RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15069
(461 letters)
>gnl|CDD|233173 TIGR00892, 2A0113, monocarboxylate transporter 1. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 455
Score = 214 bits (547), Expect = 2e-64
Identities = 129/465 (27%), Positives = 217/465 (46%), Gaps = 61/465 (13%)
Query: 2 GVTYSF----GILFIEFTKVFQEGDGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTI 57
G +Y+F + F E ++FQ T+WI+SI++ V GPISS VN++GCR V I
Sbjct: 29 GFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVI 88
Query: 58 CGAILGSACLAVSVFAKNVITLCITIGFGTGLGFGLIYLPAIVSVTCYFERLRSLATGIA 117
G +L S + ++ F+ NVI L +T GF TGLG + P++ + YF R R LA G+A
Sbjct: 89 AGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLA 148
Query: 118 VCGSGLGTIIFAPIIDYTVREYGWKITLLVLSVTVLSAVLFGILLRPLEEQPVEEPVEDG 177
+ GS + AP+ Y +GW+ + L+L +L + G L+RP+ +
Sbjct: 149 MAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSK-- 206
Query: 178 ALPHLRIIIFEVKPKQRALTAVSTSIWQPSTAISTGPTEVISTQAQIDSKATVPESESTE 237
SK +P ST+
Sbjct: 207 ------------------------------------------------SKEGLPPDGSTK 218
Query: 238 DKTTCLNLSDDTKQTLREMLDMELLRDPIFILFTISNIFTSIGFNVPYVYIVKLAEQRGV 297
K + + T + + LD L F+++ N+ +GF P +++V A+ +GV
Sbjct: 219 -KLSKKS----TAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGV 273
Query: 298 TRSNASSLISIVGAANMVSRVILGYISDRPCV--NRLYIYNGCLAICGAATVICAFCYNY 355
A+ L+SI+G ++ +R G I+ + + Y+++ L G ++CA +Y
Sbjct: 274 DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDY 333
Query: 356 VELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPIAGFLY 415
L IY FG G+ L +L+DL+G R ++A GL+ + + A L+GPP+AG L
Sbjct: 334 TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV 393
Query: 416 DSTLSYSPAFFLAGGAIFVSGVMLFVIPSLQSYLLKRKEKKLSSE 460
D+T +Y F+ +G + +G+ L + + LL +++K
Sbjct: 394 DATKNYKYIFYASGSIVVSAGLFLAIGNYINYRLLAKEQKAALER 438
Score = 28.9 bits (65), Expect = 5.6
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 276 FTSIGFNVPY-----VYIVKLAEQRGVTRSNASSLISIVGA----ANMVSRVILGYISDR 326
F SIGF+ + V+ +L + T S + + SI+ A +S +++ R
Sbjct: 25 FVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCR 84
Query: 327 PCVNRLYIYNGCLAICGAATVICAFCYNYVELAIYAGVFGAM 368
P V I G LA G ++ +F N +EL + AG +
Sbjct: 85 PVV----IAGGLLASLG--MILASFSSNVIELYLTAGFITGL 120
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 71.2 bits (175), Expect = 2e-13
Identities = 37/184 (20%), Positives = 75/184 (40%), Gaps = 2/184 (1%)
Query: 267 FILFTISNIFTSIGFNVPYVYIVKLAEQRGVTRSNASSLISIVGAANMVSRVILGYISDR 326
+L + + + + + LAE G++ S A ++S + ++ GY+SDR
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 327 PCVNRLYIYNGCLAICGAATVICAFCYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGL 386
R + L + +++ AF + L + + G GA + ++ +
Sbjct: 61 --FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118
Query: 387 DRLTNAFGLLLLFQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVSGVMLFVIPSLQ 446
A GL G+ +L+GP + G L +S LA + ++ ++LF++ L
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLL 178
Query: 447 SYLL 450
L
Sbjct: 179 LLAL 182
Score = 70.4 bits (173), Expect = 3e-13
Identities = 35/180 (19%), Positives = 74/180 (41%), Gaps = 3/180 (1%)
Query: 265 PIFILFTISNIFTSIGFNVPYVYIVKLAEQ-RGVTRSNASSLISIVGAANMVSRVILGYI 323
+ +L ++ S G+ Y+ ++ G++ + A L+S+ G ++ ++ G +
Sbjct: 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLL 234
Query: 324 SDRPCVNRLYIYNGCLAICGAATVICAFCYNYVELAIYAGVFGAMIGAYVGLTSVILVDL 383
SDR R + L + ++ A + L + + G +G + +L
Sbjct: 235 SDR-LGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASEL 293
Query: 384 LGLDRLTNAFGLLLLFQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVSGVMLFVIP 443
+ A GL F + +GP +AG L D T Y F + ++ ++L ++P
Sbjct: 294 APPEARGTASGLFNTFGSLGGALGPLLAGLLLD-TGGYGGVFLILAALALLAALLLLLLP 352
Score = 64.6 bits (158), Expect = 3e-11
Identities = 33/163 (20%), Positives = 59/163 (36%), Gaps = 2/163 (1%)
Query: 4 TYSFGILFIEFTKVFQEGDGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAILG 63
+ I S ++ +++G R V + G +L
Sbjct: 15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLF 74
Query: 64 SACLAVSVFAKNVITLCITIGFGTGLGFGLIYLPAIVSVTCYF-ERLRSLATGIAVCGSG 122
+ + FA ++ L + F GLG G +Y A + +F + R A G+ G G
Sbjct: 75 ALGSLLLAFASSLWLLLVG-RFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFG 133
Query: 123 LGTIIFAPIIDYTVREYGWKITLLVLSVTVLSAVLFGILLRPL 165
LG ++ + GW+ L+L++ L L + L L
Sbjct: 134 LGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRL 176
Score = 46.5 bits (111), Expect = 2e-05
Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 1/151 (0%)
Query: 14 FTKVFQEGDGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTIC-GAILGSACLAVSVF 72
+V + S+ + + ++ G R + + G +L + L +
Sbjct: 202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261
Query: 73 AKNVITLCITIGFGTGLGFGLIYLPAIVSVTCYFERLRSLATGIAVCGSGLGTIIFAPII 132
A ++ L + + ++ R A+G+ LG + +
Sbjct: 262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321
Query: 133 DYTVREYGWKITLLVLSVTVLSAVLFGILLR 163
+ G+ L+L+ L A L +LL
Sbjct: 322 GLLLDTGGYGGVFLILAALALLAALLLLLLP 352
Score = 31.9 bits (73), Expect = 0.60
Identities = 33/187 (17%), Positives = 69/187 (36%), Gaps = 8/187 (4%)
