RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15069
(461 letters)
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 62.8 bits (153), Expect = 8e-11
Identities = 41/229 (17%), Positives = 75/229 (32%), Gaps = 15/229 (6%)
Query: 225 DSKATVPESESTEDKTTCLNLSDDTKQTLREMLDMELLRDPIFILFTISNIF---TSIGF 281
S P E D N + + T +++ +L + + I+N+F G
Sbjct: 212 QSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGI 271
Query: 282 N--VPYVYIVKLAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCL 339
P Y L E + +S + A + ++ G++SD+ G
Sbjct: 272 LDWSP-TY---LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVF 326
Query: 340 AICGAATVICAFCYNYVE----LAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGL 395
+ + N I V G +I V L + ++L A G
Sbjct: 327 FMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGF 386
Query: 396 LLLFQGI-ASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVSGVMLFVIP 443
LF + S+ I G+ D + GG+I +++ V+
Sbjct: 387 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 435
Score = 46.2 bits (110), Expect = 2e-05
Identities = 33/163 (20%), Positives = 59/163 (36%), Gaps = 12/163 (7%)
Query: 25 TSWIASI--LVGV--TLCSGPISSAFVNKYGCRNVTICGAILGSACLAVSVFAKN----V 76
+SW + G+ TL G +S ++ A + +
Sbjct: 290 SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD 349
Query: 77 ITLCITIGFGTGLGFGLIYLPAIVSVTCYFERLRSLATGIAVCGSGLGTIIFAPIID-YT 135
+ I IGF LI L A+ ++ A G LG + A I YT
Sbjct: 350 MICMIVIGFLIYGPVMLIGLHALELAP---KKAAGTAAGFTGLFGYLGGSVAASAIVGYT 406
Query: 136 VREYGWKITLLVLSVTVLSAVLFGILLRPLEEQPVEEPVEDGA 178
V +GW +V+ + AV+ I++ E++ E+ +++
Sbjct: 407 VDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELV 449
Score = 36.9 bits (86), Expect = 0.011
Identities = 23/140 (16%), Positives = 52/140 (37%), Gaps = 6/140 (4%)
Query: 42 ISSAFVNKYGCRNVTICGAILGSAC---LAVSVFAKNVITLCITIGFGTGLGFGLIYLPA 98
I + ++ R G IL +A + +A + I + + F G G+ + P
Sbjct: 81 IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 140
Query: 99 IVSVTCYF-ERLRSLATGIAVCGSGLGTIIFAPIIDYTVRE-YGWKITLLVLSV-TVLSA 155
++ ++ ++ R + C +G I + + W L + + +L A
Sbjct: 141 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 200
Query: 156 VLFGILLRPLEEQPVEEPVE 175
+ ++R + P+E
Sbjct: 201 LFAFAMMRDTPQSCGLPPIE 220
Score = 33.9 bits (78), Expect = 0.12
Identities = 20/151 (13%), Positives = 44/151 (29%), Gaps = 6/151 (3%)
Query: 296 GVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGAATVICAFCY-- 353
G +R + +S + A S+ I+G +SDR N L + A + F
Sbjct: 58 GFSRGDLGFALSGISIAYGFSKFIMGSVSDR--SNPRVFLPAGLILAAAVMLFMGFVPWA 115
Query: 354 --NYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPIA 411
+ + + + G G +V + + + P +
Sbjct: 116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175
Query: 412 GFLYDSTLSYSPAFFLAGGAIFVSGVMLFVI 442
+ A ++ + + F +
Sbjct: 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAM 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 5e-07
Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 68/213 (31%)
Query: 133 DYTVREYGWKITLLVLSVTVLSAVLFGIL----LR----------PLEEQPVEEPVEDGA 178
++ YG+ I +V++ V + FG +R ++ + E +
Sbjct: 1651 NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 179 LPHLRIIIFEVKPK---------QRALTAVSTSIWQ--------PSTAI----STG---- 213
H F K Q ALT + + ++ P+ A S G
Sbjct: 1711 NEHSTSYTFR-SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA 1769
Query: 214 ---PTEVISTQAQID--------SKATVPESESTEDKTTCLNLSDD------TKQTLREM 256
+V+S ++ ++ + VP E + ++ +++ L+ +
