Query psy15069
Match_columns 461
No_of_seqs 226 out of 1871
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 19:38:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 1.3E-39 4.3E-44 325.0 22.5 381 5-447 45-438 (451)
2 3o7q_A L-fucose-proton symport 100.0 2E-36 6.8E-41 300.8 20.0 351 6-436 44-426 (438)
3 2gfp_A EMRD, multidrug resista 100.0 5.8E-35 2E-39 284.4 10.0 342 6-430 18-364 (375)
4 4aps_A DI-OR tripeptide H+ sym 100.0 5.2E-33 1.8E-37 280.5 21.4 404 18-446 49-475 (491)
5 2cfq_A Lactose permease; trans 100.0 4.6E-31 1.6E-35 260.7 12.2 357 10-441 29-398 (417)
6 4gc0_A D-xylose-proton symport 100.0 4.8E-30 1.7E-34 258.7 14.3 392 8-449 32-470 (491)
7 2xut_A Proton/peptide symporte 100.0 1.5E-28 5E-33 250.0 17.7 407 11-443 36-503 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.7 4.1E-16 1.4E-20 156.7 12.2 175 265-442 13-196 (491)
9 1pw4_A Glycerol-3-phosphate tr 99.6 3.2E-16 1.1E-20 155.5 11.0 177 263-442 26-206 (451)
10 3o7q_A L-fucose-proton symport 99.6 9.1E-16 3.1E-20 151.7 13.8 174 266-441 27-228 (438)
11 2gfp_A EMRD, multidrug resista 99.6 3.3E-16 1.1E-20 151.7 6.7 167 268-437 3-169 (375)
12 2xut_A Proton/peptide symporte 99.6 4.8E-15 1.6E-19 150.2 12.1 174 264-440 11-196 (524)
13 2cfq_A Lactose permease; trans 99.2 1.3E-11 4.3E-16 121.3 8.3 142 22-164 258-401 (417)
14 4gc0_A D-xylose-proton symport 99.2 1.8E-11 6.1E-16 122.7 9.5 158 282-441 29-219 (491)
15 2g9p_A Antimicrobial peptide l 53.8 2.7 9.2E-05 21.2 -0.0 14 42-55 2-15 (26)
16 2knc_A Integrin alpha-IIB; tra 29.6 70 0.0024 20.4 3.7 10 427-436 19-28 (54)
17 2jo1_A Phospholemman; FXYD1, N 26.1 99 0.0034 20.7 4.0 16 427-442 22-37 (72)
18 3gia_A Uncharacterized protein 24.1 3.8E+02 0.013 25.0 9.9 6 47-52 34-39 (444)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.3e-39 Score=324.98 Aligned_cols=381 Identities=15% Similarity=0.136 Sum_probs=304.1
Q ss_pred eeeeeehHHHHhHhcCCCccHHHHHHHHHHhhhhhhHhhHhhhhhcCcceeeehhhHHHHHHHHHhhc----ccchhhHH
Q psy15069 5 YSFGILFIEFTKVFQEGDGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAILGSACLAVSVF----AKNVITLC 80 (461)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~g~~~~~~~~~l~~~----~~~~~~l~ 80 (461)
+.++.+.|.+.+++ .+..+.|++.+++.+++.+++++.|++.||+|||++++.+.++.+++.+++++ ++|++.++
T Consensus 45 ~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (451)
T 1pw4_A 45 KNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 123 (451)
T ss_dssp TSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHH
T ss_pred HHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Confidence 34567789999999 99999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHhhccccccccccchhHHHHHHhhhh-ccchhhhhhhccchhhhHHHHhHHHHHHHHhhc-hhHHHHHHHHHHHHHHHH
Q psy15069 81 ITIGFGTGLGFGLIYLPAIVSVTCYFE-RLRSLATGIAVCGSGLGTIIFAPIIDYTVREYG-WKITLLVLSVTVLSAVLF 158 (461)
Q Consensus 81 i~~~~l~G~g~~~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~g-w~~~f~i~~~~~l~~~i~ 158 (461)
+. |++.|++.+...++..+++.+++| ++|++++++...+.++|.+++|++++.+.+.+| ||++|++.++++++..++
T Consensus 124 ~~-~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~ 202 (451)
T 1pw4_A 124 VL-LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF 202 (451)
T ss_dssp HH-HHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 85 999999999999999999999995 889999999999999999999999999999899 999999999988877766
Q ss_pred HhhcccCCCCCCCCcccCCCCCcccccccccccccccccccccccCCCCCcCCCCCcccCCccccccccCCCCCCCCccc
Q psy15069 159 GILLRPLEEQPVEEPVEDGALPHLRIIIFEVKPKQRALTAVSTSIWQPSTAISTGPTEVISTQAQIDSKATVPESESTED 238 (461)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (461)
.++..|+++.+.+.+++++ .+++ . ++ +.+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~-~~~~----------------~---------------------~~---------~~~~~-- 233 (451)
T 1pw4_A 203 AFAMMRDTPQSCGLPPIEE-YKND----------------Y---------------------PD---------DYNEK-- 233 (451)
T ss_dssp HHHHCCCSSTTTCCCSCTT-TCCC--------------------------------------------------------
T ss_pred HHhhccCCHhhcCCCChhh-hccc----------------c---------------------cc---------cchhh--
Confidence 6555554332221000000 0000 0 00 00000
Q ss_pred ccccccCCchhhhhHhhhhccccccchhHHHHHHHHHHHhhccccchhhHhhHHHH-hCCCchhhHHHHHHHhhhhhhhh
Q psy15069 239 KTTCLNLSDDTKQTLREMLDMELLRDPIFILFTISNIFTSIGFNVPYVYIVKLAEQ-RGVTRSNASSLISIVGAANMVSR 317 (461)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~ 317 (461)
++.+...++....+.+|+|.++.+.+..++.....+.+..+.|.|+++ .|++..+.+++.+...++.++++
T Consensus 234 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 305 (451)
T 1pw4_A 234 --------AEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT 305 (451)
T ss_dssp -------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --------hhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 000011111112356889999999999999999989999999999965 89999999999999999999999
Q ss_pred hhhhhccCCC--CcchhHHHHHHHHHHH-HHHHHhhhh--hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCccchhHH
Q psy15069 318 VILGYISDRP--CVNRLYIYNGCLAICG-AATVICAFC--YNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNA 392 (461)
Q Consensus 318 ~~~g~l~dr~--~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (461)
++.|++.||+ ++++... .+..+.. ++++++.+. .+.+...+..++.|++.+...+....++.|.+|+++|+++
T Consensus 306 ~~~g~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 383 (451)
T 1pw4_A 306 LLCGWMSDKVFRGNRGATG--VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTA 383 (451)
T ss_dssp HHHHHHHHHTSTTCHHHHH--HHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHHHHHHHhcCCchhHH--HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhH
Confidence 9999999996 5443332 3333333 455555444 3566777778889998888888888999999999999999
Q ss_pred HHHHHHHHHh-hhhhccceeeeeecccCCchHHHHHHhHHHHHHHHHHHHHHHhhH
Q psy15069 393 FGLLLLFQGI-ASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVSGVMLFVIPSLQS 447 (461)
Q Consensus 393 ~g~~~~~~~~-g~~~gp~i~g~l~~~~g~~~~~f~~~~~~~l~~~~~~~~~~~~~~ 447 (461)
+|+.+....+ |..++|.+.|.+.|..| |+..|++.+++.+++.++.+..++.++
T Consensus 384 ~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (451)
T 1pw4_A 384 AGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVMIGEK 438 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999 99999999999999875 999999999988888877766554433
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2e-36 Score=300.79 Aligned_cols=351 Identities=15% Similarity=0.122 Sum_probs=284.6
Q ss_pred eeeeehHHHHhHhcCCCccHHHHHHHHHHhhhhhhHhhHhhhhhcCcceeeehhhHHHHHHHHHh---hcccchhhHHHH
Q psy15069 6 SFGILFIEFTKVFQEGDGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAILGSACLAVS---VFAKNVITLCIT 82 (461)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~g~~~~~~~~~l~---~~~~~~~~l~i~ 82 (461)
.++.+.|.+++++|.+..+.|++.+++.+++.+++++.|++.||+|||++++.+.++.+++.+++ +++++++.+++.
