++N
Sbjct: 79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN 138
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEI 177
RD + LH A + G +I + LL+ K D+ A +P+ + +
Sbjct: 139 IRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRY------DC 192
Query: 178 ISMLIENGANVREKMPFTD---FSPLHFAVVKKNLSVVELLIKCKADT 222
+ + + ++V K + +PL A + + + K D+
Sbjct: 193 VVLFLSRDSDVTLK----NKEGETPLQCASLNSQVWSALQMSKALQDS 236
Score = 134 bits (340), Expect = 8e-36
Identities = 58/284 (20%), Positives = 108/284 (38%), Gaps = 60/284 (21%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
N E + +PL AA+ + L+Q GAN++ + R+ L
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-------------TCSEDQRTPLM 49
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQ-IDKE 488
A ++ N++E VK L+ GA V+ + L +A + G +++V+ L + G ++
Sbjct: 50 EAAEN-NHLEAVKYLIKAGALVDPKDAE-GSTCLHLAAKKGHYEVVQYLLSNGQMDVNC- 106
Query: 489 NYLKNKE-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDG 541
++ A H + LL + G
Sbjct: 107 ---QDDGGWTPMIWATEYKH--------VDLVKLL---------------------LSKG 134
Query: 542 ACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIV 601
+ +N+ L + A+ G +I ++LL D++ + G + LH+A R + D V
Sbjct: 135 SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD-CV 193
Query: 602 RKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL--HLIDN 643
L + +K+ K G+TPL+ A + L D+
Sbjct: 194 VLFLSRDSDVTLKN-KEGETPLQCASLNSQVWSALQMSKALQDS 236
Score = 130 bits (330), Expect = 2e-34
Identities = 61/291 (20%), Positives = 103/291 (35%), Gaps = 58/291 (19%)
Query: 114 ANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTD 173
N + +PLH A G+ +I L+ A++ TP++ + N
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHL---- 57
Query: 174 TNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKA-DTNLIVKVNQEP 232
E + LI+ GA V K + LH A K + VV+ L+ D N P
Sbjct: 58 --EAVKYLIKAGALVDPKDAE-GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP 114
Query: 233 LLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINA 292
+ +A E V +V+ L SK D++I D + N LH A G + I ++L+ K D++A
Sbjct: 115 -MIWATEYKHVDLVK-LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA 172
Query: 293 QNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQT 352
N + P+ A L +DS
Sbjct: 173 VNIHGDSPLHIAAREN--RYDCVVLFLSRDS----------------------------- 201
Query: 353 QIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGAN 403
++ + + TPL A+ + + SA + + +
Sbjct: 202 -----------------DVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235
Score = 119 bits (300), Expect = 2e-30
Identities = 51/252 (20%), Positives = 89/252 (35%), Gaps = 43/252 (17%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
I ++ NI+ +D TPL+ AA++ L++ KYLI+ GA V+
Sbjct: 25 DICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD------------- 71
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
D + L A K K + E+V+ LL +G + + P+ A + +VK L
Sbjct: 72 PKDAEGSTCLHLAAK-KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 479 QNYGAQIDKENYLKNKEAA-RIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKN 537
+ G+ I+ + + A S D +
Sbjct: 131 LSKGSDINIRD--NEENICLHWA-------------------------AFSGCVDIAEIL 163
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+ ++ + S L A + + V L L +DV K+ G T L A +S
Sbjct: 164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL-NSQ 222
Query: 598 DNIVRKLLHHGA 609
++
Sbjct: 223 VWSALQMSKALQ 234
Score = 103 bits (260), Expect = 4e-25
Identities = 53/325 (16%), Positives = 103/325 (31%), Gaps = 92/325 (28%)
Query: 254 NFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTH 313
+ + + + S LH A G++ I MLV+ +I+ + P+ A H
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENN--HLE 58
Query: 314 VAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINA 373
+YL++ + ++
Sbjct: 59 AVKYLIKAGA----------------------------------------------LVDP 72
Query: 374 EGDDMITPLLFAAKHCDLQSAKYLIQKGA-NVNLTETQKAFISDARSSDFCFRSALQYAC 432
+ + T L AAK + +YL+ G +VN D + + +A
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN-------------CQDDGGWTPMIWAT 119
Query: 433 KHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLK 492
++ ++++VKLLL G+D+N N+ + L A SG I + L + N
Sbjct: 120 EY-KHVDLVKLLLSKGSDINIRDNE-ENICLHWAAFSGCVDIAEILLAAKCDLHAVN--I 175
Query: 493 NKEAA-RIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERR 551
+ ++ IA R N+YD V + + V + ++
Sbjct: 176 HGDSPLHIA-------------------------ARENRYDCVVLFLSRDSDVTLKNKEG 210
Query: 552 GSALIYVAWKGYEEIVDLLLDNGAD 576
+ L + + D
Sbjct: 211 ETPLQCASLNSQVWSALQMSKALQD 235
Score = 101 bits (255), Expect = 2e-24
Identities = 41/256 (16%), Positives = 86/256 (33%), Gaps = 63/256 (24%)
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
L A E+ V I L ++ D + L +A +L+ V+ L+K ++ +
Sbjct: 15 LHAAAEAGHVDICH-MLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73
Query: 294 NRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQ 353
+ + A G H V +YLL ++
Sbjct: 74 DAEGSTCLHLAAKKG--HYEVVQYLLSNGQMD---------------------------- 103
Query: 354 IKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAF 413
+N + D TP+++A ++ + K L+ KG+++N
Sbjct: 104 -----------------VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-------- 138
Query: 414 ISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQ 473
D L +A +++ ++LL D++ + PL +A + +
Sbjct: 139 -----IRDNEENICLHWAAFS-GCVDIAEILLAAKCDLHAVNIH-GDSPLHIAARENRYD 191
Query: 474 IVKELQNYGAQIDKEN 489
V + + + +N
Sbjct: 192 CVVLFLSRDSDVTLKN 207
Score = 49.7 bits (120), Expect = 9e-07
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 575 ADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDI 634
+ + + LH A D I L+ GA D + +TPL A + +
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVD-ICHMLVQAGANIDTCS-EDQRTPLMEAAENNHLEA 59
Query: 635 IDLL 638
+ L
Sbjct: 60 VKYL 63
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 156 bits (396), Expect = 2e-43
Identities = 52/243 (21%), Positives = 100/243 (41%), Gaps = 18/243 (7%)
Query: 83 VNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFL 142
+ + A G+Y+ L+ G +V D++ T LH A ++VK+
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 143 LSKKADVRAKCS-MMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTD---FS 198
+SK A V + TP+ + ++ L++ GA+ D S
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHL------SMVVQLMKYGADPSLI----DGEGCS 111
Query: 199 PLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVS 258
+H A + S+V LI D +++ + PL++ A ++SV L + N V+
Sbjct: 112 CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR-LLLTFNVSVN 170
Query: 259 ISD-GDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEY 317
+ D N+ LH A GN ++ +L++ +++AQN + A + + +
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK--NVWMINH 228
Query: 318 LLQ 320
L +
Sbjct: 229 LQE 231
Score = 149 bits (380), Expect = 3e-41
Identities = 48/242 (19%), Positives = 88/242 (36%), Gaps = 17/242 (7%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
+ A L+ G DV + ++ T L+ A + +V I GA V+
Sbjct: 11 WDIVKATQYGIYERCRELVEAGY-DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD 69
Query: 118 DRD-EKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNE 176
+ TPLH A G+ ++V L+ AD + I +
Sbjct: 70 QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT------S 123
Query: 177 IISMLIENGANVREKMPFTD---FSPLHFAVVKKN-LSVVELLIKCKADTNLIVKVNQEP 232
I++ LI G +V D +PL +A + + + LL+ NL K ++
Sbjct: 124 IVAYLIAKGQDVDMM----DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNT 179
Query: 233 LLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINA 292
L +A+ + + ++ L +V + S L A N+ ++ L + +
Sbjct: 180 ALHWAVLAGNTTVIS-LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238
Query: 293 QN 294
N
Sbjct: 239 DN 240
Score = 142 bits (362), Expect = 7e-39
Identities = 58/278 (20%), Positives = 99/278 (35%), Gaps = 58/278 (20%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
++ D ++ A ++ + + L++ G +V D + L
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-------------QPDKENVTLLH 47
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
+A N I++VK + GA V+ PL A + G +V +L YGA
Sbjct: 48 WAA-INNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL-- 104
Query: 490 YLKNKE-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGA 542
+ E AA+ H I L I G
Sbjct: 105 --IDGEGCSCIHLAAQFGH--------TSIVAYL---------------------IAKGQ 133
Query: 543 CVNVSSERRGSALIYVAWKGYE-EIVDLLLDNGADVNFK-SATGFTALHMACRFHSNDNI 600
V++ + + L++ A++ + + LLL VN TALH A N +
Sbjct: 134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL-AGNTTV 192
Query: 601 VRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+ LL GA D ++ G++ L A+ KN +I+ L
Sbjct: 193 ISLLLEAGANVDAQN-IKGESALDLAKQRKNVWMINHL 229
Score = 133 bits (338), Expect = 1e-35
Identities = 51/293 (17%), Positives = 102/293 (34%), Gaps = 58/293 (19%)
Query: 115 NVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDT 174
++ D+ + A G + L+ DVR VT + + N
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRI----- 55
Query: 175 NEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLL 234
+++ I GA V + + +PLH+A + +LS+V L+K AD +LI +
Sbjct: 56 -DLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSC-I 113
Query: 235 FFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGN-LQIVQMLVKRKFDINAQ 293
A + IV +L +K DV + D + + L A + + + ++L+ +N
Sbjct: 114 HLAAQFGHTSIVA-YLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172
Query: 294 NRYF-LPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQT 352
++Y + +A+ G +T V LL+ +
Sbjct: 173 DKYHKNTALHWAVLAG--NTTVISLLLEAGA----------------------------- 201
Query: 353 QIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVN 405
N++A+ + L A + ++ +L +
Sbjct: 202 -----------------NVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237
Score = 126 bits (320), Expect = 3e-33
Identities = 51/257 (19%), Positives = 97/257 (37%), Gaps = 51/257 (19%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+ + +++ ++ + +T L +AA + + KY I KGA V+
Sbjct: 23 ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD-----------QL 71
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
D + L +A + + ++ MV L+ +GAD + + + +A Q G IV L
Sbjct: 72 GGDL-NSTPLHWATR-QGHLSMVVQLMKYGADPSLIDGE-GCSCIHLAAQFGHTSIVAYL 128
Query: 479 QNYGAQIDKENYLKNKE-----AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDE 533
G +D + +N AA HS LL
Sbjct: 129 IAKGQDVDMMD--QNGMTPLMWAAYRTHS-------VDPTRLL----------------- 162
Query: 534 VKKNIEDGACVNVSSERRGS-ALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMAC 592
+ VN+ + + AL + G ++ LLL+ GA+V+ ++ G +AL +A
Sbjct: 163 ----LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218
Query: 593 RFHSNDNIVRKLLHHGA 609
+ + ++ L
Sbjct: 219 QRKNVW-MINHLQEARQ 234
Score = 105 bits (264), Expect = 1e-25
Identities = 39/257 (15%), Positives = 81/257 (31%), Gaps = 63/257 (24%)
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
+ A + + + +DV D + +LLH A + +V+ + + ++
Sbjct: 13 IVKATQYGIYERCRELV-EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL 71
Query: 294 NRYF-LPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQT 352
P+ +A G H + L++ +
Sbjct: 72 GGDLNSTPLHWATRQG--HLSMVVQLMKYGA----------------------------- 100
Query: 353 QIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKA 412
+ + + + + AA+ YLI KG +V+
Sbjct: 101 -----------------DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD------- 136
Query: 413 FISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDF 472
D + L +A ++++ +LLL VN K L A+ +G+
Sbjct: 137 ------MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT 190
Query: 473 QIVKELQNYGAQIDKEN 489
++ L GA +D +N
Sbjct: 191 TVISLLLEAGANVDAQN 207
Score = 104 bits (262), Expect = 2e-25
Identities = 42/316 (13%), Positives = 92/316 (29%), Gaps = 92/316 (29%)
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
+ KA G + + LV+ +D+ ++ + + +A + +Y + + +
Sbjct: 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINN--RIDLVKYYISKGA---- 66
Query: 328 LPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDM-ITPLLFAA 386
++ G D+ TPL +A
Sbjct: 67 ------------------------------------------IVDQLGGDLNSTPLHWAT 84
Query: 387 KHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLL 446
+ L L++ GA+ +L + + S + A + + +V L+
Sbjct: 85 RQGHLSMVVQLMKYGADPSLIDGEG-------------CSCIHLAAQ-FGHTSIVAYLIA 130
Query: 447 HGADVNDTSNKPKQKPLAVAIQSG-DFQIVKELQNYGAQIDKENYLKNKEAARIA-HSTT 504
G DV+ PL A + L + ++ +K A H
Sbjct: 131 KGQDVDMMDQN-GMTPLMWAAYRTHSVDPTRLLLTFNVSVNL----GDKYHKNTALHWA- 184
Query: 505 ELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYE 564
V + + +E GA V+ + + SAL +
Sbjct: 185 ---------------------VLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNV 223
Query: 565 EIVDLLLDNGADVNFK 580
+++ L + +
Sbjct: 224 WMINHLQEARQAKGYD 239
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 157 bits (400), Expect = 2e-43
Identities = 55/379 (14%), Positives = 110/379 (29%), Gaps = 86/379 (22%)
Query: 83 VNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFL 142
+ + + G + + + + G AC G+ V L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59
Query: 143 LSKKADVRAKCSMMVTP-ILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTD---FS 198
L + AD+ +T A + +++ L+ENGAN+ + D +
Sbjct: 60 LERGADINYANVDGLTALHQACIDD-------NVDMVKFLVENGANINQP----DNEGWI 108
Query: 199 PLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVS 258
PLH A L + E LI A + P L A E ++++ +N + D+
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP-LDIAEEEAMEELLQNEVNRQGVDI- 166
Query: 259 ISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYL 318
+ + + Q L + + + A G +T V + L
Sbjct: 167 ------EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG--YTEVLKLL 218
Query: 319 LQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDM 378
+Q ++N + D
Sbjct: 219 IQARY----------------------------------------------DVNIKDYDG 232
Query: 379 ITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNI 438
TPL AA ++ + L++ ++ A + ++A A +
Sbjct: 233 WTPLHAAAHWGKEEACRILVENLCDME-----------AVNKV--GQTAFDVADE-DILG 278
Query: 439 EMVKLLLLHGADVNDTSNK 457
+ +L ++ K
Sbjct: 279 YLEELQKKQNLLHSEKREK 297
Score = 151 bits (384), Expect = 3e-41
Identities = 56/357 (15%), Positives = 112/357 (31%), Gaps = 71/357 (19%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
W ++E + K DG L A G + V L+ GA++N
Sbjct: 10 RNEQLKRWIGSETDLEPPVVKRK-KTKVKFDDGAVFLA-ACSSGDTEEVLRLLERGADIN 67
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEI 177
+ G T LH AC N ++VKFL+ A++ + P+ A ++ +I
Sbjct: 68 YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL------DI 121
Query: 178 ISMLIENGANVREKMPFTD---FSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLL 234
LI GA+V + +PL A + +++ + + V+ E
Sbjct: 122 AEYLISQGAHVGAV----NSEGDTPLDIAEEEAMEELLQNEVNRQ-------GVDIEAAR 170
Query: 235 FFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQN 294
+ +LNS + + + LH A G +++++L++ ++D+N ++
Sbjct: 171 KEEERIMLRDARQ-WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD 229
Query: 295 RYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQI 354
P+ A G L++
Sbjct: 230 YDGWTPLHAAAHWG--KEEACRILVENLC------------------------------- 256
Query: 355 KRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQK 411
++ A T A + + ++ + +K
Sbjct: 257 ---------------DMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREKK 298
Score = 143 bits (363), Expect = 3e-38
Identities = 68/309 (22%), Positives = 122/309 (39%), Gaps = 34/309 (11%)
Query: 341 MSLKDPKVMSQTQIKRL---DQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYL 397
M + D K Q+KR + ++ + + + + DD L A D + L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59
Query: 398 IQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNK 457
+++GA++N ++ +AL AC +N++MVK L+ +GA++N N+
Sbjct: 60 LERGADIN-------------YANVDGLTALHQAC-IDDNVDMVKFLVENGANINQPDNE 105
Query: 458 PKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE-----AARIAH-STTELEERKK 511
PL A G I + L + GA + N + A A + E ++
Sbjct: 106 -GWIPLHAAASCGYLDIAEYLISQGAHVGAVN--SEGDTPLDIAEEEAMEELLQNEVNRQ 162
Query: 512 INDLLKLNLDFLKNVRSNKYDEVKKN-IEDGACVNVSSERRGSALIYVAWKGYEEIVDLL 570
D+ K + ++ ++ G+AL A KGY E++ LL
Sbjct: 163 GVDIEAA----RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218
Query: 571 LDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGK 630
+ DVN K G+T LH A + + R L+ + + + K G+T A+
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEE-ACRILVENLCDMEAVN-KVGQTAFDVADEDI 276
Query: 631 NRDIIDLLH 639
+ +L
Sbjct: 277 LGYLEELQK 285
Score = 121 bits (307), Expect = 8e-31
Identities = 51/385 (13%), Positives = 108/385 (28%), Gaps = 110/385 (28%)
Query: 259 ISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYL 318
++D +G+ ++ V ++ + + T L
Sbjct: 3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACS---SGDTEEVLRL 59
Query: 319 LQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDM 378
L++ + +IN D
Sbjct: 60 LERGA----------------------------------------------DINYANVDG 73
Query: 379 ITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNI 438
+T L A ++ K+L++ GAN+N ++ L A +
Sbjct: 74 LTALHQACIDDNVDMVKFLVENGANIN-----------QPDNEG--WIPLHAAAS-CGYL 119
Query: 439 EMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAAR 498
++ + L+ GA V +++ PL +A + ++++ N + EAAR
Sbjct: 120 DIAEYLISQGAHVGAVNSE-GDTPLDIAEEEAMEELLQNEVNRQG--------VDIEAAR 170
Query: 499 IAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKN--------------------- 537
+ D + + S ++V+
Sbjct: 171 KEEER-------------IMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL 217
Query: 538 -IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHS 596
I+ VN+ + L A G EE +L++N D+ + G TA +A
Sbjct: 218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277
Query: 597 NDNIVRKLLHHGAYYDMKDGKTGKT 621
+ + + K+
Sbjct: 278 GY-LEELQKKQNL--LHSEKREKKS 299
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 156 bits (397), Expect = 4e-43
Identities = 54/261 (20%), Positives = 103/261 (39%), Gaps = 21/261 (8%)
Query: 71 EVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLA 130
L + + + ++ A + G + LI G VN +PLH A
Sbjct: 42 FPGIRLLSNPLMGDAV--SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEA 99
Query: 131 CYLGNKNIVKFLLSKKADVRAKCSMMVTP-ILAVSANMSEDSTDTNEIISMLIENGANVR 189
C G+ + VK LL A V + TP A + + +++L+++GA+V+
Sbjct: 100 CLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW-------DCVNLLLQHGASVQ 152
Query: 190 EKMPFTD-FSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEA 248
+ +D SP+H A + ++ V LI + + + P L+ A E+ V+
Sbjct: 153 PE---SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTP-LYLACENQQRACVK- 207
Query: 249 FLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMG 308
L DV+ +S LH + ++ +L+ D A+N P+
Sbjct: 208 KLLESGADVNQGK-GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPES 266
Query: 309 RKHTHVAEYLLQQDSINVNLP 329
+A+ L+++ ++ P
Sbjct: 267 ----PLAQLFLEREGASLPKP 283
Score = 149 bits (379), Expect = 1e-40
Identities = 65/429 (15%), Positives = 120/429 (27%), Gaps = 152/429 (35%)
Query: 63 AVWDNKIREVEFLLSTG----DHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVND 118
+ L+ G D + DG G+ L+ + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDA 56
Query: 119 RDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEII 178
++P+H A G++ ++ L+S+ V + + +
Sbjct: 57 VS--DWSPMHEAAIHGHQLSLRNLISQGWAV--------------------NIITADHV- 93
Query: 179 SMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAI 238
SPLH A + +LS V++L+K A N
Sbjct: 94 -------------------SPLHEACLGGHLSCVKILLKHGAQVN--------------- 119
Query: 239 ESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFL 298
D ++ L AC G+ V +L++ + ++
Sbjct: 120 --------------------GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA- 158
Query: 299 PPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLD 358
P+ A G H L+
Sbjct: 159 SPIHEAARRG--HVECVNSLIAYGG----------------------------------- 181
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
NI+ + + TPL A ++ K L++ GA+VN + Q
Sbjct: 182 -----------NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQ-------- 222
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
S L + + E+ LL+ GAD N ++P+ + + L
Sbjct: 223 ------DSPLHAVVRT-ASEELACLLMDFGADTQ-AKNAEGKRPVELVPPESPLAQLF-L 273
Query: 479 QNYGAQIDK 487
+ GA + K
Sbjct: 274 EREGASLPK 282
Score = 139 bits (354), Expect = 3e-37
Identities = 69/331 (20%), Positives = 112/331 (33%), Gaps = 67/331 (20%)
Query: 311 HTHVAEYLLQQDSINVNLP-IKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTE 369
H H + L+ + ++ K+ + +D I +
Sbjct: 7 HHHHSSGLVPR-GSHMASMDGKQGGMDGSKPAGPRD---------------FPGIRLLSN 50
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
+ + +P+ AA H S + LI +G VN+ S L
Sbjct: 51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH-------------VSPLH 97
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
AC ++ VK+LL HGA VN + PL A SG + V L +GA + E+
Sbjct: 98 EAC-LGGHLSCVKILLKHGAQVNGVTAD-WHTPLFNACVSGSWDCVNLLLQHGASVQPES 155
Query: 490 YLKNK--EAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVS 547
L + EAAR H + + L I G ++
Sbjct: 156 DLASPIHEAARRGH--------VECVNSL---------------------IAYGGNIDHK 186
Query: 548 SERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHH 607
G+ L V LL++GADVN + + LH R +++ + L+
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVR-TASEELACLLMDF 244
Query: 608 GAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
GA K+ GK P+ ++ L
Sbjct: 245 GADTQAKN-AEGKRPV-ELVPPESPLAQLFL 273
Score = 127 bits (323), Expect = 4e-33
Identities = 64/343 (18%), Positives = 103/343 (30%), Gaps = 70/343 (20%)
Query: 271 ACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPI 330
+ LV R + + + L + + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSK---PAGPRDFPGIRLLSNPLMGDA-- 56
Query: 331 KRPNLLLDTVMSLKDPK--VMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKH 388
+ ++ +I + +N D ++PL A
Sbjct: 57 -------------VSDWSPMHEAAIHGHQL-SLRNLISQGWAVNIITADHVSPLHEACLG 102
Query: 389 CDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHG 448
L K L++ GA VN + + L AC + + V LLL HG
Sbjct: 103 GHLSCVKILLKHGAQVN-------------GVTADWHTPLFNACV-SGSWDCVNLLLQHG 148
Query: 449 ADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAA-RIAHSTTELE 507
A V S+ P+ A + G + V L YG ID + + +A
Sbjct: 149 ASVQPESD--LASPIHEAARRGHVECVNSLIAYGGNIDHKI--SHLGTPLYLA------- 197
Query: 508 ERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIV 567
+ + VKK +E GA VN + S L V EE+
Sbjct: 198 ------------------CENQQRACVKKLLESGADVNQGKGQD-SPLHAVVRTASEELA 238
Query: 568 DLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLL-HHGA 609
LL+D GAD K+A G + + + + L GA
Sbjct: 239 CLLMDFGADTQAKNAEGKRPVELVPP---ESPLAQLFLEREGA 278
Score = 123 bits (312), Expect = 1e-31
Identities = 56/283 (19%), Positives = 96/283 (33%), Gaps = 72/283 (25%)
Query: 385 AAKHCDLQSAKYLIQKGANVN----------------------LTETQKAFISDARSSDF 422
+ H + L+ +G+++ + + DA S
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD-- 59
Query: 423 CFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYG 482
S + A H + ++ L+ G VN + PL A G VK L +G
Sbjct: 60 --WSPMHEAAIH-GHQLSLRNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHG 115
Query: 483 AQIDKENYLKNKE-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVK 535
AQ++ + A S +D V
Sbjct: 116 AQVNG----VTADWHTPLFNACV-----------------------------SGSWDCVN 142
Query: 536 KNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFH 595
++ GA V S+ S + A +G+ E V+ L+ G +++ K + T L++AC
Sbjct: 143 LLLQHGASVQPESDLA-SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ 201
Query: 596 SNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
V+KLL GA D+ GK +PL + ++ LL
Sbjct: 202 QRA-CVKKLLESGA--DVNQGKGQDSPLHAVVRTASEELACLL 241
Score = 123 bits (311), Expect = 2e-31
Identities = 50/378 (13%), Positives = 105/378 (27%), Gaps = 100/378 (26%)
Query: 203 AVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDG 262
+ L+ + ++ + + + L S
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMA--SMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD 59
Query: 263 DLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQD 322
S +H+A G+ ++ L+ + + +N + P+ A G H + LL+
Sbjct: 60 --WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG--HLSCVKILLKHG 115
Query: 323 SINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPL 382
+ +N D TPL
Sbjct: 116 A----------------------------------------------QVNGVTADWHTPL 129
Query: 383 LFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVK 442
A L+Q GA+V + S + A + + ++E V
Sbjct: 130 FNACVSGSWDCVNLLLQHGASVQ--------------PESDLASPIHEAAR-RGHVECVN 174
Query: 443 LLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKN--KEAARIA 500
L+ +G +++ + PL +A ++ VK+L GA +++ + R A
Sbjct: 175 SLIAYGGNIDHKISH-LGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTA 233
Query: 501 HSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAW 560
+++ LL ++ GA + + V
Sbjct: 234 S--------EELACLL---------------------MDFGADTQAKNAEGKRPVELVPP 264
Query: 561 KGYEEIVDLLLDNGADVN 578
+ + L GA +
Sbjct: 265 ESPLAQL-FLEREGASLP 281
Score = 100 bits (252), Expect = 1e-23
Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 9/142 (6%)
Query: 52 AKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIH 111
+S + + A + V L++ G +++ K+ T LY+A V L+
Sbjct: 153 PESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRACVKKLLE 211
Query: 112 HGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDS 171
GA+VN + + +PLH ++ + L+ AD +AK + P+ V
Sbjct: 212 SGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPE----- 265
Query: 172 TDTNEIISMLIENGANVREKMP 193
+ L GA++ + P
Sbjct: 266 --SPLAQLFLEREGASLPKPKP 285
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 147 bits (375), Expect = 1e-40
Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 16/248 (6%)
Query: 51 SAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLI 110
S L S ++ + + G N+ + G TAL++A L+
Sbjct: 18 SCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL 77
Query: 111 HHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKA-DVRAKCSMMVTPILAVSANMSE 169
A+ N +D G TPLH A + + + L+ +A D+ A+ TP++ + E
Sbjct: 78 EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 137
Query: 170 DSTDTNEIISMLIENGANVREKMPFTD---FSPLHFAVVKKNLSVVELLIKCKADTNLIV 226
++ LI + A+V D S LH+A N+ +L+K A+ ++
Sbjct: 138 ------GMLEDLINSHADVNAV----DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187
Query: 227 KVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKR 286
+ P LF A S + + L + I+D A + IV++L
Sbjct: 188 NREETP-LFLAAREGSYETAK-VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245
Query: 287 KFDINAQN 294
+ +
Sbjct: 246 HHHHHHHH 253
Score = 136 bits (346), Expect = 2e-36
Identities = 57/339 (16%), Positives = 112/339 (33%), Gaps = 89/339 (26%)
Query: 115 NVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDT 174
+VN R G+TPL +A G ++ D
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEE--------------------------DA 35
Query: 175 NEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLL 234
+IS I GA++ + T + LH A + L++ AD N+ + + PL
Sbjct: 36 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL- 94
Query: 235 FFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQN 294
A+ +++ + + + ++ D+ D + L A + +++ L+ D+NA +
Sbjct: 95 HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 154
Query: 295 RYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQI 354
+ +A + + A LL+ +
Sbjct: 155 DLGKSALHWAAAVN--NVDAAVVLLKNGA------------------------------- 181
Query: 355 KRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFI 414
N + + + TPL AA+ ++AK L+ AN ++T
Sbjct: 182 ---------------NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT------- 219
Query: 415 SDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVND 453
D R A + + ++V+LL L +
Sbjct: 220 ------DHMDRLPRDIAQ-ERMHHDIVRLLDLEHHHHHH 251
Score = 124 bits (314), Expect = 4e-32
Identities = 62/290 (21%), Positives = 103/290 (35%), Gaps = 70/290 (24%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQS-------------AKYLIQKGANVNLTETQKAFISD 416
++N G D TPL+ A+ I +GA+ + +
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGAS----------LHN 51
Query: 417 ARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVK 476
D +AL A ++ + + K LL AD N N + PL A+ + + +
Sbjct: 52 QT--DRTGETALHLAARY-SRSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQ 107
Query: 477 ELQNYGAQ-IDKENYLKNKE-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRS 528
L A +D + + AAR+A + + + L
Sbjct: 108 ILIRNRATDLDA----RMHDGTTPLILAARLAV--------EGMLEDL------------ 143
Query: 529 NKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTAL 588
I A VN + SAL + A + +LL NGA+ + ++ T L
Sbjct: 144 ---------INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL 194
Query: 589 HMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+A R S + + LL H A D+ D + P A+ + DI+ LL
Sbjct: 195 FLAAREGSYE-TAKVLLDHFANRDITD-HMDRLPRDIAQERMHHDIVRLL 242
Score = 115 bits (291), Expect = 4e-29
Identities = 45/271 (16%), Positives = 84/271 (30%), Gaps = 79/271 (29%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGA-NV 116
T L A ++ + LL D N + GRT L+ A+ + +LI + A ++
Sbjct: 59 TALHLAARYSRSDAAKRLLEASA-DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNE 176
+ R G TPL LA L + +++ L++ ADV A D
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV--------------------DDLG 157
Query: 177 IISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFF 236
S LH+A N+ +L+K A+ +
Sbjct: 158 --------------------KSALHWAAAVNNVDAAVVLLKNGANKD------------- 184
Query: 237 AIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
+ + + L A G+ + ++L+ + + +
Sbjct: 185 ----------------------MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM 222
Query: 297 FLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
P A H + L + + +
Sbjct: 223 DRLPRDIAQERM--HHDIVRLLDLEHHHHHH 251
Score = 111 bits (281), Expect = 8e-28
Identities = 46/253 (18%), Positives = 90/253 (35%), Gaps = 44/253 (17%)
Query: 359 QIIKRIIDRTENINAEGD-DMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
+I I + +++ + D T L AA++ +AK L++ A+ N
Sbjct: 37 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN------------ 84
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
D R+ L A + + ++L+ + A D PL +A + ++++
Sbjct: 85 -IQDNMGRTPLHAAVS-ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLED 142
Query: 478 LQNYGAQIDKENYLKNKEAA-RIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKK 536
L N A ++ + ++A A N D
Sbjct: 143 LINSHADVNAVD--DLGKSALHWA-------------------------AAVNNVDAAVV 175
Query: 537 NIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHS 596
+++GA ++ + R + L A +G E +LLD+ A+ + +A
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 235
Query: 597 NDNIVRKLLHHGA 609
+D IVR L
Sbjct: 236 HD-IVRLLDLEHH 247
Score = 86.0 bits (214), Expect = 6e-19
Identities = 35/223 (15%), Positives = 69/223 (30%), Gaps = 44/223 (19%)
Query: 360 IIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGA-NVNLTETQKAFISDAR 418
KR+++ + + N + + TPL A + LI+ A +++
Sbjct: 72 AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD------------- 118
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+ + L A + M++ L+ ADVN + + L A + L
Sbjct: 119 ARMHDGTTPLILAARL-AVEGMLEDLINSHADVNAVDDL-GKSALHWAAAVNNVDAAVVL 176
Query: 479 QNYGAQIDKENYLKNKEAA-RIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKN 537
GA D +N +E +A R Y+ K
Sbjct: 177 LKNGANKDMQN--NREETPLFLA-------------------------AREGSYETAKVL 209
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFK 580
++ A +++ + + +IV LL +
Sbjct: 210 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 147 bits (373), Expect = 2e-40
Identities = 56/235 (23%), Positives = 100/235 (42%), Gaps = 17/235 (7%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDH---DVNEKLQDGRTALYMAILQGLYKMVTLLIHHGA 114
T L AV + V L++ +++ +T L++A++ L +V LL+ GA
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70
Query: 115 NVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKA----DVRAKCSMMVTP-ILAVSANMSE 169
+ D G T HLAC + ++ LL A D+ A+ +T +AV+
Sbjct: 71 SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-- 128
Query: 170 DSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVN 229
E + +L+E GA++ + SPL AV +LS+V+LL++ A+ N +
Sbjct: 129 -----QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG 183
Query: 230 QEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLV 284
L A + +V L D S+ + ++ L A + I++
Sbjct: 184 SSA-LHSASGRGLLPLVR-TLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKA 236
Score = 138 bits (350), Expect = 3e-37
Identities = 56/372 (15%), Positives = 108/372 (29%), Gaps = 138/372 (37%)
Query: 83 VNEKLQDGRTALYMAILQGLYKMVTLLI----HHGANVNDRDEKGYTPLHLACYLGNKNI 138
+DG T L++A++QG V L+ G ++ + TPLHLA ++
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 139 VKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFS 198
V+ L++ A A +G +
Sbjct: 62 VRLLVTAGASPMALD-----------------------------RHG-----------QT 81
Query: 199 PLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVS 258
H A ++ + + L+ A L D+
Sbjct: 82 AAHLACEHRSPTCLRALLDSAAPGTL-------------------------------DLE 110
Query: 259 ISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYF-LPPMFFAIGMGRKHTHVAEY 317
+ D + LH A + + VQ+L++R DI+A + P+ A+ + +
Sbjct: 111 ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN--SLSMVQL 168
Query: 318 LLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDD 377
LLQ + N+NA+
Sbjct: 169 LLQHGA----------------------------------------------NVNAQMYS 182
Query: 378 MITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNN 437
+ L A+ L + L++ GA+ + + + L A +
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGADSS-------------LKNCHNDTPLMVARS-RRV 228