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 257 LDMELLRDPIFILFTISNIFTSIGFNVP---YV 286
++ + + +++ I N +NV YV
Sbjct: 1830 VE-RVGKRTGWLV-EIVN------YNVENQQYV 1854
Score = 44.3 bits (104), Expect = 8e-05
Identities = 62/384 (16%), Positives = 113/384 (29%), Gaps = 119/384 (30%)
Query: 9 ILFIEFTKVFQEGDGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTI--CGAILGSAC 66
+ EF + EG+ + + A +L N R + SA
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA- 144
Query: 67 LAVSVFAKNVITLCITIGFGTGLGFGLIYLPAIVSVTCYFERLRSLATGIAVCGSGLGTI 126
L +V N + I FG G G + YFE LR L
Sbjct: 145 LFRAVGEGNAQL--VAI-FG---GQG--------NTDDYFEELRDLYQ------------ 178
Query: 127 IFAPIIDYTVREYGWKITLLVLSVTVLSA-VLF--GI-----LLRPLEEQPVEE-----P 173
+ ++ ++ TL L T L A +F G+ L P P ++ P
Sbjct: 179 TYHVLVGDLIKFSA--ETLSELIRTTLDAEKVFTQGLNILEWLENP-SNTPDKDYLLSIP 235
Query: 174 VEDGALPHLRIII-------FEVKPKQRALT-AVSTSIWQPSTAISTGPTEVISTQAQID 225
+ + P +I + V K T S + +T S G +++
Sbjct: 236 I---SCP----LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG---LVT------ 279
Query: 226 SKATVPESESTEDKTTCLNLSDDTKQTLREMLDMELLRDPIFILFTISNIFTSIGF---- 281
A + + + ++ + +LF IG
Sbjct: 280 --AVAIAETDSWE-----SFFVSVRKAIT-------------VLF-------FIGVRCYE 312
Query: 282 NVPYVY----IVKLAEQRGVTRSNASSLISIVGAANMVSRV-ILGYISDR----PCVNRL 332
P I++ + + S ++SI +++ + Y++ P ++
Sbjct: 313 AYPNTSLPPSILEDSLENNEGV--PSPMLSISN----LTQEQVQDYVNKTNSHLPAGKQV 366
Query: 333 YI--YNG--CLAICGAATVICAFC 352
I NG L + G +
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLN 390
Score = 39.6 bits (92), Expect = 0.003
Identities = 56/348 (16%), Positives = 110/348 (31%), Gaps = 93/348 (26%)
Query: 3 VTYSF-GILFIEFT--KVFQEGDGVT-SWIASILVGVTLCSGPISSAFVNKYGCRNVTIC 58
+ S I I+ V + G T + S L G T S + +A
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA------------- 280
Query: 59 GAILGSACLAVSV----FAKNVITLCITIGFGTGL----GFGLIYLPAIVSVTCYFERLR 110
+A + F +V IT+ F G+ + LP +
Sbjct: 281 ------VAIAETDSWESFFVSVRK-AITVLFFIGVRCYEAYPNTSLPPSILED------- 326
Query: 111 SLATG-------IAVCGSGLGTIIFAPIIDYTVREYGWKITLLVLSVT------VLS--- 154
SL +++ + ++ T + + +S+ V+S
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQ--DYVNKT-NSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 155 AVLFGILLRPLEEQPVEEPVEDGALPHL-RIIIFEVKPKQRALTAVS----TSIWQPSTA 209
L+G L L + ++ +P R + F R L V+ + + P A
Sbjct: 384 QSLYG-LNLTLRKAKAPSGLDQSRIPFSERKLKFSN----RFLP-VASPFHSHLLVP--A 435
Query: 210 ISTGPTEVISTQAQIDSKA-TVPESESTEDKTTCLNLSDDTKQTLREMLDMELLRDPIF- 267
+++ ++K +P T D + +L + ++D ++R P+
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIP-VYDTFDGS---DLRVLSGSISERIVDC-IIRLPVKW 490
Query: 268 ---ILFTISNI--F-----TSIGFNVPYVYIVKLAEQRGVTRSNASSL 305
F ++I F + +G V + + GV A +L
Sbjct: 491 ETTTQFKATHILDFGPGGASGLG-----VLTHRNKDGTGVRVIVAGTL 533
Score = 30.4 bits (68), Expect = 1.7
Identities = 21/91 (23%), Positives = 28/91 (30%), Gaps = 25/91 (27%)
Query: 354 NYVELAIYAGVFGAMIG-----AYVGLTSVILVDLLGLDRLTNAFGLL------LLFQGI 402
N V L I+ FG G Y + +VD G + F + F+
Sbjct: 1668 NPVNLTIH---FGGEKGKRIRENYSAMIFETIVD--GKLKTEKIFKEINEHSTSYTFRS- 1721
Query: 403 ASLVGPPIAGFLYDSTLSYSPAFFLAGGAIF 433
G L +T PA L A F
Sbjct: 1722 ------E-KGLL-SATQFTQPALTLMEKAAF 1744
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 46.8 bits (111), Expect = 8e-06
Identities = 29/209 (13%), Positives = 72/209 (34%), Gaps = 8/209 (3%)
Query: 259 MELLRDPIFILFTISN--IFTSIGFNVPYVYIVKLAEQRGVTRSNASSLISIVGAANMVS 316
M L++ F +F + F +G P+ I L + +++S+ + + + +++