T Consensus 44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (438)
T 3o7q_A 44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVG 123 (438)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999 899999999985
Q ss_pred hhccccccccccchhHHHHHHhhhh-ccchhhhhhhccchhhhHHHHhHHHHHHH-Hhhc--------------------
Q psy15069 83 IGFGTGLGFGLIYLPAIVSVTCYFE-RLRSLATGIAVCGSGLGTIIFAPIIDYTV-REYG-------------------- 140 (461)
Q Consensus 83 ~~~l~G~g~~~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~-~~~g-------------------- 140 (461)
|++.|++.+...++..+++.+++| |+|++++++.+++.++|.+++|++++.+. +..+
T Consensus 124 -~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (438)
T 3o7q_A 124 -LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKH 202 (438)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHH
T ss_pred -HHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhh
Confidence 899999999999999999999995 88999999999999999999999999998 4444
Q ss_pred -----hhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCcccCCCCCcccccccccccccccccccccccCCCCCcCCCCCc
Q psy15069 141 -----WKITLLVLSVTVLSAVLFGILLRPLEEQPVEEPVEDGALPHLRIIIFEVKPKQRALTAVSTSIWQPSTAISTGPT 215 (461)
Q Consensus 141 -----w~~~f~i~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (461)
||++|++.+++.++..++.++.+ .++.+++++++
T Consensus 203 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~---------------------------------------- 241 (438)
T 3o7q_A 203 SLVLSVQTPYMIIVAIVLLVALLIMLTK-FPALQSDNHSD---------------------------------------- 241 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCTTTCCCC----------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHc-CCccccccccc----------------------------------------
Confidence 99999988887776665544432 22211100000
Q ss_pred ccCCccccccccCCCCCCCCcccccccccCCchhhhhHhhhhccccccchhHHHHHHHHHHHhhccccchhhHhhH-HHH
Q psy15069 216 EVISTQAQIDSKATVPESESTEDKTTCLNLSDDTKQTLREMLDMELLRDPIFILFTISNIFTSIGFNVPYVYIVKL-AEQ 294 (461)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 294 (461)
++ .++.+...+ +++|+|.++...+..++.......+..++|.| +++
T Consensus 242 -------------------~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (438)
T 3o7q_A 242 -------------------AK---------QGSFSASLS-----RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEE 288 (438)
T ss_dssp -------------------SS---------TTSHHHHHH-----HHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------cc---------ccchhhhHH-----HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00 001112222 46789999999998888888888889999999 766
Q ss_pred h-CCCchhhHHHHHHHhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhHH
Q psy15069 295 R-GVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGAATVICAFCYNYVELAIYAGVFGAMIGAYV 373 (461)
Q Consensus 295 ~-g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 373 (461)
. |++..+.+...+...++.++++++.|++.||+++++ ++..+.++..+..++..+.++.+. .+..++.|++.+...
T Consensus 289 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~ 365 (438)
T 3o7q_A 289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--VLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQY 365 (438)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHH
Confidence 5 999999999999999999999999999999975444 344555555666666666666554 344578888988889
Q ss_pred HHHHHHHHHhcCccchhHHHHHHHHHHHhhhhhccceeeeeecccCCchHHHHHHhHHHHHHH
Q psy15069 374 GLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVSG 436 (461)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~gp~i~g~l~~~~g~~~~~f~~~~~~~l~~~ 436 (461)
+....+..|.+|++ ++++.++.. ...+|+.++|.+.|++.|..|+|+..|++.+++.++..
