BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15069
         (461 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
           AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
           With Amp And Mn Ion From Francisella Tularensis
 pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
           AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
           With Amp And Mn Ion From Francisella Tularensis
 pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
           AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
           Francisella Tularensis
 pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
           AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
           Francisella Tularensis
          Length = 352

 Score = 32.3 bits (72), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 97  PAIVSVTCYFERLRSLATGIAVCGSGLGTIIFAPIIDYTVREYGWK 142
           P I +   + +R + + + + V G  L T++  P+ DY  +E  W+
Sbjct: 48  PNIKNPFSFEQRKQMIESDLQVAGIDLDTVVIEPLADYFYQEQKWQ 93


>pdb|2DUM|A Chain A, Crystal Structure Of Hypothetical Protein, Ph0823
 pdb|2DUM|B Chain B, Crystal Structure Of Hypothetical Protein, Ph0823
 pdb|2DUM|C Chain C, Crystal Structure Of Hypothetical Protein, Ph0823
 pdb|2DUM|D Chain D, Crystal Structure Of Hypothetical Protein, Ph0823
          Length = 170

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 248 DTKQTLREMLDMELLR--DPIFILFTISNIFTSIGFNVPYVYIVKLAEQRGVT 298
           D K+ L+E    +L    + +   F   N+ T I F +P+  IVK+AE+  V+
Sbjct: 67  DIKEKLKEEASRKLQEKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVS 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,485,737
Number of Sequences: 62578
Number of extensions: 353810
Number of successful extensions: 1195
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 4
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)