Sbjct: 1 MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIW-LHDINHISKSDTGIIFAAISLFSLLF 59
Query: 317 RVILGYISDR-PCVNRLYIYNGCLAICGAATVICAFCYNYVELAIYAGVFGAMIGAYVGL 375
+ + G +SD+ L + + A I F + + G + +
Sbjct: 60 QPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFN 119
Query: 376 TSVILVDLLGLDRLTN---AFGLLLLFQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGAI 432
V+ FG +F + +G I G ++ + + +G A+
Sbjct: 120 AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCAL 178
Query: 433 FVSGVMLFVIPSLQSYLLKRKEKKLSSES 461
++ ++ F S + +
Sbjct: 179 ILAVLLFFAKTDAPSSATVANAVGANHSA 207
Score = 42.2 bits (99), Expect = 3e-04
Identities = 22/189 (11%), Positives = 57/189 (30%), Gaps = 8/189 (4%)
Query: 259 MELLRDPIFILFTISNIFTSIGFNVP----YVYIVKLAEQRGVTRSNASSLISIVGAANM 314
+EL R P ++ I S ++V + + ++ N
Sbjct: 214 LELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNA 273
Query: 315 VSRVILGYISDRPCVNRLYIYNGCLAICGAATVICAFCYNYVELAIYAGVFGAMIGAYVG 374
I +R + I + +F + +E+ I + + +
Sbjct: 274 SIMFFAPLIINRIGGKNALLL--AGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLV 331
Query: 375 LTSVILVDLLGLDRLTNAFGLL-LLFQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGAIF 433
+ + + + F+ +A + +AG +Y+S + + A+ + G
Sbjct: 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-IGFQGAYLVLGLVAL 390
Query: 434 VSGVMLFVI 442
++
Sbjct: 391 GFTLISVFT 399
Score = 41.5 bits (97), Expect = 4e-04
Identities = 25/164 (15%), Positives = 54/164 (32%), Gaps = 6/164 (3%)
Query: 1 DGVTYSFGILFIEFTKVFQEGDGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGA 60
D +F F F ++G V ++ ++ + + +N+ G +N +
Sbjct: 240 DQQFANF---FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAG 296
Query: 61 ILGSACLAVSVFAKNVITLCITIGFGTGLGFGLIYLPAIVSVTCYF-ERLRSLATGI-AV 118
+ S + S FA + + + I + + +T F R + +
Sbjct: 297 TIMSVRIIGSSFATSALEVVILKTL-HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFC 355
Query: 119 CGSGLGTIIFAPIIDYTVREYGWKITLLVLSVTVLSAVLFGILL 162
L I + + G++ LVL + L L +
Sbjct: 356 FFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 35.3 bits (82), Expect = 0.036
Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 2/153 (1%)
Query: 291 LAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGAATVICA 350
+A V S++ VS++ G ISDR V R + ++I AT++
Sbjct: 26 MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR--VGRRPVILVGMSIFMLATLVAV 83
Query: 351 FCYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQGIASLVGPPI 410
+ L + + G G + + DL +L +A LL + ++ L+ P I
Sbjct: 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI 143
Query: 411 AGFLYDSTLSYSPAFFLAGGAIFVSGVMLFVIP 443
G L + FL V+ M +P
Sbjct: 144 GGLLDTMWNWRACYLFLLVLCAGVTFSMARWMP 176
Score = 28.4 bits (64), Expect = 4.8
Identities = 24/189 (12%), Positives = 49/189 (25%), Gaps = 16/189 (8%)
Query: 260 ELLRDPIFILFTISNIFTSIGF-----NVPYVYIVKLAEQRGVTRSNASSLISIVGAANM 314
L + F + + I G + G++ S L + A
Sbjct: 194 TLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMG----AVLGLSSMTVSILFILPIPAAF 249
Query: 315 VSRVILGYISDRPCVNRLYIYNGCLAICGAATVICAFCYNYVELAIYAG---VFGAMIGA 371
G + R + L + + + + + + +F G
Sbjct: 250 FGAWFAGRPNKR--FSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGM 307
Query: 372 YVGLTSVILVDLLGLDRLTNAFGLLLLFQ-GIASLVGPPIAGFLYDSTLSYSPAFFLAGG 430
L + ++ T A L+ Q + ++ A S L G
Sbjct: 308 LFPLATSGAMEPFPFLAGT-AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGL 366
Query: 431 AIFVSGVML 439
I + + L
Sbjct: 367 LIVLCWLPL 375
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 31.1 bits (70), Expect = 0.79