T Consensus 366 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 366 PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 99999989999855 888888877 67799999999999999998779988887665544443
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=5.8e-35 Score=284.38 Aligned_cols=342 Identities=15% Similarity=0.060 Sum_probs=277.0
Q ss_pred eeeeehHHHHhHhcCCCccHHHHHHHHHHhhhhhhHhhHhhhhhcCcceeeehhhHHHHHHHHHhhcccchhhHHHHhhc
Q psy15069 6 SFGILFIEFTKVFQEGDGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAILGSACLAVSVFAKNVITLCITIGF 85 (461)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~g~~~~~~~~~l~~~~~~~~~l~i~~~~ 85 (461)
.++...|.+.+++|.+..+.+++.+++.++..+++++.|++.||+|||+++..+.++.+++.++.+++++++.+++. |+
T Consensus 18 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 96 (375)
T 2gfp_A 18 IYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAA-SA 96 (375)
T ss_dssp HHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHH-HH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999985 89
Q ss_pred cccccccccchhHHHHHHhhhh-ccchhhhhhhccchhhhHHHHhHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhccc
Q psy15069 86 GTGLGFGLIYLPAIVSVTCYFE-RLRSLATGIAVCGSGLGTIIFAPIIDYTVREYGWKITLLVLSVTVLSAVLFGILLRP 164 (461)
Q Consensus 86 l~G~g~~~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~gw~~~f~i~~~~~l~~~i~~~~~~~ 164 (461)
+.|++.+...+...+++.+++| |+|++++++...+.++|..++|++++.+.+.+|||+.|++.+++.++..+...+..|
T Consensus 97 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (375)
T 2gfp_A 97 MQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMP 176 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSC
T ss_pred HHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 9999999999999999999995 889999999999999999999999999999899999999998887776654444444
Q ss_pred CCCCCCCCcccCCCCCcccccccccccccccccccccccCCCCCcCCCCCcccCCccccccccCCCCCCCCccccccccc
Q psy15069 165 LEEQPVEEPVEDGALPHLRIIIFEVKPKQRALTAVSTSIWQPSTAISTGPTEVISTQAQIDSKATVPESESTEDKTTCLN 244 (461)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (461)
+++.++ +++ ++
T Consensus 177 ~~~~~~--~~~----------------------------------------------------------~~--------- 187 (375)
T 2gfp_A 177 ETRPVD--APR----------------------------------------------------------TR--------- 187 (375)
T ss_dssp CCSTTT--CCC----------------------------------------------------------CC---------
T ss_pred ccCCCC--ccc----------------------------------------------------------cc---------
Confidence 322111 000 00
Q ss_pred CCchhhhhHhhhhccccccchhHHHHHHHHHHHhhccccchhhHhhHHHH-hCCCchhhHHHHHHHhhhhhhhhhhhhhc
Q psy15069 245 LSDDTKQTLREMLDMELLRDPIFILFTISNIFTSIGFNVPYVYIVKLAEQ-RGVTRSNASSLISIVGAANMVSRVILGYI 323 (461)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~g~l 323 (461)
.++.. ++.+|+|.++...+..++.......+..+.|.++++ .|.++.+.+.+.+...++.++++++.+++
T Consensus 188 ----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l 258 (375)
T 2gfp_A 188 ----LLTSY-----KTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRP 258 (375)
T ss_dssp ----TTTCS-----THHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred ----HHHHH-----HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011 135678889888888888888888889999999855 89999999999999999999999999999
Q ss_pred cCCCCcchhHHHHHHH-HHHHHHHHHhhh--hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCccchhHHHHHHHHHH
Q psy15069 324 SDRPCVNRLYIYNGCL-AICGAATVICAF--CYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQ 400 (461)
Q Consensus 324 ~dr~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 400 (461)
.||.+ ++....... ...++..+.... .++.+..++..++.|++.+...+....++.|.+| ++|+++.|+.+...
T Consensus 259 ~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~ 335 (375)
T 2gfp_A 259 NKRFS--TLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQ 335 (375)
T ss_dssp TTHHH--HHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHH
Confidence 99943 332222211 112222112222 2356666677888999999989999999999998 89999999999999
Q ss_pred HhhhhhccceeeeeecccCCchHHHHHHhH
Q psy15069 401 GIASLVGPPIAGFLYDSTLSYSPAFFLAGG 430 (461)
Q Consensus 401 ~~g~~~gp~i~g~l~~~~g~~~~~f~~~~~ 430 (461)
++|..++|.+.|.+.+.. +|...+.+.+.
T Consensus 336 ~~g~~~~~~~~g~l~~~~-~~~~~~~~~~~ 364 (375)
T 2gfp_A 336 NIGSGVLASLSAMLPQTG-QGSLGLLMTLM 364 (375)
T ss_dssp HHHHHCCSTTCTHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-cccHHHHHHHH
Confidence 999999999999998864 47777766443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=5.2e-33 Score=280.48 Aligned_cols=404 Identities=13% Similarity=0.067 Sum_probs=271.2
Q ss_pred hcCCCccHHHHHHHHHHhhhhhhHhhHhhhhh-cCcceeeehhhHHHHHHHHHhhcccchhhHHHHhhccccccccccch
Q psy15069 18 FQEGDGVTSWIASILVGVTLCSGPISSAFVNK-YGCRNVTICGAILGSACLAVSVFAKNVITLCITIGFGTGLGFGLIYL 96 (461)
Q Consensus 18 ~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~g~~~~~~~~~l~~~~~~~~~l~i~~~~l~G~g~~~~~~ 96 (461)
+|.+..+.+++.+++.+++.+++++.|++.|| +|||+++..+.++.+++.+++++++|++.+++. |++.|+|.+...+
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~~~~~~~~ 127 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGS-IILIIIGTGFLKP 127 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHH-HHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHhccc
Confidence 99999999999999999999999999999999 899999999999999999999999999999985 8999999999999
Q ss_pred hHHHHHHhhhh-cc--chhhhhhhccchhhhHHHHhHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCc
Q psy15069 97 PAIVSVTCYFE-RL--RSLATGIAVCGSGLGTIIFAPIIDYTVREYGWKITLLVLSVTVLSAVLFGILLRPLEEQPVEEP 173 (461)
Q Consensus 97 ~~~~~~~~~f~-~~--rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~gw~~~f~i~~~~~l~~~i~~~~~~~~~~~~~~~~ 173 (461)
...+++.+++| ++ |+.++++.+.+.++|..++|++++.+.+.+|||++|++.++..++..++.++..++...++++.
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR 207 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence 99999999995 66 7778888999999999999999999999999999999988877766655554433321111000
Q ss_pred ccCCCCCccccccccccccccc-ccccccccCCCCCcCCCCCcccCCccccccccCCCCCCCCccccc--ccccCCch-h
Q psy15069 174 VEDGALPHLRIIIFEVKPKQRA-LTAVSTSIWQPSTAISTGPTEVISTQAQIDSKATVPESESTEDKT--TCLNLSDD-T 249 (461)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~ 249 (461)
.+ + +++ +++.++ ........ -.. .+.-- -....+... .++..... ........ .