Query: 438 IEMVKLLLLHGA 449
I++++ A
Sbjct: 229 IDILRGKATRPA 240
Score = 127 bits (321), Expect = 3e-33
Identities = 57/276 (20%), Positives = 102/276 (36%), Gaps = 50/276 (18%)
Query: 371 INAEGDDMITPLLFAAKHCDLQSAKYLI----QKGANVNLTETQKAFISDARSSDFCFRS 426
+D TPL A +L + L+ Q G +++ + ++
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-------------NNLRQT 48
Query: 427 ALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQID 486
L A +V+LL+ GA ++ Q +A + ++ L + A
Sbjct: 49 PLHLAVIT-TLPSVVRLLVTAGASPMAL-DRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106
Query: 487 KENYLKNKE---AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGAC 543
+ +N + A +A V + + V+ +E GA
Sbjct: 107 LDLEARNYDGLTALHVA-------------------------VNTECQETVQLLLERGAD 141
Query: 544 VNVSSERRG-SALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVR 602
++ + G S LI+ +V LLL +GA+VN + +G +ALH A +VR
Sbjct: 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS-GRGLLPLVR 200
Query: 603 KLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
L+ GA +K+ TPL A + + DI+
Sbjct: 201 TLVRSGADSSLKN-CHNDTPLMVARSRRVIDILRGK 235
Score = 122 bits (308), Expect = 2e-31
Identities = 52/268 (19%), Positives = 85/268 (31%), Gaps = 81/268 (30%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGA--- 114
T L AV V L++ G + G+TA ++A + L+ A
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAG-ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106
Query: 115 -NVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTD 173
++ R+ G T LH+A + V+ LL + AD+ A D
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV--------------------D 146
Query: 174 TNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPL 233
+G SPL AV +LS+V+LL++ A+ N
Sbjct: 147 IK--------SG-----------RSPLIHAVENNSLSMVQLLLQHGANVN---------- 177
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
+S LH A G L +V+ LV+ D + +
Sbjct: 178 -------------------------AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 212
Query: 294 NRYFLPPMFFAIGMGRKHTHVAEYLLQQ 321
N + P+ A + +
Sbjct: 213 NCHNDTPLMVARSRR--VIDILRGKATR 238
Score = 107 bits (271), Expect = 1e-26
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEK-LQDGRTALYMAILQGLYKMVTLLIHHGAN 115
LT L AV V+ LL G D++ ++ GR+ L A+ MV LL+ HGAN
Sbjct: 117 LTALHVAVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 116 VNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP-ILAVSANMSEDSTDT 174
VN + G + LH A G +V+ L+ AD K TP ++A S +
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI------ 229
Query: 175 NEIISMLIENGAN 187
+I+ A+
Sbjct: 230 -DILRGKATRPAS 241
Score = 104 bits (263), Expect = 1e-25
Identities = 54/293 (18%), Positives = 90/293 (30%), Gaps = 89/293 (30%)
Query: 197 FSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFD 256
+PLH AVV+ NL V L+ +
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVN-------------------------------LFQQGGRE 38
Query: 257 VSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAE 316
+ I + + LH A +V++LV A +R+ A
Sbjct: 39 LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHR--SPTCLR 96
Query: 317 YLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGD 376
LL + T ++ A
Sbjct: 97 ALLDSAA------------------------------------------PGTLDLEARNY 114
Query: 377 DMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKN 436
D +T L A ++ + L+++GA+++ + + RS L +A + N
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSG------------RSPLIHAVE-NN 161
Query: 437 NIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
++ MV+LLL HGA+VN L A G +V+ L GA +N
Sbjct: 162 SLSMVQLLLQHGANVNAQMYS-GSSALHSASGRGLLPLVRTLVRSGADSSLKN 213
Score = 100 bits (251), Expect = 7e-24
Identities = 47/319 (14%), Positives = 87/319 (27%), Gaps = 102/319 (31%)
Query: 268 LHKACHVGNLQIVQMLVKRKF----DINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDS 323
LH A GNL V LV +++ N P+ A+ V L+ +
Sbjct: 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT--LPSVVRLLVTAGA 70
Query: 324 INVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLL 383
+ A T
Sbjct: 71 ----------------------------------------------SPMALDRHGQTAAH 84
Query: 384 FAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKL 443
A +H + L+ A D + ++ +AL A + E V+L
Sbjct: 85 LACEHRSPTCLRALLDSAAPGT---------LDLEARNYDGLTALHVAV-NTECQETVQL 134
Query: 444 LLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE-------A 496
LL GAD++ K + PL A+++ +V+ L +GA ++ + A
Sbjct: 135 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA----QMYSGSSALHSA 190
Query: 497 ARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALI 556
+ + L + GA ++ + + L+
Sbjct: 191 SGRGL--------LPLVRTL---------------------VRSGADSSLKNCHNDTPLM 221
Query: 557 YVAWKGYEEIVDLLLDNGA 575
+ +I+ A
Sbjct: 222 VARSRRVIDILRGKATRPA 240
Score = 97.9 bits (245), Expect = 4e-23
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 47 INSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMV 106
I++ KS + L AV +N + V+ LL G +VN ++ G +AL+ A +GL +V
Sbjct: 142 IDAVDIKS-GRSPLIHAVENNSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLV 199
Query: 107 TLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKA 147
L+ GA+ + ++ TPL +A +I++ ++ A
Sbjct: 200 RTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 144 bits (367), Expect = 1e-39
Identities = 48/214 (22%), Positives = 86/214 (40%), Gaps = 10/214 (4%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
+ + G N+ + G TAL++A L+ A+ N +D G TPLH A
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66
Query: 132 YLGNKNIVKFLLSKKA-DVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVRE 190
+ + + L+ +A D+ A+ TP++ + E ++ LI + A+V
Sbjct: 67 SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE------GMLEDLINSHADVNA 120
Query: 191 KMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFL 250
S LH+A N+ +L+K A+ ++ + P LF A S + + L
Sbjct: 121 VDDL-GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP-LFLAAREGSYETAK-VL 177
Query: 251 NSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLV 284
+ I+D A + IV++L
Sbjct: 178 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 211
Score = 132 bits (334), Expect = 3e-35
Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 13/203 (6%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGA-NV 116
T L A ++ + LL D N + GRT L+ A+ + +LI + A ++
Sbjct: 27 TALHLAARYSRSDAAKRLLEAS-ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 85
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP-ILAVSANMSEDSTDTN 175
+ R G TPL LA L + +++ L++ ADV A + + A + N
Sbjct: 86 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN-------V 138
Query: 176 EIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLF 235
+ +L++NGAN + + +PL A + + ++L+ A+ ++ +++ P
Sbjct: 139 DAAVVLLKNGANKDMQNNR-EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP-RD 196
Query: 236 FAIESNSVKIVEAFLNSKNFDVS 258
A E IV L+ N S
Sbjct: 197 IAQERMHHDIVR-LLDEYNLVRS 218
Score = 119 bits (302), Expect = 7e-31
Identities = 46/253 (18%), Positives = 91/253 (35%), Gaps = 44/253 (17%)
Query: 360 IIKRIIDRTENINAEGD-DMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+I I + +++ + D T L AA++ +AK L++ A+ N
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN------------- 52
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
D R+ L A + + ++L+ + A D PL +A + ++++L
Sbjct: 53 IQDNMGRTPLHAAVS-ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 111
Query: 479 QNYGAQIDKENYLKNKEAA-RIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKN 537
N A ++ + ++A A N D
Sbjct: 112 INSHADVNAVD--DLGKSALHWA-------------------------AAVNNVDAAVVL 144
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+++GA ++ + R + L A +G E +LLD+ A+ + +A +
Sbjct: 145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 204
Query: 598 DNIVRKLLHHGAY 610
D IVR L +
Sbjct: 205 D-IVRLLDEYNLV 216
Score = 119 bits (301), Expect = 9e-31
Identities = 45/277 (16%), Positives = 96/277 (34%), Gaps = 63/277 (22%)
Query: 176 EIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLF 235
+IS I GA++ + T + LH A + L++ AD N+ + + P L
Sbjct: 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP-LH 63
Query: 236 FAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNR 295
A+ +++ + + + ++ D+ D + L A + +++ L+ D+NA +
Sbjct: 64 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD 123
Query: 296 YFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIK 355
+ +A + + A LL+ +
Sbjct: 124 LGKSALHWAAAVN--NVDAAVVLLKNGA-------------------------------- 149
Query: 356 RLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFIS 415
N + + + TPL AA+ ++AK L+ AN +
Sbjct: 150 --------------NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD---------- 185
Query: 416 DARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVN 452
+D R A + + ++V+LL + +
Sbjct: 186 ---ITDHMDRLPRDIAQ-ERMHHDIVRLLDEYNLVRS 218
Score = 114 bits (288), Expect = 4e-29
Identities = 54/252 (21%), Positives = 90/252 (35%), Gaps = 55/252 (21%)
Query: 394 AKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVND 453
I +GA+ + + D +AL A ++ + + K LL AD N
Sbjct: 7 ISDFIYQGAS----------LHNQT--DRTGETALHLAARY-SRSDAAKRLLEASADANI 53
Query: 454 TSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE-------AARIAHSTTEL 506
N + PL A+ + + + L A + + AAR+A
Sbjct: 54 QDNM-GRTPLHAAVSADAQGVFQILIRNRATDLDA---RMHDGTTPLILAARLAV----- 104
Query: 507 EERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEI 566
+ + + L I A VN + SAL + A +
Sbjct: 105 ---EGMLEDL---------------------INSHADVNAVDDLGKSALHWAAAVNNVDA 140
Query: 567 VDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHA 626
+LL NGA+ + ++ T L +A R S + + LL H A D+ D + P A
Sbjct: 141 AVVLLKNGANKDMQNNREETPLFLAAREGSYE-TAKVLLDHFANRDITD-HMDRLPRDIA 198
Query: 627 EAGKNRDIIDLL 638
+ + DI+ LL
Sbjct: 199 QERMHHDIVRLL 210
Score = 102 bits (257), Expect = 8e-25
Identities = 37/209 (17%), Positives = 76/209 (36%), Gaps = 39/209 (18%)
Query: 436 NNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE 495
+ ++ + GA +++ +++ + L +A + K L A + ++
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD--NMGR 59
Query: 496 -----AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGAC-VNVSSE 549
A + + +L I + A ++
Sbjct: 60 TPLHAAVSADA--------QGVFQIL---------------------IRNRATDLDARMH 90
Query: 550 RRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA 609
+ LI A E +++ L+++ ADVN G +ALH A ++ D LL +GA
Sbjct: 91 DGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD-AAVVLLKNGA 149
Query: 610 YYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
DM++ +TPL A + + +L
Sbjct: 150 NKDMQN-NREETPLFLAAREGSYETAKVL 177
Score = 96.7 bits (242), Expect = 6e-23
Identities = 51/350 (14%), Positives = 104/350 (29%), Gaps = 130/350 (37%)
Query: 241 NSVKIVEAFLNSKNFDVS-ISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLP 299
++ ++ F+ + + +D + LH A + L++ D N Q+
Sbjct: 2 DAPAVISDFI-YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 300 PMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQ 359
P+ A+ V + L++
Sbjct: 61 PLHAAVSAD--AQGVFQILIRN-------------------------------------- 80
Query: 360 IIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARS 419
R +++A D TPL+ AA+ + LI A+VN +
Sbjct: 81 -------RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG-------- 125
Query: 420 SDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQ 479
+SAL +A NN++ +LL +GA+ + +N+ ++ PL +A + G
Sbjct: 126 -----KSALHWAAAV-NNVDAAVVLLKNGANKDMQNNR-EETPLFLAAREG--------- 169
Query: 480 NYGAQIDKENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIE 539
+ E A+ +L ++
Sbjct: 170 -------------SYETAK----------------VL---------------------LD 179
Query: 540 DGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALH 589
A +++ + + +IV LL + + LH
Sbjct: 180 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS-------PQLH 222
Score = 94.4 bits (236), Expect = 5e-22
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
+ L A N + LL G + + + T L++A +G Y+ +L+ H AN +
Sbjct: 127 SALHWAAAVNNVDAAVVLLKNGA-NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 185
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
D P +A + +IV+ L +
Sbjct: 186 ITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ 220
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 144 bits (365), Expect = 1e-39
Identities = 53/245 (21%), Positives = 94/245 (38%), Gaps = 16/245 (6%)
Query: 85 EKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLS 144
E +A L ++ ++ + D+ T LH AC G+ IV+FLL
Sbjct: 2 EGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61
Query: 145 KKADVRAKCSMMVTP-ILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFA 203
V K +P +A SA EI+ L+ GA+V +PLH+A
Sbjct: 62 LGVPVNDKDDAGWSPLHIAASAGXD-------EIVKALLVKGAHVNAV-NQNGCTPLHYA 113
Query: 204 VVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGD 263
K + +L++ A+ + + + A ++K+V L +I D +
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATA-MHRAAAKGNLKMVH-ILLFYKASTNIQDTE 171
Query: 264 LNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDS 323
N+ LH AC ++ + LV + I +N+ P+ A G + L +
Sbjct: 172 GNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKG----GLGLILKRLAEGE 227
Query: 324 INVNL 328
++
Sbjct: 228 -EASM 231
Score = 135 bits (342), Expect = 2e-36
Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 12/235 (5%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
+ + A E +L+ QD RTAL+ A G ++V L+ G V
Sbjct: 8 IMICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNE 176
ND+D+ G++PLH+A G IVK LL K A V A TP+ ++ + +E
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK------NRHE 120
Query: 177 IISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFF 236
I ML+E GAN K + D + +H A K NL +V +L+ KA TN+ P L
Sbjct: 121 IAVMLLEGGANPDAKDHY-DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTP-LHL 178
Query: 237 AIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDIN 291
A + V+ + FL ++ + I + + + L A G L ++ + + +
Sbjct: 179 ACDEERVEEAK-FLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230
Score = 109 bits (274), Expect = 3e-27
Identities = 58/263 (22%), Positives = 96/263 (36%), Gaps = 45/263 (17%)
Query: 376 DDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHK 435
I A + + ++ + T+ R+AL +AC
Sbjct: 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDS-------------RTALHWACSA- 50
Query: 436 NNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE 495
+ E+V+ LL G VND + PL +A +G +IVK L GA ++ N+
Sbjct: 51 GHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGXDEIVKALLVKGAHVNA----VNQN 105
Query: 496 AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSAL 555
H N+++ +E GA + +A+
Sbjct: 106 GCTPLHYAAS----------------------KNRHEIAVMLLEGGANPDAKDHYDATAM 143
Query: 556 IYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKD 615
A KG ++V +LL A N + G T LH+AC + L+ GA +++
Sbjct: 144 HRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACD-EERVEEAKFLVTQGASIYIEN 202
Query: 616 GKTGKTPLKHAEAGKNRDIIDLL 638
K KTPL+ A+ G +I
Sbjct: 203 -KEEKTPLQVAKGGL--GLILKR 222
Score = 104 bits (261), Expect = 2e-25
Identities = 52/253 (20%), Positives = 77/253 (30%), Gaps = 44/253 (17%)
Query: 357 LDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISD 416
LD++ +RI+ D T L +A + ++L+Q G VN
Sbjct: 19 LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN----------- 67
Query: 417 ARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVK 476
D S L A E+VK LL+ GA VN N+ PL A +I
Sbjct: 68 --DKDDAGWSPLHIAA-SAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAV 123
Query: 477 ELQNYGAQIDKENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKK 536
L GA D K+ A H V
Sbjct: 124 MLLEGGANPDA----KDHYDATAMHRAAA----------------------KGNLKMVHI 157
Query: 537 NIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHS 596
+ A N+ + L + E L+ GA + ++ T L +A
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGL- 216
Query: 597 NDNIVRKLLHHGA 609
++ K L G
Sbjct: 217 --GLILKRLAEGE 227
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 142 bits (360), Expect = 1e-38
Identities = 65/236 (27%), Positives = 100/236 (42%), Gaps = 21/236 (8%)
Query: 58 TLLCSAVWDNKIREV-EFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
L A +N+ +V E L S + +K QDGR L+ ++ +++ + L+ NV
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 117 NDRDEK---GYTPLHLACYLGNKNIVKFLLSK--KADVRAKCSMMVTP-ILAVSANMSED 170
N D G+TP H+AC +GN +VK L + K D+ + VT LAV
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK---- 118
Query: 171 STDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLI-KCKADTNLIVKVN 229
E+ LIENGA+VR K F + PLH A +L ++ELL K+ N K
Sbjct: 119 ---WFEVSQFLIENGASVRIKDKF-NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 230 QEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVK 285
P LF A+ + + + D A + Q+ + +
Sbjct: 175 WTP-LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLN 226
Score = 134 bits (341), Expect = 4e-36
Identities = 51/240 (21%), Positives = 88/240 (36%), Gaps = 26/240 (10%)
Query: 90 GRTALYMAILQG-LYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
L+ A ++ +K+ LL + + +D+ G PLH + I FLLSK +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 149 VRAKCSMM---VTPILAVSANMSEDSTDTNEIISMLIEN--GANVREKMPFTD---FSPL 200
V TP + + E++ L + ++ + + L
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNL------EVVKSLYDRPLKPDLNKI----TNQGVTCL 111
Query: 201 HFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSIS 260
H AV KK V + LI+ A + K NQ P L A S+K++E V+
Sbjct: 112 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIP-LHRAASVGSLKLIELLCGLGKSAVNWQ 170
Query: 261 DGDLNSLLHKACHVGNLQIVQMLV-KRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLL 319
D + L A G+ +LV K + + + A+ + V ++ L
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL-----NEQVKKFFL 225
Score = 118 bits (298), Expect = 3e-30
Identities = 51/273 (18%), Positives = 90/273 (32%), Gaps = 56/273 (20%)
Query: 380 TPLLFAAKHCDLQS-AKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNI 438
PL A + + L K + + + D R L ++
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLL-----------QKDQDG--RIPLHWSVS-FQAH 49
Query: 439 EMVKLLLLHGADVN--DTSNKPKQKPLAVAIQSGDFQIVKEL--QNYGAQIDKENYLKNK 494
E+ LL +VN D + P +A G+ ++VK L + ++K
Sbjct: 50 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT--NQG 107
Query: 495 EAA-RIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGS 553
+A V ++ + IE+GA V + +
Sbjct: 108 VTCLHLA-------------------------VGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 554 ALIYVAWKGYEEIVDLLLDNG-ADVNFKSATGFTALHMACRFHSNDNIVRKLL-HHGAYY 611
L A G ++++LL G + VN++ G+T L A D L+ +GA Y
Sbjct: 143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD-AAVLLVEKYGAEY 201
Query: 612 DMKDGKTGKTPLKHAEAGKNRDIIDLLHLIDNL 644
D+ D G A N + ++N+
Sbjct: 202 DLVD-NKGAKAEDVA---LNEQVKKF--FLNNV 228
Score = 108 bits (273), Expect = 6e-27
Identities = 47/263 (17%), Positives = 94/263 (35%), Gaps = 60/263 (22%)
Query: 356 RLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFIS 415
++ + + + + + D PL ++ + +L+ K NVNL +
Sbjct: 14 EFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP----- 68
Query: 416 DARSSDFCFRSALQYACKHKNNIEMVKLLLLH--GADVNDTSNKPKQKPLAVAIQSGDFQ 473
D + AC N+E+VK L D+N +N+ L +A+ F+
Sbjct: 69 -----DDSGWTPFHIACS-VGNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFE 121
Query: 474 IVKELQNYGAQIDKENYLKNKE-------AARIAHSTTELEERKKINDLLKLNLDFLKNV 526
+ + L GA + K+K AA + K+ +LL
Sbjct: 122 VSQFLIENGASVRI----KDKFNQIPLHRAASVGS--------LKLIELL---------- 159
Query: 527 RSNKYDEVKKNIEDG-ACVNVSSERRGSALIYVAWKGYEEIVDLLLDN-GADVNFKSATG 584
G + VN ++ + L + +G+ + LL++ GA+ + G
Sbjct: 160 -----------CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Query: 585 FTALHMACRFHSNDNIVRKLLHH 607
A +A N+ + + L++
Sbjct: 209 AKAEDVA----LNEQVKKFFLNN 227
Score = 103 bits (259), Expect = 4e-25
Identities = 40/221 (18%), Positives = 73/221 (33%), Gaps = 37/221 (16%)
Query: 425 RSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQ 484
L AC ++ +LL + + + PL ++ +I L +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQD-GRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 485 IDKENYLKNKE------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNI 538
++ ++Y + A + + ++ L
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGN--------LEVVKSL------YDR------------- 94
Query: 539 EDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSND 598
+N + + + L K + E+ L++NGA V K LH A S
Sbjct: 95 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK 154
Query: 599 NIVRKLLHHG-AYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
++ L G + + +D K G TPL HA A + D LL
Sbjct: 155 -LIELLCGLGKSAVNWQD-KQGWTPLFHALAEGHGDAAVLL 193
Score = 92.1 bits (230), Expect = 3e-21
Identities = 56/351 (15%), Positives = 95/351 (27%), Gaps = 140/351 (39%)
Query: 123 GYTPLHLACYLGNKNIV-KFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISML 181
PLH AC V + L SK + + K D +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK--------------------DQDG----- 36
Query: 182 IENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESN 241
PLH++V + + L+ + NL
Sbjct: 37 ---------------RIPLHWSVSFQAHEITSFLLSKMENVNLD---------------- 65
Query: 242 SVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKF--DINAQNRYFLP 299
D + H AC VGNL++V+ L R D+N +
Sbjct: 66 ----------------DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT 109
Query: 300 PMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQ 359
+ A+G V+++L++ +
Sbjct: 110 CLHLAVGKK--WFEVSQFLIENGA------------------------------------ 131
Query: 360 IIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGAN-VNLTETQKAFISDAR 418
++ + PL AA L+ + L G + VN
Sbjct: 132 ----------SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN------------- 168
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLL-HGADVNDTSNKPKQKPLAVAIQ 468
D + L +A + + LL+ +GA+ + NK K VA+
Sbjct: 169 WQDKQGWTPLFHALAE-GHGDAAVLLVEKYGAEYDLVDNK-GAKAEDVALN 217
Score = 44.4 bits (106), Expect = 5e-05
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 584 GFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
LH AC + + L + KD + G+ PL + + + +I L
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWSVSFQAHEITSFL 55
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 140 bits (355), Expect = 6e-38
Identities = 44/221 (19%), Positives = 77/221 (34%), Gaps = 18/221 (8%)
Query: 85 EKLQDGRTALYMAILQG----LYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVK 140
+ +DG + L++AI+ +++ + A +N ++ TPLHLA I +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 141 FLLSKKADVRAKCSMMVTP-ILAVSANMSEDSTDTNEIISMLIENGANVREKMP-----F 194
LL D + TP LA + +L ++ +
Sbjct: 63 ALLGAGCDPELRDFRGNTPLHLACEQG-------CLASVGVLTQSCTTPHLHSILKATNY 115
Query: 195 TDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKN 254
+ LH A + L +VELL+ AD N N L A++ + +V L
Sbjct: 116 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCG 174
Query: 255 FDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNR 295
DV+ S + +I Q L + +
Sbjct: 175 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 215
Score = 131 bits (333), Expect = 6e-35
Identities = 45/216 (20%), Positives = 76/216 (35%), Gaps = 17/216 (7%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
+ + +N + +T L++A++ ++ L+ G + RD +G TPLHLAC
Sbjct: 28 IRQVKGDLA-FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 86
Query: 132 YLGNKNIVKFLLSKKADVRAKCSMMV------TPI-LAVSANMSEDSTDTNEIISMLIEN 184
G V L + T + LA I+ +L+
Sbjct: 87 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG-------YLGIVELLVSL 139
Query: 185 GANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVK 244
GA+V + P + LH AV +N +V LL+KC AD N + P S +
Sbjct: 140 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP-YQLTWGRPSTR 198
Query: 245 IVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIV 280
I + L + + +
Sbjct: 199 IQQ-QLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 125 bits (317), Expect = 7e-33
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 18/198 (9%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGAN-- 115
T L AV N+ E LL G D + G T L++A QG V +L
Sbjct: 47 TPLHLAVITNQPEIAEALLGAG-CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 116 ----VNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMM-VTP-ILAVSANMSE 169
+ + G+T LHLA G IV+ L+S ADV A+ T LAV
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ--- 162
Query: 170 DSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVN 229
+++S+L++ GA+V + +SP + + + + L + + ++
Sbjct: 163 ----NPDLVSLLLKCGADVNRVT-YQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP-E 216
Query: 230 QEPLLFFAIESNSVKIVE 247
E + ES + E
Sbjct: 217 SEDEESYDTESEFTEFTE 234
Score = 111 bits (279), Expect = 1e-27
Identities = 45/271 (16%), Positives = 78/271 (28%), Gaps = 60/271 (22%)
Query: 380 TPLLFAAKH----CDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHK 435
+ L A H ++ + + A +N + ++ L A
Sbjct: 10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-------------NNLQQTPLHLAVIT- 55
Query: 436 NNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYL--KN 493
N E+ + LL G D + PL +A + G V L + L N
Sbjct: 56 NQPEIAEALLGAGCDPELRDFR-GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114
Query: 494 KE-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNV 546
A+ + I +LL + GA VN
Sbjct: 115 YNGHTCLHLASIHGY--------LGIVELL---------------------VSLGADVNA 145
Query: 547 SSERRG-SALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLL 605
G +AL ++V LLL GADVN + G++ + S I ++L
Sbjct: 146 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR-IQQQLG 204
Query: 606 HHGAYYDMKDGKTGKTPLKHAEAGKNRDIID 636
+ + + + +
Sbjct: 205 QLTLENLQML-PESEDEESYDTESEFTEFTE 234
Score = 104 bits (261), Expect = 3e-25
Identities = 39/239 (16%), Positives = 71/239 (29%), Gaps = 46/239 (19%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
++I+++ +N + + TPL A + A+ L+ G + L
Sbjct: 26 EVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR----------- 74
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTS-----NKPKQKPLAVAIQSGDFQ 473
DF + L AC+ + V +L + S N L +A G
Sbjct: 75 --DFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG 131
Query: 474 IVKELQNYGAQIDKENYLKNKEAARIA-HSTTELEERKKINDLLKLNLDFLKNVRSNKYD 532
IV+ L + GA ++ + R A H + + + LL
Sbjct: 132 IVELLVSLGADVNA----QEPCNGRTALHLAVD-LQNPDLVSLL---------------- 170
Query: 533 EVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
++ GA VN + + S + I L +
Sbjct: 171 -----LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 224
Score = 101 bits (255), Expect = 2e-24
Identities = 49/347 (14%), Positives = 84/347 (24%), Gaps = 140/347 (40%)
Query: 120 DEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIIS 179
E G + LHLA K + E+I
Sbjct: 5 TEDGDSFLHLAIIHEEKALTM-----------------------------------EVIR 29
Query: 180 MLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIE 239
+ + A + + +PLH AV+ + E L+ D L
Sbjct: 30 QVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEALLGAGCDPEL--------------- 73
Query: 240 SNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKR------KFDINAQ 293
D N+ LH AC G L V +L + + A
Sbjct: 74 --------------------RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT 113
Query: 294 NRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQ 353
N + A G + + E L+ +
Sbjct: 114 NYNGHTCLHLASIHG--YLGIVELLVSLGA------------------------------ 141
Query: 354 IKRLDQIIKRIIDRTENINA-EGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKA 412
++NA E + T L A + L++ GA+VN
Sbjct: 142 ----------------DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN------- 178
Query: 413 FISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPK 459
+ S Q + + + + L + + +
Sbjct: 179 ------RVTYQGYSPYQLTWG-RPSTRIQQQLGQLTLENLQMLPESE 218
Score = 95.3 bits (238), Expect = 3e-22
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEK-LQDGRTALYMAILQGLYKMVTLLIHHGAN 115
T L A + VE L+S G DVN + +GRTAL++A+ +V+LL+ GA+
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
Query: 116 VNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
VN +GY+P L + I + L +
Sbjct: 177 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQM 213
Score = 77.6 bits (192), Expect = 3e-16
Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 8/121 (6%)
Query: 524 KNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSAT 583
++ + +++ D A +N + + + L EI + LL G D +
Sbjct: 18 HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR 77
Query: 584 GFTALHMACRFHSNDNIVRKLLHHGA------YYDMKDGKTGKTPLKHAEAGKNRDIIDL 637
G T LH+AC V L + G T L A I++L
Sbjct: 78 GNTPLHLACE-QGCLASVGVLTQSCTTPHLHSILKATN-YNGHTCLHLASIHGYLGIVEL 135
Query: 638 L 638
L
Sbjct: 136 L 136
Score = 76.8 bits (190), Expect = 6e-16
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 526 VRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGAD------VNF 579
V +N+ + + + G + R + L +G V +L + +
Sbjct: 53 VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA 112
Query: 580 KSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+ G T LH+A H IV L+ GA + ++ G+T L A +N D++ LL
Sbjct: 113 TNYNGHTCLHLASI-HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170
Score = 43.3 bits (103), Expect = 1e-04
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 584 GFTALHMACRFHSND---NIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
G + LH+A ++R++ A+ + ++ +TPL A +I + L
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN-NLQQTPLHLAVITNQPEIAEAL 64
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 137 bits (349), Expect = 7e-38
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 9/168 (5%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
+ + + + V L ++D+N+ G + L+ A +G +V +LI GA +
Sbjct: 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP-ILAVSANMSEDSTDTN 175
N + TPLHLA G+++IV+ LL KAD+ A P A +
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG-------QD 118
Query: 176 EIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
++ L+ NGA V + P+ A + E K + N
Sbjct: 119 QVAEDLVANGALVSICNKY-GEMPVDKAKAPLRELLRERAEKMGQNLN 165
Score = 119 bits (300), Expect = 3e-31
Identities = 40/197 (20%), Positives = 72/197 (36%), Gaps = 28/197 (14%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGAN-VNDRDEKGYTPLHLACYLGNKNIVKFLLSKKA 147
+ ++ +G V L + + N +N D+ G++PLH AC G +V+ L+ + A
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63
Query: 148 DVRAKCSMMVTP-ILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTD---FSPLHFA 203
+ TP LA S +I+ L++ A++ + PLH+A
Sbjct: 64 RINVMNRGDDTPLHLAASHGH-------RDIVQKLLQYKADINAV----NEHGNVPLHYA 112
Query: 204 VVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDG- 262
V E L+ A ++ K + P + A + E G
Sbjct: 113 CFWGQDQVAEDLVANGALVSICNKYGEMP-VDKAKAPLRELLRE-RA--------EKMGQ 162
Query: 263 DLNSL-LHKACHVGNLQ 278
+LN + G +
Sbjct: 163 NLNRIPYKDTFWKGTTR 179
Score = 96.3 bits (241), Expect = 3e-23
Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 12/177 (6%)
Query: 120 DEKGYTPLHLACYLGNKNIVKFLLSKKA-DVRAKCSMMVTP-ILAVSANMSEDSTDTNEI 177
+ + C GN V+ L D+ +P A S +
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRS-------AV 54
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
+ MLI GA + D +PLH A + +V+ L++ KAD N + + P L +A
Sbjct: 55 VEMLIMRGARINVMNRG-DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP-LHYA 112
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQN 294
++ E L + VSI + + KA + + K ++N
Sbjct: 113 CFWGQDQVAE-DLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP 168
Score = 94.8 bits (237), Expect = 1e-22
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
T L A V+ LL D+N + G L+ A G ++ L+ +GA V
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
+ ++ G P+ A + + + ++
Sbjct: 132 SICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRI 167
Score = 92.5 bits (231), Expect = 8e-22
Identities = 42/224 (18%), Positives = 69/224 (30%), Gaps = 62/224 (27%)
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
+F + V +L++ D++ D S LH AC G +V+ML+ R IN
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 294 NRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQ 353
NR P+ A G H + + LLQ +
Sbjct: 69 NRGDDTPLHLAASHG--HRDIVQKLLQYKA------------------------------ 96
Query: 354 IKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAF 413
+INA + PL +A Q A+ L+ GA V++
Sbjct: 97 ----------------DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC------ 134
Query: 414 ISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNK 457
+ + A + + G ++N K
Sbjct: 135 -------NKYGEMPVDKAKAP-LRELLRERAEKMGQNLNRIPYK 170
Score = 92.1 bits (230), Expect = 1e-21
Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 67/236 (28%)
Query: 268 LHKACHVGNLQIVQMLVKRK-FDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINV 326
+ C GN V++ + D+N + + P+ +A G + V E L+ + +
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREG--RSAVVEMLIMRGA--- 63
Query: 327 NLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAA 386
IN TPL AA
Sbjct: 64 -------------------------------------------RINVMNRGDDTPLHLAA 80
Query: 387 KHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLL 446
H + L+Q A++N + + L YAC ++ + L+
Sbjct: 81 SHGHRDIVQKLLQYKADIN-------------AVNEHGNVPLHYAC-FWGQDQVAEDLVA 126
Query: 447 HGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAHS 502
+GA V+ NK + P+ A + + + G +++ Y K+ +
Sbjct: 127 NGALVS-ICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPY---KDTFWKGTT 178
Score = 90.2 bits (225), Expect = 4e-21
Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 44/191 (23%)
Query: 427 ALQYACKHKNNIEMVKLLLLHGA-DVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQI 485
+ C + N V+L L + D+N + PL A + G +V+ L GA+I
Sbjct: 8 DIFTQC-REGNAVAVRLWLDNTENDLNQGDDH-GFSPLHWACREGRSAVVEMLIMRGARI 65