Query: 266 IFILFTISNIFTSIGFNVPYVYIVKLAEQRGVTRSNASSLISI-VGAANMVSRVILGYIS 324
+ + + + + I + + R A L S G ++ ++ G ++
Sbjct: 90 LLVGRFLLGLGGGALYPAAAALIAEWFPPK--ERGRALGLFSAGFGLGALLGPLLGGLLA 147
Query: 325 DRPCVNRLYIYNGCLAICGAATVICAFCYNYVELAIYAGVFGAMIGAYVGLTSVILVDLL 384
+ L++ L + A ++ L + A F + Y GL + + + L
Sbjct: 148 ESLGWRWLFLILAILGLLLALLLLFLLRL----LLLLALAFFLLSFGYYGLLTYLPLYLQ 203
Query: 385 GLDRLTNAF-GLLLLFQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVSGVMLFVIP 443
+ L+ A GLLL G+ ++G + G L D + + ++L + P
Sbjct: 204 EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP 263
Query: 444 SLQSYLL 450
SL L+
Sbjct: 264 SLALLLV 270
Score = 31.5 bits (72), Expect = 0.99
Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 3/140 (2%)
Query: 24 VTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAILGSACLAVSVFA-KNVITLCIT 82
++ L + G R + + AILG + +F + ++ L +
Sbjct: 124 ALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALA 183
Query: 83 IGFGTGLGFGLIYLPAIVSVTCYFERLRSLATGIAVCGSGLGTIIFAPIIDYTVREYGWK 142
+ +GL+ + L + G+ + GLG I+ A + G +
Sbjct: 184 FFLLSFGYYGLLTY--LPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR 241
Query: 143 ITLLVLSVTVLSAVLFGILL 162
LL++ + + + L + L
Sbjct: 242 RLLLLIGLLLAALGLLLLAL 261
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 62.8 bits (153), Expect = 1e-10
Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 3/174 (1%)
Query: 269 LFTISNIFTSIGFNVPYVYIVKLAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPC 328
LF + + + + LAE G++ + L++ +++ + G +SDR
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDR-- 58
Query: 329 VNRLYIYNGCLAICGAATVICAFCYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDR 388
R + L + ++ F + L + + G GA + ++ D +
Sbjct: 59 FGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEE 118
Query: 389 LTNAFGLLLLFQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVSGVMLFVI 442
A GLL G+ + +GP + G L + AF + ++ V+ ++
Sbjct: 119 RGRALGLLSAGFGLGAALGPLLGGLLASL-FGWRAAFLILAILALLAAVLAALL 171
Score = 56.3 bits (136), Expect = 1e-08
Identities = 37/203 (18%), Positives = 78/203 (38%), Gaps = 2/203 (0%)
Query: 2 GVTYSFGILFIEFTKVFQEGDGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAI 61
G + L + + + + + P++ +++G R V + G +
Sbjct: 11 GRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLL 70
Query: 62 LGSACLAVSVFAKNVITLCITIGFGTGLGFGLIYLPAIVSVTCYF-ERLRSLATGIAVCG 120
L + L + +FA ++ L + + GLG G ++ A + +F R A G+ G
Sbjct: 71 LFALGLLLLLFASSLWLLLV-LRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAG 129
Query: 121 SGLGTIIFAPIIDYTVREYGWKITLLVLSVTVLSAVLFGILLRPLEEQPVEEPVEDGALP 180
GLG + + +GW+ L+L++ L A + LL P + P P
Sbjct: 130 FGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAP 189
Query: 181 HLRIIIFEVKPKQRALTAVSTSI 203
+ +++ + L + +
Sbjct: 190 APLVPAWKLLLRDPVLWLLLALL 212
Score = 50.5 bits (121), Expect = 7e-07
Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 2/150 (1%)
Query: 260 ELLRDPIFILFTISNIFTSIGFNVPYVYIVKLAEQRGVTRSNASSLISIVGAANMVSRVI 319
LLRDP+ L + F Y+ E G++ A L+ + G + R++
Sbjct: 198 LLLRDPVLWLLLAL-LLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLL 256
Query: 320 LGYISDR-PCVNRLYIYNGCLAICGAATVICAFCYNYVELAIYAGVFGAMIGAYVGLTSV 378
LG +SDR RL + L + + + + + L + + G G +
Sbjct: 257 LGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNA 316
Query: 379 ILVDLLGLDRLTNAFGLLLLFQGIASLVGP 408
++ DL + A GL + +GP
Sbjct: 317 LVSDLAPKEERGTASGLYNTAGSLGGALGP 346
Score = 30.9 bits (70), Expect = 1.6
Identities = 17/132 (12%), Positives = 42/132 (31%), Gaps = 5/132 (3%)
Query: 2 GVTYSFGILFIEFTKVFQEGDGVTSWIASILVGVTLCSGPISSAFVNKYGCRN---VTIC 58
++ + +V + + + + + ++ G R + +
Sbjct: 216 FAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALL 275
Query: 59 GAILGSACLAVSVFAKNVITLCITIGFGTGLGFGLIYLPAIVSVTCYF-ERLRSLATGIA 117
IL + LA+ ++ + G G GL++ V+ + R A+G+
Sbjct: 276 LLILAALGLALLSLTES-SLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLY 334
Query: 118 VCGSGLGTIIFA 129
LG +
Sbjct: 335 NTAGSLGGALGP 346
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 58.2 bits (141), Expect = 3e-09
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
Query: 2 GVTYSFGILFIEFTKVFQEG-DGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGA 60
G Y++ +L + F G V W +L+G+ + S P+ +K+G R V + G
Sbjct: 17 GYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAM-SMPVGGLLADKFGPRAVAMLGG 75
Query: 61 ILGSACLAVSVFAKNVITLCITIGFGTGLGFGLIYLPAIVSVTCYFERLRSLATGIAVCG 120
IL A ++ L +T G G G+ Y A+ + +F R LA+GI + G
Sbjct: 76 ILYGLGFTFYAIADSLAALYLTYGLA-SAGVGIAYGIALNTAVKWFPDKRGLASGIIIGG 134
Query: 121 SGLGTIIFAPIIDYTVREYGWKITLLVLSVTVLSAVLFGILL 162
GLG+ I +P+I + G + + + L ++ G L
Sbjct: 135 YGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFL 176
Score = 35.1 bits (81), Expect = 0.064
Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 9/180 (5%)
Query: 260 ELLRDPIFILFTISNIFTSIGFNVPYV--YIVKLAEQRGVTRSNASSLISIVGAANMVSR 317
E+LR P F + +S F + + + G++ +SI N R
Sbjct: 200 EMLRTPQFWVLYLS--FFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGR 257
Query: 318 VILGYISDRPCVNRLYIYNGCLAICGAATVICAFCYNYVELAIYAGVF--GAMIGAYVGL 375
LG +SD+ + R + I F ++ A V G + L
Sbjct: 258 PFLGALSDK--IGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISL 315