T Consensus 208 ~~-~--~~~-------~~~~~~~~~~~g~~l---------~~~-~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 265 (491)
T 4aps_A 208 PT-D--PLA-------PEEVKPLLVKVSLAV---------AGF-IAIIV-VMNLVGWNS-LPAYINLLTIVAIAIPVFYF 265 (491)
T ss_dssp CS-C--CCS-------HHHHHHHHHHCCCCC---------HHH-HHHHH-HHHHHSSCC-TTHHHHHHHHHHHHHHHHHH
T ss_pred CC-C--ccc-------cchhHHHHHHHHHHH---------HHH-HHHHH-HHHhccCcc-cccchhhhhHHHHHHHHHHH
Confidence 00 0 000 000000 00000000 000 00000 000000000 00000000 00000000 0
Q ss_pred hhhHhh--hhccccccchhHHHHHHHHHHHhhccccchhhHhhHHHH-hCCCchhhHHHHHHHhhhhhhhhhhhhhccCC
Q psy15069 250 KQTLRE--MLDMELLRDPIFILFTISNIFTSIGFNVPYVYIVKLAEQ-RGVTRSNASSLISIVGAANMVSRVILGYISDR 326 (461)
Q Consensus 250 ~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr 326 (461)
....++ .......+....+.+.+..++....+.....++|.+.++ .+.+..+.+...+...+..+++.++.|++.||
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 345 (491)
T 4aps_A 266 AWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA 345 (491)
T ss_dssp HHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH
Confidence 000000 000011122234455555566666667777888888844 67776788888889999999999999999999
Q ss_pred CCcchhH---HHHHHHHHHHHHHHHhhhhh---------hHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCccchhHHHH
Q psy15069 327 PCVNRLY---IYNGCLAICGAATVICAFCY---------NYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFG 394 (461)
Q Consensus 327 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g 394 (461)
+++|+.. .+..++.+.++++++..... +.+...+..++.|++.+...+....++.|.+|+++|+++.|
T Consensus 346 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g 425 (491)
T 4aps_A 346 WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMS 425 (491)
T ss_dssp TTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTH
T ss_pred HhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHH
Confidence 8765422 22244555555554444422 66677778889999998888889999999999999999999
Q ss_pred HHHHHHHhhhhhccceeeeeecccCCchHHHHHHhHHHHHHHHHHHHHHHhh
Q psy15069 395 LLLLFQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVSGVMLFVIPSLQ 446 (461)
Q Consensus 395 ~~~~~~~~g~~~gp~i~g~l~~~~g~~~~~f~~~~~~~l~~~~~~~~~~~~~ 446 (461)
+.+....+|..++|.+.+.+.|. ++...|...+++.+++.+..+...+..
T Consensus 426 ~~~~~~~~g~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 426 MWFLSSSVGSALNAQLVTLYNAK--SEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGGS--STTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875 477788888888777776665544433
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=4.6e-31 Score=260.75 Aligned_cols=357 Identities=13% Similarity=0.103 Sum_probs=243.9
Q ss_pred ehHH-HHhHhcCCCccHHHHHHHHHHhhhhhhHhhHhhhhhcCcceeeehhhHHHHHHH---HHhhcccch-hhHHHHhh
Q psy15069 10 LFIE-FTKVFQEGDGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAILGSACL---AVSVFAKNV-ITLCITIG 84 (461)
Q Consensus 10 ~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~g~~~~~~~~---~l~~~~~~~-~~l~i~~~ 84 (461)
++|. +++++|.+..+.|++.+++.+++.+++++.|++.||+|||++++.+.++.+++. ....+.+.. ..++. .+
T Consensus 29 ~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 107 (417)
T 2cfq_A 29 FFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV-GS 107 (417)
T ss_dssp THHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCH-HH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 4555 456699999999999999999999999999999999999999998888776532 222232221 11222 24
Q ss_pred ccccccccccchhHHHHHHhhhh---ccchhhhhhhccchhhhHHHHhHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhh
Q psy15069 85 FGTGLGFGLIYLPAIVSVTCYFE---RLRSLATGIAVCGSGLGTIIFAPIIDYTVREYGWKITLLVLSVTVLSAVLFGIL 161 (461)
Q Consensus 85 ~l~G~g~~~~~~~~~~~~~~~f~---~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~~gw~~~f~i~~~~~l~~~i~~~~ 161 (461)
++.|++.+..+++....+.++.+ ++++.++|....+.++|..++|++++.+.+ .+||+.|++.++..++..+.. +
T Consensus 108 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~-~ 185 (417)
T 2cfq_A 108 IVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLL-F 185 (417)
T ss_dssp HGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHS-C
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHH-H
Confidence 45555555544444445555553 567888899999999999999999999887 699999987766644333332 2
Q ss_pred cccCCCCCCCCcccCCCCCcccccccccccccccccccccccCCCCCcCCCCCcccCCccccccccCCCCCCCCcccccc
Q psy15069 162 LRPLEEQPVEEPVEDGALPHLRIIIFEVKPKQRALTAVSTSIWQPSTAISTGPTEVISTQAQIDSKATVPESESTEDKTT 241 (461)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (461)
+++++ .+++++++ ++ ++++++
T Consensus 186 ~~~~~-~~~~~~~~-----~~--------------------------------------------------~~~~~~--- 206 (417)
T 2cfq_A 186 FAKTD-APSSATVA-----NA--------------------------------------------------VGANHS--- 206 (417)
T ss_dssp SSCCC-CSCSSCSS-----SS--------------------------------------------------SSSCCC---
T ss_pred HcCcc-cccccccc-----cc--------------------------------------------------cccccc---
Confidence 22221 11100000 00 000000
Q ss_pred cccCCchhhhhHhhhhccccccchhHHHHHHHHHHHhhccccchhhHhhHHHH-hC---CCchhhHHHHHHHhhhhhhhh
Q psy15069 242 CLNLSDDTKQTLREMLDMELLRDPIFILFTISNIFTSIGFNVPYVYIVKLAEQ-RG---VTRSNASSLISIVGAANMVSR 317 (461)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g---~s~~~~~~~~~~~~~~~~~g~ 317 (461)
+.+. ... .+++|+|.++...+..+.....++.+..++|.|+++ ++ .+....+...++..++.+++.
T Consensus 207 ----~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 276 (417)
T 2cfq_A 207 ----AFSL-KLA-----LELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM 276 (417)
T ss_dssp ----CCCH-HHH-----HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred ----cccH-HHH-----HHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHH
Confidence 0000 111 135788888877666555555555555678888744 33 224456777788888899999
Q ss_pred hhhhhccCCCCcchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCccchhHHHHH-H
Q psy15069 318 VILGYISDRPCVNRLYIYNGCLAICGAATVICAFCYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGL-L 396 (461)
Q Consensus 318 ~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ 396 (461)
++.|+++||+++|+.. ..+..+.++..+...+.++.+.+++..++.+++.+...+....++.|.+|++.|++++++ .