Query: 486 DKENYLKNKE-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNI 538
+ N+ AA D V+K +
Sbjct: 66 NV----MNRGDDTPLHLAAS-----------------------------HGHRDIVQKLL 92
Query: 539 EDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSND 598
+ A +N +E L Y + G +++ + L+ NGA V+ + G + A
Sbjct: 93 QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL 152
Query: 599 NIVRKLLHHGA 609
+ + G
Sbjct: 153 -LRERAEKMGQ 162
Score = 87.1 bits (217), Expect = 5e-20
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
I GA +NV + + L A G+ +IV LL AD+N + G LH AC F
Sbjct: 59 IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC-FWGQ 117
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
D + L+ +GA + + K G+ P+ A+A + +
Sbjct: 118 DQVAEDLVANGALVSICN-KYGEMPVDKAKAPLRELLRERA 157
Score = 86.7 bits (216), Expect = 7e-20
Identities = 31/207 (14%), Positives = 67/207 (32%), Gaps = 56/207 (27%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGAN-VNLTETQKAFISDARSSDFCFRSALQYACKHKNNI 438
+ + + + + + N +N + S L +AC+
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHG-------------FSPLHWACRE-GRS 52
Query: 439 EMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE--- 495
+V++L++ GA +N N+ PL +A G IV++L Y A I+ N+
Sbjct: 53 AVVEMLIMRGARINVM-NRGDDTPLHLAASHGHRDIVQKLLQYKADINA----VNEHGNV 107
Query: 496 ----AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERR 551
A ++ + L + +GA V++ ++
Sbjct: 108 PLHYACFWGQ--------DQVAEDL---------------------VANGALVSICNKYG 138
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVN 578
+ E + + G ++N
Sbjct: 139 EMPVDKAKAPLRELLRERAEKMGQNLN 165
Score = 82.5 bits (205), Expect = 2e-18
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 526 VRSNKYDEVKKNIEDGAC-VNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATG 584
R V+ +++ +N + S L + +G +V++L+ GA +N +
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 585 FTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
T LH+A H + +IV+KLL + A + + + G PL +A + + L
Sbjct: 73 DTPLHLAAS-HGHRDIVQKLLQYKADINAVN-EHGNVPLHYACFWGQDQVAEDL 124
Score = 69.4 bits (171), Expect = 7e-14
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 554 ALIYVAWKGYEEIVDLLLDNGA-DVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYD 612
+ +G V L LDN D+N GF+ LH ACR + +V L+ GA +
Sbjct: 8 DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSA-VVEMLIMRGARIN 66
Query: 613 MKDGKTGKTPLKHAEAGKNRDIIDLL 638
+ + + TPL A + +RDI+ L
Sbjct: 67 VMN-RGDDTPLHLAASHGHRDIVQKL 91
Score = 56.7 bits (138), Expect = 2e-09
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 63 AVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEK 122
A + + + E L++ G V+ + G + A + G N+N
Sbjct: 112 ACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR---- 166
Query: 123 GYTPLHLACYLGN 135
P + G
Sbjct: 167 --IPYKDTFWKGT 177
Score = 42.8 bits (102), Expect = 9e-05
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 584 GFTALHMACRFHSNDNIVRKLLHHGAYY-DMKDGKTGKTPLKHAEAGKNR-DIIDLL 638
+ CR N VR L + + D G +PL H + R ++++L
Sbjct: 5 FMDDIFTQCR-EGNAVAVRLWLDNTENDLNQGD-DHGFSPL-HWACREGRSAVVEML 58
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 130 bits (331), Expect = 2e-35
Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 7/166 (4%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
+ ++ +++ L GD+ VN+ + G T L A G + V L+ GA+ +
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEI 177
++ + L LA G +IV LL + D+ TP+L +
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHV------KC 117
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTN 223
+ L+ GA++ + ++P+ AV V +++
Sbjct: 118 VEALLARGADLTTEADS-GYTPMDLAVALGYRKVQQVIENHILKLF 162
Score = 121 bits (306), Expect = 5e-32
Identities = 39/212 (18%), Positives = 69/212 (32%), Gaps = 51/212 (24%)
Query: 90 GRTALYMAILQGLYKMVTLLIHHGAN-VNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
+++ QG + + G N VN DE+G+TPL A G V+FLL AD
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 149 VRAKCSMMVTP-ILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTD---FSPLHFAV 204
+ LA + + +I+ +L+E ++ D +PL +AV
Sbjct: 62 PHILAKERESALSLASTGGYT-------DIVGLLLERDVDINIY----DWNGGTPLLYAV 110
Query: 205 VKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDL 264
++ VE L+ AD
Sbjct: 111 RGNHVKCVEALLARGADLT-----------------------------------TEADSG 135
Query: 265 NSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
+ + A +G ++ Q++ + N
Sbjct: 136 YTPMDLAVALGYRKVQQVIENHILKLFQSNLV 167
Score = 107 bits (269), Expect = 5e-27
Identities = 33/203 (16%), Positives = 70/203 (34%), Gaps = 43/203 (21%)
Query: 427 ALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQID 486
++ + ++ +K L G ++ + ++ PL A G+ + V+ L +GA
Sbjct: 5 SIHQLAA-QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 487 KENYLKNKE-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIE 539
KE A+ + I LL +E
Sbjct: 64 I----LAKERESALSLASTGGY--------TDIVGLL---------------------LE 90
Query: 540 DGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDN 599
+N+ G+ L+Y + + V+ LL GAD+ ++ +G+T + +A
Sbjct: 91 RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVA-LGYRK 149
Query: 600 IVRKLLHHGAYYDMKDGKTGKTP 622
+ + + +H + P
Sbjct: 150 VQQVIENHILKLFQSN-LVPADP 171
Score = 97.1 bits (243), Expect = 1e-23
Identities = 29/223 (13%), Positives = 73/223 (32%), Gaps = 64/223 (28%)
Query: 268 LHKACHVGNLQIVQMLVKRKFD-INAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINV 326
+H+ G L ++ +++ + +N + P+ +A G +LL+ +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG--EIETVRFLLEWGA--- 60
Query: 327 NLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAA 386
+ + + + L A+
Sbjct: 61 -------------------------------------------DPHILAKERESALSLAS 77
Query: 387 KHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLL 446
L+++ ++N + + L YA N+++ V+ LL
Sbjct: 78 TGGYTDIVGLLLERDVDIN-----------IYDWN--GGTPLLYAV-RGNHVKCVEALLA 123
Query: 447 HGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
GAD+ T P+ +A+ G ++ + ++N+ ++ + N
Sbjct: 124 RGADLT-TEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165
Score = 97.1 bits (243), Expect = 1e-23
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLAC 131
V LL D+N +G T L A+ K V L+ GA++ + GYTP+ LA
Sbjct: 85 VGLLLERDV-DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV 143
Query: 132 YLGNKNIVKFLLSKKADVRAKCSMMVTP 159
LG + + + + + + + P
Sbjct: 144 ALGYRKVQQVIENHILKLFQSNLVPADP 171
Score = 90.9 bits (227), Expect = 2e-21
Identities = 39/184 (21%), Positives = 64/184 (34%), Gaps = 41/184 (22%)
Query: 462 PLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE-------AARIAHSTTELEERKKIND 514
+ G+ +KE G + N ++ A+ +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGD--NLVN-KPDERGFTPLIWASAFGE--------IETVR 53
Query: 515 LLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNG 574
L +E GA ++ ++ R SAL + GY +IV LLL+
Sbjct: 54 FL---------------------LEWGADPHILAKERESALSLASTGGYTDIVGLLLERD 92
Query: 575 ADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDI 634
D+N G T L A R ++ V LL GA + +G TP+ A A R +
Sbjct: 93 VDINIYDWNGGTPLLYAVR-GNHVKCVEALLARGADLTTEA-DSGYTPMDLAVALGYRKV 150
Query: 635 IDLL 638
++
Sbjct: 151 QQVI 154
Score = 90.6 bits (226), Expect = 2e-21
Identities = 35/215 (16%), Positives = 66/215 (30%), Gaps = 56/215 (26%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGAN-VNLTETQKAFISDARSSDFCFRSALQYACKHKNNI 438
+ A +L K ++KG N VN D + L +A I
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVN-------------KPDERGFTPLIWASA-FGEI 49
Query: 439 EMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE--- 495
E V+ LL GAD + + + ++ L++A G IV L I+ +
Sbjct: 50 ETVRFLLEWGADPHILAKE-RESALSLASTGGYTDIVGLLLERDVDINI----YDWNGGT 104
Query: 496 ----AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERR 551
A R H K + L + GA + ++
Sbjct: 105 PLLYAVRGNH--------VKCVEAL---------------------LARGADLTTEADSG 135
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
+ + GY ++ ++ ++ + +
Sbjct: 136 YTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 86.7 bits (216), Expect = 7e-20
Identities = 29/261 (11%), Positives = 72/261 (27%), Gaps = 96/261 (36%)
Query: 199 PLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVS 258
+H + L ++ ++ + V+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDN----------------------------------LVN 30
Query: 259 ISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYL 318
D + L A G ++ V+ L++ D + + + A G +T + L
Sbjct: 31 KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG--YTDIVGLL 88
Query: 319 LQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDM 378
L++D +IN +
Sbjct: 89 LERDV----------------------------------------------DINIYDWNG 102
Query: 379 ITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNI 438
TPLL+A + ++ + L+ +GA++ + + + A
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLT-----------TEADS--GYTPMDLAVAL-GYR 148
Query: 439 EMVKLLLLHGADVNDTSNKPK 459
++ +++ H + ++ P
Sbjct: 149 KVQQVIENHILKLFQSNLVPA 169
Score = 37.0 bits (87), Expect = 0.007
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 584 GFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
++H + +++ L G K + G TPL A A + + L
Sbjct: 2 DSLSIHQLAA-QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL 55
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 126 bits (320), Expect = 5e-34
Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 14/169 (8%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
+ ++ + + + +N ++G T L A G +V L+ +GA+
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQEN-VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEI 177
+ + L LAC G +IVK LL DV TP+L +
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHV------KC 117
Query: 178 ISMLIENGANVREKMPFTD---FSPLHFAVVKKNLSVVELLIKCKADTN 223
+ ML+E+GA+ + ++ + AV SV +++
Sbjct: 118 VKMLLESGADPTIE----TDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162
Score = 122 bits (308), Expect = 2e-32
Identities = 39/208 (18%), Positives = 72/208 (34%), Gaps = 44/208 (21%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
+++ QG + I +N DE+G+TPL A G +V+FLL AD
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 149 VRAKCSMMVTP-ILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKK 207
+ + LA S + +I+ ML++ G +V E +PL +AV
Sbjct: 62 PQLLGKGRESALSLACSKGYT-------DIVKMLLDCGVDVNEYDWN-GGTPLLYAVHGN 113
Query: 208 NLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSL 267
++ V++L++ AD I +
Sbjct: 114 HVKCVKMLLESGADPT-----------------------------------IETDSGYNS 138
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNR 295
+ A +G + Q++ + +
Sbjct: 139 MDLAVALGYRSVQQVIESHLLKLLQNIK 166
Score = 108 bits (272), Expect = 2e-27
Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 7/134 (5%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L A +I VEFLL G D + +AL +A +G +V +L+ G +VN
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGA-DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 96
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEI 177
+ D G TPL A + + VK LL AD + + A +
Sbjct: 97 EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR------SV 150
Query: 178 ISMLIENGANVREK 191
++ + + +
Sbjct: 151 QQVIESHLLKLLQN 164
Score = 97.5 bits (244), Expect = 1e-23
Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 63/222 (28%)
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
+H+ G + + ++++ IN + P+ +A G V E+LLQ +
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG--QIAVVEFLLQNGA---- 60
Query: 328 LPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAK 387
+ G + L A
Sbjct: 61 ------------------------------------------DPQLLGKGRESALSLACS 78
Query: 388 HCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLH 447
K L+ G +VN + + L YA H N+++ VK+LL
Sbjct: 79 KGYTDIVKMLLDCGVDVN-----------EYDWNG--GTPLLYAV-HGNHVKCVKMLLES 124
Query: 448 GADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
GAD + +A+ G + + ++++ ++ +
Sbjct: 125 GADPT-IETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165
Score = 91.3 bits (228), Expect = 1e-21
Identities = 37/184 (20%), Positives = 62/184 (33%), Gaps = 42/184 (22%)
Query: 462 PLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE-------AARIAHSTTELEERKKIND 514
+ G+ + I+ ++E AA + +
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINH----TDEEGFTPLMWAAAHGQ--------IAVVE 53
Query: 515 LLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNG 574
L +++GA + + R SAL KGY +IV +LLD G
Sbjct: 54 FL---------------------LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 92
Query: 575 ADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDI 634
DVN G T L A ++ V+ LL GA ++ +G + A A R +
Sbjct: 93 VDVNEYDWNGGTPLLYAVH-GNHVKCVKMLLESGADPTIET-DSGYNSMDLAVALGYRSV 150
Query: 635 IDLL 638
++
Sbjct: 151 QQVI 154
Score = 91.3 bits (228), Expect = 1e-21
Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 43/202 (21%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
+ A ++ I++ +N T+ + + L +A I
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENVINHTDEEG-------------FTPLMWAAA-HGQIA 50
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAA-R 498
+V+ LL +GAD K ++ L++A G IVK L + G +++ + N
Sbjct: 51 VVEFLLQNGADPQ-LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD--WNGGTPLL 107
Query: 499 IAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYV 558
A V N VK +E GA + ++ +++
Sbjct: 108 YA-------------------------VHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
Query: 559 AWKGYEEIVDLLLDNGADVNFK 580
GY + ++ + +
Sbjct: 143 VALGYRSVQQVIESHLLKLLQN 164
Score = 87.1 bits (217), Expect = 4e-20
Identities = 33/283 (11%), Positives = 61/283 (21%), Gaps = 123/283 (43%)
Query: 123 GYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLI 182
+H G + + ++ +
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTD----------------------------- 33
Query: 183 ENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNS 242
E G F+PL +A ++VVE L++ AD
Sbjct: 34 EEG-----------FTPLMWAAAHGQIAVVEFLLQNGADPQ------------------- 63
Query: 243 VKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMF 302
+ S L AC G IV+ML+ D+N + P+
Sbjct: 64 ----------------LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 107
Query: 303 FAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIK 362
+A+ H + LL+ +
Sbjct: 108 YAVHGN--HVKCVKMLLESGA--------------------------------------- 126
Query: 363 RIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVN 405
+ E D + A + + +
Sbjct: 127 -------DPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162
Score = 54.7 bits (133), Expect = 7e-09
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L AV N ++ V+ LL +G D + G ++ +A+ G + ++ H +
Sbjct: 104 TPLLYAVHGNHVKCVKMLLESGA-DPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162
Query: 118 DRD 120
Sbjct: 163 QNI 165
Score = 39.7 bits (94), Expect = 8e-04
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 584 GFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
++H + + + D + G TPL A A +++ L
Sbjct: 3 NSLSVHQLAA-QGEMLYLATRIEQENVINHTD-EEGFTPLMWAAAHGQIAVVEFL 55
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 129 bits (326), Expect = 6e-34
Identities = 34/252 (13%), Positives = 72/252 (28%), Gaps = 32/252 (12%)
Query: 47 INSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMV 106
I S D DV + T + A + + +
Sbjct: 6 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA-DVVSE---YETPWWTAARKADEQAL 61
Query: 107 TLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMM-VTPILAVSA 165
+ L+ +V+ DE G T L LG+ V+ L AD+ + +T + +
Sbjct: 62 SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120
Query: 166 NMSEDSTDTNEIISMLIENGANVREKMPFTD---FSPLHFAVVKKNLSVVELLIKCKADT 222
+ E++ L+E GA++ + D + L A + ++
Sbjct: 121 YVRP------EVVEALVELGADIEVE----DERGLTALELAREILKTTPKGNPMQFGRRI 170
Query: 223 NLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQM 282
L +N + ++ E + G + + +
Sbjct: 171 GLEKVIN----VLEGQVFEYAEVDE---------IVEKRGKGKDVEYLVRWKDGGDCEWV 217
Query: 283 LVKRKFDINAQN 294
+ A++
Sbjct: 218 KGVHVAEDVAKD 229
Score = 108 bits (273), Expect = 6e-27
Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 22/177 (12%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEK-LQDGRTALYMAILQGLYKMVTLLIHHGANV 116
T L + V L G D++ + ++ G TAL+MA ++V L+ GA++
Sbjct: 79 TALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 137
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNE 176
DE+G T L LA + + + + V + + E
Sbjct: 138 EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE---------KVINVLEGQVFEYAE 188
Query: 177 IISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPL 233
+ ++ + G + K + A+ K ++ L
Sbjct: 189 VDEIVEKRGKGK---------DVEYLVRWKDGGDCEWVKGVHVAEDV--AKDYEDGL 234
Score = 103 bits (258), Expect = 7e-25
Identities = 34/269 (12%), Positives = 71/269 (26%), Gaps = 82/269 (30%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
+ + L K S A+V +
Sbjct: 7 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY----------------ETPWW 50
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
A + K + + + LL DV+ ++ + L G + V+ L GA +D
Sbjct: 51 TAAR-KADEQALSQLL-EDRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDH-- 105
Query: 490 YLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSE 549
+++ G
Sbjct: 106 ----------------------------------------------RDMRGGL------- 112
Query: 550 RRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA 609
+AL A E+V+ L++ GAD+ + G TAL +A + G
Sbjct: 113 ---TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT-PKGNPMQFGR 168
Query: 610 YYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
++ + + + ++ +++
Sbjct: 169 RIGLEK----VINVLEGQVFEYAEVDEIV 193
Score = 101 bits (255), Expect = 2e-24
Identities = 37/229 (16%), Positives = 76/229 (33%), Gaps = 38/229 (16%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
++ +E + TP AA+ D Q+ L++ +V+ A + R+AL
Sbjct: 40 DVVSEYE---TPWWTAARKADEQALSQLLE-DRDVD-----------AVDENG--RTALL 82
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
+ + + V+LL GAD++ + L +A ++V+ L GA I+
Sbjct: 83 FVA-GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV-- 139
Query: 490 YLKNKE-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGA 542
+++ A I +T + ++ N + +
Sbjct: 140 --EDERGLTALELAREILKTTP-------KGNPMQFGRRIGLEKVINVLEGQVFEYAEVD 190
Query: 543 CVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
+ + V WK + + + A+ K L A
Sbjct: 191 EIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAK--DYEDGLEYA 237
Score = 97.7 bits (244), Expect = 6e-23
Identities = 45/393 (11%), Positives = 87/393 (22%), Gaps = 154/393 (39%)
Query: 78 TGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKN 137
+ +G + G + A+V + TP A ++
Sbjct: 3 VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQ 59
Query: 138 IVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDF 197
+ LL + DV A ENG
Sbjct: 60 ALSQLL-EDRDVDAVD-----------------------------ENG-----------R 78
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDV 257
+ L F + V LL + AD L+ ++
Sbjct: 79 TALLFVAGLGSDKCVRLLAEAGAD----------------------------LDHRDMR- 109
Query: 258 SISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEY 317
+ LH A ++V+ LV+ DI ++ L + A + T
Sbjct: 110 -----GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL--KTTPKGN 162
Query: 318 LLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDD 377
+Q I E
Sbjct: 163 PMQFGR----------------------------------------------RIGLEK-- 174
Query: 378 MITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNN 437
+ +L + + + ++G + + K+
Sbjct: 175 -VINVLEGQVFEYAEVDEIVEKRGKGKD---------------------VEYLV-RWKDG 211
Query: 438 IEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSG 470
+ + +H A+ K + L A+
Sbjct: 212 GDCEWVKGVHVAEDV---AKDYEDGLEYAVAES 241
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 126 bits (319), Expect = 7e-34
Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
L A + EV L++ G DVN + G T L++A G ++V +L+ +GA+VN
Sbjct: 16 KKLLEAARAGRDDEVRILMANGA-DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP-ILAVSANMSEDSTDTNE 176
D G TPL LA G+ IV+ LL ADV A TP LA E
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL-------E 127
Query: 177 IISMLIENGANVREKMPFTD---FSPLHFAVVKKNLSVVELLIK 217
I+ +L++NGA+V + D + ++ N + E+L K
Sbjct: 128 IVEVLLKNGADVNAQ----DKFGKTAFDISIDNGNEDLAEILQK 167
Score = 117 bits (297), Expect = 6e-31
Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
Query: 79 GDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNI 138
G H + D L A G V +L+ +GA+VN D G+TPLHLA + G+ I
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62
Query: 139 VKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFS 198
V+ LL ADV A +TP+ + EI+ +L++NGA+V +
Sbjct: 63 VEVLLKNGADVNAVDHAGMTPLRLAALFGHL------EIVEVLLKNGADVNANDME-GHT 115
Query: 199 PLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKN 254
PLH A + +L +VE+L+K AD N K + +I++ + + E L N
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA-FDISIDNGNEDLAE-ILQKLN 169
Score = 99.0 bits (248), Expect = 3e-24
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 108 LLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANM 167
HHG+++ L A G + V+ L++ ADV A+ + TP+ + N
Sbjct: 6 HHHHHGSDLG-------KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG 58
Query: 168 SEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVK 227
EI+ +L++NGA+V +PL A + +L +VE+L+K AD N
Sbjct: 59 HL------EIVEVLLKNGADVNAVDHA-GMTPLRLAALFGHLEIVEVLLKNGADVNANDM 111
Query: 228 VNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVK 285
P L A ++IVE L DV+ D + + GN + ++L K
Sbjct: 112 EGHTP-LHLAAMFGHLEIVE-VLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 92.8 bits (232), Expect = 5e-22
Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 42/200 (21%)
Query: 446 LHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE-------AAR 498
+ G+ + K L A ++G V+ L GA ++ ++ AA
Sbjct: 1 MRGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNA----EDASGWTPLHLAAF 56
Query: 499 IAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYV 558
H +I ++L +++GA VN + L
Sbjct: 57 NGH--------LEIVEVL---------------------LKNGADVNAVDHAGMTPLRLA 87
Query: 559 AWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKT 618
A G+ EIV++LL NGADVN G T LH+A F + IV LL +GA + +D K
Sbjct: 88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE-IVEVLLKNGADVNAQD-KF 145
Query: 619 GKTPLKHAEAGKNRDIIDLL 638
GKT + N D+ ++L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
Score = 91.7 bits (229), Expect = 1e-21
Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 63/224 (28%)
Query: 391 LQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGAD 450
++ + + G+++ L A + + V++L+ +GAD
Sbjct: 1 MRGSHHHHHHGSDLG--------------------KKLLEAAR-AGRDDEVRILMANGAD 39
Query: 451 VNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE-------AARIAHST 503
VN PL +A +G +IV+ L GA ++ + AA H
Sbjct: 40 VNAEDAS-GWTPLHLAAFNGHLEIVEVLLKNGADVNA----VDHAGMTPLRLAALFGH-- 92
Query: 504 TELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGY 563
+I ++L +++GA VN + + L A G+
Sbjct: 93 ------LEIVEVL---------------------LKNGADVNANDMEGHTPLHLAAMFGH 125
Query: 564 EEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHH 607
EIV++LL NGADVN + G TA ++ + D + L
Sbjct: 126 LEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED-LAEILQKL 168
Score = 90.1 bits (225), Expect = 4e-21
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L A + VE LL G DVN +G T L++A + G ++V +L+ +GA+VN
Sbjct: 82 TPLRLAALFGHLEIVEVLLKNGA-DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSK 145
+D+ G T ++ GN+++ + L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 88.2 bits (220), Expect = 2e-20
Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 64/224 (28%)
Query: 256 DVSISDG-DLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHV 314
G DL L +A G V++L+ D+NA++ P+ A G H +
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG--HLEI 62
Query: 315 AEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAE 374
E LL+ + ++NA
Sbjct: 63 VEVLLKNGA----------------------------------------------DVNAV 76
Query: 375 GDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
+TPL AA L+ + L++ GA+VN ++D + L A
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVN-------------ANDMEGHTPLHLAAMF 123
Query: 435 KNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
++E+V++LL +GADVN +K + ++I +G+ + + L
Sbjct: 124 -GHLEIVEVLLKNGADVN-AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 82.0 bits (204), Expect = 3e-18
Identities = 45/208 (21%), Positives = 79/208 (37%), Gaps = 51/208 (24%)
Query: 369 ENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSAL 428
+ + G D+ LL AA+ + L+ GA+VN + D + L
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVN-------------AEDASGWTPL 51
Query: 429 QYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKE 488
A ++E+V++LL +GADVN + PL +A G +IV+ L GA ++
Sbjct: 52 HLAAF-NGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN 109
Query: 489 NYLKNKE-----AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGAC 543
+ AA H +I ++L +++GA
Sbjct: 110 D--MEGHTPLHLAAMFGH--------LEIVEVL---------------------LKNGAD 138
Query: 544 VNVSSERRGSALIYVAWKGYEEIVDLLL 571
VN + +A G E++ ++L
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 74.7 bits (185), Expect = 9e-16
Identities = 45/267 (16%), Positives = 80/267 (29%), Gaps = 105/267 (39%)
Query: 181 LIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIES 240
+G+++ L A V +L+ AD N
Sbjct: 7 HHHHGSDLG--------KKLLEAARAGRDDEVRILMANGADVN----------------- 41
Query: 241 NSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPP 300
D + LH A G+L+IV++L+K D+NA + + P
Sbjct: 42 ------------------AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTP 83
Query: 301 MFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQI 360
+ A G H + E LL+ +
Sbjct: 84 LRLAALFG--HLEIVEVLLKNGA------------------------------------- 104
Query: 361 IKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSS 420
++NA + TPL AA L+ + L++ GA+VN +
Sbjct: 105 ---------DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-------------AQ 142
Query: 421 DFCFRSALQYACKHKNNIEMVKLLLLH 447
D ++A + N ++ ++L
Sbjct: 143 DKFGKTAFDISI-DNGNEDLAEILQKL 168
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 127 bits (321), Expect = 2e-33
Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 15/214 (7%)
Query: 72 VEFLLSTGDHDVNEK---LQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLH 128
+ +L + + L A L G ++V + + + +E+G T LH
Sbjct: 1 MRSVLRKAG-SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALH 59
Query: 129 LACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANV 188
A N +IV FL++ A+V + S TP+ ++ I L+++GA +
Sbjct: 60 NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDT------VICMALVQHGAAI 113
Query: 189 REKMPFTDFSPLHFAVVKKN--LSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIV 246
+ + L + L+ L ++ E
Sbjct: 114 FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG---DE 170
Query: 247 EAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIV 280
+F ++ V DG + A G V
Sbjct: 171 LSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204
Score = 95.8 bits (239), Expect = 1e-22
Identities = 38/285 (13%), Positives = 74/285 (25%), Gaps = 81/285 (28%)
Query: 361 IKRIIDRTENINA---EGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDA 417
++ ++ + + + + LL AA +L+ + +++ + +
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS------------ 48
Query: 418 RSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+ +AL A N +V L+ GA+VN + PL A D I
Sbjct: 49 -QPNEEGITALHNAI-CGANYSIVDFLITAGANVNSPDSH-GWTPLHCAASCNDTVICMA 105
Query: 478 LQNYGAQIDKENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKN 537
L +GA I
Sbjct: 106 LVQHGAAIFA------------------------------------------------TT 117
Query: 538 IEDGACVNVSSERRGSALIY--VAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFH 595
+ DGA +A +GY + L D + ++ AL
Sbjct: 118 LSDGA----------TAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSA-- 165
Query: 596 SNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLLHL 640
+ + +DG +T A + +
Sbjct: 166 EFGDELSFREGESVTVLRRDGP-EETDWWWAALHGQEGYVPRNYF 209
Score = 82.3 bits (204), Expect = 7e-18
Identities = 39/345 (11%), Positives = 68/345 (19%), Gaps = 140/345 (40%)
Query: 106 VTLLIHHGANVNDRDEKGYTP---LHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILA 162
+ ++ + P L A G +V+ + + D
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPN--------- 51
Query: 163 VSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADT 222
E G + LH A+ N S+V+ LI A+
Sbjct: 52 --------------------EEG-----------ITALHNAICGANYSIVDFLITAGAN- 79
Query: 223 NLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQM 282
+NS + S G + LH A + I
Sbjct: 80 ---------------------------VNSPD-----SHG--WTPLHCAASCNDTVICMA 105
Query: 283 LVKRKFDINAQNRYF-LPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVM 341
LV+ I A + A YL
Sbjct: 106 LVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYL----------------------- 142
Query: 342 SLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKG 401
D +++ + L + + + +
Sbjct: 143 -----------------------ADVEQSMGLMNSGAVYALWDYSAEFGDE-LSFREGES 178
Query: 402 ANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLL 446
V D + +A H V
Sbjct: 179 VTVL-------------RRDGPEETDWWWAALH-GQEGYVPRNYF 209
Score = 81.5 bits (202), Expect = 1e-17
Identities = 32/210 (15%), Positives = 58/210 (27%), Gaps = 43/210 (20%)
Query: 360 IIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARS 419
++++ + + + ++ IT L A + +LI GANVN +
Sbjct: 36 VVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN-----------SPD 84
Query: 420 SDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPL--AVAIQSGDFQIVKE 477
S + L A N+ + L+ HGA + T+ + G
Sbjct: 85 SH--GWTPLHCAA-SCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATY 141
Query: 478 LQNYGAQIDKENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKN 537
L + + N A +S DE+
Sbjct: 142 LADVEQSMGLMN--SGAVYALWDYSAEFG-------------------------DELSFR 174
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIV 567
+ V + + A G E V
Sbjct: 175 EGESVTVLRRDGPEETDWWWAALHGQEGYV 204
Score = 75.4 bits (186), Expect = 2e-15
Identities = 38/270 (14%), Positives = 71/270 (26%), Gaps = 72/270 (26%)
Query: 212 VELLIKCKADTNLIVKVNQEPL--LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLH 269
+ +++ + PL L A + +++V+ + D S + + + LH
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQ-QAVKEMNDPSQPNEEGITALH 59
Query: 270 KACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLP 329
A N IV L+ ++N+ + + P+ A T + L+Q +
Sbjct: 60 NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN--DTVICMALVQHGA------ 111
Query: 330 IKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGD-DMITPLLFAAKH 388
I A D T +
Sbjct: 112 ----------------------------------------AIFATTLSDGATAFEKCDPY 131
Query: 389 CD--LQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLL 446
+ A YL ++ L + AL + E L
Sbjct: 132 REGYADCATYLADVEQSMGLMNSGA-------------VYALWDYSA-EFGDE---LSFR 174
Query: 447 HGADVN-DTSNKPKQKPLAVAIQSGDFQIV 475
G V + P++ A G V
Sbjct: 175 EGESVTVLRRDGPEETDWWWAALHGQEGYV 204
Score = 63.0 bits (154), Expect = 3e-11
Identities = 13/101 (12%), Positives = 25/101 (24%), Gaps = 3/101 (2%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDR 119
C + +L + AL+ + ++ V R
Sbjct: 127 KCDPYREGYADCATYLADVEQ-SMGLMNSGAVYALWDYSAEFG-DELSFREGESVTVLRR 184
Query: 120 DEKGYTPLHLACYLGNKNIV-KFLLSKKADVRAKCSMMVTP 159
D T A G + V + V+ + S +
Sbjct: 185 DGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHH 225
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 127 bits (322), Expect = 2e-33
Identities = 41/235 (17%), Positives = 84/235 (35%), Gaps = 29/235 (12%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
L N + ++ G V L + L+G + +V +I+ + +
Sbjct: 7 VSLPPGKRTNLRKTGSERIAHGM-RVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPS 64
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP-ILAVSANMSEDSTDTNE 176
+++G T LH A G+ IVKFL+ +V A S TP A S N +
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN-------NVQ 117
Query: 177 IISMLIENGANVREK--MPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLL 234
+ L+E+GA V + + + + L + ++ K L
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALW 177
Query: 235 FFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFD 289
+ +++ ++ + +GD +++H+ + ++ R D
Sbjct: 178 DYEPQNDD-------------ELPMKEGDCMTIIHR----EDEDEIEWWWARLND 215
Score = 120 bits (302), Expect = 8e-31
Identities = 38/179 (21%), Positives = 62/179 (34%), Gaps = 14/179 (7%)
Query: 52 AKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIH 111
+ L LL + + + V+ ++ D D + +G TAL+ A+ G ++V L+
Sbjct: 33 FNPLPLALLLDSSLEGEFDLVQRIIYEVD-DPSLPNDEGITALHNAVCAGHTEIVKFLVQ 91
Query: 112 HGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCS---MMVTPILAVSANMS 168
G NVN D G+TPLH A N + KFL+ A V A
Sbjct: 92 FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGY 151
Query: 169 EDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVK 227
+ L + L + + EL +K +I +
Sbjct: 152 T------QCSQFLYGVQEKMGIMNKG-VIYALWDYEPQNDD---ELPMKEGDCMTIIHR 200
Score = 118 bits (298), Expect = 3e-30
Identities = 38/228 (16%), Positives = 70/228 (30%), Gaps = 48/228 (21%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
G+ +L L K + I HG V + L + G ++V+ ++ + D
Sbjct: 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDD 62
Query: 149 VRAKCSMMVTP-ILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTD---FSPLHFAV 204
+T AV A + EI+ L++ G NV D ++PLH A
Sbjct: 63 PSLPNDEGITALHNAVCAGHT-------EIVKFLVQFGVNVNAA----DSDGWTPLHCAA 111