Query: 376 TSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVS 435
++ D+ G +G L + +A + G IA + + + F + G S
Sbjct: 316 FPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL-TEIGFEYTFIVTGAFALTS 374
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 50.0 bits (120), Expect = 1e-07
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 4/140 (2%)
Query: 305 LISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGAATVICAFCYNYVELAIYAGV 364
L++ ++ + G ++DR R + L I +T + A N L I A
Sbjct: 3 LLAGYALGQLIYSPLSGLLTDR--FGRKPVLLVGLFIFVLSTAMFALSSNITVLII-ARF 59
Query: 365 FGAMIGAYVGLTSVILV-DLLGLDRLTNAFGLLLLFQGIASLVGPPIAGFLYDSTLSYSP 423
A+ + L+ D+ + A GL+ + L+GPP+ G L +P
Sbjct: 60 LQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAP 119
Query: 424 AFFLAGGAIFVSGVMLFVIP 443
FLA A+ ++ F++P
Sbjct: 120 FLFLAILALAAFILLAFLLP 139
Score = 36.5 bits (85), Expect = 0.007
Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 17/145 (11%)
Query: 28 IASILVGVTLCSGPISSAFVNKYGCRNVTICGAILGSACLAVSVFAKNVITLCIT---IG 84
+A +G + P+S +++G + V + G + A+ + N+ L I G
Sbjct: 4 LAGYALGQLIY-SPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQG 62
Query: 85 FGTGLGFGLIYLPAIVSVTCYFERL-----RSLATGIAVCGSGLGTIIFAPIIDYTVREY 139
FG A+V+ + R +A G+ G LG ++ P+ +
Sbjct: 63 FGAA--------FALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL 114
Query: 140 GWKITLLVLSVTVLSAVLFGILLRP 164
GW+ L L++ L+A + L P
Sbjct: 115 GWRAPFLFLAILALAAFILLAFLLP 139
Score = 27.6 bits (62), Expect = 6.9
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 115 GIAVCGSGLGTIIFAPIIDYTVREYGWKITLLV-LSVTVLSAVLF 158
G+ + G LG +I++P+ +G K LLV L + VLS +F
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF 45
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 47.7 bits (114), Expect = 6e-06
Identities = 62/352 (17%), Positives = 123/352 (34%), Gaps = 51/352 (14%)
Query: 27 WIASILVGVTLCSGPISSAFVNKYGCRNVTICGAILGSACLAVSVFAKNVITLCITIGFG 86
++ S + ++ G R V + +L S + A NV L I + F
Sbjct: 56 FLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLI-LRFL 114
Query: 87 TGLGFGLIYLPAIVSVTCYF-ERLRSLATGIAVCGSGLGTIIFAPIIDYTVREYGWKITL 145
GLG G + V+ Y +R R A G+ CG +G + + + + +GW+
Sbjct: 115 AGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLF 174
Query: 146 LVLSVTVLSAVLFGILLRPLEEQPVEEPVEDGALPHLRIIIFEVKPKQRALTAVSTSIWQ 205
V + +L +L+R L E I F V + + + +
Sbjct: 175 YV--GGIAPLLLLLLLMRFLPES----------------IDFLVSKRPETVRRIVNA--- 213
Query: 206 PSTAISTGPTEVISTQAQIDSKATVPESESTEDKTTCLNLSDDTKQTLREMLDMELLRDP 265
I+ Q Q ++++ +PE ++T+ + + +T R +
Sbjct: 214 ------------IAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITV-------- 253
Query: 266 IFILFTISNIFTSIGFNVPYVYIVKLAEQRGVTRSNASSLISIVGAANMVSRVILGYISD 325
L + +G ++ KL + G + S A++ ++ ++ +I G+++D
Sbjct: 254 ---LLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLAD 310
Query: 326 RPCVNRLYIYNGCLAICGAATVICAFCYNYVELAIYAGVFGAM--IGAYVGL 375
R + L + V+ L + G G GL
Sbjct: 311 R---LGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGL 359
Score = 38.5 bits (90), Expect = 0.005
Identities = 29/167 (17%), Positives = 68/167 (40%), Gaps = 4/167 (2%)
Query: 291 LAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGAATVICA 350
++ + G+ L S + G ++DR + R + + + T++CA
Sbjct: 43 ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR--IGRRRVLLWSILLFSVFTLLCA 100
Query: 351 FCYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPI 410
N +L I + G +G + + ++ + A GL+ I + VG +
Sbjct: 101 LATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL 160
Query: 411 AGFLYDSTLSYSPAFFLAGGA-IFVSGVMLFVIPSLQSYLLKRKEKK 456
AG+L + F++ G A + + +++ +P +L+ ++ +
Sbjct: 161 AGWLI-PVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPET 206
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 47.3 bits (113), Expect = 8e-06
Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 12/153 (7%)
Query: 300 SNASSLISIVGAANMVSRVIL----GYISDRPCVNRLYIYNGC-LAICGAATVICAFCYN 354
+ ++S++S+ A M+ V+L G ++DR +R + G L V+
Sbjct: 30 TGSASVLSLAALAGMLPYVVLSPIAGALADR--YDRKKVMIGADLIRAVLVAVLPFVALL 87
Query: 355 YVE----LAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPI 410
+ + AG+ + +L DL+ ++LT A L + + +VGP I
Sbjct: 88 GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGI 147
Query: 411 AGFLYDSTLSYSPAFFLAGGAIFVSGVMLFVIP 443
G +Y +TL A ++ +S +++ +
Sbjct: 148 GGLMY-ATLGIKWAIWVDAVGFAISALLIVSVR 179
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 46.5 bits (111), Expect = 2e-05
Identities = 27/153 (17%), Positives = 63/153 (41%), Gaps = 2/153 (1%)
Query: 291 LAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGAATVICA 350
+A GV+ A LI+ + +L ++ R + R + G LA+ + ++ A
Sbjct: 39 IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR--LERRRLLLGLLALFIVSNLLSA 96
Query: 351 FCYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPI 410
++ L + + G G + + + + L+ + A L+ +A+++G P+
Sbjct: 97 LAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPL 156
Query: 411 AGFLYDSTLSYSPAFFLAGGAIFVSGVMLFVIP 443
FL + +A A+ ++ ++P
Sbjct: 157 GTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189
Score = 33.4 bits (77), Expect = 0.25
Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 6/163 (3%)