T Consensus 277 ~~~g~l~dr~g~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 354 (417)
T 2cfq_A 277 FFAPLIINRIGGKNAL--LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCF 354 (417)
T ss_dssp HHHHHHHHHHCHHHHH--HHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHH--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 9999999997654433 345555555555556666776777677777877776677778899999999999999999 4
Q ss_pred HHHHHhhhhhccceeeeeecccCCchHHHHHHhHHHHHHHHHHHH
Q psy15069 397 LLFQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVSGVMLFV 441 (461)
Q Consensus 397 ~~~~~~g~~~gp~i~g~l~~~~g~~~~~f~~~~~~~l~~~~~~~~ 441 (461)
+....+|++++|.++|++.|..| |...|.+.+++.+++.+..+.
T Consensus 355 ~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 355 CFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp TTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHh
Confidence 88888999999999999999765 888998888887777765543
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=4.8e-30 Score=258.68 Aligned_cols=392 Identities=13% Similarity=0.120 Sum_probs=255.5
Q ss_pred eeehHHHHhHhcC--------CCccHHHHHHHHHHhhhhhhHhhHhhhhhcCcceeeehhhHHHHHHHHHhhc-------
Q psy15069 8 GILFIEFTKVFQE--------GDGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAILGSACLAVSVF------- 72 (461)
Q Consensus 8 ~~~~~~~~~~~~~--------~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~g~~~~~~~~~l~~~------- 72 (461)
+...|.+.++++. +..+.|++.+++.+++.+++++.|++.||+|||+++.++.+++.++.+++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~ 111 (491)
T 4gc0_A 32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTS 111 (491)
T ss_dssp GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSC
T ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4467888887743 3456889999999999999999999999999999999999999999999884
Q ss_pred -----------ccchhhHHHHhhccccccccccchhHHHHHHhhhh-ccchhhhhhhccchhhhHHHHhHHHHHHHHh--
Q psy15069 73 -----------AKNVITLCITIGFGTGLGFGLIYLPAIVSVTCYFE-RLRSLATGIAVCGSGLGTIIFAPIIDYTVRE-- 138 (461)
Q Consensus 73 -----------~~~~~~l~i~~~~l~G~g~~~~~~~~~~~~~~~f~-~~rg~a~gi~~~~~~lg~~i~~~l~~~l~~~-- 138 (461)
++|++++++. |+++|+|.|...+....++.|+.| ++|++..++.+.+..+|.++++.++..+...
T Consensus 112 ~~~~~~~~~~~a~~~~~l~~~-R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 190 (491)
T 4gc0_A 112 INPDNTVPVYLAGYVPEFVIY-RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGD 190 (491)
T ss_dssp SSSSSSCCGGGGGCHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hcchhHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccc
Confidence 7899999985 999999999999999999999995 8899999999999999998888887776543
Q ss_pred ------hchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCcccCCCCCcccccccccccccccccccccccCCCCCcCCC
Q psy15069 139 ------YGWKITLLVLSVTVLSAVLFGILLRPLEEQPVEEPVEDGALPHLRIIIFEVKPKQRALTAVSTSIWQPSTAIST 212 (461)
Q Consensus 139 ------~gw~~~f~i~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (461)
.+||+.+.+..+..++..+... . .+|+|++...+ +.++|.++..+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~peSp~~L~~~------------~~~~~a~~~l~~------------- 242 (491)
T 4gc0_A 191 ASWLNTDGWRYMFASECIPALLFLMLLY-T--VPESPRWLMSR------------GKQEQAEGILRK------------- 242 (491)
T ss_dssp TTTTTTTHHHHHHHTTHHHHHHHHHHGG-G--SCCCHHHHHHT------------TCHHHHHHHHHH-------------
T ss_pred cccccchhhHHHhhhhhhhhhhhhhhhh-c--CCCChHHHHHc------------CchhHHHHhHHH-------------
Confidence 3577777666555554433322 2 23344321110 000000000000
Q ss_pred CCcccCCccccccccCCCCCCCCcccccccccCCchhhhhHhhhhccccccchhHHH-HHHHHHHHhhccccchhhHhhH
Q psy15069 213 GPTEVISTQAQIDSKATVPESESTEDKTTCLNLSDDTKQTLREMLDMELLRDPIFIL-FTISNIFTSIGFNVPYVYIVKL 291 (461)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 291 (461)
. ..+ +...++..+. .+..+...+........+.+.... .....+....+.+.+..+.|.+
T Consensus 243 -----~--~~~------~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (491)
T 4gc0_A 243 -----I--MGN------TLATQAVQEI------KHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEV 303 (491)
T ss_dssp -----H--HHH------HHHHHHHHHH------HHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----h--cCC------chhHHHHHHH------HHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHH
Confidence 0 000 0000000000 000000000000111233333333 4444455556666777788888
Q ss_pred HHHhCCCchhhHHHHHHHhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHhh--h-hh-hHHHHHHHHHHHhh
Q psy15069 292 AEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGAATVICA--F-CY-NYVELAIYAGVFGA 367 (461)
Q Consensus 292 ~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~-~~-~~~~~~~~~~l~g~ 367 (461)
.+..+.+...........++..+++.++.+++.||+|+|+..+. +....+++++.+. . .. ..+...+..+++..
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 381 (491)
T 4gc0_A 304 FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII--GALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVA 381 (491)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH--HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc--chHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 88889888888888888889999999999999999876665543 3333333332222 1 11 22222222222222
Q ss_pred h-hhhHHHHHHHHHHHhcCccchhHHHHHHHHHHHhhhhhccceeeeeeccc-----CCchHHHHHHhHHHHHHHHHH-H
Q psy15069 368 M-IGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPIAGFLYDST-----LSYSPAFFLAGGAIFVSGVML-F 440 (461)
Q Consensus 368 ~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~gp~i~g~l~~~~-----g~~~~~f~~~~~~~l~~~~~~-~ 440 (461)
+ .....+..+.+..|++|++.|+++.|+.+....+++++++.+...+.+.. ..+...|++.+++++++.+.. +
T Consensus 382 ~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~ 461 (491)
T 4gc0_A 382 AFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 461 (491)
T ss_dssp HHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 2 22345677788999999999999999999999999999998877765431 125567778888877777665 4
Q ss_pred HHHHhhHhH
Q psy15069 441 VIPSLQSYL 449 (461)
Q Consensus 441 ~~~~~~~~~ 449 (461)
++|+.+.+.