Query: 205 VKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDL 264
N+ V + L++ A + + SD
Sbjct: 112 SCNNVQVCKFLVESGAA----------------------------VFAMT----YSDMQT 139
Query: 265 NSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHT 312
+ + G Q Q L + + N+ + ++
Sbjct: 140 AADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL 187
Score = 105 bits (264), Expect = 9e-26
Identities = 32/240 (13%), Positives = 59/240 (24%), Gaps = 63/240 (26%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
L + ++ I G V A L + + +
Sbjct: 7 VSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLA--------------LLLDSSL-EGEFD 51
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE---- 495
+V+ ++ D + N L A+ +G +IVK L +G ++ + +
Sbjct: 52 LVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA----ADSDGWTP 106
Query: 496 ---AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRG 552
AA N K +E GA V +
Sbjct: 107 LHCAA-----------------------------SCNNVQVCKFLVESGAAVFAMTYSDM 137
Query: 553 ---SALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA 609
+ +GY + L + + AL N + G
Sbjct: 138 QTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDY----EPQNDDELPMKEGD 193
Score = 89.6 bits (223), Expect = 3e-20
Identities = 31/224 (13%), Positives = 58/224 (25%), Gaps = 65/224 (29%)
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
L + + + + + G + + ++ +
Sbjct: 9 LPPGKRTNLRKTGSERIAHGMRVKFNPLPLAL-LLDSSLEG--EFDLVQRIIYEVD---- 61
Query: 328 LPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAK 387
+ + D+ IT L A
Sbjct: 62 ------------------------------------------DPSLPNDEGITALHNAVC 79
Query: 388 HCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLH 447
+ K+L+Q G NVN A SD + L A NN+++ K L+
Sbjct: 80 AGHTEIVKFLVQFGVNVN-----------AADSD--GWTPLHCAA-SCNNVQVCKFLVES 125
Query: 448 GADVNDTSNKPKQK--PLAVAIQSGDFQIVKELQNYGAQIDKEN 489
GA V + Q ++ G Q + L ++ N
Sbjct: 126 GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN 169
Score = 85.4 bits (212), Expect = 8e-19
Identities = 40/241 (16%), Positives = 69/241 (28%), Gaps = 62/241 (25%)
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
L +N K + V + L +LL + G +VQ ++ D +
Sbjct: 9 LPPGKRTNLRKTGS-ERIAHGMRVKFNPLPL-ALLLDSSLEGEFDLVQRIIYEVDDPSLP 66
Query: 294 NRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQ 353
N + + A+ G HT + ++L+Q
Sbjct: 67 NDEGITALHNAVCAG--HTEIVKFLVQFGV------------------------------ 94
Query: 354 IKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAF 413
N+NA D TPL AA ++Q K+L++ GA V
Sbjct: 95 ----------------NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-------- 130
Query: 414 ISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQ 473
SD + + + + L + NK L D +
Sbjct: 131 --AMTYSDMQTAADKCEEM-EEGYTQCSQFLYGVQEKMGIM-NKGVIYALWDYEPQNDDE 186
Query: 474 I 474
+
Sbjct: 187 L 187
Score = 83.0 bits (206), Expect = 4e-18
Identities = 29/179 (16%), Positives = 59/179 (32%), Gaps = 30/179 (16%)
Query: 462 PLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAHSTTELEERKKINDLLKLNLD 521
L ++ + E +G ++ + A + S
Sbjct: 8 SLPPGKRTNLRKTGSERIAHGMRV---KFNPLPLALLLDSS------------------- 45
Query: 522 FLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKS 581
++D V++ I + ++ ++ +AL G+ EIV L+ G +VN
Sbjct: 46 -----LEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 582 ATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKN--RDIIDLL 638
+ G+T LH A ++ + + L+ GA +T E + L
Sbjct: 101 SDGWTPLHCAASCNNVQ-VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158
Score = 78.0 bits (193), Expect = 2e-16
Identities = 32/236 (13%), Positives = 65/236 (27%), Gaps = 44/236 (18%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+ I + + LL ++ + + +I + + +L +
Sbjct: 19 KTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG------- 70
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+AL A + E+VK L+ G +VN + PL A + Q+ K L
Sbjct: 71 ------ITALHNAV-CAGHTEIVKFLVQFGVNVNAADSD-GWTPLHCAASCNNVQVCKFL 122
Query: 479 QNYGAQIDKENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNI 538
GA + Y + AA + +
Sbjct: 123 VESGAAVFAMTYSDMQTAADKCEE-----------------------MEEGYTQCSQFLY 159
Query: 539 EDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNF--KSATGFTALHMAC 592
+ + ++ AL + +E L + G + + A
Sbjct: 160 GVQEKMGIMNKGVIYALWDYEPQNDDE---LPMKEGDCMTIIHREDEDEIEWWWAR 212
Score = 48.4 bits (116), Expect = 3e-06
Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 16/87 (18%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
C + + + +FL + + AL+ Q + + +
Sbjct: 141 ADKCEEMEEGYTQCSQFLYGVQ-EKMGIMNKGVIYALWDYEPQN-DDELPMKEGDCMTII 198
Query: 118 DR--------------DEKGYTPLHLA 130
R D++GY P +L
Sbjct: 199 HREDEDEIEWWWARLNDKEGYVPRNLL 225
Score = 39.1 bits (92), Expect = 0.002
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 584 GFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
G +L R + + + HG +K L + D++ +
Sbjct: 5 GQVSLPPGKRTNLRK-TGSERIAHGM--RVKFNPLPLALLLDSSLEGEFDLVQRI 56
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 126 bits (319), Expect = 4e-33
Identities = 37/189 (19%), Positives = 74/189 (39%), Gaps = 26/189 (13%)
Query: 58 TLLCSAVWDNKIREVEFLLSTG----DHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHG 113
T L A + + L+ + +L +G+TAL++A++ +V L+ G
Sbjct: 39 TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98
Query: 114 ANVNDRDEK-------------GYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI 160
A+V+ R G PL A +G++ IV+ L+ AD+RA+ S+ T +
Sbjct: 99 ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Query: 161 -LAVSANMSEDSTDTNEIISMLIENGANVREKMPFTD-----FSPLHFAVVKKNLSVVEL 214
+ + + + L+ K +P A V+ N+ + +
Sbjct: 159 HILILQPNKTFACQMYNL---LLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQH 215
Query: 215 LIKCKADTN 223
L++ +
Sbjct: 216 LMQKRKHIA 224
Score = 124 bits (314), Expect = 2e-32
Identities = 49/255 (19%), Positives = 92/255 (36%), Gaps = 46/255 (18%)
Query: 58 TLLCSAVWDNKIREV-EFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
+ L A +N ++ + + L G +V+++ G TAL++A L + +L+ +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGC-EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 117 -----NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDS 171
+G T LH+A N N+V+ LL++ A V A+
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSAR------------------- 104
Query: 172 TDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQE 231
T + N E PL FA + +V LLI+ AD +
Sbjct: 105 -ATGSVFHYRPHNLIYYGE-------HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT 156
Query: 232 PLLFFAIESNSVKIVEAFL----------NSKNFDVSISDGDLNSLLHKACHVGNLQIVQ 281
L I + + K+ + + + + A GN+ + Q
Sbjct: 157 V-LHILILQPNKTFACQMYNLLLSYDGGDHLKSLE-LVPNNQGLTPFKLAGVEGNIVMFQ 214
Query: 282 MLVKRKFDINAQNRY 296
L++++ I A + +
Sbjct: 215 HLMQKRKHIAAAHHH 229
Score = 116 bits (293), Expect = 1e-29
Identities = 50/272 (18%), Positives = 89/272 (32%), Gaps = 73/272 (26%)
Query: 380 TPLLFAAKHCDLQS-AKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNI 438
+PLL AAK D+Q+ +K L +G V+ +AL A + +N+
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQR-------------GAMGETALHIAALY-DNL 50
Query: 439 EMVKLLLLHGADVNDTSNKPKQK----PLAVAIQSGDFQIVKELQNYGAQIDKENYLKNK 494
E +L+ ++ + L +A+ + + +V+ L GA + +
Sbjct: 51 EAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSA----RAT 106
Query: 495 EAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSA 554
+ + +
Sbjct: 107 GSVFHYRPHNLIYYGE------------------------------------------HP 124
Query: 555 LIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSND---NIVRKLLHHGAYY 611
L + A G EEIV LL+++GAD+ + + G T LH+ + + LL +
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184
Query: 612 DMKDG-----KTGKTPLKHAEAGKNRDIIDLL 638
+K G TP K A N + L
Sbjct: 185 HLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216
Score = 90.4 bits (225), Expect = 1e-20
Identities = 41/345 (11%), Positives = 88/345 (25%), Gaps = 122/345 (35%)
Query: 123 GYTPLHLACYLGN-KNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISML 181
+PL LA + + + K L + +V +
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRG---------------------------- 34
Query: 182 IENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESN 241
G + LH A + NL +L++ +
Sbjct: 35 -AMG-----------ETALHIAALYDNLEAAMVLMEAAPE-------------------- 62
Query: 242 SVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPM 301
+V + S+ ++ G + LH A N+ +V+ L+ R ++A+ +
Sbjct: 63 ---LVFEPMTSELYE-----G--QTALHIAVINQNVNLVRALLARGASVSARATGSVFHY 112
Query: 302 FFAIGMGRKHT--HVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQ 359
+ A + ++
Sbjct: 113 RPHNLIYYGEHPLSFAACVGSEE------------------------------------- 135
Query: 360 IIKRIIDRTENINAEGDDMITPLLFAAKHCD----LQSAKYLIQKGANVNLTETQKAFIS 415
I++ +I+ +I A+ T L + Q L+ +L S
Sbjct: 136 IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLK-------S 188
Query: 416 DARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQ 460
+ + + A NI M + L+ + +
Sbjct: 189 LELVPNNQGLTPFKLAGVE-GNIVMFQHLMQKRKHIAAAHHHHHH 232
Score = 90.0 bits (224), Expect = 2e-20
Identities = 35/312 (11%), Positives = 80/312 (25%), Gaps = 95/312 (30%)
Query: 268 LHKACHVGNLQIVQ-MLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINV 326
L A ++Q + +L +++ + + A + A L++ +
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYD--NLEAAMVLMEAA-PEL 63
Query: 327 NLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAA 386
E + +E + T L A
Sbjct: 64 V----------------------------------------FEPMTSELYEGQTALHIAV 83
Query: 387 KHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLL 446
+ ++ + L+ +GA+V+ T F + + L +A + E+V+LL+
Sbjct: 84 INQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV-GSEEIVRLLIE 142
Query: 447 HGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAHSTTEL 506
HGAD+ + L + I + ++ N D
Sbjct: 143 HGADIRAQ-DSLGNTVLHILILQPNKTFACQMYNLLLSYDG------------------- 182
Query: 507 EERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEI 566
+ V + + + +G +
Sbjct: 183 ------------------------------GDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212
Query: 567 VDLLLDNGADVN 578
L+ +
Sbjct: 213 FQHLMQKRKHIA 224
Score = 52.2 bits (126), Expect = 1e-07
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 11/77 (14%)
Query: 58 TLLCSAVWDNK----IREVEFLLSTGDHDVNEKLQ------DGRTALYMAILQGLYKMVT 107
T+L + + LLS + K G T +A ++G M
Sbjct: 156 TVLHILILQPNKTFACQMYNLLLSYDG-GDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ 214
Query: 108 LLIHHGANVNDRDEKGY 124
L+ ++ +
Sbjct: 215 HLMQKRKHIAAAHHHHH 231
Score = 41.1 bits (97), Expect = 6e-04
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 584 GFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+ L +A + + + + L G + G+T L A N + +L
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRG-AMGETALHIAALYDNLEAAMVL 56
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 124 bits (313), Expect = 4e-33
Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 16/164 (9%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
L A + V+ L + + + T L+ A +V L+ HGA+V+
Sbjct: 10 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP-ILAVSANMSEDSTDTNE 176
+D+ G PLH AC G+ + + L+ A V TP A + E
Sbjct: 70 AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY-------E 122
Query: 177 IISMLIENGANVREKMPFTD---FSPLHFAVVKKNLSVVELLIK 217
I +L+++GA+ +K + +PL + + +LL
Sbjct: 123 ICKLLLQHGADPTKK----NRDGNTPLDLV-KDGDTDIQDLLRG 161
Score = 115 bits (290), Expect = 6e-30
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 19/147 (12%)
Query: 82 DVNEKLQDGRTALYMAILQGLYKMVTLLI-HHGANVNDRDEKGYTPLHLACYLGNKNIVK 140
N + L A G + V L N D + + TPLH A ++V+
Sbjct: 3 MGNS---EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVE 59
Query: 141 FLLSKKADVRAKCSMMVTP-ILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTD--- 196
+LL ADV AK + P A S E+ +L+++GA V D
Sbjct: 60 YLLQHGADVHAKDKGGLVPLHNACSYG-------HYEVAELLVKHGAVVNVA----DLWK 108
Query: 197 FSPLHFAVVKKNLSVVELLIKCKADTN 223
F+PLH A K + +LL++ AD
Sbjct: 109 FTPLHEAAAKGKYEICKLLLQHGADPT 135
Score = 93.6 bits (234), Expect = 2e-22
Identities = 43/178 (24%), Positives = 64/178 (35%), Gaps = 22/178 (12%)
Query: 113 GANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKK-ADVRAKCSMMVTP-ILAVSANMSED 170
GA N + L A G+ VK L + + + R TP A N
Sbjct: 1 GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRV-- 55
Query: 171 STDTNEIISMLIENGANVREKMPFTD---FSPLHFAVVKKNLSVVELLIKCKADTNLIVK 227
++ L+++GA+V K D PLH A + V ELL+K A N+
Sbjct: 56 -----SVVEYLLQHGADVHAK----DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL 106
Query: 228 VNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVK 285
P L A +I + L D + + D N+ L G+ I +L
Sbjct: 107 WKFTP-LHEAAAKGKYEICK-LLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRG 161
Score = 88.6 bits (221), Expect = 1e-20
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
L +A E L+ G VN T L+ A +G Y++ LL+ HGA+
Sbjct: 77 VPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT 135
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKA 147
++ G TPL L G+ +I L A
Sbjct: 136 KKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164
Score = 88.2 bits (220), Expect = 1e-20
Identities = 45/193 (23%), Positives = 68/193 (35%), Gaps = 45/193 (23%)
Query: 425 RSALQYACKHKNNIEMVKLLL-LHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGA 483
L A K ++E VK L + + D + PL A +V+ L +GA
Sbjct: 9 DRQLLEAAK-AGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQHGA 66
Query: 484 QIDKENYLKNKE-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKK 536
+ K+K A H ++ +LL
Sbjct: 67 DVHA----KDKGGLVPLHNACSYGH--------YEVAELL-------------------- 94
Query: 537 NIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHS 596
++ GA VNV+ + + L A KG EI LLL +GAD K+ G T L +
Sbjct: 95 -VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK--DG 151
Query: 597 NDNIVRKLLHHGA 609
+ +I L A
Sbjct: 152 DTDIQDLLRGDAA 164
Score = 82.8 bits (206), Expect = 9e-19
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
++ GA V+ + L G+ E+ +LL+ +GA VN FT LH A
Sbjct: 62 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 121
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+ I + LL HGA K+ + G TPL + DI DLL
Sbjct: 122 E-ICKLLLQHGADPTKKN-RDGNTPL-DLVKDGDTDIQDLL 159
Score = 81.3 bits (202), Expect = 3e-18
Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 63/216 (29%)
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
L A ++ V+ V+ ++ + +G ++ LH A + +V+ L++ D++A+
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Query: 294 NRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQ 353
++ L P+ A G H VAE L++ +
Sbjct: 72 DKGGLVPLHNACSYG--HYEVAELLVKHGA------------------------------ 99
Query: 354 IKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAF 413
+N TPL AA + K L+Q GA+
Sbjct: 100 ----------------VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT-------- 135
Query: 414 ISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGA 449
++ D + L + ++ LL A
Sbjct: 136 ---KKNRD--GNTPLDLVK--DGDTDIQDLLRGDAA 164
Score = 80.1 bits (199), Expect = 9e-18
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
N TPL FAA + + +YL+Q GA+V+ + D L
Sbjct: 34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-------------AKDKGGLVPLH 80
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
AC + E+ +LL+ HGA VN K PL A G ++I K L +GA K+N
Sbjct: 81 NAC-SYGHYEVAELLVKHGAVVNVADLW-KFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138
Score = 80.1 bits (199), Expect = 9e-18
Identities = 46/224 (20%), Positives = 75/224 (33%), Gaps = 65/224 (29%)
Query: 261 DGDLNSLLHKACHVGNLQIVQMLVKRK-FDINAQNRYFLPPMFFAIGMGRKHTHVAEYLL 319
+ + + L +A G+++ V+ L + + P+ FA G V EYLL
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYN--RVSVVEYLL 62
Query: 320 QQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMI 379
Q + +++A+ +
Sbjct: 63 QHGA----------------------------------------------DVHAKDKGGL 76
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
PL A + + A+ L++ GA VN +D + L A K E
Sbjct: 77 VPLHNACSYGHYEVAELLVKHGAVVN-------------VADLWKFTPLHEAAA-KGKYE 122
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGA 483
+ KLLL HGAD N+ PL + + GD I L+ A
Sbjct: 123 ICKLLLQHGADPTKK-NRDGNTPLDLV-KDGDTDIQDLLRGDAA 164
Score = 79.4 bits (197), Expect = 2e-17
Identities = 46/208 (22%), Positives = 75/208 (36%), Gaps = 48/208 (23%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLI-QKGANVNLTETQKAFISDARSSDFCFRSAL 428
N+E D LL AAK D+++ K L + N + + L
Sbjct: 3 MGNSEAD---RQLLEAAKAGDVETVKKLCTVQSVNCR-------------DIEGRQSTPL 46
Query: 429 QYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKE 488
+A + N + +V+ LL HGADV+ +K PL A G +++ + L +GA ++
Sbjct: 47 HFAAGY-NRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA 104
Query: 489 NYLKNKEAA-RIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVS 547
+ K A KY+ K ++ GA
Sbjct: 105 D--LWKFTPLHEA-------------------------AAKGKYEICKLLLQHGADPTKK 137
Query: 548 SERRGSALIYVAWKGYEEIVDLLLDNGA 575
+ + L V G +I DLL + A
Sbjct: 138 NRDGNTPLDLVK-DGDTDIQDLLRGDAA 164
Score = 78.2 bits (194), Expect = 5e-17
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 526 VRSNKYDEVKKNIEDGAC-VNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATG 584
++ + VKK + R+ + L + A +V+ LL +GADV+ K G
Sbjct: 16 AKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG 75
Query: 585 FTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
LH AC + + + L+ HGA ++ D TPL A A +I LL
Sbjct: 76 LVPLHNACSYGHYE-VAELLVKHGAVVNVAD-LWKFTPLHEAAAKGKYEICKLL 127
Score = 63.6 bits (156), Expect = 5e-12
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 541 GACVNVSSERRGSALIYVAWKGYEEIVDLLLD-NGADVNFKSATGFTALHMACRFHSNDN 599
GA N L+ A G E V L + T LH A ++
Sbjct: 1 GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS- 56
Query: 600 IVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+V LL HGA KD K G PL +A + + ++ +LL
Sbjct: 57 VVEYLLQHGADVHAKD-KGGLVPLHNACSYGHYEVAELL 94
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 124 bits (314), Expect = 8e-33
Identities = 41/203 (20%), Positives = 85/203 (41%), Gaps = 14/203 (6%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
+ L A + K+ +L V++ D +G TPL++A + + I K L+ + AD
Sbjct: 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Query: 149 VRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGA-NVREKMPFTDFSPLHFAVVKK 207
+ + S+ +P L A EI++ ++++ ++ + + + L A K
Sbjct: 65 INLQNSISDSPYLYAGAQGRT------EILAYMLKHATPDLNKHNRY-GGNALIPAAEKG 117
Query: 208 NLSVVELLIKC-KADTNLIVKVNQEPLLFFAIESNSVK----IVEAFLNSKNFDVSISDG 262
++ V+LL++ + D + L+ + IV+ L D SI D
Sbjct: 118 HIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK-LLMENGADQSIKDN 176
Query: 263 DLNSLLHKACHVGNLQIVQMLVK 285
+ + A G +I ++L +
Sbjct: 177 SGRTAMDYANQKGYTEISKILAQ 199
Score = 117 bits (296), Expect = 2e-30
Identities = 38/207 (18%), Positives = 83/207 (40%), Gaps = 23/207 (11%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
LL +A + + E L T V+E +G T L +A+ ++ LI GA++N
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTY-QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKA-DVRAKCSMMVTPILAVSANMSEDSTDTNE 176
++ +P A G I+ ++L D+ ++ + +
Sbjct: 67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI------D 120
Query: 177 IISMLIENG-ANVREKMPFTD---FSPLHFAVVKKN-----LSVVELLIKCKADTNLIVK 227
+ +L+E+G ++ + + ++ L AV + +V+LL++ AD ++
Sbjct: 121 NVKLLLEDGREDIDFQ----NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDN 176
Query: 228 VNQEPLLFFAIESNSVKIVEAFLNSKN 254
+ + +A + +I + L N
Sbjct: 177 SGRTA-MDYANQKGYTEISK-ILAQYN 201
Score = 105 bits (265), Expect = 3e-26
Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 37/221 (16%)
Query: 425 RSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQ 484
+ L+ A + ++ ++ ++L V++ + PL +A+ + D +I K L + GA
Sbjct: 7 GALLEAANQ-RDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Query: 485 IDKENYLKNKEAA-RIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGAC 543
I+ +N ++ A + + + ++
Sbjct: 65 INLQN--SISDSPYLYA-------------------------GAQGRTEILAYMLKHATP 97
Query: 544 -VNVSSERRGSALIYVAWKGYEEIVDLLLDNG-ADVNFKSATGFTALHMACRFHSNDN-- 599
+N + G+ALI A KG+ + V LLL++G D++F++ G+TAL A +
Sbjct: 98 DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157
Query: 600 --IVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
IV+ L+ +GA +KD +G+T + +A +I +L
Sbjct: 158 QDIVKLLMENGADQSIKD-NSGRTAMDYANQKGYTEISKIL 197
Score = 103 bits (259), Expect = 2e-25
Identities = 38/210 (18%), Positives = 75/210 (35%), Gaps = 16/210 (7%)
Query: 119 RDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEII 178
+ + L A K + + L V + TP+ N EI
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDI------EIA 55
Query: 179 SMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKA-DTNLIVKVNQEPLLFFA 237
LI+ GA++ + SP +A + ++ ++K D N + L A
Sbjct: 56 KALIDRGADINLQNSI-SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA-LIPA 113
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHV-----GNLQIVQMLVKRKFDINA 292
E + V+ L D+ + + L +A + IV++L++ D +
Sbjct: 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173
Query: 293 QNRYFLPPMFFAIGMGRKHTHVAEYLLQQD 322
++ M +A G +T +++ L Q +
Sbjct: 174 KDNSGRTAMDYANQKG--YTEISKILAQYN 201
Score = 94.8 bits (237), Expect = 2e-22
Identities = 50/241 (20%), Positives = 84/241 (34%), Gaps = 61/241 (25%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
L A + + + L V+ D + L A H N+IE
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVD-------------EVDTEGNTPLNIAV-HNNDIE 53
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE---- 495
+ K L+ GAD+N ++ P A G +I+ + + D N+
Sbjct: 54 IAKALIDRGADINLQNSI-SDSPYLYAGAQGRTEILAYMLKHAT-PDLN--KHNRYGGNA 109
Query: 496 ---AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDG-ACVNVSSERR 551
AA H LL +EDG ++ ++
Sbjct: 110 LIPAAEKGH--------IDNVKLL---------------------LEDGREDIDFQNDFG 140
Query: 552 GSALIYVAW-----KGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLH 606
+ALI + Y++IV LL++NGAD + K +G TA+ A + + I + L
Sbjct: 141 YTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTE-ISKILAQ 199
Query: 607 H 607
+
Sbjct: 200 Y 200
Score = 85.6 bits (213), Expect = 3e-19
Identities = 50/255 (19%), Positives = 90/255 (35%), Gaps = 67/255 (26%)
Query: 229 NQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKF 288
LL A + ++ K+ E L + V D + N+ L+ A H +++I + L+ R
Sbjct: 5 EVGALLEAANQRDTKKVKE-ILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63
Query: 289 DINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKV 348
DIN QN P +A G T + Y+L+ + +
Sbjct: 64 DINLQNSISDSPYLYAGAQG--RTEILAYMLKHATPD----------------------- 98
Query: 349 MSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKG-ANVNLT 407
+N L+ AA+ + + K L++ G +++
Sbjct: 99 ----------------------LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID-- 134
Query: 408 ETQKAFISDARSSDFCFRSALQYACKH----KNNIEMVKLLLLHGADVNDTSNKPKQKPL 463
+ +AL A + ++VKLL+ +GAD + N + +
Sbjct: 135 -----------FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNS-GRTAM 182
Query: 464 AVAIQSGDFQIVKEL 478
A Q G +I K L
Sbjct: 183 DYANQKGYTEISKIL 197
Score = 81.3 bits (202), Expect = 8e-18
Identities = 50/218 (22%), Positives = 82/218 (37%), Gaps = 44/218 (20%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
++ + + D T ++ + TPL A + D++ AK LI +GA++NL
Sbjct: 20 KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ----------- 68
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGA-DVNDTSNKPKQKPLAVAIQSGDFQIVKE 477
+ S YA + E++ +L H D+N N+ L A + G VK
Sbjct: 69 --NSISDSPYLYAGA-QGRTEILAYMLKHATPDLNKH-NRYGGNALIPAAEKGHIDNVKL 124
Query: 478 LQNYG-AQIDKENYLKN---KEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDE 533
L G ID +N EA + + + I LL
Sbjct: 125 LLEDGREDIDFQNDFGYTALIEAVGLREGN---QLYQDIVKLL----------------- 164
Query: 534 VKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLL 571
+E+GA ++ +A+ Y KGY EI +L
Sbjct: 165 ----MENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Score = 79.4 bits (197), Expect = 4e-17
Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 70/238 (29%)
Query: 259 ISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYL 318
+ ++ +LL A ++ ++L + ++ + P+ A+ +A+ L
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNN--DIEIAKAL 58
Query: 319 LQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDM 378
+ + + +IN +
Sbjct: 59 IDRGA----------------------------------------------DINLQNSIS 72
Query: 379 ITPLLFAAKHCDLQSAKYLIQKGA-NVNLTETQKAFISDARSSDFCFRSALQYACKHKNN 437
+P L+A + Y+++ ++N +AL A + +
Sbjct: 73 DSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYG-------------GNALIPAAEK-GH 118
Query: 438 IEMVKLLLLHG-ADVNDTSNKPKQKPLAVAIQSGDFQ-----IVKELQNYGAQIDKEN 489
I+ VKLLL G D++ N L A+ + IVK L GA ++
Sbjct: 119 IDNVKLLLEDGREDIDFQ-NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKD 175
Score = 40.1 bits (95), Expect = 0.001
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 580 KSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
K+ L A + + + L D D G TPL A + +I L
Sbjct: 2 KTYEVGALLEAANQRDTKK-VKEILQDTTYQVDEVD-TEGNTPLNIAVHNNDIEIAKAL 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 123 bits (312), Expect = 1e-32
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 14/166 (8%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L A ++ L+ D + +K +G TAL A+ + L+ G+NVN
Sbjct: 37 TPLMVACMLGMENAIDKLVENFD-KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN 95
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEI 177
+D G TPL + G + FLL A+V + TP++ S EI
Sbjct: 96 TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS------EI 149
Query: 178 ISMLIENGANVREKMPFTD---FSPLHFAVVKKNLSVVELLIKCKA 220
+ L+E GA++ + D + A + V+++ + +
Sbjct: 150 VKKLLELGADISAR----DLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 120 bits (304), Expect = 1e-31
Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 22/192 (11%)
Query: 66 DNKIREVEFLLS------TGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDR 119
D VE + D N + RT L +A + G+ + L+ + + D+
Sbjct: 5 DKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK 64
Query: 120 DEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP-ILAVSANMSEDSTDTNEII 178
D +G T L A I + LLSK ++V K TP + ++ S E+
Sbjct: 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYS-------EMS 117
Query: 179 SMLIENGANVREKMPFTD---FSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLF 235
L+E+GANV ++ + +PL A +V+ L++ AD +
Sbjct: 118 YFLLEHGANVNDR----NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA-EA 172
Query: 236 FAIESNSVKIVE 247
A ++++
Sbjct: 173 SARIFGRQEVIK 184
Score = 107 bits (269), Expect = 8e-27
Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 50/236 (21%)
Query: 84 NEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLL 143
+ ++G + + + + + L N RD TPL +AC LG +N + L+
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAIDKLV 55
Query: 144 SKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFA 203
+ K T ++ N I L+ G+NV K +PL ++
Sbjct: 56 ENFDKLEDKDIEGSTALIWAVKNNRL------GIAEKLLSKGSNVNTKDFS-GKTPLMWS 108
Query: 204 VVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGD 263
++ + L++ A+ +N +N +G
Sbjct: 109 IIFGYSEMSYFLLEHGAN----------------------------VNDRN-----LEG- 134
Query: 264 LNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLL 319
+ L A G +IV+ L++ DI+A++ L A G V +
Sbjct: 135 -ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFG--RQEVIKIFT 187
Score = 90.9 bits (227), Expect = 4e-21
Identities = 43/250 (17%), Positives = 82/250 (32%), Gaps = 70/250 (28%)
Query: 229 NQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKF 288
N E + E + + ++ N ++ S + L AC +G + LV+
Sbjct: 7 NGEIVEKIKDEKSINQNLDFLRNYRD-----SYN--RTPLMVACMLGMENAIDKLVENFD 59
Query: 289 DINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKV 348
+ ++ + +A+ +AE LL + S
Sbjct: 60 KLEDKDIEGSTALIWAVKNN--RLGIAEKLLSKGS------------------------- 92
Query: 349 MSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTE 408
N+N + TPL+++ + + +L++ GANVN
Sbjct: 93 ---------------------NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN--- 128
Query: 409 TQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQ 468
+ + L A K+ E+VK LL GAD++ + A A
Sbjct: 129 ----------DRNLEGETPLIVASKY-GRSEIVKKLLELGADISAR-DLTGLTAEASARI 176
Query: 469 SGDFQIVKEL 478
G +++K
Sbjct: 177 FGRQEVIKIF 186
Score = 89.8 bits (224), Expect = 9e-21
Identities = 37/241 (15%), Positives = 78/241 (32%), Gaps = 53/241 (21%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
+++ G+ + Q+ +L + N T L
Sbjct: 3 HMDKNGE---IVEKIKDEKSINQNLDFLRNYRDSYNRT-------------------PLM 40
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
AC + L+ + + D + L A+++ I ++L + G+ ++ ++
Sbjct: 41 VACM-LGMENAIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD 98
Query: 490 YLKNKEAA-RIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSS 548
+ + + + + +E GA VN +
Sbjct: 99 --FSGKTPLMWS-------------------------IIFGYSEMSYFLLEHGANVNDRN 131
Query: 549 ERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHG 608
+ LI + G EIV LL+ GAD++ + TG TA A F + +++
Sbjct: 132 LEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE-VIKIFTEVR 190
Query: 609 A 609
Sbjct: 191 R 191
Score = 79.4 bits (197), Expect = 4e-17
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 15/137 (10%)
Query: 515 LLKLNLDFLKN-------------VRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWK 561
+ NLDFL+N + + K +E+ + +ALI+
Sbjct: 19 SINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKN 78
Query: 562 GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKT 621
I + LL G++VN K +G T L + F ++ + LL HGA + ++ G+T
Sbjct: 79 NRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE-MSYFLLEHGANVNDRN-LEGET 136
Query: 622 PLKHAEAGKNRDIIDLL 638
PL A +I+ L
Sbjct: 137 PLIVASKYGRSEIVKKL 153
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 120 bits (303), Expect = 6e-32
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 11/159 (6%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
L A + EV L++ G G + L++A G + +L+ G + +
Sbjct: 4 KKLLEAARAGQDDEVRILMANG-APFTTD-WLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP-ILAVSANMSEDSTDTNE 176
R + TPLH+A G+ NIV+ LL ADV AK + +T A N E
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN-------HQE 114
Query: 177 IISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELL 215
++ +LI+ GA+V + F + ++ N + E+L
Sbjct: 115 VVELLIKYGADVHTQSKF-CKTAFDISIDNGNEDLAEIL 152
Score = 114 bits (289), Expect = 6e-30
Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 17/163 (10%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
D L A G V +L+ +GA D G +PLHLA G+ + + LL
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 149 VRAKCSMMVTP-ILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTD---FSPLHFAV 204
A+ + TP +A S I+ +L+++GA+V K D + LH+A
Sbjct: 60 RDARTKVDRTPLHMAASEG-------HANIVEVLLKHGADVNAK----DMLKMTALHWAT 108
Query: 205 VKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVE 247
+ VVELLIK AD + K + +I++ + + E
Sbjct: 109 EHNHQEVVELLIKYGADVHTQSKFCKTA-FDISIDNGNEDLAE 150
Score = 88.2 bits (220), Expect = 1e-20
Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 12/162 (7%)
Query: 123 GYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP-ILAVSANMSEDSTDTNEIISML 181
L A G + V+ L++ A +P LA +L
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGT-SPLHLAAQYGH-------FSTTEVL 53
Query: 182 IENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESN 241
+ G + + D +PLH A + + ++VE+L+K AD N + L +A E N
Sbjct: 54 LRAGVSRDARTKV-DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTA-LHWATEHN 111
Query: 242 SVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQML 283
++VE L DV + + GN + ++L
Sbjct: 112 HQEVVE-LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 84.4 bits (210), Expect = 2e-19
Identities = 41/182 (22%), Positives = 69/182 (37%), Gaps = 33/182 (18%)
Query: 460 QKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKN--KEAARIAHSTTELEERKKINDLLK 517
K L A ++G V+ L GA + + AA+ H ++L
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGH--------FSTTEVL- 53
Query: 518 LNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADV 577
+ G + ++ + L A +G+ IV++LL +GADV
Sbjct: 54 --------------------LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 578 NFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDL 637
N K TALH A + + +V L+ +GA + K KT + N D+ ++
Sbjct: 94 NAKDMLKMTALHWATEHNHQE-VVELLIKYGADVHTQS-KFCKTAFDISIDNGNEDLAEI 151
Query: 638 LH 639
L
Sbjct: 152 LQ 153
Score = 78.2 bits (194), Expect = 3e-17
Identities = 44/217 (20%), Positives = 74/217 (34%), Gaps = 64/217 (29%)
Query: 263 DLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQD 322
DL L +A G V++L+ + P+ A G H E LL+
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYG--HFSTTEVLLRAG 57
Query: 323 SINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPL 382
+ +A TPL
Sbjct: 58 V----------------------------------------------SRDARTKVDRTPL 71
Query: 383 LFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVK 442
AA + L++ GA+VN + D +AL +A +H N+ E+V+
Sbjct: 72 HMAASEGHANIVEVLLKHGADVN-------------AKDMLKMTALHWATEH-NHQEVVE 117
Query: 443 LLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQ 479
LL+ +GADV+ S + ++I +G+ + + LQ
Sbjct: 118 LLIKYGADVHTQSKF-CKTAFDISIDNGNEDLAEILQ 153
Score = 77.4 bits (192), Expect = 6e-17
Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 44/195 (22%)
Query: 377 DMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKN 436
D+ LL AA+ + L+ GA +D+ S L A ++
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT--------------TDWLGTSPLHLAAQY-G 45
Query: 437 NIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEA 496
+ ++LL G + K + PL +A G IV+ L +GA ++ ++ K
