RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15069
(461 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 55.5 bits (132), Expect = 7e-09
Identities = 38/241 (15%), Positives = 74/241 (30%), Gaps = 10/241 (4%)
Query: 225 DSKATVPESESTEDKTTCLNLSDDTKQTLREMLDMELLRDPIFILFTISNIFTSIGFNVP 284
S P E D N + + T +++ +L + + I+N+F +
Sbjct: 209 QSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGI 268
Query: 285 YVYIVKLAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNGCLAICGA 344
+ ++ + SS + + +L G +
Sbjct: 269 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 328
Query: 345 ATVICAFCY----NYVELAIYAGVFGAMIGAYVGLTSVILVDLLGLDRLTNAFGLLLLFQ 400
+ N I V G +I V L + ++L A G LF
Sbjct: 329 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 388
Query: 401 GI-ASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVSGVMLFVIPSLQSYLLKRKEKKLSS 459
+ S+ I G+ D + GG+I +++ V+ KR+ ++L
Sbjct: 389 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG-----EKRRHEQLLQ 443
Query: 460 E 460
E
Sbjct: 444 E 444
Score = 42.0 bits (97), Expect = 1e-04
Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 2/155 (1%)
Query: 24 VTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAILGSACLAVSVFAKNVITLCITI 83
+ TL G +S ++ A + + T+ +
Sbjct: 290 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 349
Query: 84 GFGTGLGFGLIYLPAIVSVTCYF-ERLRSLATGIAVCGSGLGTIIFAPII-DYTVREYGW 141
G + + ++ A G LG + A I YTV +GW
Sbjct: 350 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 409
Query: 142 KITLLVLSVTVLSAVLFGILLRPLEEQPVEEPVED 176
+V+ + AV+ I++ E++ E+ +++
Sbjct: 410 DGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444
Score = 39.3 bits (90), Expect = 8e-04
Identities = 25/182 (13%), Positives = 53/182 (29%), Gaps = 7/182 (3%)
Query: 266 IFILFTISNIFTSIGFNVPYVYIVKLAEQRGVTRSNASSLISIVGAANMVSRVILGYISD 325
IF+ + + + L EQ G +R + +S + A S+ I+G +SD
Sbjct: 26 IFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSD 84
Query: 326 RPCVNRLYIYNGCLAICGAATVICAFCY----NYVELAIYAGVFGAMIGAYVGLTSVILV 381
R N L + A + F + + + + G G +V
Sbjct: 85 R--SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 142
Query: 382 DLLGLDRLTNAFGLLLLFQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGAIFVSGVMLFV 441
+ + + P + + A ++ + + F
Sbjct: 143 HWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 202
Query: 442 IP 443
+
Sbjct: 203 MM 204
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 46.3 bits (108), Expect = 5e-06
Identities = 26/208 (12%), Positives = 62/208 (29%), Gaps = 3/208 (1%)
Query: 250 KQTLREMLDMELLRDPIFILFTISNIFTSIGFNVPYVYIVKLAEQRGVTRSNASSLISIV 309
L +EL R P ++ I S ++V T + + V
Sbjct: 205 HSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYV 264
Query: 310 GAANMVSRVILGYISDRPCVNRLYIYNGCL--AICGAATVICAFCYNYVELAIYAGVFGA 367
+ + + + L I + +F + +E+ I +
Sbjct: 265 TTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMF 324
Query: 368 MIGAYVGLTSVILVDLLGLDRLTNAFGLLL-LFQGIASLVGPPIAGFLYDSTLSYSPAFF 426
+ + + + + + F+ +A + +AG +Y+S
Sbjct: 325 EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV 384
Query: 427 LAGGAIFVSGVMLFVIPSLQSYLLKRKE 454
L A+ + + +F + L R++
Sbjct: 385 LGLVALGFTLISVFTLSGPGPLSLLRRQ 412
Score = 45.9 bits (107), Expect = 6e-06
Identities = 25/208 (12%), Positives = 61/208 (29%), Gaps = 9/208 (4%)
Query: 259 MELLRDPIFILFTISNIFTSIGFNVPYVYI-VKLAEQRGVTRSNASSLISIVGAANMVSR 317
M L++ F +F + F + + + L + +++S+ + + + +++ +
Sbjct: 1 MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQ 60
Query: 318 VILGYISDRPCVNRLYIYNGCLAICGAATVICAFCYNYVELAIYAGVFGAMIGAYVGLTS 377
+ G +SD+ + + L V + G Y+G
Sbjct: 61 PLFGLLSDK--LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118