T Consensus 462 ~~PETkg~t 470 (491)
T 4gc0_A 462 FVPETKGKT 470 (491)
T ss_dssp HCCCCTTCC
T ss_pred eecCCCCCC
Confidence 556555443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=1.5e-28 Score=250.02 Aligned_cols=407 Identities=10% Similarity=-0.011 Sum_probs=246.2
Q ss_pred hHHHHhHhc------CCCccHHHHHHHHHHhhhhhhHhhHhhhhhc-CcceeeehhhHHHHHHHHHhhccc-chhhHHHH
Q psy15069 11 FIEFTKVFQ------EGDGVTSWIASILVGVTLCSGPISSAFVNKY-GCRNVTICGAILGSACLAVSVFAK-NVITLCIT 82 (461)
Q Consensus 11 ~~~~~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~g~~~~~~~~~l~~~~~-~~~~l~i~ 82 (461)
.+.+.+++| .+..+.+++.+++.+++.+++++.|++.||+ |||+++..+.++.+++.+++++++ +++.+++.
T Consensus 36 ~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (524)
T 2xut_A 36 TPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTG 115 (524)
T ss_dssp HHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 345667799 9999999999999999999999999999999 999999999999999999999998 99998875
Q ss_pred hhccccccccccchhHHHHHHhhhh-ccchhhhhh---hccchhhhHHHHhHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy15069 83 IGFGTGLGFGLIYLPAIVSVTCYFE-RLRSLATGI---AVCGSGLGTIIFAPIIDYTVREYGWKITLLVLSVTVLSAVLF 158 (461)
Q Consensus 83 ~~~l~G~g~~~~~~~~~~~~~~~f~-~~rg~a~gi---~~~~~~lg~~i~~~l~~~l~~~~gw~~~f~i~~~~~l~~~i~ 158 (461)
|++.|++.+...+...+++.+++| ++|+++.++ ...+.++|.+++|++++.+.+.+|||+.|++.+++.++..++
T Consensus 116 -~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 116 -LFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp -HHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999995 778776666 899999999999999999999899999999998887766555
Q ss_pred HhhcccCCCCCCCCcccCCCCCcccccccccccccccccccccccCCCCCcCCCCCcccCCccccc-----cccC-CCCC
Q psy15069 159 GILLRPLEEQPVEEPVEDGALPHLRIIIFEVKPKQRALTAVSTSIWQPSTAISTGPTEVISTQAQI-----DSKA-TVPE 232 (461)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~ 232 (461)
.++.++..+.+++++++. .+. .+......+. .+..++.... +... ....
T Consensus 195 ~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 249 (524)
T 2xut_A 195 FWLGRKRYIHMPPEPKDP--HGF--------LPVIRSALLT---------------KVEGKGNIGLVLALIGGVSAAYAL 249 (524)
T ss_dssp HHSSSSSCCCCC---------------------------------------------CTTHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHhcccccccCCCCccc--hhH--------HHHHHHHHhh---------------hhcccCccchhhhhhhhhhhhhhh
Confidence 444333221111000000 000 0000000000 0000000000 0000 0000
Q ss_pred CCCccccc---cc----ccCCchhhhhH---h---hhhccccccc-hhHHH---HHHHHHHHhhccccchhhHhhHHHHh
Q psy15069 233 SESTEDKT---TC----LNLSDDTKQTL---R---EMLDMELLRD-PIFIL---FTISNIFTSIGFNVPYVYIVKLAEQR 295 (461)
Q Consensus 233 ~~~~~~~~---~~----~~~~~~~~~~~---~---~~~~~~~l~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (461)
...+.... .+ ...++..+.++ . +.......++ +..+. ..+...+....+......++.+..+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (524)
T 2xut_A 250 VNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM 329 (524)
T ss_dssp GGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHS
T ss_pred cccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhc
Confidence 00000000 00 00000000000 0 0000001112 22211 11111122222222333444444444
Q ss_pred CCCc-hhhHHHHHHHhhhhhhhhhhhhhcc----CCCCcc--hhHHHHHHHHHHHHHHHHhhhh---------hhHHHHH
Q psy15069 296 GVTR-SNASSLISIVGAANMVSRVILGYIS----DRPCVN--RLYIYNGCLAICGAATVICAFC---------YNYVELA 359 (461)
Q Consensus 296 g~s~-~~~~~~~~~~~~~~~~g~~~~g~l~----dr~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 359 (461)
+.+. ...+.+.....++.+++.++.+++. ||.+++ +...+..++++.+++++++.+. .+.+.++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (524)
T 2xut_A 330 VKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQI 409 (524)
T ss_dssp CCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHH
T ss_pred CCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHH
Confidence 3322 2455666666666777777777764 443221 1223345556666666555543 2566777
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCccchhHHHHHHHHHHHhhhhhccceeeeeecccC-Cc---------hHHHHHHh
Q psy15069 360 IYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPIAGFLYDSTL-SY---------SPAFFLAG 429 (461)
Q Consensus 360 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~gp~i~g~l~~~~g-~~---------~~~f~~~~ 429 (461)
+..++.|++.+...+....++.|.+|+++|++++|+.++...+|+.+||.+.|.+.|..+ +| ...|++.+
T Consensus 410 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (524)
T 2xut_A 410 LPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFA 489 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHH
Confidence 788899999999999999999999999999999999999999999999999999987431 12 23366667
Q ss_pred HHHHHHHHHHHHHH
Q psy15069 430 GAIFVSGVMLFVIP 443 (461)
Q Consensus 430 ~~~l~~~~~~~~~~ 443 (461)
++.+++.+..+...