Query: 23 GVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAILGSACLAVSVFAKNVITLCIT 82
G + + P+ + + R + + L +S A + L +
Sbjct: 48 GAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLA 107
Query: 83 ---IGFGTGLGFGLIYLPAIVSVTCYFERLRSLATGIAVCGSGLGTIIFAPIIDYTVREY 139
G G+ + + A V R A + G L T++ P+ + + +
Sbjct: 108 RALAGLAHGVFWSIAAALAARLVP---PGKRGRALALVFTGLTLATVLGVPLGTFLGQLF 164
Query: 140 GWKITLLVLSVTVLSAVLFGILLRPLEEQPVEEPVEDGALPHL 182
GW+ T L ++V L A+L L P E P L L
Sbjct: 165 GWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRL 207
Score = 32.6 bits (75), Expect = 0.39
Identities = 29/170 (17%), Positives = 53/170 (31%), Gaps = 7/170 (4%)
Query: 280 GFNVPYVYIVKLAEQR-GVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGC 338
G Y YI E G + S S ++ G A + ++ G ++DR L
Sbjct: 226 GHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLL 285
Query: 339 LAICGAATVICAFCYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLL 398
LA+ A + + ++G + L L +
Sbjct: 286 LAL--ALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAA 343
Query: 399 FQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVSGVMLFVIPSLQSY 448
F + +G + G + D + A GA + +L + S +
Sbjct: 344 FN-LGIALGAALGGLVLD---ALGYAATGWVGAALLLLALLLALLSARKD 389
Score = 30.7 bits (70), Expect = 1.5
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 358 LAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPIAGFLYDS 417
L Y + L + G +A L+LL GIA +G + G L D
Sbjct: 217 LLATFLFMTGHFALYTYI-RPFLESVAGFS--VSAVSLVLLAFGIAGFIGNLLGGRLAD- 272
Query: 418 TLSYSPAFFLAGGAIFVSGVMLFVIPSLQSYLL 450
P L + ++ +L + + S L
Sbjct: 273 ---RGPRRALIAALLLLALALLALTFTGASPAL 302
>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter. This model
represents a subgroup of the more broadly defined model
TIGR00890, which in turn belongs to the Major
Facilitator transporter family. Seed members for this
family include the known oxalate/formate antiporter of
Oxalobacter formigenes, as well as transporter subunits
co-clustered with the two genes of a system that
decarboxylates oxalate into formate. In many of these
cassettes, two subunits are found rather than one,
suggesting the antiporter is sometimes homodimeric,
sometimes heterodimeric.
Length = 405
Score = 45.9 bits (109), Expect = 2e-05
Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 3/165 (1%)
Query: 2 GVTYSFGILFIEFTKVFQEGDGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAI 61
+ Y + + G ++ V PI FV+KYG R V + G I
Sbjct: 17 NLQYGWTLFVNPIDATHGWGRAAIQVAFTLFVVTETWLVPIEGWFVDKYGPRIVVMFGGI 76
Query: 62 LGSACLAVSVFAKNVITLCITIGFGTGLGFGLIYLPAIVSVTCYFERLRSLATGIAVCGS 121
+ ++ +A ++ L G+G G +Y + + +F R LA G+ G
Sbjct: 77 MCGLGWVLNAYADSLPALYAAAVVA-GIGAGAVYGTCVGNALKWFPDKRGLAAGLTAAGF 135
Query: 122 GLGTIIFAPIIDYTVREYGWKITLLV--LSVTVLSAVLFGILLRP 164
G G + I ++ G++ + L ++ +L +L P
Sbjct: 136 GAGAALTVVPIAAMIKVSGYQAAFMYFGLGQGIVIVLLALLLRAP 180
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 42.7 bits (101), Expect = 3e-04
Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 20/231 (8%)
Query: 225 DSKATVPESESTEDKTTCLNLSDDTKQTLREMLDMELLRDPIFIL-----FTISNIFTSI 279
+K E + T ++ ELL+D F ++
Sbjct: 175 KAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFF 234
Query: 280 GFNVPYVYIVKLAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCL 339
P Y+V+ +RG++ A + S+ G + ++ G +SD +
Sbjct: 235 LTWFP-TYLVQ---ERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARK 290
Query: 340 --AICGAATVICAFCYNYVELAIYA------GVFGAMIGAYVGLTSVILVDLLGLDRLTN 391
I G + F NYV + A G FG GA + ++ D +
Sbjct: 291 TAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGA---IGWALISDNAPGNIAGL 347
Query: 392 AFGLLLLFQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVSGVMLFVI 442
GL+ + +VGP + G + +T S++ A + + + ++
Sbjct: 348 TGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLLL 398
Score = 35.8 bits (83), Expect = 0.047
Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 6/155 (3%)
Query: 26 SWIASIL-VGVTLCSGPISSAFVNKYGCRNVTICGAILGSACLAVSVFAKNVITLCITIG 84
++ S G + ++++G R T+ I+ +
Sbjct: 32 GYVFSAFSWGYVVG-QFPGGWLLDRFGAR-KTLAVFIVIWGVFTGLQAFAGAYVSLYILR 89
Query: 85 FGTGLGFGLIYLPAIVSVTCYF-ERLRSLATGIAVCGSGLGTIIFAPIIDYTVREYGWKI 143
G + I+ V +F R+ A I GLG II P++ + + + W+
Sbjct: 90 VLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQW 149
Query: 144 TLLVLSV--TVLSAVLFGILLRPLEEQPVEEPVED 176
++ V + + + P ++ E
Sbjct: 150 AFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEK 184
Score = 31.2 bits (71), Expect = 1.1
Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 4/156 (2%)
Query: 289 VKLAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGAATVI 348
L E G++ + + S +V + G++ DR + + I G T +
Sbjct: 18 PMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK--TLAVFIVIWGVFTGL 75
Query: 349 CAFCYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGP 408
AF YV L I + GA + +I+ A + QG+ ++G
Sbjct: 76 QAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGG 135
Query: 409 PIAGFLYDSTLSYSPAFFLAGG-AIFVSGVMLFVIP 443
P+ G++ S+ AF + G I + L IP
Sbjct: 136 PLVGWIL-IHFSWQWAFIIEGVLGIIWGVLWLKFIP 170
>gnl|CDD|182234 PRK10091, PRK10091, MFS transport protein AraJ; Provisional.