Query: 378 VILVDLL------GLDRLTNAFGLLLLFQGIASLVGPPIAGFLYDSTLSYSPAFFLAGGA 431
+ R FG +F + +G I G ++ +
Sbjct: 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCAL 178
Query: 432 IFVSGVMLFVIPSLQSYLLKRKEKKLSS 459
I + + S + S
Sbjct: 179 ILAVLLFFAKTDAPSSATVANAVGANHS 206
Score = 35.5 bits (80), Expect = 0.011
Identities = 14/113 (12%), Positives = 33/113 (29%)
Query: 50 YGCRNVTICGAILGSACLAVSVFAKNVITLCITIGFGTGLGFGLIYLPAIVSVTCYFERL 109
G + + G I+ + S + + + + F L+ ++
Sbjct: 287 GGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFS 346
Query: 110 RSLATGIAVCGSGLGTIIFAPIIDYTVREYGWKITLLVLSVTVLSAVLFGILL 162
++ L I + + G++ LVL + L L +
Sbjct: 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399
Score = 35.1 bits (79), Expect = 0.016
Identities = 43/371 (11%), Positives = 85/371 (22%), Gaps = 29/371 (7%)
Query: 7 FGILFIEFTKVFQEGDGVTSWIASILVGVTLCSGPISSAFVNKYGCRNVTICGAILGSAC 66
F I + T I + + +L P+ +K G R +
Sbjct: 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86
Query: 67 LAVSVFAKNVITLCITIGFGTGLGFGLIYLPAIVSVTCY------FERLRSLATGIAVCG 120
A L I G+ +G + R + G A
Sbjct: 87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMF 146
Query: 121 SGLGTIIFAPIIDYTVREYGWKITLLVLSVTVLSAVLFGILLRPLEEQPVEEPVEDGALP 180
+G + A I+ + L ++ AVL
Sbjct: 147 GCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHS 206
Query: 181 HLRIIIFEVKPKQRALTAVSTSIWQPSTAISTGPTEVISTQAQIDSKATVPESESTEDKT 240
+ + +Q L +S + S + + + T
Sbjct: 207 AFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTT 266
Query: 241 TCLNLSDDTKQTLREMLDMELLRDPI-----------------------FILFTISNIFT 277
L+ +++ ++ + IL T+
Sbjct: 267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEV 326
Query: 278 SIGFNVPYVYIVKLAEQRGVTRSNASSLISIVGAANMVSRVILGYISDRPCVNRLYIYNG 337
+ YI E R A + V+ G + + Y+ G
Sbjct: 327 PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386
Query: 338 CLAICGAATVI 348
+A+ +
Sbjct: 387 LVALGFTLISV 397
>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 143
Score = 28.9 bits (64), Expect = 0.72
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 250 KQTLREMLDMELLRDPIFILFTISNIFTSIGFNVPYVYIVKLAEQRGVTRSNASS 304
Q LR D E L D + I I++I GF +V++++ V S
Sbjct: 3 AQQLRAESDFEQLPDDVAISANIADIEEKRGFTSHFVFVIE------VKTKGGSK 51
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux
transporter AcrB transmembrane domain {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 27.0 bits (59), Expect = 4.2
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 424 AFFLAGGAIFVSGVMLFVIPSLQSYLLKRKEKK 456
+ GG + + + +F +P + +R +K
Sbjct: 190 GTGVMGGMVTATVLAIFFVPVFFVVVRRRFSRK 222
>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia
coli [TaxId: 562]}
Length = 242
Score = 26.5 bits (58), Expect = 6.3
Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 11/126 (8%)
Query: 255 EMLDMELLRDPIFILF---TISNIFTSIGFNVPYV-YIVKLAEQRGVTRSNASSLISIVG 310
EML + + P F + T G +V ++ A +R SL
Sbjct: 77 EMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDAD 136
Query: 311 AANMVSRVILGYISDRPCVNRLYIYNGCLAICGAATVICAFCYNYVELAIYAGVFGAMIG 370
+ + + I+ GC A + A +A G +
Sbjct: 137 EEQI-------KAAAEVGAPFIEIHTGCYADAKTDAEQAQELARIAKAATFAASLGLKVN 189
Query: 371 AYVGLT 376
A GLT
Sbjct: 190 AGHGLT 195
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.141 0.414
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,633,047
Number of extensions: 75301
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 19
Length of query: 461
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 373
Effective length of database: 1,199,356
Effective search space: 447359788
Effective search space used: 447359788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.4 bits)