Identities = 21/170 (12%), Positives = 56/170 (32%), Gaps = 9/170 (5%)
Query: 261 LLRDPIFILFTISNIFTSIGFNVPYVYIVKLAEQR--GVTRSNASSLISIVGAANMVSRV 318
L R + ++ + Y+++ A + G+T A++ ++ + R
Sbjct: 254 LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRF 313
Query: 319 ILGYISDRPCVNRLYIYNGCLAICGAATVICAFCYNYVELAIYAGVFGAMI-GAYVGLTS 377
++ R +++ +A+ A + + F ++ L
Sbjct: 314 TGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLG- 372
Query: 378 VILVDLLGLDRLTNAFGLLLLFQGIASLVGPPIAGFLYDSTLSYSPAFFL 427
+ L + T ++ I + P+ GF+ D+ + A +
Sbjct: 373 -----IKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELI 417
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide
transport, major facilitator SUPE transporter, MFS;
3.30A {Streptococcus thermophilus}
Length = 491
Score = 31.2 bits (71), Expect = 0.82
Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 7/182 (3%)
Query: 283 VPYVYIVKLAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVNR-LYIYNGCLAI 341
+ Y++ + +TR+ A+S+++I + +S I G+++DR R + G L +
Sbjct: 37 LYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM 96
Query: 342 CGAATVICAFCYNYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLD--RLTNAFGLLLLF 399
G + F + + +I + G G S ++ L R F + +
Sbjct: 97 LGHIVLALPFGASALFGSIILIIIGT--GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFG 154
Query: 400 QGIASLVGPPIAGFLYDSTLSYSPAFFLAG-GAIFVSGVMLFVIPSLQSYLLKRKEKKLS 458
+ + + P I G + Y AF LA G V F R L+
Sbjct: 155 INLGAFIAPLIVGAAQE-AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLA 213
Query: 459 SE 460
E
Sbjct: 214 PE 215
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm,
transcription regulation, binding, transcription
regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB:
3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Length = 151
Score = 29.4 bits (66), Expect = 1.5
Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 14/87 (16%)
Query: 245 LSDDTKQTLREMLDMELLRDPI-----FILFTISNIFTSIGFNVPYVYIVKLAEQRGVTR 299
+D ++L I +L +S ++G ++ E++GV +
Sbjct: 15 FINDVNTLTAKLLKDLQTEYGISAEQSHVLNMLSIEALTVG---------QITEKQGVNK 65
Query: 300 SNASSLISIVGAANMVSRVILGYISDR 326
+ S + + A +V +D+
Sbjct: 66 AAVSRRVKKLLNAELVKLEKPDSNTDQ 92
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 29.6 bits (67), Expect = 2.9
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 116 IAVCGSGLGTIIFAPIIDYTVREYGWKITLLVLSVTVLSAVLFGILLR 163
I + + T II +T GWK+TL++L+++ + + GI +
Sbjct: 186 IGMFFQAMATFFGGFIIGFT---RGWKLTLVILAISPVLGLSAGIWAK 230
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside
hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Length = 437
Score = 28.2 bits (62), Expect = 5.9
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 198 AVSTSIWQPSTAISTGPTEVISTQAQIDSKATVPESESTEDKTTCLNLSDDTKQTL 253
+++ S A S + IS + + +P + +D L L D+ L
Sbjct: 371 SLNYSWSHYGEADSYSGSVSISNSSSASANVQIPSNAGGKDIHILLTLRDNGSPNL 426
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.141 0.414
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,895,352
Number of extensions: 429866
Number of successful extensions: 1102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1086
Number of HSP's successfully gapped: 41
Length of query: 461
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 364
Effective length of database: 3,993,456
Effective search space: 1453617984
Effective search space used: 1453617984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.9 bits)