Length = 382
Score = 39.3 bits (92), Expect = 0.003
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 306 ISIVGAANMVSRVILGYISDRPCVNRL-------YIYNGCLAICGAATVICAFCYNYVEL 358
ISI A +M+S LG + P + +I +A+C + +Y+ L
Sbjct: 35 ISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLML 94
Query: 359 AIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPIAGFLYDST 418
AI V G GA+ G+ +++L ++ ++T A ++ +A+L+G P+ +L
Sbjct: 95 AIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL-SQE 153
Query: 419 LSYSPAFFLAGG 430
S+ F L
Sbjct: 154 FSWRYTFLLIAV 165
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 39.1 bits (91), Expect = 0.004
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 23 GVTSWIASILVGVTLCSGPISSAF----VNKYGCRNVTICGAILGSACLAVSVFAKNVIT 78
G+T + L P A +K+G + + + + S +S A VI
Sbjct: 49 GLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIM 108
Query: 79 LCITIGFGTGLGFGLIYLPA-IVSVTCYFERLRSLATGIAVCGSGLGTIIFAPIIDYTVR 137
L ++ F G+G Y A +V + + L+S A+ V G G+G II A +
Sbjct: 109 LTLS-RFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE 167
Query: 138 EYGWKITLLVLSVTVL 153
YGW+ V + VL
Sbjct: 168 AYGWRAAFFVGLLPVL 183
>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP)
family. This family consists of several eukaryotic
Organic-Anion-Transporting Polypeptides (OATPs). Several
have been identified mostly in human and rat. Different
OATPs vary in tissue distribution and substrate
specificity. Since the numbering of different OATPs in
particular species was based originally on the order of
discovery, similarly numbered OATPs in humans and rats
did not necessarily correspond in function, tissue
distribution and substrate specificity (in spite of the
name, some OATPs also transport organic cations and
neutral molecules). Thus, Tamai et al. initiated the
current scheme of using digits for rat OATPs and letters
for human ones. Prostaglandin transporter (PGT) proteins
are also considered to be OATP family members. In
addition, the methotrexate transporter OATK is closely
related to OATPs. This family also includes several
predicted proteins from Caenorhabditis elegans and
Drosophila melanogaster. This similarity was not
previously noted. Note: Members of this family are
described (in the Swiss-Prot database) as belonging to
the SLC21 family of transporters.
Length = 582
Score = 39.2 bits (92), Expect = 0.004
Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 15/135 (11%)
Query: 227 KATVPESESTEDKTTCLNLSDDTKQTLREMLDM-----ELLRDPIFILFTISNIFTSIGF 281
+ P+++ K K + D LL +P F+L ++ +F S
Sbjct: 262 DLSRPKAKDETRKQA--EEPKSGKSAPDFLKDFPKTLKRLLTNPTFMLVVLAQVFESSVI 319
Query: 282 NVPYVYIVKLAE-QRGVTRSNASSLISIVG-AANMVSRVILGYISDRPCVNRLYI-YNGC 338
++ K E Q G++ S A+ LI +V A V ++ G I + + + G
Sbjct: 320 AGYSTFLPKYLETQYGLSASYANFLIGVVNLPAAAVGILLGGLI-----IKKFKLTARGM 374
Query: 339 LAICGAATVICAFCY 353
++ Y
Sbjct: 375 AKFAIFVILVSLAFY 389
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 39.1 bits (91), Expect = 0.004
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 286 VYIVKLAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGAA 345
+ + ++A + G+T +A+SLIS + ++ G DR R + + A
Sbjct: 33 LVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR--YGRRLPMVTSIVLFSAG 90
Query: 346 TVICAFCYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLL 396
T+ C F Y+ + I V G +G G ++ +++ A GLL
Sbjct: 91 TLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLL 141
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 38.4 bits (90), Expect = 0.008
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 12/162 (7%)
Query: 300 SNASSLISIVGAANMVSRVIL----GYISDRPCVNRLYIYNGCLAICGAATVICAFCYNY 355
S L +IV A ++ ++L G+++D+ NR+ + G +I Y
Sbjct: 43 SEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEV-GLTLLIVLAYYLG 101
Query: 356 VELAIYAGVF--GAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPIAGF 413
+A F GA Y I+ +L+G + L+ A GLL F +A L G + F
Sbjct: 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSF 161
Query: 414 LYDSTLSYSPAFFLAGGAIFVSGVMLFVIPSLQ---SYLLKR 452
L++S +P+ L G I +G++L + L +Y L +
Sbjct: 162 LFESVNGNTPSEIL--GRIAPAGLVLLAVAVLGLIFAYRLPK 201
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 36.1 bits (84), Expect = 0.034
Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 15/172 (8%)
Query: 15 TKVFQEGDGVTSWIASILVGVTL-CSGPISSAFVNKYGCRNVTICGAILGSACLAV---- 69
+F+ S + +I+VGV I+ V+++G R + + GA + C V
Sbjct: 277 PTIFETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVA 336
Query: 70 -----SVFAKNVITLCITIGFGTGLGFGLIYLPAIVSVTCYFERLRSLATGIAVCGSGLG 124
++ + + F G +P ++ + +R A IA + L
Sbjct: 337 LLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLA 396
Query: 125 TIIFAPIIDYTVREYGWKITLLVLSVTVLSAVLFGILL-----RPLEEQPVE 171
+ + G + L+ + VL + + R LEE
Sbjct: 397 NFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDEL 448