Sbjct: 46 HFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD--MLKMT 102
Query: 497 A-RIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSAL 555
A A N + V+ I+ GA V+ S+ +A
Sbjct: 103 ALHWA-------------------------TEHNHQEVVELLIKYGADVHTQSKFCKTAF 137
Query: 556 IYVAWKGYEEIVDLL 570
G E++ ++L
Sbjct: 138 DISIDNGNEDLAEIL 152
Score = 70.9 bits (175), Expect = 1e-14
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
+ +PL AA++ + + L++ G + + + R+ L
Sbjct: 27 PFTTDWLGT-SPLHLAAQYGHFSTTEVLLRAGVSRD-------------ARTKVDRTPLH 72
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
A + + +V++LL HGADVN K L A + ++V+ L YGA + ++
Sbjct: 73 MAA-SEGHANIVEVLLKHGADVNAKDML-KMTALHWATEHNHQEVVELLIKYGADVHTQS 130
Score = 37.4 bits (88), Expect = 0.004
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 584 GFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
L A R +D VR L+ +GA + D G +PL A + ++L
Sbjct: 2 LGKKLLEAARAGQDD-EVRILMANGAPFT-TD-WLGTSPLHLAAQYGHFSTTEVL 53
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 118 bits (298), Expect = 6e-31
Identities = 35/187 (18%), Positives = 63/187 (33%), Gaps = 17/187 (9%)
Query: 50 SSAKSVELTLLCSAVWDNKIREVEFLLSTGD--HDVNEKLQDGRTALYMAILQGLYKMVT 107
S+A S E + +A + L G + K L + YK+
Sbjct: 1 SNAMS-EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISM 59
Query: 108 LLIHHGANVNDRDEKGYTPLHLACYLGNKNI------VKFLLSKKADVRAKCSMMVTPIL 161
LI+ GA++ R ++G T G +I K L K AD+ A +
Sbjct: 60 FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119
Query: 162 AVSANMSEDSTDTNEIISMLI-ENGANVREKMPFTD---FSPLHFAVVKKNLSVVELLIK 217
N D + + ++ ++G + K D + L F + ++++
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIK----DKWGLTALEFVKRCQKPIALKMMED 175
Query: 218 CKADTNL 224
NL
Sbjct: 176 YIKKYNL 182
Score = 108 bits (272), Expect = 2e-27
Identities = 28/213 (13%), Positives = 58/213 (27%), Gaps = 38/213 (17%)
Query: 88 QDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEK---GYTPLHLACYLGNKNIVKFLLS 144
+ A + G Y+ L G + K Y L I FL++
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 145 KKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFS---PLH 201
K AD++++ T + D T T E+ + +E GA++ +
Sbjct: 64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITAL----YKPYKIVVF 119
Query: 202 FAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISD 261
+ + E++ + + + + I D
Sbjct: 120 KNIFNYFVDENEMIP----------------------------LYKLIFSQSGLQLLIKD 151
Query: 262 GDLNSLLHKACHVGNLQIVQMLVKRKFDINAQN 294
+ L ++M+ N +
Sbjct: 152 KWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184
Score = 85.9 bits (213), Expect = 1e-19
Identities = 27/192 (14%), Positives = 54/192 (28%), Gaps = 36/192 (18%)
Query: 459 KQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAHSTTELEERKKINDLLKL 518
+ + ++ A G ++ EL G + + E R KI+ L
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESV--LKSNILYDVLRNNNDEARYKISMFL-- 61
Query: 519 NLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYE------EIVDLLLD 572
I GA + ++ + + G E+ + L+
Sbjct: 62 -------------------INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE 102
Query: 573 NGADVNFKSATGFTALHMACRFHSNDNIVRK------LLHHGAYYDMKDGKTGKTPLKHA 626
GAD+ + + D G +KD K G T L+
Sbjct: 103 KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD-KWGLTALEFV 161
Query: 627 EAGKNRDIIDLL 638
+ + + ++
Sbjct: 162 KRCQKPIALKMM 173
Score = 85.1 bits (211), Expect = 3e-19
Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 9/130 (6%)
Query: 526 VRSNKYDEVKKNIEDGACVNVSSERRG---SALIYVAWKGYEEIVDLLLDNGADVNFKSA 582
Y++ + E G S + L + +I L++ GAD+ ++
Sbjct: 14 AMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK 73
Query: 583 TGFTALHMACRFHSND-----NIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDL 637
G T + ND + + L GA K K + D ++
Sbjct: 74 EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY-KPYKIVVFKNIFNYFVDENEM 132
Query: 638 LHLIDNLFAS 647
+ L +F+
Sbjct: 133 IPLYKLIFSQ 142
Score = 82.8 bits (205), Expect = 2e-18
Identities = 11/88 (12%), Positives = 23/88 (26%), Gaps = 8/88 (9%)
Query: 72 VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMV-------TLLIHHGANVNDRDEKGY 124
+ L G D+ + + ++ I + G + +D+ G
Sbjct: 97 CKIFLEKG-ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGL 155
Query: 125 TPLHLACYLGNKNIVKFLLSKKADVRAK 152
T L +K + K
Sbjct: 156 TALEFVKRCQKPIALKMMEDYIKKYNLK 183
Score = 81.6 bits (202), Expect = 4e-18
Identities = 26/207 (12%), Positives = 57/207 (27%), Gaps = 45/207 (21%)
Query: 425 RSALQYACKHKNNIEMVKLLLLHGADVNDTSNK--PKQKPLAVAIQSGDFQIVKELQNYG 482
+ A E L G + ++ K L ++I L N G
Sbjct: 7 YRTVSAAAM-LGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65
Query: 483 AQIDKENYLKNKE-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVK 535
A I + KE + ++ ++ +
Sbjct: 66 ADIKS----RTKEGTTLFFPLFQGGG--NDITGTTELCKIF------------------- 100
Query: 536 KNIEDGACVNVSSERRGSALIYVAWKGYEEIVD-------LLLDNGADVNFKSATGFTAL 588
+E GA + + + + + + + + +G + K G TAL
Sbjct: 101 --LEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158
Query: 589 HMACRFHSNDNIVRKLLHHGAYYDMKD 615
R ++ + + Y++K+
Sbjct: 159 EFVKRCQKPI-ALKMMEDYIKKYNLKE 184
Score = 79.7 bits (197), Expect = 3e-17
Identities = 26/210 (12%), Positives = 51/210 (24%), Gaps = 43/210 (20%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
+ AA + L +KG + + L+ +
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNI----------LYDVLRNNNDE-ARYK 56
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSG------DFQIVKELQNYGAQIDKENYLKN 493
+ L+ GAD+ K Q G ++ K GA I
Sbjct: 57 ISMFLINKGADIKSR-TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK 115
Query: 494 ---KEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSER 550
+ + E + L+ + G + + +
Sbjct: 116 IVVFKNIFNYF--VDENEMIPLYKLI--------------------FSQSGLQLLIKDKW 153
Query: 551 RGSALIYVAWKGYEEIVDLLLDNGADVNFK 580
+AL +V + ++ D N K
Sbjct: 154 GLTALEFVKRCQKPIALKMMEDYIKKYNLK 183
Score = 73.6 bits (181), Expect = 3e-15
Identities = 23/269 (8%), Positives = 59/269 (21%), Gaps = 95/269 (35%)
Query: 195 TDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKN 254
+++ + A + L + + V + +L+
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDV----------------- 45
Query: 255 FDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHV 314
L +I L+ + DI ++ + F G
Sbjct: 46 -------------LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGND--- 89
Query: 315 AEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAE 374
I ++ K +++ +I A
Sbjct: 90 ---------------------------------------ITGTTELCKIFLEKGADITAL 110
Query: 375 GDDMITPLLFAAKHCDLQSAK-------YLIQKGANVNLTETQKAFISDARSSDFCFRSA 427
+ + + + Q G + + D +A
Sbjct: 111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK-------------DKWGLTA 157
Query: 428 LQYACKHKNNIEMVKLLLLHGADVNDTSN 456
L++ + +K++ + N N
Sbjct: 158 LEFVKR-CQKPIALKMMEDYIKKYNLKEN 185
Score = 55.8 bits (135), Expect = 4e-09
Identities = 8/70 (11%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 58 TLLCSAVWDNKIRE------VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIH 111
++ +++ + E + + S + K + G TAL + ++
Sbjct: 116 IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175
Query: 112 HGANVNDRDE 121
+ N ++
Sbjct: 176 YIKKYNLKEN 185
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 116 bits (294), Expect = 7e-31
Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 7/141 (4%)
Query: 81 HDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVK 140
++ L A +G + V L+ GA+ N + G P+ + G+ + +
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAE 61
Query: 141 FLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPL 200
LL A+ +T + +A E + + +L GA + + P+
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAA--REGFL---DTLVVLHRAGARLDVCDAW-GRLPV 115
Query: 201 HFAVVKKNLSVVELLIKCKAD 221
A + + + L D
Sbjct: 116 DLAEEQGHRDIARYLHAATGD 136
Score = 98.7 bits (247), Expect = 1e-24
Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
L +A ++ V LL G D N + GR + + + G ++ LL+ HGA N
Sbjct: 14 AGLATAAARGQVETVRQLLEAGA-DPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPN 71
Query: 118 DRDEKGYT-PLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNE 176
D T P+H A G + + L A + + P+ +
Sbjct: 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHR------D 125
Query: 177 IISMLIENGAN 187
I L +
Sbjct: 126 IARYLHAATGD 136
Score = 97.5 bits (244), Expect = 3e-24
Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 44/175 (25%)
Query: 113 GANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP-ILAVSANMSEDS 171
++ L A G V+ LL AD A P + + +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSA---- 57
Query: 172 TDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQE 231
++ +L+ +GA P T P+H A + L + +L + A +
Sbjct: 58 ----QVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-------- 105
Query: 232 PLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKR 286
+ D + A G+ I + L
Sbjct: 106 ---------------------------VCDAWGRLPVDLAEEQGHRDIARYLHAA 133
Score = 84.4 bits (210), Expect = 2e-19
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
I+ G L AA +++ + L++ GA+ N + + R +Q
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-------------ALNRFGRRPIQ 50
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
+ ++ +LLLLHGA+ N +P+ A + G + L GA++D +
Sbjct: 51 VMMM--GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD 108
Score = 79.8 bits (198), Expect = 5e-18
Identities = 23/170 (13%), Positives = 45/170 (26%), Gaps = 44/170 (25%)
Query: 448 GADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE-------AARIA 500
++ LA A G + V++L GA + N+
Sbjct: 2 SPGIH-MLGGSSDAGLATAAARGQVETVRQLLEAGADPNA----LNRFGRRPIQVMMM-- 54
Query: 501 HSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRG-SALIYVA 559
+ + GA N + + A
Sbjct: 55 ----------------------------GSAQVAELLLLHGAEPNCADPATLTRPVHDAA 86
Query: 560 WKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA 609
+G+ + + +L GA ++ A G + +A + +I R L
Sbjct: 87 REGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE-QGHRDIARYLHAATG 135
Score = 78.6 bits (195), Expect = 2e-17
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 541 GACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNI 600
+++ + L A +G E V LL+ GAD N + G + + + +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSA--QV 59
Query: 601 VRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
LL HGA + D T P+ A D + +L
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVL 97
Score = 78.3 bits (194), Expect = 2e-17
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
+ + V++ +E GA N + + G ++ +LLL +GA+ N T
Sbjct: 21 ARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVAELLLLHGAEPNCADPATLT 79
Query: 587 -ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+H A R + + L GA D+ D G+ P+ AE +RDI L
Sbjct: 80 RPVHDAAR-EGFLDTLVVLHRAGARLDVCD-AWGRLPVDLAEEQGHRDIARYL 130
Score = 73.6 bits (182), Expect = 9e-16
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 17/115 (14%)
Query: 370 NINAEGDDMITPLLFAAK-HCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSAL 428
+ NA P+ + A+ L+ GA N + +
Sbjct: 37 DPNALNRFGRRPIQVMMMGSAQV--AELLLLHGAEPNCADPAT------------LTRPV 82
Query: 429 QYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGA 483
A + ++ + +L GA ++ + + P+ +A + G I + L
Sbjct: 83 HDAA-REGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 73.6 bits (182), Expect = 9e-16
Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 64/196 (32%)
Query: 256 DVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVA 315
+ + G ++ L A G ++ V+ L++ D NA NR+ P+ + VA
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM---MGSAQVA 60
Query: 316 EYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEG 375
E LL + N
Sbjct: 61 ELLLLHGA----------------------------------------------EPNCAD 74
Query: 376 DDMIT-PLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
+T P+ AA+ L + L + GA ++ + R + A +
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLD-----------VCDAWG--RLPVDLAEE- 120
Query: 435 KNNIEMVKLLLLHGAD 450
+ + ++ + L D
Sbjct: 121 QGHRDIARYLHAATGD 136
Score = 67.5 bits (166), Expect = 1e-13
Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 28/152 (18%)
Query: 425 RSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQ 484
+ L A + +E V+ LL GAD N N+ ++P+ V + G Q+ + L +GA+
Sbjct: 13 DAGLATAAA-RGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAE 69
Query: 485 IDKENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACV 544
+ + A R D + GA +
Sbjct: 70 PNCADPATLTRPVHDA-------------------------AREGFLDTLVVLHRAGARL 104
Query: 545 NVSSERRGSALIYVAWKGYEEIVDLLLDNGAD 576
+V + +G+ +I L D
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 117 bits (296), Expect = 8e-31
Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 16/164 (9%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
L SA + ++ LL +VN + GRTAL + G ++ L+ GAN +
Sbjct: 7 NELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD 64
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP-ILAVSANMSEDSTDTNE 176
+D G+ +H A G + ++ LL +ADV + + P LA
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG-------HLR 117
Query: 177 IISMLIENGA---NVREKMPFTDFSPLHFAVVKKNLSVVELLIK 217
++ L+++ A R T A + VV L+
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDT---ACDLARLYGRNEVVSLMQA 158
Score = 110 bits (279), Expect = 1e-28
Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 48/200 (24%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
L A +G + +T L+ + NVN ++ G T L + GN I + LL + A+
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN 62
Query: 149 VRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTD---FSPLHFAVV 205
K I + + + L+E A+V + D PLH A
Sbjct: 63 PDLKDRTGFAVIHDAARAGFL------DTLQTLLEFQADVNIE----DNEGNLPLHLAAK 112
Query: 206 KKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLN 265
+ +L VVE L+K A +V + +
Sbjct: 113 EGHLRVVEFLVKHTAS----------------------------------NVGHRNHKGD 138
Query: 266 SLLHKACHVGNLQIVQMLVK 285
+ A G ++V ++
Sbjct: 139 TACDLARLYGRNEVVSLMQA 158
Score = 97.5 bits (244), Expect = 8e-24
Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 11/131 (8%)
Query: 58 TLLCSAVWDNKIRE-VEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
T L N E LL G + + K + G ++ A G + L+ A+V
Sbjct: 40 TALQVMKLGNP--EIARRLLLRG-ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKA-DVRAKCSMMVTPILAVSANMSEDSTDTN 175
N D +G PLHLA G+ +V+FL+ A +V + T
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN------ 150
Query: 176 EIISMLIENGA 186
E++S++ NGA
Sbjct: 151 EVVSLMQANGA 161
Score = 83.6 bits (208), Expect = 6e-19
Identities = 40/209 (19%), Positives = 73/209 (34%), Gaps = 57/209 (27%)
Query: 375 GDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
+ L AA DL+ L+Q NVN + + R+ALQ
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVN-------------AQNGFGRTALQVMK-- 46
Query: 435 KNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNK 494
N E+ + LLL GA+ + ++ + A ++G ++ L + A ++ ++
Sbjct: 47 LGNPEIARRLLLRGANPD-LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI----EDN 101
Query: 495 E-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGAC-VNV 546
E AA+ H ++ + L ++ A V
Sbjct: 102 EGNLPLHLAAKEGH--------LRVVEFL---------------------VKHTASNVGH 132
Query: 547 SSERRGSALIYVAWKGYEEIVDLLLDNGA 575
+ + +A G E+V L+ NGA
Sbjct: 133 RNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 82.0 bits (204), Expect = 2e-18
Identities = 36/217 (16%), Positives = 68/217 (31%), Gaps = 65/217 (29%)
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
L A G+L+ + L++ ++NAQN + + + +A LL + +
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK---LGNPEIARRLLLRGA---- 61
Query: 328 LPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAK 387
N + + + AA+
Sbjct: 62 ------------------------------------------NPDLKDRTGFAVIHDAAR 79
Query: 388 HCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLH 447
L + + L++ A+VN D L A K ++ +V+ L+ H
Sbjct: 80 AGFLDTLQTLLEFQADVN-------------IEDNEGNLPLHLAAKE-GHLRVVEFLVKH 125
Query: 448 GA-DVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGA 483
A +V N +A G ++V +Q GA
Sbjct: 126 TASNVGHR-NHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 80.9 bits (201), Expect = 5e-18
Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 42/184 (22%)
Query: 462 PLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE------AARIAHSTTELEERKKINDL 515
LA A GD + + L ++ +N ++ + +I
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNA----QNGFGRTALQVMKLGN--------PEIARR 55
Query: 516 LKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGA 575
L + GA ++ + + A G+ + + LL+ A
Sbjct: 56 L---------------------LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 576 DVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY-DMKDGKTGKTPLKHAEAGKNRDI 634
DVN + G LH+A + +V L+ H A ++ G T A ++
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLR-VVEFLVKHTASNVGHRN-HKGDTACDLARLYGRNEV 152
Query: 635 IDLL 638
+ L+
Sbjct: 153 VSLM 156
Score = 74.7 bits (185), Expect = 6e-16
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 548 SERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHH 607
+E G+ L A +G E + LL N +VN ++ G TAL + + I R+LL
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP--EIARRLLLR 59
Query: 608 GAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
GA D+KD +TG + A D + L
Sbjct: 60 GANPDLKD-RTGFAVIHDAARAGFLDTLQTL 89
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 115 bits (292), Expect = 2e-30
Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 9/160 (5%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
L A ++EV LL + + G+TAL + + G + L+ GA+ N
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEI 177
+D G +P+H A G + +K L+ ADV PI +
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT------AV 116
Query: 178 ISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIK 217
+S L +++ + +PL A+ + +V++L
Sbjct: 117 VSFLAA-ESDLHRRDAR-GLTPLELALQRGAQDLVDILQG 154
Score = 107 bits (269), Expect = 3e-27
Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 17/166 (10%)
Query: 90 GRTALYMAILQGLYKMVT-LLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
L A +G + V LL + + + G T L + + G+ I LL + A
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60
Query: 149 VRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTD---FSPLHFAVV 205
+ + +P+ + + + +L+E+GA+V D P+H AV
Sbjct: 61 PNVQDTSGTSPVHDAARTGFL------DTLKVLVEHGADVNVP----DGTGALPIHLAVQ 110
Query: 206 KKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLN 251
+ + +VV L ++D + P L A++ + +V+
Sbjct: 111 EGHTAVVSFLAA-ESDLHRRDARGLTP-LELALQRGAQDLVDILQG 154
Score = 84.4 bits (210), Expect = 2e-19
Identities = 38/204 (18%), Positives = 66/204 (32%), Gaps = 53/204 (25%)
Query: 122 KGYTPLHLACYLGNKNIVKFLLSKK-ADVRAKCSMMVTPILAVSANMSEDSTDTNEIISM 180
+ L A G+ V+ LL ++ A T L V S I
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA-LQVMMFGST------AIALE 53
Query: 181 LIENGANVREKMPFTD---FSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFA 237
L++ GA+ + D SP+H A L +++L++ AD N
Sbjct: 54 LLKQGASPNVQ----DTSGTSPVHDAARTGFLDTLKVLVEHGADVN-------------- 95
Query: 238 IESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYF 297
+ DG +H A G+ +V L + D++ ++
Sbjct: 96 ---------------------VPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARG 133
Query: 298 LPPMFFAIGMGRKHTHVAEYLLQQ 321
L P+ A+ G + + L
Sbjct: 134 LTPLELALQRG--AQDLVDILQGH 155
Score = 81.7 bits (203), Expect = 2e-18
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
++ GA NV S + A G+ + + +L+++GADVN TG +H+A +
Sbjct: 55 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 114
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+V L + +D G TPL+ A +D++D+L
Sbjct: 115 A-VV-SFLAAESDLHRRD-ARGLTPLELALQRGAQDLVDIL 152
Score = 75.5 bits (187), Expect = 3e-16
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 527 RSNKYDEVKKNIE-DGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGF 585
EV++ + + + + +AL V G I LL GA N + +G
Sbjct: 11 ARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTSGT 69
Query: 586 TALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+ +H A R D ++ L+ HGA ++ D TG P+ A + ++ L
Sbjct: 70 SPVHDAARTGFLD-TLKVLVEHGADVNVPD-GTGALPIHLAVQEGHTAVVSFL 120
Score = 72.1 bits (178), Expect = 6e-15
Identities = 30/202 (14%), Positives = 62/202 (30%), Gaps = 60/202 (29%)
Query: 380 TPLLFAAKHCDLQSAKYLI-QKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNI 438
L AA D+Q + L+ ++ + + + + ++ALQ +
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPD-------------ALNRFGKTALQVMMF--GST 48
Query: 439 EMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE--- 495
+ LL GA N P+ A ++G +K L +GA ++ +
Sbjct: 49 AIALELLKQGASPNVQDTS-GTSPVHDAARTGFLDTLKVLVEHGADVNV----PDGTGAL 103
Query: 496 ----AARIAHS-TTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSER 550
A + H+ L + ++ R
Sbjct: 104 PIHLAVQEGHTAVVSF--------LAA-----------------------ESDLHRRDAR 132
Query: 551 RGSALIYVAWKGYEEIVDLLLD 572
+ L +G +++VD+L
Sbjct: 133 GLTPLELALQRGAQDLVDILQG 154
Score = 70.9 bits (175), Expect = 1e-14
Identities = 38/214 (17%), Positives = 73/214 (34%), Gaps = 66/214 (30%)
Query: 268 LHKACHVGNLQIVQMLVKRKF-DINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINV 326
L A G++Q V+ L+ R+ +A NR+ + + T +A LL+Q +
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM---FGSTAIALELLKQGA--- 59
Query: 327 NLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAA 386
+ N + +P+ AA
Sbjct: 60 -------------------------------------------SPNVQDTSGTSPVHDAA 76
Query: 387 KHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLL 446
+ L + K L++ GA+VN+ + + A + + + +V L
Sbjct: 77 RTGFLDTLKVLVEHGADVNVPDGTG-------------ALPIHLAVQ-EGHTAVVS-FLA 121
Query: 447 HGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQN 480
+D++ + PL +A+Q G +V LQ
Sbjct: 122 AESDLHRR-DARGLTPLELALQRGAQDLVDILQG 154
Score = 68.2 bits (168), Expect = 1e-13
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 19/121 (15%)
Query: 370 NINAEGDDMITPLLFAAK-HCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSAL 428
+ +A T L + A L+++GA+ N D S +
Sbjct: 28 HPDALNRFGKTALQVMMFGSTAI--ALELLKQGASPN-------------VQDTSGTSPV 72
Query: 429 QYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKE 488
A + ++ +K+L+ HGADVN P+ +A+Q G +V L + + +
Sbjct: 73 HDAAR-TGFLDTLKVLVEHGADVNVPDGT-GALPIHLAVQEGHTAVVSFLAA-ESDLHRR 129
Query: 489 N 489
+
Sbjct: 130 D 130
Score = 67.4 bits (166), Expect = 2e-13
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 550 RRGSALIYVAWKGYEEIVDLLLD-NGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHG 608
R G L A +G + V LL + + G TAL + + I +LL G
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST--AIALELLKQG 58
Query: 609 AYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
A +++D +G +P+ A D + +L
Sbjct: 59 ASPNVQD-TSGTSPVHDAARTGFLDTLKVL 87
Score = 63.6 bits (156), Expect = 5e-12
Identities = 26/214 (12%), Positives = 55/214 (25%), Gaps = 64/214 (29%)
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
L A V+ V L+ + + + L G+ I L+K+ N Q
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQ 64
Query: 294 NRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQ 353
+ P+ A G + L++ +
Sbjct: 65 DTSGTSPVHDAARTG--FLDTLKVLVEHGA------------------------------ 92
Query: 354 IKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAF 413
++N P+ A + +L ++++
Sbjct: 93 ----------------DVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH-------- 127
Query: 414 ISDARSSDFCFRSALQYACKHKNNIEMVKLLLLH 447
D + L+ A + ++V +L H
Sbjct: 128 -----RRDARGLTPLELALQR-GAQDLVDILQGH 155
Score = 42.4 bits (101), Expect = 9e-05
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHH 112
+ AV + V FL + D ++ + G T L +A+ +G +V +L H
Sbjct: 103 LPIHLAVQEGHTAVVSFLAAESD--LHRRDARGLTPLELALQRGAQDLVDILQGH 155
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 115 bits (291), Expect = 3e-30
Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 11/146 (7%)
Query: 80 DHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIV 139
+ ++ L A +G + V L+ GAN N + G P+ + G+ +
Sbjct: 2 EPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVA 60
Query: 140 KFLLSKKADVRAKCSMMVTP--ILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDF 197
+ LL A+ +T A + + +L GA + + +
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFL-------DTLVVLHRAGARLDVRDAW-GR 112
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTN 223
P+ A + V L T
Sbjct: 113 LPVDLAEELGHRDVARYLRAAAGGTR 138
Score = 110 bits (277), Expect = 2e-28
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 17/158 (10%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
L +A ++ EV LL G + N GR + + + G ++ LL+ HGA N
Sbjct: 14 DWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN 71
Query: 118 DRDEKGYT-PLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP-ILAVSANMSEDSTDTN 175
D T P+H A G + + L A + + + P LA
Sbjct: 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR------- 124
Query: 176 EIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVE 213
++ L R + + + +
Sbjct: 125 DVARYLRAAAGGTRGS------NHARIDAAEGPSDIPD 156
Score = 81.4 bits (202), Expect = 3e-18
Identities = 30/198 (15%), Positives = 53/198 (26%), Gaps = 52/198 (26%)
Query: 447 HGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE-------AARI 499
A + +P LA A G + V+ L GA + N
Sbjct: 3 PAAGSSM---EPSADWLATAAARGRVEEVRALLEAGANPNA----PNSYGRRPIQVMMM- 54
Query: 500 AHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRG-SALIYV 558
+ + GA N + +
Sbjct: 55 -----------------------------GSARVAELLLLHGAEPNCADPATLTRPVHDA 85
Query: 559 AWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKT 618
A +G+ + + +L GA ++ + A G + +A + ++ R L G
Sbjct: 86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE-LGHRDVARYLRAAAG------GTR 138
Query: 619 GKTPLKHAEAGKNRDIID 636
G + A DI D
Sbjct: 139 GSNHARIDAAEGPSDIPD 156
Score = 80.6 bits (200), Expect = 6e-18
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 15/119 (12%)
Query: 371 INAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQY 430
+ + L AA ++ + L++ GAN N A +S R +Q
Sbjct: 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPN-----------APNSYG--RRPIQV 51
Query: 431 ACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
+ + +LLLLHGA+ N +P+ A + G + L GA++D +
Sbjct: 52 MMM--GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD 108
Score = 79.1 bits (196), Expect = 2e-17
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
+ +EV+ +E GA N + + V G + +LLL +GA+ N T
Sbjct: 21 ARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCADPATLT 79
Query: 587 -ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+H A R + + L GA D++D G+ P+ AE +RD+ L
Sbjct: 80 RPVHDAAR-EGFLDTLVVLHRAGARLDVRD-AWGRLPVDLAEELGHRDVARYL 130
Score = 77.9 bits (193), Expect = 4e-17
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 72/221 (32%)
Query: 256 DVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVA 315
S+ L A G ++ V+ L++ + NA N Y P+ + MG VA
Sbjct: 6 GSSMEPSA--DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MG--SARVA 60
Query: 316 EYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEG 375
E LL + N
Sbjct: 61 ELLLLHGA----------------------------------------------EPNCAD 74
Query: 376 DDMIT-PLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
+T P+ AA+ L + L + GA ++ R + R + A +
Sbjct: 75 PATLTRPVHDAAREGFLDTLVVLHRAGARLD-----------VRDAWG--RLPVDLAEE- 120
Query: 435 KNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIV 475
+ ++ + L + G I
Sbjct: 121 LGHRDVARYLRAAAGGTR------GSNHARIDAAEGPSDIP 155
Score = 77.5 bits (192), Expect = 5e-17
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+E A S E L A +G E V LL+ GA+ N ++ G + + +
Sbjct: 1 MEPAA--GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSA- 57
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNR-DIIDLLH 639
+ LL HGA + D T P+ H A + D + +LH
Sbjct: 58 -RVAELLLLHGAEPNCADPATLTRPV-HDAAREGFLDTLVVLH 98
Score = 77.5 bits (192), Expect = 6e-17
Identities = 30/211 (14%), Positives = 53/211 (25%), Gaps = 81/211 (38%)
Query: 112 HGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDS 171
A + L A G V+ LL A+ A
Sbjct: 3 PAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAP------------------- 41
Query: 172 TDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQE 231
++ P+ + + V ELL+ A+ N
Sbjct: 42 -NSY--------------------GRRPIQVMM-MGSARVAELLLLHGAEPN-------- 71
Query: 232 PLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSL-LHKACHVGNLQIVQMLVKRKFDI 290
+D + +H A G L + +L + +
Sbjct: 72 ---------------------------CADPATLTRPVHDAAREGFLDTLVVLHRAGARL 104
Query: 291 NAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQ 321
+ ++ + P+ A +G H VA YL
Sbjct: 105 DVRDAWGRLPVDLAEELG--HRDVARYLRAA 133
Score = 76.4 bits (189), Expect = 2e-16
Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 28/163 (17%)
Query: 427 ALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQID 486
L A + +E V+ LL GA+ N N ++P+ V + G ++ + L +GA+ +
Sbjct: 15 WLATAA-ARGRVEEVRALLEAGANPN-APNSYGRRPIQVMMM-GSARVAELLLLHGAEPN 71
Query: 487 KENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNV 546
+ A R D + GA ++V
Sbjct: 72 CADPATLTRPVHDA-------------------------AREGFLDTLVVLHRAGARLDV 106
Query: 547 SSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALH 589
+ G+ ++ L + A
Sbjct: 107 RDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149
Score = 75.2 bits (186), Expect = 5e-16
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 19/133 (14%)
Query: 370 NINAEGDDMITPLLFAAK-HCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSAL 428
N NA P+ + A+ L+ GA N + +
Sbjct: 37 NPNAPNSYGRRPIQVMMMGSARV--AELLLLHGAEPN------------CADPATLTRPV 82
Query: 429 QYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKE 488
A + ++ + +L GA ++ + + P+ +A + G + + L+
Sbjct: 83 HDAARE-GFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS 140
Query: 489 NYLKNKEAARIAH 501
N + A
Sbjct: 141 N--HARIDAAEGP 151
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 114 bits (288), Expect = 4e-30
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 82 DVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKF 141
D G T L++A ++G V L+ +G++ N +D G+TPLH AC G+ +V+
Sbjct: 3 DPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 142 LLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDF--SP 199
LL KA V +P+ + N +I+ +L+ GA+ F P
Sbjct: 62 LLQHKALVNTTGYQNDSPLHDAAKNGHV------DIVKLLLSYGASRNAV---NIFGLRP 112
Query: 200 LHFAVVKKNLSVVELLIK 217
+ + + S++ L K
Sbjct: 113 VDYTDDESMKSLLLLPEK 130
Score = 107 bits (270), Expect = 1e-27
Identities = 42/131 (32%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
TLL A I VE+LL G D N K G T L+ A G K+V LL+ H A VN
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTP-ILAVSANMSEDSTDTNE 176
+ +PLH A G+ +IVK LLS A A + P +M
Sbjct: 71 TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESM-------KS 123
Query: 177 IISMLIENGAN 187
++ + +N ++
Sbjct: 124 LLLLPEKNESS 134
Score = 85.9 bits (214), Expect = 4e-20
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
V+ +++G+ NV + L G+ ++V+LLL + A VN +
Sbjct: 19 IKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS 78
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
LH A + + + +IV+ LL +GA + + G P+ + + + ++ L
Sbjct: 79 PLHDAAK-NGHVDIVKLLLSYGASRNAVN-IFGLRPVDYTDDESMKSLLLLP 128
Score = 84.4 bits (210), Expect = 1e-19
Identities = 41/213 (19%), Positives = 69/213 (32%), Gaps = 78/213 (36%)
Query: 113 GANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDST 172
G + + +G T LH+A G+ V++LL +D
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDP----------------------- 36
Query: 173 DTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEP 232
NV++ +T PLH A +L VVELL++ KA N
Sbjct: 37 --------------NVKDHAGWT---PLHEACNHGHLKVVELLLQHKALVN--------- 70
Query: 233 LLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINA 292
+ +S LH A G++ IV++L+ NA
Sbjct: 71 --------------------------TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104
Query: 293 QNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSIN 325
N + L P+ + + + +S +
Sbjct: 105 VNIFGLRPVDYTDDES--MKSLLLLPEKNESSS 135
Score = 77.5 bits (192), Expect = 4e-17
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 16/120 (13%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
+ T L A+ D+ S +YL+Q G++ N D + L
Sbjct: 3 DPFTNHRGE-TLLHIASIKGDIPSVEYLLQNGSDPN-------------VKDHAGWTPLH 48
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
AC H ++++V+LLL H A VN T + PL A ++G IVK L +YGA + N
Sbjct: 49 EACNH-GHLKVVELLLQHKALVNTTGYQ-NDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Score = 75.9 bits (188), Expect = 2e-16
Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 43/169 (25%)
Query: 448 GADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNK-------EAARIA 500
G D +N + L +A GD V+ L G+ + K+ EA
Sbjct: 1 GIDPF--TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV----KDHAGWTPLHEACNHG 54
Query: 501 HSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAW 560
H K+ +LL ++ A VN + + S L A
Sbjct: 55 H--------LKVVELL---------------------LQHKALVNTTGYQNDSPLHDAAK 85
Query: 561 KGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA 609
G+ +IV LLL GA N + G + S +++ + +
Sbjct: 86 NGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDD-ESMKSLLLLPEKNES 133
Score = 74.4 bits (184), Expect = 5e-16
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
+ N + TPL A H L+ + L+Q A VN ++ + S L
Sbjct: 35 DPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-------------TTGYQNDSPLH 81
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGA 483
A K ++++VKLLL +GA N N +P+ ++ + +
Sbjct: 82 DAAK-NGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDDESMKSLLLLPEKNES 133
Score = 73.2 bits (181), Expect = 1e-15
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 544 VNVSSERRGS-ALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVR 602
++ + RG L + KG V+ LL NG+D N K G+T LH AC H + +V
Sbjct: 2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACN-HGHLKVVE 60
Query: 603 KLLHHGAYYDMKDGKTGKTPLKHAEAGKNR-DIIDLL 638
LL H A + +PL H A DI+ LL
Sbjct: 61 LLLQHKALVNTTG-YQNDSPL-HDAAKNGHVDIVKLL 95
Score = 65.1 bits (160), Expect = 7e-13
Identities = 31/183 (16%), Positives = 53/183 (28%), Gaps = 62/183 (33%)
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
LH A G++ V+ L++ D N ++ P+ A G H V E LLQ +
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG--HLKVVELLLQHKA---- 67
Query: 328 LPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAK 387
+N G +PL AAK
Sbjct: 68 ------------------------------------------LVNTTGYQNDSPLHDAAK 85
Query: 388 HCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLH 447
+ + K L+ GA+ N + Y ++ ++ L +
Sbjct: 86 NGHVDIVKLLLSYGASRNAVNIFG-------------LRPVDYTD-DESMKSLLLLPEKN 131
Query: 448 GAD 450
+
Sbjct: 132 ESS 134
Score = 60.1 bits (147), Expect = 4e-11
Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 34/155 (21%)
Query: 425 RSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQ 484
+ L A K +I V+ LL +G+D N + PL A G ++V+ L + A
Sbjct: 11 ETLLHIASI-KGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 485 IDKENYLKNK---EAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDG 541
++ Y + +AA+ H I LL + G
Sbjct: 69 VNTTGYQNDSPLHDAAKNGH--------VDIVKLL---------------------LSYG 99
Query: 542 ACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGAD 576
A N + + Y + + ++ L N +
Sbjct: 100 ASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134
Score = 53.6 bits (130), Expect = 8e-09
Identities = 29/205 (14%), Positives = 57/205 (27%), Gaps = 83/205 (40%)
Query: 199 PLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVS 258
LH A +K ++ VE L++ +D N K+
Sbjct: 13 LLHIASIKGDIPSVEYLLQNGSD----------------------------PNVKDHAGW 44
Query: 259 ISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYL 318
LH+AC+ G+L++V++L++ K +N P+ A G H + + L
Sbjct: 45 TP-------LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNG--HVDIVKLL 95
Query: 319 LQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDM 378
L + + NA
Sbjct: 96 LSYGA----------------------------------------------SRNAVNIFG 109
Query: 379 ITPLLFAAKHCDLQSAKYLIQKGAN 403
+ P+ + + ++
Sbjct: 110 LRPVDYTDDESMKSLLLLPEKNESS 134
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 116 bits (292), Expect = 5e-30
Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 21/190 (11%)
Query: 45 GIINSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYK 104
I S D DV + T + A + +
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA-DVVSE---YETPWWTAARKADEQ 58
Query: 105 MVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMM-VTPILAV 163
++ L+ +V+ DE G T L LG+ V+ L AD+ + +T +
Sbjct: 59 ALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117
Query: 164 SANMSEDSTDTNEIISMLIENGANVREKMPFTD---FSPLHFAVVKKNLSVVELLIKCKA 220
+ + E++ L+E GA++ + D + L A + ++
Sbjct: 118 AGYVRP------EVVEALVELGADIEVE----DERGLTALELAREILKTTPKGNPMQFGR 167
Query: 221 DTNL--IVKV 228
L ++ V
Sbjct: 168 RIGLEKVINV 177
Score = 99.9 bits (250), Expect = 2e-24
Identities = 35/246 (14%), Positives = 64/246 (26%), Gaps = 78/246 (31%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
+ + L K S A+V S +
Sbjct: 6 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV-------------SEY---ETPWW 49
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
A + K + + + LL DV+ ++ + L G + V+ L GA +D
Sbjct: 50 TAAR-KADEQALSQLL-EDRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH-- 104
Query: 490 YLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSE 549
+++ G
Sbjct: 105 ----------------------------------------------RDMRGGL------- 111
Query: 550 RRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA 609
+AL A E+V+ L++ GAD+ + G TAL +A + G
Sbjct: 112 ---TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE-ILKTTPKGNPMQFGR 167
Query: 610 YYDMKD 615
++
Sbjct: 168 RIGLEK 173
Score = 82.9 bits (206), Expect = 1e-18
Identities = 37/238 (15%), Positives = 63/238 (26%), Gaps = 80/238 (33%)
Query: 83 VNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFL 142
+ +G + G + A+V + TP A ++ + L
Sbjct: 7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQL 63
Query: 143 LSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHF 202
L + DV A D ENG + L F
Sbjct: 64 L-EDRDVDAV--------------------D---------ENG-----------RTALLF 82
Query: 203 AVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDG 262
+ V LL + AD L+ ++ G
Sbjct: 83 VAGLGSDKCVRLLAEAGAD----------------------------LDHRDMR----GG 110
Query: 263 DLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQ 320
+ LH A ++V+ LV+ DI ++ L + A + T +Q
Sbjct: 111 --LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL--KTTPKGNPMQ 164
Score = 81.4 bits (202), Expect = 5e-18
Identities = 34/178 (19%), Positives = 61/178 (34%), Gaps = 33/178 (18%)
Query: 462 PLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAHSTTELEERKKINDLLKLNLD 521
+ + G A + + + A
Sbjct: 17 EYLIEWKDGHSPSWVPSSYIAADVVS----EYETPWWTA--------------------- 51
Query: 522 FLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFK- 580
R + + +E V+ E +AL++VA G ++ V LL + GAD++ +
Sbjct: 52 ----ARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 106
Query: 581 SATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
G TALHMA + + +V L+ GA +++D + G T L+ A
Sbjct: 107 MRGGLTALHMAAGYVRPE-VVEALVELGADIEVED-ERGLTALELAREILKTTPKGNP 162
Score = 73.3 bits (181), Expect = 3e-15
Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 18/130 (13%)
Query: 360 IIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARS 419
++ +E + TP AA+ D Q+ L+ + +V+ A
Sbjct: 29 SWVPSSYIAADVVSEYE---TPWWTAARKADEQALSQLL-EDRDVD-----------AVD 73
Query: 420 SDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQ 479
+ R+AL + + + V+LL GAD++ + L +A ++V+ L
Sbjct: 74 ENG--RTALLFVAGL-GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130
Query: 480 NYGAQIDKEN 489
GA I+ E+
Sbjct: 131 ELGADIEVED 140
Score = 71.8 bits (177), Expect = 1e-14
Identities = 31/300 (10%), Positives = 68/300 (22%), Gaps = 128/300 (42%)
Query: 113 GANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDST 172
+ +G + G+ ADV ++ T
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE-----------------YET 46
Query: 173 DTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEP 232
P A K + + L++ D
Sbjct: 47 --------------------------PWWTAARKADEQALSQLLE-DRD----------- 68
Query: 233 LLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINA 292
+++ + +G + L +G+ + V++L + D++
Sbjct: 69 -----------------VDAVD-----ENG--RTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 293 QNRYF-LPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQ 351
++ L + A G V E L++ +
Sbjct: 105 RDMRGGLTALHMAAGYV--RPEVVEALVELGA---------------------------- 134
Query: 352 TQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQK 411
+I E + +T L A + +Q G + L +
Sbjct: 135 ------------------DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVIN 176
Score = 67.5 bits (166), Expect = 3e-13
Identities = 23/219 (10%), Positives = 59/219 (26%), Gaps = 66/219 (30%)
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
+ + DV + + A + Q + L++ + D++A
Sbjct: 18 YLIEWKDGHSPSWVP-SSYIAADV---VSEYETPWWTAARKADEQALSQLLEDR-DVDAV 72
Query: 294 NRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQ 353
+ + F G+G L + +++ +D +
Sbjct: 73 DENGRTALLFVAGLG--SDKCVRLLAEAG-ADLDH---------------RDMR------ 108
Query: 354 IKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAF 413
+T L AA + + + L++ GA++ + + +
Sbjct: 109 -----------------------GGLTALHMAAGYVRPEVVEALVELGADIEVEDERG-- 143
Query: 414 ISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVN 452
+AL+ A + + G +
Sbjct: 144 -----------LTALELARE-ILKTTPKGNPMQFGRRIG 170
Score = 63.3 bits (155), Expect = 9e-12
Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 11/106 (10%)
Query: 533 EVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMAC 592
EV K I + ++ + G+ ADV + T A
Sbjct: 1 EVNKII-----GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAA 52
Query: 593 RFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
R + +LL D D + G+T L + + LL
Sbjct: 53 RKADEQ-ALSQLL-EDRDVDAVD-ENGRTALLFVAGLGSDKCVRLL 95
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 110 bits (278), Expect = 7e-29
Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 13/135 (9%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
+GRT L++A G ++V LL+ GA+VN +D+ G TPLHLA G+ +VK LL AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 149 VRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTD---FSPLHFAVV 205
V AK TP+ + N E++ +L+E GA+V K D +PLH A
Sbjct: 61 VNAKDKNGRTPLHLAARNGHL------EVVKLLLEAGADVNAK----DKNGRTPLHLAAR 110
Query: 206 KKNLSVVELLIKCKA 220
+L VV+LL++ A
Sbjct: 111 NGHLEVVKLLLEAGA 125
Score = 104 bits (263), Expect = 9e-27
Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L A + + V+ LL G DVN K ++GRT L++A G ++V LL+ GA+VN
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEI 177
+D+ G TPLHLA G+ +VK LL ADV AK TP+ + N E+
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL------EV 116
Query: 178 ISMLIENGA 186
+ +L+E GA
Sbjct: 117 VKLLLEAGA 125
Score = 82.4 bits (205), Expect = 6e-19
Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 527 RSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFT 586
R+ + VK +E GA VN + + L A G+ E+V LLL+ GADVN K G T
Sbjct: 11 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 70
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
LH+A R + +V+ LL GA + KD K G+TPL A + +++ LL
Sbjct: 71 PLHLAARNGHLE-VVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLL 120
Score = 73.5 bits (182), Expect = 7e-16
Identities = 50/199 (25%), Positives = 74/199 (37%), Gaps = 77/199 (38%)
Query: 123 GYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLI 182
G TPLHLA G+ +VK LL ADV AK D
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK--------------------D--------- 32
Query: 183 ENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNS 242
+NG +PLH A +L VV+LL++ AD N
Sbjct: 33 KNG-----------RTPLHLAARNGHLEVVKLLLEAGADVN------------------- 62
Query: 243 VKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMF 302
D + + LH A G+L++V++L++ D+NA+++ P+
Sbjct: 63 ----------------AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH 106
Query: 303 FAIGMGRKHTHVAEYLLQQ 321
A G H V + LL+
Sbjct: 107 LAARNG--HLEVVKLLLEA 123
Score = 72.4 bits (179), Expect = 2e-15
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 15/114 (13%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
++NA+ + TPL AA++ L+ K L++ GA+VN A+ + R+ L
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-----------AKDKN--GRTPLH 73
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGA 483
A ++E+VKLLL GADVN +K + PL +A ++G ++VK L GA
Sbjct: 74 LAA-RNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 71.6 bits (177), Expect = 3e-15
Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 41/156 (26%)
Query: 462 PLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE-------AARIAHSTTELEERKKIND 514
PL +A ++G ++VK L GA ++ K+K AAR H ++
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNA----KDKNGRTPLHLAARNGH--------LEVVK 52
Query: 515 LLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNG 574
LL +E GA VN + + L A G+ E+V LLL+ G
Sbjct: 53 LL---------------------LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 575 ADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAY 610
ADVN K G T LH+A R + +V+ LL GAY
Sbjct: 92 ADVNAKDKNGRTPLHLAARNGHLE-VVKLLLEAGAY 126
Score = 71.6 bits (177), Expect = 4e-15
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 554 ALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDM 613
L A G+ E+V LLL+ GADVN K G T LH+A R + +V+ LL GA +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE-VVKLLLEAGADVNA 63
Query: 614 KDGKTGKTPLKHAEAGKNRDIIDLL 638
KD K G+TPL A + +++ LL
Sbjct: 64 KD-KNGRTPLHLAARNGHLEVVKLL 87
Score = 68.9 bits (170), Expect = 3e-14
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
TPL AA++ L+ K L++ GA+VN A+ + R+ L A ++E
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-----------AKDKN--GRTPLHLAA-RNGHLE 49
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
+VKLLL GADVN +K + PL +A ++G ++VK L GA ++ ++
Sbjct: 50 VVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Score = 63.5 bits (156), Expect = 2e-12
Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 42/158 (26%)
Query: 425 RSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQ 484
R+ L A ++E+VKLLL GADVN + PL +A ++G ++VK L GA
Sbjct: 3 RTPLHLAA-RNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 485 IDKENYLKNKE-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKN 537
++ K+K AAR H ++ LL
Sbjct: 61 VNA----KDKNGRTPLHLAARNGH--------LEVVKLL--------------------- 87
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGA 575
+E GA VN + + L A G+ E+V LLL+ GA
Sbjct: 88 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 41.6 bits (99), Expect = 9e-05
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 584 GFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
G T LH+A R + + +V+ LL GA + KD K G+TPL A + +++ LL
Sbjct: 2 GRTPLHLAAR-NGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLL 54
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 113 bits (284), Expect = 1e-28
Identities = 31/199 (15%), Positives = 66/199 (33%), Gaps = 41/199 (20%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDH---------------------------DVNEKLQDG 90
+ A++ + R + L V E+ +
Sbjct: 14 VKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESI 73
Query: 91 RTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKK-ADV 149
L+ A +G + + + VN D+ G T L+ AC+ G+K+IV+ L ++ ++
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL 133
Query: 150 RAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTD---FSPLHFAVVK 206
+ + T + A + +I+ +L+ GA + + A
Sbjct: 134 NQQNKLGDTALHAAAWKGYA------DIVQLLLAKGARTDLR----NIEKKLAFDMATNA 183
Query: 207 KNLSVVELLIKCKADTNLI 225
S+++ A L
Sbjct: 184 ACASLLKKKQGTDAVRTLS 202
Score = 111 bits (280), Expect = 5e-28
Identities = 23/214 (10%), Positives = 61/214 (28%), Gaps = 15/214 (7%)
Query: 84 NEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLL 143
+ ++ G+ ++ A+ + L ++ + T G ++
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNY 65
Query: 144 SKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFA 203
+ P+ + + + ++N V + L++A
Sbjct: 66 VAEQAESID-----NPLHEAAKRGNL------SWLRECLDNRVGVNGLDKA-GSTALYWA 113
Query: 204 VVKKNLSVVELLI-KCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDG 262
+ +VE+L + + N K+ L A IV+ L +K + +
Sbjct: 114 CHGGHKDIVEMLFTQPNIELNQQNKLGDTA-LHAAAWKGYADIVQ-LLLAKGARTDLRNI 171
Query: 263 DLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
+ A + +++ N
Sbjct: 172 EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAE 205
Score = 103 bits (259), Expect = 3e-25
Identities = 34/255 (13%), Positives = 73/255 (28%), Gaps = 63/255 (24%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
+ A + ++ L + ++ +
Sbjct: 14 VKVFRALYTFEPRTPDELYIEEGDIIYITDMS-------------DTNWWKGTSK----- 55
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE---- 495
+ L+ V + + PL A + G+ ++E + ++ +K
Sbjct: 56 -GRTGLIPSNYVAEQ-AESIDNPLHEAAKRGNLSWLRECLDNRVGVNG----LDKAGSTA 109
Query: 496 ---AARIAH-STTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERR 551
A H E+ L + +N ++
Sbjct: 110 LYWACHGGHKDIVEM--------LFT---------------------QPNIELNQQNKLG 140
Query: 552 GSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
+AL AWKGY +IV LLL GA + ++ A MA + ++++K A
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN-AACASLLKKKQGTDAVR 199
Query: 612 DMKDGKTGKTPLKHA 626
+ + + +
Sbjct: 200 TLSN-AEDYLDDEDS 213
Score = 97.3 bits (243), Expect = 4e-23
Identities = 34/259 (13%), Positives = 73/259 (28%), Gaps = 68/259 (26%)
Query: 199 PLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVS 258
+ A+ + L + D I ++ ++ + V+
Sbjct: 15 KVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWK-GTSKGRTGLI------PSNYVA 67
Query: 259 ISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYL 318
+++ LH+A GNL ++ + + +N ++ +++A G H + E L
Sbjct: 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG--HKDIVEML 125
Query: 319 LQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDM 378
Q +I +N +
Sbjct: 126 FTQPNI---------------------------------------------ELNQQNKLG 140
Query: 379 ITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNI 438
T L AA + L+ KGA +L +K + A A +
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKGARTDLRNIEK-------------KLAFDMAT-NAACA 186
Query: 439 EMVKLLLLHGADVNDTSNK 457
++K A ++ +
Sbjct: 187 SLLKKKQGTDAVRTLSNAE 205
Score = 96.2 bits (240), Expect = 1e-22
Identities = 33/215 (15%), Positives = 67/215 (31%), Gaps = 36/215 (16%)
Query: 425 RSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQ 484
+ + A + L + D+ G ++
Sbjct: 13 QVKVFRAL-YTFEPRTPDELYIEEGDIIYI-TDMSDTNWWKGTSKGRTGLIPSNYVAEQA 70
Query: 485 IDKENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACV 544
+N L EAA+ +++ +++ V
Sbjct: 71 ESIDNPLH--EAAK-----------------------------RGNLSWLRECLDNRVGV 99
Query: 545 NVSSERRGSALIYVAWKGYEEIVDLLLDN-GADVNFKSATGFTALHMACRFHSNDNIVRK 603
N + +AL + G+++IV++L ++N ++ G TALH A +IV+
Sbjct: 100 NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW-KGYADIVQL 158
Query: 604 LLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
LL GA D+++ K A ++
Sbjct: 159 LLAKGARTDLRN-IEKKLAFDMATNAACASLLKKK 192
Score = 86.1 bits (214), Expect = 3e-19
Identities = 30/243 (12%), Positives = 58/243 (23%), Gaps = 61/243 (25%)
Query: 359 QIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+ + +I D T + V
Sbjct: 26 RTPDELYIEEGDIIYITDMSDTNWWKGTSKGRT-----GLIPSNYVAEQ----------- 69
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+ L A K + N+ ++ L + VN +K L A G IV+ L
Sbjct: 70 --AESIDNPLHEAAK-RGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEML 125
Query: 479 -QNYGAQIDKENYLKNKE-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNK 530
++++ +NK AA + I LL
Sbjct: 126 FTQPNIELNQ----QNKLGDTALHAAAWKGY--------ADIVQLL-------------- 159
Query: 531 YDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHM 590
+ GA ++ + + A ++ A +A +
Sbjct: 160 -------LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDED 212
Query: 591 ACR 593
+
Sbjct: 213 SDL 215
Score = 86.1 bits (214), Expect = 3e-19
Identities = 38/272 (13%), Positives = 73/272 (26%), Gaps = 73/272 (26%)
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
+F A+ + + + L + D+ ++ K G ++ + Q
Sbjct: 16 VFRALYTFEPRTPD-ELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN-----YVAEQ 69
Query: 294 NRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQ 353
P+ A G + L
Sbjct: 70 AESIDNPLHEAAKRG--NLSWLRECLDNRV------------------------------ 97
Query: 354 IKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLI-QKGANVNLTETQKA 412
+N T L +A + L Q +N
Sbjct: 98 ----------------GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLG- 140
Query: 413 FISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDF 472
+AL A K ++V+LLL GA + N K+ +A +
Sbjct: 141 ------------DTALHAAA-WKGYADIVQLLLAKGARTD-LRNIEKKLAFDMATNAACA 186
Query: 473 QIVKELQNYGAQI---DKENYLKNKEAARIAH 501
++K+ Q A + E+YL ++++ H
Sbjct: 187 SLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218
Score = 79.2 bits (196), Expect = 8e-17
Identities = 38/188 (20%), Positives = 58/188 (30%), Gaps = 42/188 (22%)
Query: 456 NKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNK---EAARIAHSTTELEERKKI 512
KP Q + A+ + + + EL I + + +
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR----------- 57
Query: 513 NDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLD 572
+ V +E + L A +G + LD
Sbjct: 58 -----------------------TGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLD 94
Query: 573 NGADVNFKSATGFTALHMACRFHSNDNIVRKLL-HHGAYYDMKDGKTGKTPLKHAEAGKN 631
N VN G TAL+ AC + +IV L + ++ K G T L HA A K
Sbjct: 95 NRVGVNGLDKAGSTALYWACH-GGHKDIVEMLFTQPNIELNQQN-KLGDTAL-HAAAWKG 151
Query: 632 R-DIIDLL 638
DI+ LL
Sbjct: 152 YADIVQLL 159
Score = 66.5 bits (163), Expect = 2e-12
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L +A W V+ LL+ G + + + + A MA ++ A
Sbjct: 142 TALHAAAWKGYADIVQLLLAKGA-RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT 200
Query: 118 DRDEKGYTPLHLACYLG 134
+ + Y +
Sbjct: 201 LSNAEDYLDDEDSDLEH 217
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 108 bits (272), Expect = 6e-28
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
D L A G V +L+ +GA+VN +DE G TPL+LA G+ IV+ LL AD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 149 VRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTD---FSPLHFAVV 205
V A ++ TP+ + EI +L+++GA+V + D + ++
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHL------EIAEVLLKHGADVNAQ----DKFGKTAFDISIG 122
Query: 206 KKNLSVVELLIK 217
N + E+L K
Sbjct: 123 NGNEDLAEILQK 134
Score = 89.8 bits (224), Expect = 2e-21
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L A + VE LL G DVN G T L++A G ++ +L+ HGA+VN
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNGA-DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN 107
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLS 144
+D+ G T ++ GN+++ + L
Sbjct: 108 AQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 85.5 bits (213), Expect = 6e-20
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 22/149 (14%)
Query: 109 LIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMS 168
HHG+++ L A G + V+ L++ ADV AK +TP+ +A+
Sbjct: 7 HHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59
Query: 169 EDSTDTNEIISMLIENGANVREKMPFTD---FSPLHFAVVKKNLSVVELLIKCKADTNLI 225
EI+ +L++NGA+V D F+PLH A +L + E+L+K AD N
Sbjct: 60 L------EIVEVLLKNGADVNAV----DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
Query: 226 VKVNQEPLLFFAIESNSVKIVEAFLNSKN 254
K + +I + + + E L N
Sbjct: 110 DKFGKTA-FDISIGNGNEDLAE-ILQKLN 136
Score = 83.2 bits (207), Expect = 4e-19
Identities = 43/113 (38%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 526 VRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGF 585
R+ + DEV+ + +GA VN E + L G+ EIV++LL NGADVN A GF
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF 81
Query: 586 TALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
T LH+A + I LL HGA + +D K GKT + N D+ ++L
Sbjct: 82 TPLHLAAFIGHLE-IAEVLLKHGADVNAQD-KFGKTAFDISIGNGNEDLAEIL 132
Score = 74.7 bits (185), Expect = 4e-16
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 537 NIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHS 596
+ G+ + L+ A G ++ V +L+ NGADVN K G T L++A
Sbjct: 7 HHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59
Query: 597 NDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+ IV LL +GA + D G TPL A + +I ++L
Sbjct: 60 LE-IVEVLLKNGADVNAVD-AIGFTPLHLAAFIGHLEIAEVL 99
Score = 70.9 bits (175), Expect = 8e-15
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 369 ENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSAL 428
+ + G D+ LL AA+ + L+ GA+VN + D + L
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVN-------------AKDEYGLTPL 51
Query: 429 QYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKE 488
A H ++E+V++LL +GADVN + PL +A G +I + L +GA ++ +
Sbjct: 52 YLATAH-GHLEIVEVLLKNGADVNAV-DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
Query: 489 N 489
+
Sbjct: 110 D 110
Score = 69.7 bits (172), Expect = 2e-14
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
++NA+ + +TPL A H L+ + L++ GA+VN + D + L
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-------------AVDAIGFTPLH 85
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
A ++E+ ++LL HGADVN +K + ++I +G+ + + L
Sbjct: 86 LAA-FIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 62.8 bits (154), Expect = 4e-12
Identities = 38/193 (19%), Positives = 66/193 (34%), Gaps = 63/193 (32%)
Query: 256 DVSISDG-DLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHV 314
G DL L +A G V++L+ D+NA++ Y L P++ A G H +
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG--HLEI 62
Query: 315 AEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAE 374
E LL+ + ++NA
Sbjct: 63 VEVLLKNGA----------------------------------------------DVNAV 76
Query: 375 GDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKH 434
TPL AA L+ A+ L++ GA+VN + D ++A + +
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVN-------------AQDKFGKTAFDISIGN 123
Query: 435 KNNIEMVKLLLLH 447
N ++ ++L
Sbjct: 124 -GNEDLAEILQKL 135
Score = 60.1 bits (147), Expect = 5e-11
Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 62/188 (32%)
Query: 391 LQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGAD 450
++ + + G+++ L A + + V++L+ +GAD
Sbjct: 1 MRGSHHHHHHGSDLG--------------------KKLLEAAR-AGQDDEVRILMANGAD 39
Query: 451 VNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKE-------AARIAHST 503
VN ++ PL +A G +IV+ L GA ++ + AA I H
Sbjct: 40 VNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADVNA----VDAIGFTPLHLAAFIGH-- 92
Query: 504 TELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGY 563
+I ++L ++ GA VN + +A G
Sbjct: 93 ------LEIAEVL---------------------LKHGADVNAQDKFGKTAFDISIGNGN 125
Query: 564 EEIVDLLL 571
E++ ++L
Sbjct: 126 EDLAEILQ 133
Score = 49.7 bits (120), Expect = 2e-07
Identities = 34/218 (15%), Positives = 65/218 (29%), Gaps = 91/218 (41%)
Query: 181 LIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIES 240
+G+++ + L A V +L+ AD
Sbjct: 7 HHHHGSDLGK--------KLLEAARAGQDDEVRILMANGAD------------------- 39
Query: 241 NSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPP 300
+N+K+ G + L+ A G+L+IV++L+K D+NA + P
Sbjct: 40 ---------VNAKD-----EYG--LTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTP 83
Query: 301 MFFAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQI 360
+ A +G H +AE LL+ +
Sbjct: 84 LHLAAFIG--HLEIAEVLLKHGA------------------------------------- 104
Query: 361 IKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLI 398
++NA+ T + + + A+ L
Sbjct: 105 ---------DVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 43.1 bits (103), Expect = 4e-05
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHH 112
T L A + + E LL G DVN + + G+TA ++I G + +L
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 107 bits (270), Expect = 3e-26
Identities = 45/266 (16%), Positives = 86/266 (32%), Gaps = 52/266 (19%)
Query: 58 TLLCSAVWDNKIREV----EFLLSTGDHDVNEKLQD---GRTALYMAIL---QGLYKMVT 107
+ AV + +E+ FL + + + +D G+T L A+L G +
Sbjct: 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74
Query: 108 LLIHHGA-----------NVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMM 156
LL+ + D KG T LH+A N +V L+ ADV+A +
Sbjct: 75 LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD 134
Query: 157 VTPILAVSANMSEDST------DTN--EIISMLIENG---ANVREKMPFTDFSPLHFAVV 205
TN I+ L++N A++ + + LH V
Sbjct: 135 FFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV-GNTVLHALVE 193
Query: 206 KKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLN 265
+ +V +++ A L+ I++
Sbjct: 194 VADNTVDNTKFVTSMYNEILILG-------------------AKLHPTLKLEEITNRKGL 234
Query: 266 SLLHKACHVGNLQIVQMLVKRKFDIN 291
+ L A G + ++ +++R+
Sbjct: 235 TPLALAASSGKIGVLAYILQREIHEP 260
Score = 97.9 bits (244), Expect = 8e-23
Identities = 47/343 (13%), Positives = 99/343 (28%), Gaps = 97/343 (28%)
Query: 77 STGDHDVNEKLQDGRTALYMAI-------LQGLYKMVTLLIHHGANVNDRD-EKGYTPLH 128
S + +L D R +++ A+ L+ L + + +D E G T L
Sbjct: 1 SVSAGEKPPRLYD-RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLL 59
Query: 129 LA---CYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENG 185
A + G + + LL + + +
Sbjct: 60 KAMLNLHNGQNDTIALLLDVARKT--------------------------DSLKQFV--N 91
Query: 186 ANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKI 245
A+ + + + LH A+ ++N+++V LL++ AD
Sbjct: 92 ASYTDS-YYKGQTALHIAIERRNMTLVTLLVENGADVQ-------------------AAA 131
Query: 246 VEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKF---DINAQNRYFLPPMF 302
F G+L L A L IV+ L++ + DI+A++ +
Sbjct: 132 NGDFFKKTKGRPGFYFGELP--LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLH 189
Query: 303 FAIGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIK 362
+ + +++ N +L
Sbjct: 190 ALVEVADNTVDNTKFV-----------TSMYNEILILG---------------------A 217
Query: 363 RIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVN 405
++ + +TPL AA + Y++Q+ +
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP 260
Score = 93.7 bits (233), Expect = 2e-21
Identities = 44/268 (16%), Positives = 89/268 (33%), Gaps = 47/268 (17%)
Query: 354 IKRLDQIIKRIIDRTENINA-EGDDMITPLLFAAKHC---DLQSAKYLIQKGANVNLTET 409
++ L ++R R + + + T LL A + + L+ +
Sbjct: 29 LESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD--SL 86
Query: 410 QKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQK-------- 461
++ + S + ++AL A + + N+ +V LL+ +GADV +N K
Sbjct: 87 KQFVNASYTDSYYKGQTALHIAIE-RRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGF 145
Query: 462 -----PLAVAIQSGDFQIVKELQNYG---AQIDKENYLKN---KEAARIAHSTTELEERK 510
PL++A + IVK L A I + + N +A +T +
Sbjct: 146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVD----- 200
Query: 511 KINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLL 570
N F+ ++ + K +++ + + L A G ++ +
Sbjct: 201 --------NTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI 252
Query: 571 LDNGADVNFKSATGFTALHMACRF-HSN 597
L H A H +
Sbjct: 253 LQREIH-------EPECRHAAAHHHHHH 273
Score = 82.9 bits (205), Expect = 1e-17
Identities = 38/306 (12%), Positives = 70/306 (22%), Gaps = 95/306 (31%)
Query: 370 NINAEGDDMITPLLFAAKHCD-------LQSAKYLIQKGANVNLTETQKAFISDARSSDF 422
+ A + L + ++ + + +
Sbjct: 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETG---------- 54
Query: 423 CFRSALQYA--CKHKNNIEMVKLLLLHGADVNDT----------SNKPKQKPLAVAIQSG 470
++ L A H + + LLL + S Q L +AI+
Sbjct: 55 --KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR 112
Query: 471 DFQIVKELQNYGAQIDKENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNK 530
+ +V L GA +
Sbjct: 113 NMTLVTLLVENGADVQAAA----------------------------------------- 131
Query: 531 YDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNG---ADVNFKSATGFTA 587
+ L A IV LL N AD++ + + G T
Sbjct: 132 ----NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV 187
Query: 588 LHMACRFHSND---------------NIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNR 632
LH N + KL ++ + + G TPL A +
Sbjct: 188 LHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITN-RKGLTPLALAASSGKI 246
Query: 633 DIIDLL 638
++ +
Sbjct: 247 GVLAYI 252
Score = 67.1 bits (164), Expect = 2e-12
Identities = 39/218 (17%), Positives = 70/218 (32%), Gaps = 34/218 (15%)
Query: 447 HGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAHSTTEL 506
A ++ + A+ + Q ++ L + + K L + E T L
Sbjct: 2 VSAGEKP-PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKK--RLTDSEFKDPETGKTCL 58
Query: 507 -----EERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWK 561
ND + L LD + D +K+ + A S + +AL +
Sbjct: 59 LKAMLNLHNGQNDTIALLLDVARKT-----DSLKQFV--NASYTDSYYKGQTALHIAIER 111
Query: 562 GYEEIVDLLLDNGADVNFKS--------------ATGFTALHMACRFHSNDNIVRKLLHH 607
+V LL++NGADV + G L +A + IV+ LL +
Sbjct: 112 RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC-TNQLAIVKFLLQN 170
Query: 608 GAYY---DMKDGKTGKTPLKHAEAGKNRDIIDLLHLID 642
+D G T L + + + +
Sbjct: 171 SWQPADISARD-SVGNTVLHALVEVADNTVDNTKFVTS 207
Score = 51.3 bits (123), Expect = 4e-07
Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 53 KSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHH 112
+V+ T +++++ + L T + G T L +A G ++ ++
Sbjct: 197 NTVDNTKFVTSMYNEILILGAKLHPTLK-LEEITNRKGLTPLALAASSGKIGVLAYILQR 255
Query: 113 GANVNDRDEKGYTPLHLACYLGNKN 137
+ H A + + +
Sbjct: 256 EIH-------EPECRHAAAHHHHHH 273
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 100 bits (251), Expect = 2e-25
Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L +A + EV+ LLS G DVN + +DG T L++A G ++V LL+ GA+VN
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGA-DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
R + G TP HLA G+ IVK L +K ADV A+
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 98.6 bits (247), Expect = 7e-25
Identities = 42/111 (37%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 81 HDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVK 140
H K DG T L+ A G + V L+ GA+VN R + G TPLHLA G+ IVK
Sbjct: 2 HMWGSK--DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 141 FLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREK 191
LL+K ADV A+ TP N EI+ +L GA+V +
Sbjct: 60 LLLAKGADVNARSKDGNTPEHLAKKNGHH------EIVKLLDAKGADVNAR 104
Score = 75.9 bits (188), Expect = 7e-17
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+ GA VN S+ + L A G+ EIV LLL GADVN +S G T H+A + +
Sbjct: 29 LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHH 88
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKTPLKH 625
+ IV+ L GA + + H
Sbjct: 89 E-IVKLLDAKGADVNARS-WGSSHHHHH 114
Score = 74.3 bits (184), Expect = 3e-16
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 554 ALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDM 613
L A G+ E V LL GADVN +S G T LH+A + + + IV+ LL GA +
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAK-NGHAEIVKLLLAKGADVNA 70
Query: 614 KDGKTGKTPLKHAEAGKNRDIIDLL 638
+ K G TP A+ + +I+ LL
Sbjct: 71 RS-KDGNTPEHLAKKNGHHEIVKLL 94
Score = 72.4 bits (179), Expect = 1e-15