T Consensus 490 ~~~~~~~~~~~~~~ 503 (524)
T 2xut_A 490 GFAILAAIVFALYA 503 (524)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHH
Confidence 76666665554443
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.65 E-value=4.1e-16 Score=156.75 Aligned_cols=175 Identities=14% Similarity=0.148 Sum_probs=151.4
Q ss_pred hhHHHHHHHHHHHhhccccchhhHhhHH-HH-----hCCCchhhHHHHHHHhhhhhhhhhhhhhccCC-CCcchhHHHHH
Q psy15069 265 PIFILFTISNIFTSIGFNVPYVYIVKLA-EQ-----RGVTRSNASSLISIVGAANMVSRVILGYISDR-PCVNRLYIYNG 337 (461)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~ 337 (461)
+.++.+.+..++..++++....+++.|+ ++ +|++..+.+++.+...++..+++++.|+++|| +|+|+... .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~--~ 90 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF--W 90 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH--H
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH--H
Confidence 3567778888888888888989999998 45 89999999999999999999999999999999 77665544 5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCccc--hhHHHHHHHHHHHhhhhhccceeeeee
Q psy15069 338 CLAICGAATVICAFCYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDR--LTNAFGLLLLFQGIASLVGPPIAGFLY 415 (461)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~gp~i~g~l~ 415 (461)
+.++.+++.++..+.++.+.+++..++.|++.+...+...+++.|.+|+++ |+.+.++.+...++|..++|.++|.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 170 (491)
T 4aps_A 91 GGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ 170 (491)
T ss_dssp HHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777788899999999999999999999999999999999988 788888899999999999999999999
Q ss_pred cccCCchHHHHHHhHHHHHHHHHHHHH
Q psy15069 416 DSTLSYSPAFFLAGGAIFVSGVMLFVI 442 (461)
Q Consensus 416 ~~~g~~~~~f~~~~~~~l~~~~~~~~~ 442 (461)
+..| |+..|++.++..+++.+..+..
T Consensus 171 ~~~g-~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 171 EAAG-YHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHSC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhh-HHHHHHHHHHHHHHHHHHHHHh
Confidence 9864 9999999888777776665544
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.65 E-value=3.2e-16 Score=155.54 Aligned_cols=177 Identities=14% Similarity=0.096 Sum_probs=153.1
Q ss_pred cchhHHHHHHHHHHHhhccccchhhHhhHHHHhCCCchhhHHHHHHHhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHH
Q psy15069 263 RDPIFILFTISNIFTSIGFNVPYVYIVKLAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAIC 342 (461)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~ 342 (461)
+.+.++...+..++.....+.+...+|.+.+++ .+..+.+++.+...++..++.++.|+++||+|+|+ ++..+.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~--~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV--FLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH--HHHHHHHHH
Confidence 345567777788888888888889999999888 99999999999999999999999999999976554 444666777
Q ss_pred HHHHHHhhh----hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCccchhHHHHHHHHHHHhhhhhccceeeeeeccc
Q psy15069 343 GAATVICAF----CYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPIAGFLYDST 418 (461)
Q Consensus 343 ~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~gp~i~g~l~~~~ 418 (461)
+++.++..+ .++++.+++..++.|++.+...+...+++.|.+|+++|+++.|+.+....+|..+||.+++.+.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777 8889999999999999999999999999999999999999999999999999999999999988876
Q ss_pred CCchHHHHHHhHHHHHHHHHHHHH
Q psy15069 419 LSYSPAFFLAGGAIFVSGVMLFVI 442 (461)
Q Consensus 419 g~~~~~f~~~~~~~l~~~~~~~~~ 442 (461)
|+|+..|++.+++.++..++.+..
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhh
Confidence 559999999988877766554433
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.65 E-value=9.1e-16 Score=151.70 Aligned_cols=174 Identities=10% Similarity=0.089 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHhhccccchhhHhhHHHHhCCCchhhHHHHHHHhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHHHH
Q psy15069 266 IFILFTISNIFTSIGFNVPYVYIVKLAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGAA 345 (461)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 345 (461)
.++.+.+..++..+........+|.+.+++|.+..+.+++.+...++..++.++.|+++||+|+|+. +..+.++.+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~--l~~~~~~~~~~ 104 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG--IITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH--HHHHHHHHHHH
Confidence 3445566666667777778888999889999999999999999999999999999999999765554 44556666666
Q ss_pred HHHh---hhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCccchhHHHHHHHHHHHhhhhhccceeeeee-cccCC-
Q psy15069 346 TVIC---AFCYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPIAGFLY-DSTLS- 420 (461)
Q Consensus 346 ~~~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~gp~i~g~l~-~~~g~- 420 (461)
.++. .+.++++.+++.+++.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+++.+. +..+.
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~ 184 (438)
T 3o7q_A 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQ 184 (438)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCC
T ss_pred HHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 6666 677899999999999999999999999999999999999999999999999999999999999998 65555
Q ss_pred -----------------------chHHHHHHhHHHHHHHHHHHH
Q psy15069 421 -----------------------YSPAFFLAGGAIFVSGVMLFV 441 (461)
Q Consensus 421 -----------------------~~~~f~~~~~~~l~~~~~~~~ 441 (461)
|++.|++.+++.++..+..+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 185 SQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp CHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899998877776666655444
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.61 E-value=3.3e-16 Score=151.69 Aligned_cols=167 Identities=17% Similarity=0.129 Sum_probs=145.9
Q ss_pred HHHHHHHHHHhhccccchhhHhhHHHHhCCCchhhHHHHHHHhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHHHHHH
Q psy15069 268 ILFTISNIFTSIGFNVPYVYIVKLAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGAATV 347 (461)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 347 (461)
+.+.+..++.......+...+|.+.+++|.+..+.+++.+...++..+++++.|+++||+|+|+..+ .+..+.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~--~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVIL--VGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH--HHHHHHHHHHH
Confidence 3456666777777778888899988999999999999999999999999999999999988776655 45556666667
Q ss_pred HhhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCccchhHHHHHHHHHHHhhhhhccceeeeeecccCCchHHHHH
Q psy15069 348 ICAFCYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPIAGFLYDSTLSYSPAFFL 427 (461)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~gp~i~g~l~~~~g~~~~~f~~ 427 (461)
+..+.++.+.+++..++.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+++++.+..| |+..|++