Score = 30.3 bits (69), Expect = 2.2
Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 12/152 (7%)
Query: 25 TSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAILGSACLAVSVFAKNVITLCITIG 84
+ I SI L + +++G + + G +L + FAK + +G
Sbjct: 48 SGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVG 107
Query: 85 -FGTGLGFGLIYLPAIVSVTC---YFERLRSLATGI---AVCGSGLGTIIFAPIIDYTVR 137
GLG G I +V + ++LR + + L I ++
Sbjct: 108 RVIVGLGVGGIS--VLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSN 165
Query: 138 EYGWKITLLVLSVTVLSAVLFGILLRPLEEQP 169
GW+I L + + A+L I L L E P
Sbjct: 166 SDGWRIP---LGLQFVPAILLLIGLLFLPESP 194
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 33.7 bits (78), Expect = 0.19
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 22 DGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAILGSACLAVSVFA-----KNV 76
G+ S + I + P+ ++G + + G +L + L + F
Sbjct: 256 AGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLF 315
Query: 77 ITLCITIGFGTGLGFGLIY 95
+ L + G G GL L +
Sbjct: 316 LVLVVLAGIGLGLATLLPW 334
Score = 32.2 bits (74), Expect = 0.57
Identities = 33/211 (15%), Positives = 70/211 (33%), Gaps = 27/211 (12%)
Query: 246 SDDTKQTLREMLDMELLRDPIFILFTISNIFTSIGFNV-----PYV--YIVKLAEQRGVT 298
K +LR+M L ++ ++ + + ++ V Y Y++ A
Sbjct: 204 EQKEKVSLRDMFKA-LFKNRPLLILLLLYLLNALAMAVRNGLLLYYFTYVLGNAGL---- 258
Query: 299 RSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGAATVICAFCYNYVEL 358
S L+ I A ++ + +++ R R ++ LA G + +
Sbjct: 259 ---FSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLF 315
Query: 359 AIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTN-------AFGLLLLFQGIASLVGPPIA 411
+ + G +G L +L D++ F L + +G I
Sbjct: 316 LVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGGAIV 375
Query: 412 GFL-----YDSTLSYSPAFFLAGGAIFVSGV 437
G L Y + + A L+G + + +
Sbjct: 376 GLLLAFAGYVANATAQSAAALSGIRLLFTLI 406
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 31.9 bits (73), Expect = 0.82
Identities = 38/205 (18%), Positives = 70/205 (34%), Gaps = 23/205 (11%)
Query: 247 DDTKQTLREMLDMELLRDPIFILFT------ISNIFTSIGFNVPY----VYIVKLAEQR- 295
++T + + R PI T + + I + Y+ Q
Sbjct: 191 EETPVFEKAQEKHKKKRGPIAETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTL 250
Query: 296 GVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGAATVICAFCYNY 355
G++ ++A ++ + ++ + G +SDR + I LA A ++ A +
Sbjct: 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSG 310
Query: 356 VELAIYAGV--FGAMIGAYVGLTSVILVDLLGLDRLTNAFGL-----LLLFQGIASLVGP 408
+ V + G Y G L +L + L +F G A P
Sbjct: 311 SFTLFFFLVLGMALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFA----P 366
Query: 409 PIAGFLYDSTLS-YSPAFFLAGGAI 432
IA L T Y+ ++LA A+
Sbjct: 367 YIAAALVAMTGDWYAIGYYLAALAL 391
>gnl|CDD|219814 pfam08385, DHC_N1, Dynein heavy chain, N-terminal region 1. Dynein
heavy chains interact with other heavy chains to form
dimers, and with intermediate chain-light chain
complexes to form a basal cargo binding unit. The region
featured in this family includes the sequences
implicated in mediating these interactions. It is
thought to be flexible and not to adopt a rigid
conformation.
Length = 577
Score = 31.1 bits (71), Expect = 1.3
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 264 DP-IFILFTISNIFTSIGFNVPYVYIVKLAEQRGVTRSNASSLISIV 309
DP + L +GF VP +A + A SL +V
Sbjct: 484 DPQLISLLKEVRYLQLLGFEVPSS-ASNIASKAERLYPYAVSLEELV 529
>gnl|CDD|179150 PRK00876, nadE, NAD synthetase; Reviewed.
Length = 326
Score = 30.7 bits (70), Expect = 1.4
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 271 TISNIFTSIGFNVPYVYIVKLAEQRGVTRSNASSLISIVGAANMVSRV 318
+ N+ G NV + + + R A++ + IV A N R
Sbjct: 129 VLPNLLDGDGLNVFSLVVQDPDGEVTRKRLPANAYLQIVAATNFKQRT 176
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication,
recombination, and repair].
Length = 542
Score = 31.2 bits (71), Expect = 1.4
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 22/96 (22%)
Query: 122 GLG-TIIFAPIIDYTVREYGWKITLLVLSVTVLSAVLFGILLRPLEEQPVEEPVEDGALP 180
GLG T I A +I +R +G K+ L L+ T +PL Q E + +P
Sbjct: 39 GLGKTFIAAMVIANRLRWFGGKV--LFLAPT-----------KPLVLQHAEFCRKVTGIP 85
Query: 181 HLRIIIF--EVKPKQRALTAVSTSIWQPSTAISTGP 214
I EV+P++R +W P
Sbjct: 86 EDEIAALTGEVRPEEREE------LWAKKKVFVATP 115
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 30.9 bits (70), Expect = 1.4
Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 12/119 (10%)
Query: 59 GAILGSACLAVSVF-------AKNVITLCITIGFGTGLGFGLIYLPAIVSVTCYFER--L 109
+G SV A I L + GL G + PA + +
Sbjct: 106 KWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS-PATHKIIVKWAPPKE 164
Query: 110 RSLATGIAVCGSGLGTIIFAPIIDYTVREY-GWKITLLVLSVTVLSAVLFGILLRPLEE 167
RS G++ G LGT IF PI + + GW + V + V A + P ++
Sbjct: 165 RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGI-VGCAWSLLWFVFPADD 222
>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and
metabolism].