Identities = 40/184 (21%), Positives = 58/184 (31%), Gaps = 77/184 (41%)
Query: 113 GANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDST 172
G +D G TPLH A G+ VK LLSK ADV A+
Sbjct: 1 GHMWGSKD--GNTPLHNAAKNGHAEEVKKLLSKGADVNAR-------------------- 38
Query: 173 DTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEP 232
+ +PLH A + +V+LL+ AD N
Sbjct: 39 SKD--------------------GNTPLHLAAKNGHAEIVKLLLAKGADVN--------- 69
Query: 233 LLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINA 292
D N+ H A G+ +IV++L + D+NA
Sbjct: 70 --------------------------ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Query: 293 QNRY 296
++
Sbjct: 104 RSWG 107
Score = 71.6 bits (177), Expect = 2e-15
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
++ D TPL AAK+ + K L+ KGA+VN + + L
Sbjct: 3 MWGSK--DGNTPLHNAAKNGHAEEVKKLLSKGADVN-------------ARSKDGNTPLH 47
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
A + E+VKLLL GADVN S P +A ++G +IVK L GA ++ +
Sbjct: 48 LAA-KNGHAEIVKLLLAKGADVNARSKD-GNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Query: 490 Y 490
+
Sbjct: 106 W 106
Score = 68.6 bits (169), Expect = 3e-14
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L A + V+ LL+ G DVN + +DG T ++A G +++V LL GA+VN
Sbjct: 44 TPLHLAAKNGHAEIVKLLLAKGA-DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN 102
Query: 118 DRDEKGYTPLH 128
R H
Sbjct: 103 ARSWGSSHHHH 113
Score = 49.7 bits (120), Expect = 1e-07
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
L A ++ + V+ L SK DV+ D N+ LH A G+ +IV++L+ + D+NA+
Sbjct: 13 LHNAAKNGHAEEVK-KLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 294 NRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
++ P A G H + + L + + +VN
Sbjct: 72 SKDGNTPEHLAKKNG--HHEIVKLLDAKGA-DVN 102
Score = 43.5 bits (104), Expect = 2e-05
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 574 GADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRD 633
G K G T LH A + + + V+KLL GA + + K G TPL A + +
Sbjct: 1 GHMWGSKD--GNTPLHNAAK-NGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAE 56
Query: 634 IIDLL 638
I+ LL
Sbjct: 57 IVKLL 61
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 99.4 bits (249), Expect = 5e-25
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 7/125 (5%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
A+ G V + G +VN E G PLH A G I++FLL K AD
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 149 VRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKN 208
+ A +TP+L+ + +L+ GA+ K P + +
Sbjct: 66 INAPDKHHITPLLSAVYEGHV------SCVKLLLSKGADKTVKGPD-GLTAFEATDNQAI 118
Query: 209 LSVVE 213
++++
Sbjct: 119 KALLQ 123
Score = 97.1 bits (243), Expect = 3e-24
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
A+ + + EV+ ++ G+ DVN L+ GR L+ A G +++ L+ GA++N
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
D+ TPL A Y G+ + VK LLSK AD K
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102
Score = 81.3 bits (202), Expect = 1e-18
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Query: 532 DEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 591
DEVK + G VN + E L Y A G EI++ LL GAD+N T L A
Sbjct: 21 DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80
Query: 592 CRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDII 635
+ + V+ LL GA +K G T + + + ++
Sbjct: 81 VY-EGHVSCVKLLLSKGADKTVKG-PDGLTAFEATDNQAIKALL 122
Score = 74.4 bits (184), Expect = 3e-16
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
L A ++ +EFLL G D+N + T L A+ +G V LL+ GA+
Sbjct: 42 KPLHYAADCGQLEILEFLLLKGA-DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT 100
Query: 118 DRDEKGYTPLHLACYLGNKNIVK 140
+ G T K +++
Sbjct: 101 VKGPDGLTAFEATDNQAIKALLQ 123
Score = 74.4 bits (184), Expect = 4e-16
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 18/119 (15%)
Query: 371 INAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQY 430
+ + D ++A K+ DL K + KG +VN + R L Y
Sbjct: 3 LGSMCD---KEFMWALKNGDLDEVKDYVAKGEDVN-------------RTLEGGRKPLHY 46
Query: 431 ACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
A +E+++ LLL GAD+N +K PL A+ G VK L + GA +
Sbjct: 47 AADC-GQLEILEFLLLKGADIN-APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
Score = 69.7 bits (172), Expect = 1e-14
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 554 ALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDM 613
++ G + V + G DVN G LH A I+ LL GA +
Sbjct: 10 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAAD-CGQLEILEFLLLKGADINA 68
Query: 614 KDGKTGKTPLKHAEAGKNR-DIIDLL 638
D K TPL + + + LL
Sbjct: 69 PD-KHHITPL-LSAVYEGHVSCVKLL 92
Score = 65.5 bits (161), Expect = 4e-13
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
Query: 360 IIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARS 419
+K + + E++N + PL +AA L+ ++L+ KGA++N A
Sbjct: 22 EVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-----------APD 70
Query: 420 SDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVK 476
+ L A + ++ VKLLL GAD +++
Sbjct: 71 KHHI--TPLLSAVY-EGHVSCVKLLLSKGADKT-VKGPDGLTAFEATDNQAIKALLQ 123
Score = 60.5 bits (148), Expect = 2e-11
Identities = 27/138 (19%), Positives = 41/138 (29%), Gaps = 48/138 (34%)
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
A G+L V+ V + D+N P+ +A G + E+LL + +
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG--QLEILEFLLLKGA---- 64
Query: 328 LPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAK 387
+INA ITPLL A
Sbjct: 65 ------------------------------------------DINAPDKHHITPLLSAVY 82
Query: 388 HCDLQSAKYLIQKGANVN 405
+ K L+ KGA+
Sbjct: 83 EGHVSCVKLLLSKGADKT 100
Score = 58.9 bits (144), Expect = 7e-11
Identities = 26/174 (14%), Positives = 44/174 (25%), Gaps = 75/174 (43%)
Query: 123 GYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLI 182
A G+ + VK ++K DV +
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRT-----------------------------L 37
Query: 183 ENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNS 242
E G PLH+A L ++E L+ AD N
Sbjct: 38 EGG-----------RKPLHYAADCGQLEILEFLLLKGADIN------------------- 67
Query: 243 VKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
D + L A + G++ V++L+ + D +
Sbjct: 68 ----------------APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD 105
Score = 54.3 bits (132), Expect = 3e-09
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
+A+++ + V+ +K DV+ + LH A G L+I++ L+ + DINA
Sbjct: 11 FMWALKNGDLDEVK-DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 294 NRYFLPPMFFAIGMGRKHTHVAEYLLQQ 321
+++ + P+ A+ G H + LL +
Sbjct: 70 DKHHITPLLSAVYEG--HVSCVKLLLSK 95
Score = 49.7 bits (120), Expect = 1e-07
Identities = 31/141 (21%), Positives = 48/141 (34%), Gaps = 28/141 (19%)
Query: 427 ALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQID 486
+A K +++ VK + G DVN T +KPL A G +I++ L GA I+
Sbjct: 10 EFMWALK-NGDLDEVKDYVAKGEDVNRTLEG-GRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 487 KENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNV 546
+K H T L L V VK + GA V
Sbjct: 68 A----PDK------HHITPL----------------LSAVYEGHVSCVKLLLSKGADKTV 101
Query: 547 SSERRGSALIYVAWKGYEEIV 567
+A + + ++
Sbjct: 102 KGPDGLTAFEATDNQAIKALL 122
Score = 37.0 bits (87), Expect = 0.004
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 584 GFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
A + D V+ + G + + G+ PL +A +I++ L
Sbjct: 7 CDKEFMWALKNGDLD-EVKDYVAKGEDVNRTL-EGGRKPLHYAADCGQLEILEFL 59
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 103 bits (259), Expect = 6e-25
Identities = 45/278 (16%), Positives = 79/278 (28%), Gaps = 67/278 (24%)
Query: 58 TLLCSAVWDNKIREV----EFLLSTGDH---DVNEKLQDGRTALYMAIL---QGLYKMVT 107
L S V E+ E+L + + G+T L A+L G+ +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 108 LLIHHG-----------ANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMM 156
L+ A D +G++ LH+A + VK L+ ADV +
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123
Query: 157 VTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLI 216
PL A K VV L+
Sbjct: 124 FFQ-KHQGTCFYFGEL--------------------------PLSLAACTKQWDVVTYLL 156
Query: 217 K---CKADTNLIVKVNQEPL---------------LFFAIESNSVKIVEAFLNSKNFDVS 258
+ A + L L + +++ L
Sbjct: 157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA-RLCPTVQLEE 215
Query: 259 ISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
IS+ + L A G ++I + +++R+F A + +
Sbjct: 216 ISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHH 253
Score = 89.5 bits (222), Expect = 4e-20
Identities = 48/338 (14%), Positives = 87/338 (25%), Gaps = 97/338 (28%)
Query: 90 GRTALYMAILQGLYKMVTLLIHH--------GANVNDRDEKGYTPLHLA---CYLGNKNI 138
R L+ + +G+ + +T L+ + + G T L A G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 139 VKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFS 198
+ LL D P V+A +++ S
Sbjct: 62 IMPLLQIDKDSGN-------PKPLVNAQCTDEFYQ----------------------GHS 92
Query: 199 PLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVS 258
LH A+ K++L V+LL++ AD +L
Sbjct: 93 ALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQK----------------------HQG 130
Query: 259 ISDGDLNSLLHKACHVGNLQIVQMLVKRKF---DINAQNRYFLPPMFFAIGMGRKHTHVA 315
L A +V L++ + A + G H
Sbjct: 131 TCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSL-----------GNTVLHAL 179
Query: 316 EYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEG 375
+ N L I + LL R+ +
Sbjct: 180 VMIADNSPENSALVIHMYDGLLQMG---------------------ARLCPTVQLEEISN 218
Query: 376 DDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAF 413
+TPL AAK ++ ++++Q+ +
Sbjct: 219 HQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHHH 256
Score = 88.7 bits (220), Expect = 8e-20
Identities = 45/271 (16%), Positives = 83/271 (30%), Gaps = 65/271 (23%)
Query: 357 LDQIIKRIIDRTENINAEGDDMITPLLFAAKHC---DLQSAKYLIQKGANVNLTETQKAF 413
L+ + T++ EG T L+ A + L+Q + +
Sbjct: 22 LEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN- 80
Query: 414 ISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVN------------DTSNKPKQK 461
+ + SAL A + K +++ VKLL+ +GADV+ T +
Sbjct: 81 -AQCTDEFYQGHSALHIAIE-KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL 138
Query: 462 PLAVAIQSGDFQIVKEL---QNYGAQIDKENYLKNKEAARIAHSTTELEERKKINDLLKL 518
PL++A + + +V L + A ++ + L N T L
Sbjct: 139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGN----------TVL------------ 176
Query: 519 NLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVN 578
+ + SAL+ + G ++ L
Sbjct: 177 ---------------------HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE 215
Query: 579 FKSATGFTALHMACRFHSNDNIVRKLLHHGA 609
+ G T L +A + I R +L
Sbjct: 216 ISNHQGLTPLKLAAK-EGKIEIFRHILQREF 245
Score = 80.2 bits (198), Expect = 7e-17
Identities = 40/290 (13%), Positives = 64/290 (22%), Gaps = 82/290 (28%)
Query: 379 ITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYA--CKHKN 436
L + L++ L K A + ++ L A
Sbjct: 3 RDRLFSVVSRGVPEELTGLLEY-----LRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDG 57
Query: 437 NIEMVKLLLLHGADVNDT----------SNKPKQKPLAVAIQSGDFQIVKELQNYGAQID 486
+ LL D + L +AI+ Q VK L GA +
Sbjct: 58 VNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH 117
Query: 487 KENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNV 546
+ G
Sbjct: 118 L------------------------------------RACGRFFQKHQGTCFYFGE---- 137
Query: 547 SSERRGSALIYVAWKGYEEIVDLLLDNG---ADVNFKSATGFTALHMACRFHSNDN---- 599
L A ++V LL+N A + + G T LH N
Sbjct: 138 ------LPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSA 191
Query: 600 -----------IVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+ +L ++ + G TPLK A +I +
Sbjct: 192 LVIHMYDGLLQMGARLCPTVQLEEISN-HQGLTPLKLAAKEGKIEIFRHI 240
Score = 69.8 bits (171), Expect = 2e-13
Identities = 39/293 (13%), Positives = 73/293 (24%), Gaps = 72/293 (24%)
Query: 196 DFSPLHFAVVKKNLSVVELLIK--CKADTNLIVKVNQE------PLLFFAIES--NSVKI 245
D L V + + L++ L E L+ +
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 246 VEAFLN----------SKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNR 295
+ L N + +S LH A +LQ V++LV+ D++ +
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121
Query: 296 YFLPPMFFAIGMGRK-----------HTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLK 344
V YLL+ +L + L +TV+
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEAT--DSLGNTVLHA- 178
Query: 345 DPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANV 404
+ A+ + L+ LQ L
Sbjct: 179 ------------------------LVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLE 214
Query: 405 NLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNK 457
++ Q + L+ A K + IE+ + +L +
Sbjct: 215 EISNHQG-------------LTPLKLAAK-EGKIEIFRHILQREFSGAAAHHH 253
Score = 54.8 bits (132), Expect = 2e-08
Identities = 38/287 (13%), Positives = 72/287 (25%), Gaps = 64/287 (22%)
Query: 234 LFFAIESNSVKIVEAFL-----NSKNFDVSISDGDLN--SLLHKA---CHVGNLQIVQML 283
LF + + + L NSK S + L KA G + L
Sbjct: 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65
Query: 284 VKRKFD-----------INAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPIKR 332
++ D + + AI + L++ + +V+L
Sbjct: 66 LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR--SLQCVKLLVENGA-DVHLRACG 122
Query: 333 PNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQ 392
+ PL AA
Sbjct: 123 RFFQKHQGTCFYFGE--------------------------------LPLSLAACTKQWD 150
Query: 393 SAKYLIQKG---ANVNLTETQKA---FISDARSSDFCFRSALQYACKHKNNIEMVKLLLL 446
YL++ A++ T++ + + SAL ++M L
Sbjct: 151 VVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMY-DGLLQMGARLCP 209
Query: 447 HGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKN 493
SN PL +A + G +I + + ++ +
Sbjct: 210 TVQLEE-ISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 100 bits (250), Expect = 1e-23
Identities = 50/254 (19%), Positives = 86/254 (33%), Gaps = 50/254 (19%)
Query: 72 VEFLLSTGDHDVNEKL----QDGRTALYMAILQ---GLYKMVTLLIHHG----------- 113
+ FLL+ + ++ G+T L A+L G + +L+
Sbjct: 25 LSFLLTHKK-RLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83
Query: 114 ANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDST- 172
+ D +G T LH+A K+ V+ L+ K ADV A+
Sbjct: 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELP 143
Query: 173 -----DTN--EIISMLIENG---ANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADT 222
TN I+ L ENG A++R + + LH V + + K
Sbjct: 144 LSLAACTNQPHIVHYLTENGHKQADLRRQDSR-GNTVLHALVAIADNTRENTKFVTKMYD 202
Query: 223 NLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQM 282
L++K A L ++ + D S L A G + I Q
Sbjct: 203 LLLIKC-------------------AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH 243
Query: 283 LVKRKFDINAQNRY 296
+++R+ A + +
Sbjct: 244 IIRREIADAAAHHH 257
Score = 90.6 bits (225), Expect = 2e-20
Identities = 48/330 (14%), Positives = 94/330 (28%), Gaps = 96/330 (29%)
Query: 90 GRTALYMAI----LQGLYKMVTLLIHHGANVNDRDEK----GYTPLHLA---CYLGNKNI 138
R L+ + GL +++ L+ H + D + + G T L A G +
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 139 VKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFS 198
+ LL ++ N + G +
Sbjct: 65 IPILLD------------------IAEKTGNMREFINSPFRDVYYRG-----------QT 95
Query: 199 PLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVS 258
LH A+ ++ VELL++ AD + + F K+
Sbjct: 96 ALHIAIERRCKHYVELLVEKGADVH-------------------AQARGRFFQPKDEGGY 136
Query: 259 ISDGDLNSLLHKACHVGNLQIVQMLVKRKF---DINAQNRYFLPPMFFAIGMGRKHTHVA 315
G+L L A IV L + D+ Q+ + + +
Sbjct: 137 FYFGEL--PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENT 194
Query: 316 EYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEG 375
+++ K +LLL + + +N +G
Sbjct: 195 KFV-----------TKMYDLLLI------------------KCAKLFPDTNLEALLNNDG 225
Query: 376 DDMITPLLFAAKHCDLQSAKYLIQKGANVN 405
+PL+ AAK + +++I++
Sbjct: 226 L---SPLMMAAKTGKIGIFQHIIRREIADA 252
Score = 79.4 bits (196), Expect = 1e-16
Identities = 32/178 (17%), Positives = 60/178 (33%), Gaps = 32/178 (17%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L A+ VE L+ G DV+ + + +
Sbjct: 95 TALHIAIERRCKHYVELLVEKG-ADVHAQARGRF-------------------FQPKDEG 134
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSK---KADVRAKCSMMVTP---ILAVSANMSEDS 171
G PL LA +IV +L +AD+R + S T ++A++ N E++
Sbjct: 135 GYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENT 194
Query: 172 TDTNEIISMLIENGANVREKMPFTD------FSPLHFAVVKKNLSVVELLIKCKADTN 223
++ +L+ A + SPL A + + + +I+ +
Sbjct: 195 KFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252
Score = 76.7 bits (189), Expect = 1e-15
Identities = 39/292 (13%), Positives = 63/292 (21%), Gaps = 87/292 (29%)
Query: 380 TPLLFAAKHCDLQS----AKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYA--CK 433
L +L+ + + R ++ L A
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLT--------DEEFREPSTG-KTCLPKALLNL 57
Query: 434 HKNNIEMVKLLLLHGADVNDT----------SNKPKQKPLAVAIQSGDFQIVKELQNYGA 483
+ + +LL + Q L +AI+ V+ L GA
Sbjct: 58 SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGA 117
Query: 484 QIDKENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGAC 543
+ + R + + G
Sbjct: 118 DVHAQA-----------------------------------RGRFFQPKDEGGYFYFGE- 141
Query: 544 VNVSSERRGSALIYVAWKGYEEIVDLLLDNG---ADVNFKSATGFTALHMACRFHSND-- 598
L A IV L +NG AD+ + + G T LH N
Sbjct: 142 ---------LPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRE 192
Query: 599 ------NIVRKLLHHGAYYDMKDG------KTGKTPLKHAEAGKNRDIIDLL 638
+ LL A G +PL A I +
Sbjct: 193 NTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244
Score = 72.1 bits (177), Expect = 4e-14
Identities = 40/248 (16%), Positives = 77/248 (31%), Gaps = 36/248 (14%)
Query: 354 IKRLDQIIKRIIDRTENINAE----GDDMITPLLFAAKHC---DLQSAKYLIQKGANVNL 406
L+ ++ ++ + + E T L A + + L+
Sbjct: 18 PDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTG- 76
Query: 407 TETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQK----- 461
++ S R + ++AL A + V+LL+ GADV+ + +
Sbjct: 77 -NMREFINSPFRDVYYRGQTALHIAIER-RCKHYVELLVEKGADVHAQARGRFFQPKDEG 134
Query: 462 --------PLAVAIQSGDFQIVKELQNYG---AQIDKENYLKNKEAARIAHSTTELEERK 510
PL++A + IV L G A + +++ N T L
Sbjct: 135 GYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGN----------TVLHALV 184
Query: 511 KINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLL 570
I D + N F+ + + K D + + S L+ A G I +
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244
Query: 571 LDNGADVN 578
+
Sbjct: 245 IRREIADA 252
Score = 69.0 bits (169), Expect = 4e-13
Identities = 42/322 (13%), Positives = 82/322 (25%), Gaps = 108/322 (33%)
Query: 162 AVSANMSEDSTDTNEIISMLIENGANVREKMPFTD---FSPLHFAVV---KKNLSVVELL 215
VS ++S L+ + + ++ + L A++ + +L
Sbjct: 12 IVSRG---SPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPIL 68
Query: 216 IKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVG 275
+ T + F+NS DV + LH A
Sbjct: 69 LDIAEKTG---------------------NMREFINSPFRDV---YYRGQTALHIAIERR 104
Query: 276 NLQIVQMLVKRKFDINAQ--NRYFLP------------PMFFAIGMGRKHTHVAEYLLQQ 321
V++LV++ D++AQ R+F P P+ A H+ YL +
Sbjct: 105 CKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN--QPHIVHYLTEN 162
Query: 322 DSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITP 381
+ + + T
Sbjct: 163 GHKQAD-------------------------------------------LRRQDSRGNTV 179
Query: 382 LLFAAKHCD---------LQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYAC 432
L D + L+ K A + +A +++ S L A
Sbjct: 180 LHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG------LSPLMMAA 233
Query: 433 KHKNNIEMVKLLLLHGADVNDT 454
K I + + ++
Sbjct: 234 KT-GKIGIFQHIIRREIADAAA 254
Score = 59.8 bits (145), Expect = 5e-10
Identities = 34/194 (17%), Positives = 61/194 (31%), Gaps = 33/194 (17%)
Query: 460 QKPLAVAIQSGDFQ----IVKELQNYGAQIDKENYLKNKEAARIAHSTTELEERKKINDL 515
+ L + G ++ L + ++ E + + L ND
Sbjct: 6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKAL-LNLSAGRNDT 64
Query: 516 LKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRG-SALIYVAWKGYEEIVDLLLDNG 574
+ + LD + N + + D RG +AL + + V+LL++ G
Sbjct: 65 IPILLDIAEKT-GNMREFINSPFRD-------VYYRGQTALHIAIERRCKHYVELLVEKG 116
Query: 575 ADVNFK--------------SATGFTALHMACRFHSNDNIVRKLLHHGAYY---DMKDGK 617
ADV+ + G L +A + IV L +G +D
Sbjct: 117 ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH-IVHYLTENGHKQADLRRQD-S 174
Query: 618 TGKTPLKHAEAGKN 631
G T L A +
Sbjct: 175 RGNTVLHALVAIAD 188
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 93.4 bits (233), Expect = 6e-23
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 63 AVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEK 122
+ L+ G + D L A G V +L+ +GA+V +D+
Sbjct: 1 GSSHHHHHHSSGLVPRGS-HMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 123 GYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTD 173
G TPLHLA G+ +VK LL ADV A+ T N +ED +
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAE 107
Score = 83.4 bits (207), Expect = 1e-19
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 105 MVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVS 164
+ L+ G+++ L A G + V+ L++ ADV AK TP+ +
Sbjct: 9 HSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA 65
Query: 165 ANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELL 215
N E++ +L+E GA+V + F + ++ N + E+L
Sbjct: 66 RNGHL------EVVKLLLEAGADVXAQDKF-GKTAFDISIDNGNEDLAEIL 109
Score = 76.5 bits (189), Expect = 5e-17
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+ G+ + G L+ A G ++ V +L+ NGADV K G T LH+A R
Sbjct: 14 VPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHL 70
Query: 598 DNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLLH 639
+ +V+ LL GA +D K GKT + N D+ ++L
Sbjct: 71 E-VVKLLLEAGADVXAQD-KFGKTAFDISIDNGNEDLAEILQ 110
Score = 72.2 bits (178), Expect = 1e-15
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
L A + EV L++ G DV K ++G T L++A G ++V LL+ GA+V
Sbjct: 26 KKLLEAARAGQDDEVRILMANGA-DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFL 142
+D+ G T ++ GN+++ + L
Sbjct: 85 AQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 68.0 bits (167), Expect = 4e-14
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 360 IIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARS 419
++ R ++ ++ LL AA+ + L+ GA+V A+
Sbjct: 9 HSSGLVPRGSHMGSDLG---KKLLEAARAGQDDEVRILMANGADVA-----------AKD 54
Query: 420 SDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQ 479
+ + L A ++ ++E+VKLLL GADV +K + ++I +G+ + + LQ
Sbjct: 55 KN--GSTPLHLAARN-GHLEVVKLLLEAGADV-XAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 65.7 bits (161), Expect = 3e-13
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 559 AWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKT 618
+ + L+ G+ + + L A R D+ VR L+ +GA KD K
Sbjct: 2 SSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAAR-AGQDDEVRILMANGADVAAKD-KN 56
Query: 619 GKTPLKHAEAGKNRDIIDLL 638
G TPL A + +++ LL
Sbjct: 57 GSTPLHLAARNGHLEVVKLL 76
Score = 58.4 bits (142), Expect = 9e-11
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 18/105 (17%)
Query: 385 AAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLL 444
+ H + L+ +G+++ SD L A + + V++L
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG---------SDL-------GKKLLEAAR-AGQDDEVRIL 43
Query: 445 LLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKEN 489
+ +GADV PL +A ++G ++VK L GA + ++
Sbjct: 44 MANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Score = 54.9 bits (133), Expect = 2e-09
Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 41/143 (28%)
Query: 176 EIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLF 235
S L+ G+++ L A V +L+ AD
Sbjct: 8 HHSSGLVPRGSHMGSD----LGKKLLEAARAGQDDEVRILMANGADVA------------ 51
Query: 236 FAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNR 295
D + ++ LH A G+L++V++L++ D+ AQ++
Sbjct: 52 -----------------------AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88
Query: 296 YFLPPMFFAIGMGRKHTHVAEYL 318
+ +I G + +AE L
Sbjct: 89 FGKTAFDISIDNG--NEDLAEIL 109
Score = 45.6 bits (109), Expect = 3e-06
Identities = 26/143 (18%), Positives = 45/143 (31%), Gaps = 44/143 (30%)
Query: 435 KNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNK 494
++ L+ G+ + K L A ++G V+ L GA + K+K
Sbjct: 4 HHHHHHSSGLVPRGSHMGSDLG----KKLLEAARAGQDDEVRILMANGADVAA----KDK 55
Query: 495 E-------AARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVS 547
AAR H ++ LL +E GA V
Sbjct: 56 NGSTPLHLAARNGH--------LEVVKLL---------------------LEAGADVXAQ 86
Query: 548 SERRGSALIYVAWKGYEEIVDLL 570
+ +A G E++ ++L
Sbjct: 87 DKFGKTAFDISIDNGNEDLAEIL 109
Score = 44.9 bits (107), Expect = 6e-06
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 237 AIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRY 296
+ L + + DL L +A G V++L+ D+ A+++
Sbjct: 1 GSSHHHHHHSS-GLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 297 FLPPMFFAIGMGRKHTHVAEYLLQQ 321
P+ A G H V + LL+
Sbjct: 57 GSTPLHLAARNG--HLEVVKLLLEA 79
Score = 42.2 bits (100), Expect = 5e-05
Identities = 18/134 (13%), Positives = 34/134 (25%), Gaps = 51/134 (38%)
Query: 271 ACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPI 330
+ LV R + + + A G L+ +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLGK---KLLEAARAG--QDDEVRILMANGA------- 48
Query: 331 KRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCD 390
++ A+ + TPL AA++
Sbjct: 49 ---------------------------------------DVAAKDKNGSTPLHLAARNGH 69
Query: 391 LQSAKYLIQKGANV 404
L+ K L++ GA+V
Sbjct: 70 LEVVKLLLEAGADV 83
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 89.7 bits (224), Expect = 5e-22
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 58 TLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
T L A + + V+ LL G DVN K ++GRT L++A G ++V LL+ GA+VN
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKA 147
+D+ G TPLHLA G+ +VK LL A
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 89.7 bits (224), Expect = 6e-22
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 89 DGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKAD 148
+GRT L++A G ++V LL+ GA+VN +D+ G TPLHLA G+ +VK LL AD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 149 VRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGA 186
V AK TP+ + N E++ +L+E GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHL------EVVKLLLEAGA 92
Score = 72.8 bits (180), Expect = 6e-16
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 554 ALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDM 613
L A G+ E+V LLL+ GADVN K G T LH+A R + + +V+ LL GA +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR-NGHLEVVKLLLEAGADVNA 63
Query: 614 KDGKTGKTPLKHAEAGKNRDIIDLL 638
KD K G+TPL A + +++ LL
Sbjct: 64 KD-KNGRTPLHLAARNGHLEVVKLL 87
Score = 70.5 bits (174), Expect = 3e-15
Identities = 33/77 (42%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 534 VKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 593
VK +E GA VN + + L A G+ E+V LLL+ GADVN K G T LH+A R
Sbjct: 18 VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77
Query: 594 FHSNDNIVRKLLHHGAY 610
+ + +V+ LL GAY
Sbjct: 78 -NGHLEVVKLLLEAGAY 93
Score = 65.1 bits (160), Expect = 3e-13
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 15/104 (14%)
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIE 439
TPL AA++ L+ K L++ GA+VN A+ + R+ L A ++E
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-----------AKDKN--GRTPLHLAA-RNGHLE 49
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGA 483
+VKLLL GADVN + PL +A ++G ++VK L GA
Sbjct: 50 VVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 55.8 bits (136), Expect = 4e-10
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 41/125 (32%)
Query: 123 GYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLI 182
G TPLHLA G+ +VK LL ADV AK D N
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK--------------------DKN------- 34
Query: 183 ENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNS 242
+PLH A +L VV+LL++ AD N K + P L A +
Sbjct: 35 -------------GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP-LHLAARNGH 80
Query: 243 VKIVE 247
+++V+
Sbjct: 81 LEVVK 85
Score = 52.4 bits (127), Expect = 7e-09
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
++NA+ + TPL AA++ L+ K L++ GA+VN A+ + R+ L
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-----------AKDKN--GRTPLH 73
Query: 430 YACKHKNNIEMVKLLLLHGA 449
A + ++E+VKLLL GA
Sbjct: 74 LAAR-NGHLEVVKLLLEAGA 92
Score = 50.8 bits (123), Expect = 3e-08
Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 48/135 (35%)
Query: 268 LHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVN 327
LH A G+L++V++L++ D+NA+++ P+ A G H V + LL+ +
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HLEVVKLLLEAGA---- 59
Query: 328 LPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAK 387
++NA+ + TPL AA+
Sbjct: 60 ------------------------------------------DVNAKDKNGRTPLHLAAR 77
Query: 388 HCDLQSAKYLIQKGA 402
+ L+ K L++ GA
Sbjct: 78 NGHLEVVKLLLEAGA 92
Score = 49.3 bits (119), Expect = 9e-08
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 234 LFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQ 293
L A + +++V+ L DV+ D + + LH A G+L++V++L++ D+NA+
Sbjct: 6 LHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 294 NRYFLPPMFFAIGMGRKHTHVAEYLLQQ 321
++ P+ A G H V + LL+
Sbjct: 65 DKNGRTPLHLAARNG--HLEVVKLLLEA 90
Score = 48.1 bits (116), Expect = 2e-07
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 425 RSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQ 484
R+ L A + ++E+VKLLL GADVN + PL +A ++G ++VK L GA
Sbjct: 3 RTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 485 IDKEN 489
++ ++
Sbjct: 61 VNAKD 65
Score = 40.4 bits (96), Expect = 1e-04
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 584 GFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
G T LH+A R + + +V+ LL GA + KD K G+TPL A + +++ LL
Sbjct: 2 GRTPLHLAAR-NGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLL 54
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 95.5 bits (237), Expect = 1e-21
Identities = 45/320 (14%), Positives = 99/320 (30%), Gaps = 58/320 (18%)
Query: 7 HRRNSGLVHSVKESSYRHHHLFSEIMFSEEDAFGYFLQGIINSSSAKSV-ELTLLCSAVW 65
+ V + E + ++F E L ++ +++ +
Sbjct: 46 MKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF 105
Query: 66 DNKIREVEFLLSTGDHDVNEKL-QDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGY 124
D+ ++EV ++N + + G T L+ ++V L+ HG+N D G
Sbjct: 106 DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE 165
Query: 125 TPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIEN 184
+ L A N + D+ ++L
Sbjct: 166 SCLVKAVKSVN-----------------------------------NYDSGTFEALLDYL 190
Query: 185 GANVREKMPFTD---FSPLHFAVVKKNLS------------VVELLIKCKADTNLIVKVN 229
+ + D + LH ++ ++ ++ ++K +
Sbjct: 191 YPCLILE----DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE 246
Query: 230 QEPLLFFAIESNSVKIVEAFLNSKNFDVSIS--DGDLNSLLHKACHVGNLQIVQMLVKRK 287
+E I+E ++ D + ++ L+ A +GN+ IV L+
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306
Query: 288 FDINAQNRYFLPPMFFAIGM 307
D N+ L P+ F G+
Sbjct: 307 ADPFIANKSGLRPVDFGAGL 326
Score = 92.4 bits (229), Expect = 1e-20
Identities = 60/329 (18%), Positives = 113/329 (34%), Gaps = 36/329 (10%)
Query: 305 IGMGRKHTHVAEYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRL-----DQ 359
R + + S ++ P+K L V++ + K+ + ++RL +
Sbjct: 18 DDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQE 77
Query: 360 IIKRIIDRTENINAEGDDMITPLLFAA-KHCDLQSAKYLIQKGANVNLTETQKAFISDAR 418
+ + + + N N+EG + + N+N+
Sbjct: 78 MPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIP----------- 126
Query: 419 SSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSG---DFQIV 475
D + L + N+E+VK L+ HG++ + + L A++S D
Sbjct: 127 -VDEHGNTPLHWLTS-IANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKSVNNYDSGTF 183
Query: 476 KELQNY-GAQIDKENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEV 534
+ L +Y + L++ I H + K LD L V
Sbjct: 184 EALLDYLYPCLI----LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW------IV 233
Query: 535 KKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF 594
KK E + + E +DL +N + + G T L++A R
Sbjct: 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 293
Query: 595 HSNDNIVRKLLHHGAYYDMKDGKTGKTPL 623
N +IV LL +GA + + K+G P+
Sbjct: 294 G-NISIVDALLDYGADPFIAN-KSGLRPV 320
Score = 78.1 bits (192), Expect = 8e-16
Identities = 50/304 (16%), Positives = 104/304 (34%), Gaps = 15/304 (4%)
Query: 168 SEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVK 227
S+ + +I+ L N E+ + L + + + L ++ N
Sbjct: 36 SDFLSSPLKIMKALPSPVVNDNEQ-KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGG 94
Query: 228 VNQEPLLFFAIESNSVKIVEAFLNSK-NFDVSISDGDLNSLLHKACHVGNLQIVQMLVKR 286
+ + + +S ++ +AF N++ N ++ + D N+ LH + NL++V+ LVK
Sbjct: 95 SSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPV-DEHGNTPLHWLTSIANLELVKHLVKH 153
Query: 287 KFDINAQNRYFLPPMFFAIGMGRKHTH-VAEYLLQQDSINVNLPIKRPNLLLDTVMSLKD 345
+ + + A+ + E LL + L +L ++
Sbjct: 154 GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 213
Query: 346 PKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVN 405
S LD ++ I+ + G + S + +
Sbjct: 214 MTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII- 272
Query: 406 LTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAV 465
+ +A+ D + L A + NI +V LL +GAD +NK +P+
Sbjct: 273 -----ANML-NAQ--DSNGDTCLNIAAR-LGNISIVDALLDYGADPF-IANKSGLRPVDF 322
Query: 466 AIQS 469
Sbjct: 323 GAGL 326
Score = 70.8 bits (173), Expect = 2e-13
Identities = 25/206 (12%), Positives = 64/206 (31%), Gaps = 28/206 (13%)
Query: 445 LLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAHSTT 504
++ ++ ++ L +Q F ++E+ + + + +
Sbjct: 45 IMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVS 104
Query: 505 ELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRG-SALIYVAWKGY 563
+++ND +N+ + G + L ++