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~ 159 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence 777788999999999999999999999999999999999999999999999999999999999999998764 9999998
Q ss_pred HhHHHHHHHH
Q psy15069 428 AGGAIFVSGV 437 (461)
Q Consensus 428 ~~~~~l~~~~ 437 (461)
.+++.++..+
T Consensus 160 ~~~~~~~~~~ 169 (375)
T 2gfp_A 160 LLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 8887776665
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.59 E-value=4.8e-15 Score=150.22 Aligned_cols=174 Identities=13% Similarity=0.027 Sum_probs=147.3
Q ss_pred chhHHHHHHHHHHHhhccccchhhHhhHH-HHhC------CCchhhHHHHHHHhhhhhhhhhhhhhccCCC-CcchhHHH
Q psy15069 264 DPIFILFTISNIFTSIGFNVPYVYIVKLA-EQRG------VTRSNASSLISIVGAANMVSRVILGYISDRP-CVNRLYIY 335 (461)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g------~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~ 335 (461)
++.++.+.+..++..++++....+++.|+ +++| ++..+.+++.+...++..++.++.|+++||+ |+|+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~-- 88 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI-- 88 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH--
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--
Confidence 34677788888888888888899999988 6789 9999999999999999999999999999997 655543
Q ss_pred HHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCccchhHHHHH---HHHHHHhhhhhcccee
Q psy15069 336 NGCLAICGAATVICAFCY-NYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGL---LLLFQGIASLVGPPIA 411 (461)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~g~~~gp~i~ 411 (461)
..+.++.+++.++..+.+ +.+.+++..++.|++.+...+...+++.|.+|+++|+++.+. .+...++|..+||.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677777777777 888899999999999999999999999999999999776665 8999999999999999
Q ss_pred eeeecccCCchHHHHHHhHHHHHHHHHHH
Q psy15069 412 GFLYDSTLSYSPAFFLAGGAIFVSGVMLF 440 (461)
Q Consensus 412 g~l~~~~g~~~~~f~~~~~~~l~~~~~~~ 440 (461)
|.+.+.. +|+..|++.+++.+++.+..+
T Consensus 169 ~~l~~~~-g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 169 PLLLKNF-GAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp THHHHTS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccc-cHHHHHHHHHHHHHHHHHHHH
Confidence 9999876 499999988887776665544
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.23 E-value=1.3e-11 Score=121.33 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=118.0
Q ss_pred CccHHHHHHHHHHhhhhhhHhhHhhhhhcCcceeeehhhHHHHHHHHHhhcccchhhHHHHhhccccccccccchhHHHH
Q psy15069 22 DGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAILGSACLAVSVFAKNVITLCITIGFGTGLGFGLIYLPAIVS 101 (461)
Q Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~g~~~~~~~~~l~~~~~~~~~l~i~~~~l~G~g~~~~~~~~~~~ 101 (461)
....++..++..+...++.++.|++.||+|+|+++..+.++.+++.++.++.++.+.+++. .++.+++.+...+....+
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVIL-KTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4556888888888888899999999999999999999999988888888888887777764 567777766666666778
Q ss_pred HHhhhh-ccchhhhhhh-ccchhhhHHHHhHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhccc
Q psy15069 102 VTCYFE-RLRSLATGIA-VCGSGLGTIIFAPIIDYTVREYGWKITLLVLSVTVLSAVLFGILLRP 164 (461)
Q Consensus 102 ~~~~f~-~~rg~a~gi~-~~~~~lg~~i~~~l~~~l~~~~gw~~~f~i~~~~~l~~~i~~~~~~~ 164 (461)
+.+.+| +.|+.+.++. +++.++|..++|.+.+.+.+.+|++..|.+.++++++..+..++..+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888885 7799999994 88889999999999999999889999999998888877766555444
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.23 E-value=1.8e-11 Score=122.73 Aligned_cols=158 Identities=13% Similarity=0.006 Sum_probs=115.2
Q ss_pred ccchhhHhhHHHHhC--------CCchhhHHHHHHHhhhhhhhhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHhh---
Q psy15069 282 NVPYVYIVKLAEQRG--------VTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGAATVICA--- 350 (461)
Q Consensus 282 ~~~~~~~~~~~~~~g--------~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--- 350 (461)
..+...+|.+.++++ .+..+.+++.+.+.++.++|.+++|+++||+|||+.++ ++.++..++.++..
T Consensus 29 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~--~~~~l~~i~~i~~a~~~ 106 (491)
T 4gc0_A 29 AVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK--IAAVLFFISGVGSAWPE 106 (491)
T ss_dssp HGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHh
Confidence 344445555544442 23345678888899999999999999999977665544 55555555555544
Q ss_pred ---------------hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCccchhHHHHHHHHHHHhhhhhccceeeeee
Q psy15069 351 ---------------FCYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPIAGFLY 415 (461)
Q Consensus 351 ---------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~gp~i~g~l~ 415 (461)
++++++.+++.+++.|++.|...+..+.++.|..|+++|+...++.+....+|..+++.++..+.
T Consensus 107 ~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 107 LGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp TTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 46789999999999999999999999999999999999999999999999999888887766554
Q ss_pred ccc-------CCchHHHHHHhHHHHHHHHHHHH
Q psy15069 416 DST-------LSYSPAFFLAGGAIFVSGVMLFV 441 (461)
Q Consensus 416 ~~~-------g~~~~~f~~~~~~~l~~~~~~~~ 441 (461)
+.. ..|+..+....+..++..+..+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
T 4gc0_A 187 RSGDASWLNTDGWRYMFASECIPALLFLMLLYT 219 (491)
T ss_dssp TTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGG
T ss_pred cccccccccchhhHHHhhhhhhhhhhhhhhhhc
Confidence 322 12555555555554444444433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=53.83 E-value=2.7 Score=21.15 Aligned_cols=14 Identities=14% Similarity=0.574 Sum_probs=11.1
Q ss_pred hhHhhhhhcCccee
Q psy15069 42 ISSAFVNKYGCRNV 55 (461)
Q Consensus 42 ~~g~l~dr~G~r~~ 55 (461)
++|.++++||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36889999999854
No 16
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=29.63 E-value=70 Score=20.38 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=4.0
Q ss_pred HHhHHHHHHH
Q psy15069 427 LAGGAIFVSG 436 (461)
Q Consensus 427 ~~~~~~l~~~ 436 (461)
+.+.+.+++.
T Consensus 19 vl~GLllL~l 28 (54)
T 2knc_A 19 VLGGLLLLTI 28 (54)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 17
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=26.11 E-value=99 Score=20.73 Aligned_cols=16 Identities=19% Similarity=0.698 Sum_probs=6.1
Q ss_pred HHhHHHHHHHHHHHHH
Q psy15069 427 LAGGAIFVSGVMLFVI 442 (461)
Q Consensus 427 ~~~~~~l~~~~~~~~~ 442 (461)
++++++++..++.++-
T Consensus 22 ifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 22 VIAGILFILGILIVLS 37 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3333333333333333
No 18
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=24.07 E-value=3.8e+02 Score=24.97 Aligned_cols=6 Identities=17% Similarity=0.058 Sum_probs=2.5
Q ss_pred hhhcCc
Q psy15069 47 VNKYGC 52 (461)
Q Consensus 47 ~dr~G~ 52 (461)
...-|+
T Consensus 34 ~~~~G~ 39 (444)
T 3gia_A 34 AKIAGR 39 (444)
T ss_dssp HHHHGG
T ss_pred HHHhCc
Confidence 344444
Done!