Length = 395
Score = 30.7 bits (70), Expect = 1.5
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 406 VGPPIAGFLYDSTLSYSPAF-FLAGGAIFVSGVMLFVIPS 444
GP + GFL+D+T S+S LA + + L +
Sbjct: 348 FGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAGRN 387
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 30.8 bits (70), Expect = 1.6
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 21/147 (14%)
Query: 271 TISNIFTSIGFNVPYVYIVKLAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVN 330
+ + S+G +Y + +RG SN ++SI G +++ V+ D P V+
Sbjct: 190 FLGLLLLSVGL-GSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVD 248
Query: 331 -RLYIYNGCLAICGAATVICAFCYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRL 389
RL+ Y T+ C + + G++G+ L + L +LG L
Sbjct: 249 LRLFKYR-------NFTIGCVYM-----SLLGLGLYGSFY-----LLPLYLQQVLGYTAL 291
Query: 390 TNAFGLLLLFQGIASLVGPPIAGFLYD 416
GL +L G+A ++ PIAG + D
Sbjct: 292 QA--GLHILPVGLAPMLSSPIAGRMGD 316
>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter. The
Organo Anion Transporter (OAT) Family (TC
2.A.60)Proteins of the OAT family catalyze the
Na+-independent facilitated transport of organic anions
such as bromosulfobromophthalein and prostaglandins as
well as conjugated and unconjugated bile acids
(taurocholate and cholate, respectively). These
transporters have been characterized in mammals, but
homologues are present in C. elegans and A. thaliana.
Some of the mammalian proteins exhibit a high degree of
tissue specificity. For example, the rat OAT is found at
high levels in liver and kidney and at lower levels in
other tissues. These proteins possess 10-12 putative
a-helical transmembrane spanners. They may catalyze
electrogenic anion uniport or anion exchange.
Length = 633
Score = 30.5 bits (69), Expect = 2.2
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 245 LSDDTKQTLREMLDMELLRDPIFILFTISNIFTSIGFNVPYVYIVKLAEQR-GVTRSNAS 303
SD TK + + LL +PI++L ++ + S+ FN ++ K E + G++ + A+
Sbjct: 312 NSDITKDFPKIIK--RLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEAN 369
Query: 304 SLISIVGAANMVSRVILGYI 323
LI +V V LGY+
Sbjct: 370 FLIGVV----NVPAAGLGYL 385
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 30.3 bits (69), Expect = 2.2
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 14 FTKVFQEGDGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAILGS-ACLAVSVF 72
T V + + + L + V K+G + + + G +L + L +
Sbjct: 263 VTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT 322
Query: 73 AKNVITLCITIGFGTGLGFGLIY 95
+ L + G+G G+
Sbjct: 323 PAGSVVLIVVALIIAGVGTGIAN 345
>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport
and metabolism].
Length = 498
Score = 30.3 bits (69), Expect = 2.6
Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 18/167 (10%)
Query: 286 VYIVK-LAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGA 344
+Y+ L + G ++A+ L S G+ ++ +I G+++DR R I + GA
Sbjct: 46 LYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI------VLGA 99
Query: 345 ATVICA-FCYNYVELAIYAGVFGAM--IGAYVGL----TSVILVDLLGLD--RLTNAFGL 395
+ ++ G++ + I GL S +L +L D R F L
Sbjct: 100 ILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTL 159
Query: 396 LLLFQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVSGVMLFVI 442
+ I SL+ P I G L + + F LA + + G+++F++
Sbjct: 160 FYMGINIGSLIAPIITGLLAIN-YGWHVGFGLAAVGMII-GLVIFLL 204
>gnl|CDD|173235 PRK14774, PRK14774, lipoprotein signal peptidase; Provisional.
Length = 185
Score = 28.8 bits (64), Expect = 4.0
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 20/82 (24%)
Query: 295 RGVTRSNASSLISIVGA-------ANMVSRVILGYISDRPCVNRLYIYNGCLAICGAATV 347
R V RS + L I G N+V RV+ G ++D ++ C CG
Sbjct: 80 RWVWRSTPTRLARISGGLLIGGALGNVVDRVLYGAVAD-------FLNMSC---CGIEN- 128
Query: 348 ICAFCYNYVELAIYAGVFGAMI 369
+ +N ++AI+AG FG ++
Sbjct: 129 --PYAFNVADIAIFAGAFGLVL 148
>gnl|CDD|215532 PLN02982, PLN02982, galactinol-raffinose
galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl
compounds.
Length = 865
Score = 29.8 bits (67), Expect = 4.2
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 385 GLDRLTNAFGLLLLFQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVSGVMLFVIPS 444
GLD N + + +G LV P AG YDS SY LA I +GV + VI +
Sbjct: 441 GLDGTMNDLAVDKIVEGGIGLVHPSQAGDFYDSMHSY-----LASVGI--TGVKVDVIHT 493
Query: 445 LQS 447
L+
Sbjct: 494 LEY 496
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 29.3 bits (66), Expect = 4.4
Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 19/150 (12%)
Query: 42 ISSAFVNKYGCRNVTICGAILGSACLAVSVFAKNVITLCITIGFGTGLGFGLIYLPAIVS 101
+ + ++ R G IL + F+ + + + G+ G+ + P +
Sbjct: 49 VMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-TSLWVMAALWALNGIFQGMGWPPCGRT 107
Query: 102 VTCYFERL-RSLATGIAVCGSGLGTIIFAPIIDYTVRE-YGWKITLLVLSVTVLSAVLFG 159
VT +F R R C +G + P++ + + E Y W +V + A++
Sbjct: 108 VTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV---PGIIAIIVS 164
Query: 160 IL-------------LRPLEEQPVEEPVED 176
++ L P EE P EEP D
Sbjct: 165 LICFLLLRDSPQSCGLPPAEEMPNEEPDGD 194
Score = 28.9 bits (65), Expect = 6.9
Identities = 32/184 (17%), Positives = 68/184 (36%), Gaps = 23/184 (12%)
Query: 255 EMLDMELLRDPIFILFTISNIFTSIGFNVPYVYIVK----------LAEQRGVTRSNASS 304
++ +L + + ++ +F VY+V+ L +++G ++ AS
Sbjct: 206 QIFLQYVLLNKVLWYISLGYVF---------VYVVRTGILDWSPLYLTQEKGFSKEKASW 256
Query: 305 LISIVGAANMVSRVILGYISDRPCVNR---LYIYNGCLAICGAATVICAFCYNYVELAIY 361
++ +V ++ G++SD+ R L ++ L I N + I