Sbjct: 105 FDSLLQEVNDAF---------------------PNTQLNLNIPVDEHGNTPLHWLTSIAN 143
Query: 564 EEIVDLLLDNGADVNFKSATGFTALHMACRFHSN---DNIVRKLLHHGAYYDMKDGKTGK 620
E+V L+ +G++ + G + L A + +N L + ++D +
Sbjct: 144 LELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED-SMNR 202
Query: 621 TPLKHA--EAGKNRDIIDLLHLIDNL 644
T L H +G + +D L
Sbjct: 203 TILHHIIITSGMTGCSAAAKYYLDIL 228
Score = 42.7 bits (100), Expect = 3e-04
Identities = 14/120 (11%), Positives = 38/120 (31%)
Query: 519 NLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVN 578
D + S+ +K N + + L + + +E+ L ++ ++ N
Sbjct: 31 THDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRN 90
Query: 579 FKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLL 638
+ + + + ++ + G TPL + N +++ L
Sbjct: 91 SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL 150
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 94.2 bits (234), Expect = 7e-21
Identities = 36/403 (8%), Positives = 91/403 (22%), Gaps = 78/403 (19%)
Query: 211 VVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNSLLHK 270
+ + + + ++ + L S I + +
Sbjct: 49 AIHIFLPGTKN-------MEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAI 101
Query: 271 ACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDSINVNLPI 330
L + +L+ + A G H HV L + +
Sbjct: 102 TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG--HLHVLNRLCELAPTEIM--- 156
Query: 331 KRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCD 390
I AE AA++
Sbjct: 157 --------------------------------------AMIQAENY---HAFRLAAENGH 175
Query: 391 LQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGAD 450
L L + ++ ++ A ++A + + ++ LL
Sbjct: 176 LHVLNRLCELAPTEATA--------MIQAENYY---AFRWAAVGRGHHNVINFLLDCPVM 224
Query: 451 VNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAHSTTELEERK 510
+ + G+ + + + ++ + + E
Sbjct: 225 LAYAEIH--------EFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 276
Query: 511 KINDLLKLNLD--FLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVD 568
+ +L+ + + ++ I+ A L G +
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 336
Query: 569 LLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYY 611
LLL + + A + ++ D + L H ++
Sbjct: 337 LLLSIPSVLALTKANNY---YINETGGRLD-LRAVALEHHHHH 375
Score = 88.1 bits (218), Expect = 7e-19
Identities = 43/391 (10%), Positives = 97/391 (24%), Gaps = 92/391 (23%)
Query: 29 SEIMFSEEDAFGYFLQGIINSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQ 88
S + S ++A FL G N + LLC + D ++K
Sbjct: 40 SLMTLSYKEAIHIFLPGTKNMEQVRQ----LLCLYYAHYNRNAKQLW-----SDAHKKGI 90
Query: 89 DGRTALYMAILQG---LYKMVTLLIHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSK 145
++A + G + LL+ V + Y LA G+ +++ L
Sbjct: 91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 150
Query: 146 KADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVV 205
A ++ + ++ A
Sbjct: 151 APTE----------------------------------IMAMIQAE----NYHAFRLAAE 172
Query: 206 KKNLSVVELLIKCKADTNL--IVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGD 263
+L V+ L + I N + A+ ++ L+
Sbjct: 173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD--------CPVM 224
Query: 264 LNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHVAEYLLQQDS 323
L G + + + + + + +
Sbjct: 225 LAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----------------------DAFKLSN 262
Query: 324 INVNLPI------KRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEGDD 377
+ + + +L ++ D ++ + IK + D
Sbjct: 263 PDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP----TATIPGD 318
Query: 378 MITPLLFAAKHCDLQSAKYLIQKGANVNLTE 408
L A + + + L+ + + LT+
Sbjct: 319 ANELLRLALRLGNQGACALLLSIPSVLALTK 349
Score = 58.4 bits (141), Expect = 3e-09
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 19/114 (16%)
Query: 84 NEKLQDGRTALYMAILQGLYKMVTLL--------IHHGANVNDRDEKGYTPLHLACYLGN 135
+ G L I + ++ + I A L LA LGN
Sbjct: 272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN 331
Query: 136 KNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTN-EIISMLIENGANV 188
+ LLS + + L + N + T ++ ++ +E+ +
Sbjct: 332 QGACALLLSIPSVL----------ALTKANNYYINETGGRLDLRAVALEHHHHH 375
Score = 54.6 bits (131), Expect = 6e-08
Identities = 19/197 (9%), Positives = 50/197 (25%), Gaps = 22/197 (11%)
Query: 72 VEFLLSTG--DHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVNDRDEKGYTPLHL 129
+ L + + ++ + A+ +G + ++ L+ + + +
Sbjct: 179 LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEK 238
Query: 130 ACYLGNKNIVKFLLSKKADVRAKCSMMVTPIL----------AVSANMSEDSTDTNEIIS 179
V L + V ++ + + + + I
Sbjct: 239 YVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIR 298
Query: 180 MLI-----ENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLL 234
L+ + A +P L A+ N LL+ + L N
Sbjct: 299 FLLSIPGIKALAPT-ATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN----Y 353
Query: 235 FFAIESNSVKIVEAFLN 251
+ + + L
Sbjct: 354 YINETGGRLDLRAVALE 370
Score = 53.0 bits (127), Expect = 2e-07
Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 14/126 (11%)
Query: 513 NDLLKLNLDFLKNVRSNK----------YDEVKKNIEDGACVNVSSERRGSALIYVAWKG 562
+ + + L KN+ + K+ D + SE
Sbjct: 47 KEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSS 106
Query: 563 YEEIVDLLLDNGADVNFKSATGFTALHMACRF-HSNDNIVRKLLHHGAYYDMKDGKT-GK 620
+ + LLL + V A + A +A H +++ +L M +
Sbjct: 107 ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHL--HVLNRLCELAPTEIMAMIQAENY 164
Query: 621 TPLKHA 626
+ A
Sbjct: 165 HAFRLA 170
Score = 49.9 bits (119), Expect = 1e-06
Identities = 21/198 (10%), Positives = 54/198 (27%), Gaps = 29/198 (14%)
Query: 435 KNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKNK 494
+ E + + L ++ + L + + K+L + + ++ +
Sbjct: 44 LSYKEAIHIFLPGTKNMEQV------RQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICF 97
Query: 495 EAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDE-------------VKKNIEDG 541
AA + LL + V + + + + E
Sbjct: 98 VAAITGC----SSALDTLCLLLTSDEI--VKVIQAENYQAFRLAAENGHLHVLNRLCELA 151
Query: 542 ACVNVSSERRG--SALIYVAWKGYEEIVDLLLDNGADVNFK--SATGFTALHMACRFHSN 597
++ + A A G+ +++ L + A + A A +
Sbjct: 152 PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH 211
Query: 598 DNIVRKLLHHGAYYDMKD 615
N++ LL +
Sbjct: 212 HNVINFLLDCPVMLAYAE 229
Score = 45.7 bits (108), Expect = 3e-05
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 10/100 (10%)
Query: 57 LTLLCSAVWDNKIREVE---FLLSTGD----HDVNEKLQDGRTALYMAILQGLYKMVTLL 109
+L + + N ++ FLLS D L +A+ G LL
Sbjct: 279 FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 338
Query: 110 IHHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADV 149
+ + + Y ++ G ++ L
Sbjct: 339 LSIPSVLALTKANNY---YINETGGRLDLRAVALEHHHHH 375
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 89.7 bits (222), Expect = 2e-18
Identities = 88/432 (20%), Positives = 153/432 (35%), Gaps = 145/432 (33%)
Query: 3 EEISHRRNSGLVHSVKESSYRHHHLF-----SEIMFSE--E--DAFGYFLQGIINSSSAK 53
+ NS L +V E + + +F ++ F E + + + +I S+
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 54 SVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTA---LYMA----------ILQ 100
L+ L D E + + G ++ E L++ Y+ ++Q
Sbjct: 195 ---LSELIRTTLD-----AEKVFTQG-LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 101 GLYKMVTLLIHHGANVNDRDEKGYTPLHLACYL-G----NKNIV------------KFL- 142
+ +VT + G+TP L YL G ++ +V F
Sbjct: 246 LAHYVVTAKLL-----------GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 143 LSKKA-------DVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFT 195
+KA VR P ++ ++ EDS +EN E +P
Sbjct: 295 SVRKAITVLFFIGVRCYE---AYPNTSLPPSILEDS----------LENN----EGVP-- 335
Query: 196 DFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQE-PLLFFAIESNSVKIVEAFLNS-K 253
SP+ ++ NL+ ++ + + K N P V+I + +N K
Sbjct: 336 --SPM-LSI--SNLTQEQVQ-------DYVNKTNSHLP------AGKQVEI--SLVNGAK 375
Query: 254 NFDVSISDGD------LNSLLHKACHVGNLQIVQMLV---KRKFDINAQNRYFLP---PM 301
N VS G LN L KA L Q + +RK NR FLP P
Sbjct: 376 NLVVS---GPPQSLYGLNLTLRKAKAPSGLD--QSRIPFSERKLKF--SNR-FLPVASP- 426
Query: 302 FFAIGMGRKHTHV---AEYLLQQDSINVNLPIKRPNLLL---DTVMSLKDPKVMSQTQIK 355
F H+H+ A L+ +D + N+ ++ + DT D +V+S + +
Sbjct: 427 F--------HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF-DGSDLRVLSGSISE 477
Query: 356 RL-DQIIKRIID 366
R+ D II+ +
Sbjct: 478 RIVDCIIRLPVK 489
Score = 69.3 bits (169), Expect = 3e-12
Identities = 94/652 (14%), Positives = 188/652 (28%), Gaps = 207/652 (31%)
Query: 47 INSSSAKSVELTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMV 106
+++ S + + L+ + E L+ T + +LQ+ + +G
Sbjct: 1 MDAYSTRPLTLS-------HGSL-EHVLLVPTASFFIASQLQEQFNKILPEPTEGF---- 48
Query: 107 TLLIHHGANVNDRDEKGYTPLHL-ACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSA 165
D++ TP L +LG ++ S
Sbjct: 49 -----------AADDEPTTPAELVGKFLG------YVSSLVEP----------------- 74
Query: 166 NMSEDSTDTNEIISMLIENGANVREKMPF-TDF---SPLHFAVVK------KNLSVVELL 215
++++++ + F + + +H K L + L
Sbjct: 75 ---SKVGQFDQVLNLCLTE---------FENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 216 IKC----KADTNLIVKVNQEPLLFFAIESNSVKIVEAF----LNSKNFD-----VSISDG 262
IK + LF A+ + ++V F F+
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 263 DLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGM-------GRKHTHVA 315
+ L+ + + + L++ D F G+ +T
Sbjct: 183 LVGDLIKFS-----AETLSELIRTTLDAEK---------VFTQGLNILEWLENPSNTPDK 228
Query: 316 EYLLQQDSINVNLPIKRPNLLLDTVMSLKDPKVMSQTQI-------KRLDQIIKRIIDRT 368
+YLL SI ++ P+ + + Q+ K L +
Sbjct: 229 DYLL---SIPISCPL----IGV--------------IQLAHYVVTAKLLGFTPGELRSYL 267
Query: 369 ENINAEGDDMITPLLFAA-------KHCDLQSAKYLIQKGANVNLTETQKAFISDARSSD 421
+ ++T + A ++ L G +A+ + +
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV-----RCYEAYPNTSLPP- 321
Query: 422 FCFRSALQYACKHKNNIE--MVKLLLLHGADVN------DTSNK--PKQKPLAVAIQSGD 471
S L+ + ++ + M L + + +N P K + +++ +G
Sbjct: 322 ----SILEDSLENNEGVPSPM---LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 472 FQIV-----KELQNYGAQIDKENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNV 526
+V + L + K + +RI S ERK LK + FL V
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS-----ERK-----LKFSNRFL-PV 423
Query: 527 RS---NKY--DEVKKNIEDGACVNVSSERRGSAL---IYVAWKGY----------EEIVD 568
S + +D NVS + +Y + G E IVD
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSF--NAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481
Query: 569 LLLDNGADVNFKSATGFTALHMACRF-HSNDNIVRKLLHHGAYYDMKDGKTG 619
++ V +++ T F A H+ F + + L H KDG TG
Sbjct: 482 CIIR--LPVKWETTTQFKATHILD-FGPGGASGLGVLTHR-----NKDG-TG 524
Score = 37.0 bits (85), Expect = 0.027
Identities = 29/151 (19%), Positives = 45/151 (29%), Gaps = 52/151 (34%)
Query: 563 YE--EIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA---------YY 611
Y+ + + + AD +FK GF+ L + +N V +H G Y
Sbjct: 1636 YKTSKAAQDVWNR-ADNHFKDTYGFSILDI-----VINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 612 DMK-----DGKTGKTPLKHAEAGKNRDII-----DLLHLIDNLFASVTNPYDPNVYHRIE 661
M DGK + + LL T P +
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF-----TQP-------ALT 1737
Query: 662 LMNSAKQLGLVHVFEIMK----VVKN--YAG 686
LM A FE +K + + +AG
Sbjct: 1738 LMEKA-------AFEDLKSKGLIPADATFAG 1761
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.6 bits (190), Expect = 9e-15
Identities = 80/598 (13%), Positives = 186/598 (31%), Gaps = 162/598 (27%)
Query: 166 NMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLI 225
E +I+S+ + + D + +++ K ++ +I K
Sbjct: 10 ETGEHQYQYKDILSVFEDA---FVDNFDCKDVQDMPKSILSK--EEIDHIIMSKDA---- 60
Query: 226 VKVNQEPLLFFAIESNSVKIVEAFLNS---KNFD-------VSISDGDLNSLLHKACHV- 274
V+ LF+ + S ++V+ F+ N+ + + ++
Sbjct: 61 --VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 275 ---GNLQIVQMLVKRKFDINAQNR--YFLPPMFFAI--GMG--RKHTHVAEYLLQQDSIN 325
N + V R + L P + G+ K + + +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD-VCLSYKVQ 177
Query: 326 VNLP----------IKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTENINAEG 375
+ P +L+ M Q + ++D D + NI
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLE----------MLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 376 DDMITPL--LFAAK---HC-----DLQSAKYLIQKGANVN---LTETQKAFISDARSSDF 422
+ L L +K +C ++Q+AK N++ L T+ ++D S+
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--NAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 423 CFRSALQYACKHKNNIEMVKLLLLH-GADVNDTSNKPKQK----PLAVAIQSGDFQIVKE 477
+L + E+ LLL + D P++ P ++I I +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PREVLTTNPRRLSI------IAES 336
Query: 478 LQNYGAQIDKENYLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKN 537
+++ A D N+ K+ +++ +L+ L+ E +K
Sbjct: 337 IRDGLATWD--NWKHV--------------NCDKLTTIIESSLNVLEP------AEYRKM 374
Query: 538 IEDGAC----VNVSSERRGSALIYVAWKGY-----EEIVDLLLDNG-ADVNFKSAT-GFT 586
+ + ++ + L+ + W +V+ L + K +T
Sbjct: 375 FDRLSVFPPSAHIPTI-----LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 587 ALHMACRFHSNDNIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLLHL-IDNLF 645
++++ + + LH ++ + H K D DL+ +D F
Sbjct: 430 SIYLELKVKLEN---EYALH-------------RSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 646 ASVTNPYDPNVYHRIELMNSAKQLGLVHVFEIMKVVKNYAGETLIGVARKMNYSFLER 703
Y +H + + + + +F ++ + +++ FLE+
Sbjct: 474 ------YSHIGHH----LKNIEHPERMTLFRMV-----F-----------LDFRFLEQ 505
Score = 64.5 bits (156), Expect = 1e-10
Identities = 88/696 (12%), Positives = 196/696 (28%), Gaps = 217/696 (31%)
Query: 22 YRHHHL---FSEIMFSEEDAFGYFLQGIINSSSAKSVELTLLCSAVWDNKIREVEFLLST 78
+ HHH+ E + +D F +++ K V+ + S + E++ ++ +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSIL---SKEEIDHIIMS 57
Query: 79 GDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGAN-----VNDRDEKGY----TPLHL 129
D G ++ L+ V + Y +P+
Sbjct: 58 KDAV-----------------SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 130 ACYLGNKNIVKFLLSKKA---DVRAKCSMMVT---PILAVSANMSEDSTDTNEII----- 178
+ ++ + D + V+ P L + + E N +I
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 179 ---SMLIENGAN---VREKMPFTDFSPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEP 232
+ + + V+ KM F F L+ C + ++ + +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFW-LNLK-------------NCNSPETVLEMLQK-- 204
Query: 233 LLFFAIESNSVKIVEAFLNSKNFDVSISDGD--LNSLL----HKAC-----HVGNLQIV- 280
L + I+ N + +S N + I L LL ++ C +V N +
Sbjct: 205 -LLYQIDPNWTSRSD---HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 281 ------QMLV----KRKFD-INAQNRYFLPPMFFAIGMGRKHTH--VAEYLLQQDSINVN 327
++L+ K+ D ++A + ++ + + +YL + +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ---D 317
Query: 328 LP--IKRPNLLLDTVM--SLKDPKVMS----QTQIKRLDQIIKRIIDRTENINAEGDDMI 379
LP + N +++ S++D +L II+ ++ ++
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-----------VL 366
Query: 380 TPLLFAAKHCDLQSAKYLIQKGANV----------NLTETQKAFISDARSSDFCFRSALQ 429
P + L + A++ ++ ++ + + S ++
Sbjct: 367 EPAEYRKMFDRL----SVFPPSAHIPTILLSLIWFDVIKSDVMVVVN----KLHKYSLVE 418
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPL-AVAIQSGDFQIVKELQNYGAQIDKE 488
K + + + + L + + I K +
Sbjct: 419 ---KQPKE----STISIPSIYLELKVKLENEYALHRSIVDH--YNIPKTFDSDDLIPPYL 469
Query: 489 -NY--------LKNKE------------------AARIAHSTTELEERKKINDLLKLNLD 521
Y LKN E +I H +T I + L
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL---QQ 526
Query: 522 FLKNVRSNKYDEVKKNIEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKS 581
Y K I D ++ + YE +V+ +LD
Sbjct: 527 L------KFY---KPYICD-------NDPK-----------YERLVNAILD--------- 550
Query: 582 ATGFTALHMACRFHSND-NIVRKLLHH--GAYYDMK 614
F S +++R L A ++
Sbjct: 551 ---FLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 32.9 bits (74), Expect = 0.50
Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 29/186 (15%)
Query: 1 MIEEISHRRNSGLVHSVKESSYRHHHLFSEIMFSEEDAFGYFL-QGIINS-SSAKSVELT 58
++ H+ S + KES+ ++ E+ E+ Y L + I++ + K+ +
Sbjct: 406 VVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLENE--YALHRSIVDHYNIPKTFDSD 462
Query: 59 LLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVND 118
L D + G H + R L+ + + + H N
Sbjct: 463 DLIPPYLDQYF--YSHI---GHH-LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 119 RDEKGYTPLHLACYLGN------------KNIVKFLLSKKAD-VRAKCSMMVTPILAVSA 165
T L Y I+ FL + + + +K + ++ L
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL---- 572
Query: 166 NMSEDS 171
M+ED
Sbjct: 573 -MAEDE 577
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 73.3 bits (179), Expect = 4e-14
Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 7/146 (4%)
Query: 59 LLCSAVWDNKIREVEFLLSTG-DHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANVN 117
L ++ + + L+ G D + QD T L A L+ +GANVN
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262
Query: 118 DRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI-LAVSANMSEDSTDTNE 176
D G PLH A LG+ + L + AD+ A+ S P+ +A+ + D
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA----NADIVT 318
Query: 177 IISMLIENGANVREKMPFTD-FSPLH 201
++ + A + + + +
Sbjct: 319 LLRLAKMREAEAAQGQAGDETYLDIF 344
Score = 67.5 bits (164), Expect = 4e-12
Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 541 GACVN--VSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSND 598
GA VN + + LI + LL NGA+VN + G LH A +
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI-LGHT 281
Query: 599 NIVRKLLHHGAYYDMKDGKTGKTPLKHAEAGKNRDIIDLLHL 640
+ L GA +D G+ PL A N DI+ LL L
Sbjct: 282 GLACLFLKRGADLGARD-SEGRDPLTIAMETANADIVTLLRL 322
Score = 55.2 bits (132), Expect = 4e-08
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 15/109 (13%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
N G D TPL+ A L + ++L+Q GANVN ++ R L
Sbjct: 227 NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAG-------------RGPLH 273
Query: 430 YACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKEL 478
+A + + L L GAD+ + + PL +A+++ + IV L
Sbjct: 274 HATIL-GHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLL 320
Score = 45.9 bits (108), Expect = 3e-05
Identities = 27/203 (13%), Positives = 63/203 (31%), Gaps = 17/203 (8%)
Query: 345 DPKVMSQTQIKRLDQIIKRIIDRTENINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANV 404
P V + I+ ++ + + L + + GA+V
Sbjct: 167 QPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADV 226
Query: 405 NLTETQKAFISDARSSDFCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLA 464
N + L A N++ + LL +GA+VN + + PL
Sbjct: 227 NWVN-----------GGQDNATPLIQATAA-NSLLACEFLLQNGANVNQA-DSAGRGPLH 273
Query: 465 VAIQSGDFQIVKELQNYGAQIDKENYLKNKEAARIAH--STTELEERKKINDLLKLNLDF 522
A G + GA + + + ++ IA + ++ ++ + +
Sbjct: 274 HATILGHTGLACLFLKRGADLGARDS-EGRDPLTIAMETANADIVTLLRLAKMREAEAAQ 332
Query: 523 LKNVRSNKYDEVKKNIEDGACVN 545
+ Y ++ ++ A +
Sbjct: 333 GQAG-DETYLDIFRDFSLMASDD 354
Score = 43.2 bits (101), Expect = 2e-04
Identities = 35/186 (18%), Positives = 58/186 (31%), Gaps = 43/186 (23%)
Query: 87 LQDGRTALYMAILQGLYKMVTLLIHHGANVN--DRDEKGYTPLHLACYLGNKNIVKFLLS 144
L G + + + HGA+VN + + TPL A + +FLL
Sbjct: 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLL- 255
Query: 145 KKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAV 204
+NGANV + PLH A
Sbjct: 256 --------------------------------------QNGANVNQADSAG-RGPLHHAT 276
Query: 205 VKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDL 264
+ + + L +K AD ++P L A+E+ + IV +K + + G
Sbjct: 277 ILGHTGLACLFLKRGADLGARDSEGRDP-LTIAMETANADIVTLLRLAKMREAEAAQGQA 335
Query: 265 NSLLHK 270
+
Sbjct: 336 GDETYL 341
Score = 39.0 bits (90), Expect = 0.005
Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 3/142 (2%)
Query: 144 SKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMP-FTDFSPLHF 202
S ++ + + + + ++ + +GA+V + +PL
Sbjct: 182 SLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQ 241
Query: 203 AVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDG 262
A +L E L++ A+ N L A + FL D+ D
Sbjct: 242 ATAANSLLACEFLLQNGANVN-QADSAGRGPLHHATILGHTGLACLFLKRGA-DLGARDS 299
Query: 263 DLNSLLHKACHVGNLQIVQMLV 284
+ L A N IV +L
Sbjct: 300 EGRDPLTIAMETANADIVTLLR 321
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 72.0 bits (176), Expect = 6e-14
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
L L +V + V+FL+ +++++ G TAL+ L + + LL+ A++
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSG-NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKC 153
+E G TPL +A L +++ + L +
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSH 268
Score = 70.0 bits (171), Expect = 2e-13
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 11/122 (9%)
Query: 61 CSAVWDNKIREVEFLLSTGDHDVNEKL------QDGRTALYMAILQG---LYKMVTLLIH 111
C AV I + + G D+ EK+ + TAL++A+ +V L+
Sbjct: 135 CEAVKTRDIFGLLQAYADG-VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 193
Query: 112 HGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI-LAVSANMSED 170
+ N++ + KG T LH C N +K LL KA + TP+ +A
Sbjct: 194 NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC 253
Query: 171 ST 172
Sbjct: 254 EE 255
Score = 64.6 bits (157), Expect = 1e-11
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 558 VAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGK 617
+ IVD L+ N +++ ++ G TALH C N ++ LL A ++ +
Sbjct: 179 SVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL-TDNAECLKLLLRGKASIEIANES 237
Query: 618 TGKTPLKHAEAGKNRDIIDLLHL 640
G+TPL A+ K+ +LL
Sbjct: 238 -GETPLDIAKRLKHEHCEELLTQ 259
Score = 57.3 bits (138), Expect = 5e-09
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 18/109 (16%)
Query: 376 DDMITPLLFAAKHCD---LQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYAC 432
+ T L A + D L +L+Q N++ + +AL Y C
Sbjct: 167 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG-------------STALHYCC 213
Query: 433 KHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNY 481
+N E +KLLL A + +N+ + PL +A + + L
Sbjct: 214 LT-DNAECLKLLLRGKASIE-IANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 48.8 bits (116), Expect = 2e-06
Identities = 28/183 (15%), Positives = 56/183 (30%), Gaps = 51/183 (27%)
Query: 93 ALYMAILQGLYKMVTLLIHHGANVN------DRDEKGYTPLHLACYLGNKNIVKFLLSKK 146
+L A+ + G ++ + E T LHLA ++ +
Sbjct: 133 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL------- 185
Query: 147 ADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSPLHFAVVK 206
I+ L++N N+ ++ + LH+ +
Sbjct: 186 -----------------------------HIVDFLVQNSGNLDKQTGKGS-TALHYCCLT 215
Query: 207 KNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVSISDGDLNS 266
N ++LL++ KA + + + PL A E + + G NS
Sbjct: 216 DNAECLKLLLRGKASIEIANESGETPLD-IAKRLKHEHCEELLTQALS-------GRFNS 267
Query: 267 LLH 269
+H
Sbjct: 268 HVH 270
Score = 46.1 bits (109), Expect = 2e-05
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 538 IEDGACVNVSSERRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSN 597
+++ ++ + + +AL Y E + LLL A + + +G T L +A R
Sbjct: 192 VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 251
Query: 598 D 598
Sbjct: 252 H 252
Score = 41.9 bits (98), Expect = 4e-04
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Query: 203 AVVKKNLSVVELLIKCKADTNLIVKV-----NQEPLLFFAIES---NSVKIVEAFLNSKN 254
AV +++ + D + + E L A+ S S+ IV+ FL +
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVD-FLVQNS 195
Query: 255 FDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKHTHV 314
++ G ++ LH C N + +++L++ K I N P+ A + H H
Sbjct: 196 GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLK--HEHC 253
Query: 315 AEYLLQ 320
E L Q
Sbjct: 254 EELLTQ 259
Score = 39.6 bits (92), Expect = 0.002
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 570 LLDNGADVNFKSAT------GFTALHMACR--FHSNDNIVRKLLHHGAYYDMKDGKTGKT 621
+G D+ K TALH+A R ++ +IV L+ + D + GK G T
Sbjct: 149 AYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK-GST 207
Query: 622 PLKHAEAGKNRDIIDLL 638
L + N + + LL
Sbjct: 208 ALHYCCLTDNAECLKLL 224
Score = 32.3 bits (73), Expect = 0.49
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 14/77 (18%)
Query: 370 NINAEGDDMITPLLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQ 429
N++ + T L + + + K L++ A++ + + L
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESG-------------ETPLD 243
Query: 430 YACKHKNNIEMVKLLLL 446
A K + +LL
Sbjct: 244 IA-KRLKHEHCEELLTQ 259
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 71.6 bits (175), Expect = 1e-13
Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 11/122 (9%)
Query: 61 CSAVWDNKIREVEFLLSTGDHDVNEKL------QDGRTALYMAILQG---LYKMVTLLIH 111
+A+ + + V + G D + L L++A+ +V +I
Sbjct: 156 WTAICNRDLLSVLEAFANGQ-DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 214
Query: 112 HGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPI-LAVSANMSED 170
+G +++ + G T LH A + +K LL +A V T + +A + E
Sbjct: 215 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 274
Query: 171 ST 172
Sbjct: 275 EE 276
Score = 69.6 bits (170), Expect = 4e-13
Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 11/143 (7%)
Query: 507 EERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSERRGS---------ALIY 557
E + + + V + +G + +
Sbjct: 140 VEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVK 199
Query: 558 VAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGAYYDMKDGK 617
VA + +VD ++ NG ++ K+A G TALH A ++ + ++ LL A + +
Sbjct: 200 VANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL-YNQPDCLKLLLKGRALVGTVN-E 257
Query: 618 TGKTPLKHAEAGKNRDIIDLLHL 640
G+T L A +++ +LL
Sbjct: 258 AGETALDIARKKHHKECEELLEQ 280
Score = 68.1 bits (166), Expect = 1e-12
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
L L + V+F++ G ++ K DG TAL+ A L + LL+ A V
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGG-HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKC 153
+E G T L +A +K + L +A A
Sbjct: 253 GTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFP 289
Score = 53.8 bits (129), Expect = 6e-08
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 20/134 (14%)
Query: 365 IDRTENINAEGDDMITPLLFAAKHCD---LQSAKYLIQKGANVNLTETQKAFISDARSSD 421
+ L A K + L ++IQ G +++
Sbjct: 177 FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG---------- 226
Query: 422 FCFRSALQYACKHKNNIEMVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNY 481
+AL YA + N + +KLLL A V T N+ + L +A + + + L+
Sbjct: 227 ---NTALHYAALY-NQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQ- 280
Query: 482 GAQIDKENYLKNKE 495
AQ + + +
Sbjct: 281 -AQAGTFAFPLHVD 293
Score = 51.9 bits (124), Expect = 3e-07
Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 51/191 (26%)
Query: 85 EKLQDGRTALYMAILQGLYKMVTLLIHHGANVN------DRDEKGYTPLHLACYLGNKNI 138
+ L+ AI V +G + D LHLA + N+
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205
Query: 139 VKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFS 198
+ ++ +I+NG ++ K + +
Sbjct: 206 L------------------------------------PLVDFIIQNGGHLDAKAADGN-T 228
Query: 199 PLHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPLLFFAIESNSVKIVEAFLNSKNFDVS 258
LH+A + ++LL+K +A + + + L A + + + E ++
Sbjct: 229 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD-IARKKHHKECEELLEQAQA---- 283
Query: 259 ISDGDLNSLLH 269
G LH
Sbjct: 284 ---GTFAFPLH 291
Score = 40.0 bits (93), Expect = 0.002
Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 12/136 (8%)
Query: 198 SPLHFAVVKKNLSVVELLIKCKADTNLIVKVNQ-----EPLLFFAIES---NSVKIVEAF 249
L A+ ++L V D + E +L A++ S+ +V+ F
Sbjct: 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVD-F 211
Query: 250 LNSKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGR 309
+ + D N+ LH A +++L+K + + N I +
Sbjct: 212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA--LDIARKK 269
Query: 310 KHTHVAEYLLQQDSIN 325
H E LL+Q
Sbjct: 270 HHKECEE-LLEQAQAG 284
Score = 31.9 bits (72), Expect = 0.68
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 434 HKNNIEMVKLLLLHGADVNDTSNKPKQK-----PLAVAIQSGD---FQIVKELQNYGAQI 485
++ V +G D P + L +A++ + +V + G +
Sbjct: 160 CNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL 219
Query: 486 DKEN 489
D +
Sbjct: 220 DAKA 223
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 72.2 bits (177), Expect = 2e-13
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 60 LCSAVWDNKIREVEFLLSTGDHDVNEKL------QDGRTALYMAILQGLYK---MVTLLI 110
L +A+ + + V + G D + L L++A+ +V +I
Sbjct: 136 LWTAICNRDLLSVLEAFANGQ-DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII 194
Query: 111 HHGANVNDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAK 152
+G +++ + G T LH A + +K LL +A V
Sbjct: 195 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV 236
Score = 58.0 bits (140), Expect = 5e-09
Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 9/154 (5%)
Query: 490 YLKNKEAARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACVNVSSE 549
Y++++ A R L DLL + F + G E
Sbjct: 120 YVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQ-------PLPGPDAQAPEE 172
Query: 550 RRGSALIYVAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHSNDNIVRKLLHHGA 609
+ VA + +VD ++ NG ++ K+A G TALH A ++ + ++ LL A
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL-YNQPDCLKLLLKGRA 231
Query: 610 YYDMKDGKTGKTPLKHAEAGKNRDIIDLLHLIDN 643
+ + G+T L A +++ +LL
Sbjct: 232 LVGTVN-EAGETALDIARKKHHKECEELLEQAQA 264
Score = 49.1 bits (117), Expect = 3e-06
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 57 LTLLCSAVWDNKIREVEFLLSTGDHDVNEKLQDGRTALYMAILQGLYKMVTLLIHHGANV 116
L L + V+F++ G ++ K DG TAL+ A L + LL+ A V
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGG-HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 233
Query: 117 NDRDEKGYTPLHLACYLGNKNIVKFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNE 176
+E G T L +A +K + L +A A + + + N+S DS+ ++
Sbjct: 234 GTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVISTENLSSDSSLSSP 293
Score = 46.0 bits (109), Expect = 4e-05
Identities = 23/154 (14%), Positives = 47/154 (30%), Gaps = 43/154 (27%)
Query: 86 KLQDGRTALYMAILQGLYKMVTLLIHHGANVN------DRDEKGYTPLHLACYLGNKNIV 139
+ L+ AI V +G + D LHLA + N+ +
Sbjct: 128 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL 187
Query: 140 KFLLSKKADVRAKCSMMVTPILAVSANMSEDSTDTNEIISMLIENGANVREKMPFTDFSP 199
++ +I+NG ++ K + +
Sbjct: 188 ------------------------------------PLVDFIIQNGGHLDAKAADGN-TA 210
Query: 200 LHFAVVKKNLSVVELLIKCKADTNLIVKVNQEPL 233
LH+A + ++LL+K +A + + + L
Sbjct: 211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 244
Score = 44.5 bits (105), Expect = 1e-04
Identities = 21/168 (12%), Positives = 43/168 (25%), Gaps = 13/168 (7%)
Query: 382 LLFAAKHCDLQSAKYLIQKGANVNLTETQKAFISDARSSDFCFRSALQYACK--HKNNIE 439
L A + DL S G + + L A K ++ ++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPL-------PGPDAQAPEELVLHLAVKVANQASLP 188
Query: 440 MVKLLLLHGADVNDTSNKPKQKPLAVAIQSGDFQIVKELQNYGAQIDKENYLKN---KEA 496
+V ++ +G ++ + L A +K L A + N A
Sbjct: 189 LVDFIIQNGGHLDAKAAD-GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
Query: 497 ARIAHSTTELEERKKINDLLKLNLDFLKNVRSNKYDEVKKNIEDGACV 544
+ H E + L + + + +
Sbjct: 248 RKKHHKECEELLEQAQAGTFAFPLHVDYSWVISTENLSSDSSLSSPSA 295
Score = 34.5 bits (79), Expect = 0.11
Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)
Query: 200 LHFAVVKKNLSVVELLIKCKADTNLIVKVNQ-----EPLLFFAIE---SNSVKIVEAFLN 251
L A+ ++L V D + E +L A++ S+ +V+ F+
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVD-FII 194
Query: 252 SKNFDVSISDGDLNSLLHKACHVGNLQIVQMLVKRKFDINAQNRYFLPPMFFAIGMGRKH 311
+ D N+ LH A +++L+K + + N + I + H
Sbjct: 195 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL--DIARKKHH 252
Query: 312 THVAEYLLQQDSINVNLPIK 331
E L Q + P+
Sbjct: 253 KECEELLEQAQAGTFAFPLH 272
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.5
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 10/35 (28%)
Query: 136 KNIVKFL---LSKKADVRAKCSMMVTPILAVSANM 167
K +K L L AD A P LA+ A M
Sbjct: 19 KQALKKLQASLKLYADDSA-------PALAIKATM 46
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 30.0 bits (68), Expect = 2.6
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 355 KRLDQIIKRIID--RTENINAEGDDMITPLLFAAK 387
R ++ I+ +I+ R + + + F +
Sbjct: 188 PRAEEWIEVMIEDARAGLLKTTSGTALHEMAFHTQ 222
>3eoj_A Bacteriochlorophyll A protein; excitation energy transfer, beta
sheet, gamma-turns, chromophore, electron transport,
magnesium; HET: BCL; 1.30A {Prosthecochloris aestuarii
2K} PDB: 4bcl_A* 3oeg_A* 3vdi_A* 1m50_A* 3eni_A* 1ksa_A*
3bsd_A*
Length = 366
Score = 29.3 bits (65), Expect = 4.5
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 325 NVNLPIKRPNLLLDTVMSLKDPKVMSQTQIKRLDQIIKRIIDRTEN-INAEGD 376
VN+P P L D + + + +Q + R I+ ++D +N +N E D
Sbjct: 34 KVNVPAAIPLLPTDCNIRIDAKPLDAQKGVVRFTTKIESVVDSVKNTLNVEVD 86
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I,
microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Length = 262
Score = 28.2 bits (62), Expect = 8.1
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 625 HAEAGKNRDIIDLLHLIDNLFASVTNPYDPNV 656
HA A +N D L+ + N F +P +
Sbjct: 147 HAIAMRNNDAPALVEEVYNFFRDSRDPVHQAL 178
>2wkk_A Galectin-2; sugar-binding protein, secreted, cell WALL, sugar
binding, sugar binding protein, beta-galactoside binding
lectin, fruiting BODY; HET: GAL NAG FUC; 1.50A
{Coprinopsis cinerea} PDB: 1ulc_A* 1ul9_A* 1ule_A*
1ulf_A* 1ulg_A* 1uld_A*
Length = 150
Score = 27.5 bits (61), Expect = 9.9
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 577 VNFKSATGFTALHMACRFHSNDNIVR 602
NF SA LH++ R N IV
Sbjct: 39 FNFLSAGENILLHISIRPGEN-VIVF 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.381
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,615,609
Number of extensions: 649102
Number of successful extensions: 4580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2205
Number of HSP's successfully gapped: 741
Length of query: 710
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 610
Effective length of database: 3,909,693
Effective search space: 2384912730
Effective search space used: 2384912730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.0 bits)