Sbjct: 257 AFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLIC 316
Query: 362 AGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPIAGFLYDSTLSY 421
G ++ L VI +L A G + F + ++ G+L D +
Sbjct: 317 LFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF-GW 375
Query: 422 SPAF 425
+ AF
Sbjct: 376 AGAF 379
Score = 28.1 bits (63), Expect = 10.0
Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 9/156 (5%)
Query: 291 LAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGAATVICA 350
L E+ G+++++ L+S A +S+ ++G +SDR N L +C +
Sbjct: 21 LVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR--SNPRVFLPIGLILCAIVNLFFG 78
Query: 351 FCYNYVELAI---YAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVG 407
F + +A G+F M G T + + +
Sbjct: 79 FSTSLWVMAALWALNGIFQGMGWPPCGRT---VTKWFSRSERGTWVSFWNCSHNVGGGLL 135
Query: 408 PPIAGFLYDSTLSYSPAFFLAGG-AIFVSGVMLFVI 442
PP+ F S+ F + G AI VS + ++
Sbjct: 136 PPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLL 171
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 29.1 bits (66), Expect = 5.8
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 26 SWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAILGS-ACLAVSVFAKNVIT---LCI 81
S++ SI +G L + V K+G + + G +L L N+ L I
Sbjct: 260 SYMGSIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLII 319
Query: 82 TIGFGTGLGFGLIYL 96
GFG GL++
Sbjct: 320 LAGFGQNFVTGLVWA 334
>gnl|CDD|226440 COG3930, COG3930, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 434
Score = 28.7 bits (64), Expect = 7.3
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 87 TGLGFGLIYLPAIVSVTCYFERLRSLATGIAVCGSGLGTIIFAPIIDYTVREYGW 141
TG GL L ++ ERLR LA + C + L F + + RE+G+
Sbjct: 280 TGTQEGLAILAEYLAGGMTPERLRLLANRVLACAAMLDGADFLDVFHFLTREHGF 334
>gnl|CDD|162096 TIGR00897, 2A0118, polyol permease family. This family of proteins
includes the ribitol and D-arabinitol transporters from
Klebsiella pneumoniae and the alpha-ketoglutarate
permease from Bacillus subtilis [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 402
Score = 28.6 bits (64), Expect = 7.8
Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 20/136 (14%)
Query: 313 NMVSRVILGYISDRPCVNRLYIYNGCLAICGAATVICAFCY-------NYVELAIYAGVF 365
N+V VI G + D+ + G + CG T+ A Y ++ I A
Sbjct: 270 NIVFNVIFGIVGDKLGWMNTVRWFGGVG-CGIFTL--ALYYIPQHFGHSFAVALIIAIAL 326
Query: 366 GAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPIAGFLYDSTLSYSPAF 425
G + YV L +V L A +L L G+++ + P IA F
Sbjct: 327 GIFLAGYVPLAAV--FPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFI--------GF 376
Query: 426 FLAGGAIFVSGVMLFV 441
F A G +++ + V
Sbjct: 377 FGAIGVVWIFAALYVV 392
>gnl|CDD|219907 pfam08566, Pam17, Mitochondrial import protein Pam17. The
presequence translocase-associated motor (PAM) drives
the completion of preprotein translocation into the
mitochondrial matrix. The Pam17 subunit is required for
formation of a stable complex between cochaperones Pam16
and Pam18 and promotes the association of Pam16-Pam18
with the presequence translocase. Mitochondria lacking
Pam17 are selectively impaired in the import of matrix
proteins.
Length = 174
Score = 28.1 bits (63), Expect = 8.1
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 362 AGVFGAMIGAYVGLT--SVILVD-----LLGLDRLTNAFGLLLLFQGIASLVGPPIAGFL 414
+ VF A+ GA+ GL S + +D ++GLD + + L+GP I +
Sbjct: 44 SSVFTALGGAFAGLAYLSTLEIDSPTQQIMGLDPFMVLGLATIACGALGWLLGPFIGNAV 103
Query: 415 YDSTLSYSPAFFLAGGAIFVSGVMLF-VIPSLQSY 448
+ F F+ + V PS QS+
Sbjct: 104 FRLLNRSQLKQFAVKEKEFLERIKKNRVDPSSQSF 138
>gnl|CDD|183658 PRK12658, PRK12658, putative monovalent cation/H+ antiporter
subunit C; Reviewed.
Length = 125
Score = 27.3 bits (61), Expect = 9.1
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 358 LAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPI 410
AI GVF A Y+ L+ I+ L GL L NA LL+ G + PP+
Sbjct: 5 FAILVGVFFA-AAIYLMLSRHIIRILFGLALLGNAVNLLIFTAGRLTREVPPL 56
>gnl|CDD|183487 PRK12382, PRK12382, putative transporter; Provisional.
Length = 392
Score = 28.5 bits (64), Expect = 9.2
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 392 AFGLLLLFQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVSGVMLFVIP 443
A G FQ IA V P+AG L S Y P+ FLAG V G+++ ++
Sbjct: 339 ALGGYAAFQDIAYGVSGPLAGMLATS-FGY-PSVFLAGAISAVLGIIVTILS 388
>gnl|CDD|185516 PTZ00215, PTZ00215, ribose 5-phosphate isomerase; Provisional.
Length = 151
Score = 27.7 bits (62), Expect = 9.3
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 114 TGIAVCGSGLGTIIFA 129
TGI VCGSG+G I A
Sbjct: 64 TGILVCGSGIGISIAA 79
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 28.5 bits (64), Expect = 9.4
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 243 LNLSDDTKQTLREMLD-MELLRDPIFILFTISNIFTSIGFNVPYVYIVKLAEQRGVTRSN 301
+NL+ +K +++ + L + +L + + G N I L E+R + R
Sbjct: 374 INLTFVSKADAALLIEHLIFLESRLGLLLGLPSKPVQAGSNDDLGEIEALIEERSIARKE 433
Query: 302 A 302
Sbjct: 434 K 434
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.141 0.414
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,575,691
Number of extensions: 2385285
Number of successful extensions: 4143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4060
Number of HSP's successfully gapped: 281
Length of query: 461
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 361
Effective length of database: 6,502,202
Effective search space: 2347294922
Effective search space used: 2347294922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)