Query psy15070
Match_columns 308
No_of_seqs 207 out of 700
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 19:40:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04300 FBA: F-box associated 100.0 1.6E-71 3.5E-76 493.9 18.1 180 79-286 1-183 (184)
2 PF12937 F-box-like: F-box-lik 99.2 1.5E-11 3.2E-16 85.6 3.6 45 17-61 1-46 (47)
3 PF00646 F-box: F-box domain; 98.9 9.7E-10 2.1E-14 76.2 2.0 45 16-60 2-47 (48)
4 smart00256 FBOX A Receptor for 98.7 5.9E-09 1.3E-13 69.2 2.5 37 20-56 1-37 (41)
5 KOG2997|consensus 97.8 9.7E-06 2.1E-10 77.7 1.9 75 16-92 106-192 (366)
6 KOG0281|consensus 97.6 2.9E-05 6.4E-10 75.3 2.8 49 17-65 75-128 (499)
7 KOG2120|consensus 97.4 9.8E-05 2.1E-09 71.0 2.5 41 16-56 97-137 (419)
8 KOG0274|consensus 96.6 0.0014 3.1E-08 67.5 3.3 77 9-85 100-184 (537)
9 PLN03215 ascorbic acid mannose 96.3 0.0024 5.2E-08 63.1 2.7 39 15-53 2-41 (373)
10 KOG4341|consensus 95.4 0.0078 1.7E-07 60.2 2.0 39 17-55 72-110 (483)
11 KOG3926|consensus 95.2 0.022 4.8E-07 54.0 4.0 82 6-88 191-279 (332)
12 PLN03089 hypothetical protein; 90.5 15 0.00033 36.6 15.8 155 90-285 190-364 (373)
13 PF13013 F-box-like_2: F-box-l 86.0 0.67 1.4E-05 38.3 2.7 39 7-45 12-50 (109)
14 PF06881 Elongin_A: RNA polyme 84.0 2.3 5E-05 34.6 5.0 68 16-85 3-71 (109)
15 PF04862 DUF642: Protein of un 66.3 87 0.0019 27.1 10.9 44 237-284 116-159 (159)
16 PF02018 CBM_4_9: Carbohydrate 53.0 1.1E+02 0.0024 23.9 14.3 66 193-264 61-126 (131)
17 PF04620 FlaA: Flagellar filam 50.4 1.1E+02 0.0024 28.3 8.6 84 197-300 109-192 (217)
18 KOG2502|consensus 49.9 9.1 0.0002 37.7 1.6 38 18-55 46-91 (355)
19 PHA00692 hypothetical protein 49.4 10 0.00022 28.1 1.4 14 244-257 30-43 (74)
20 KOG4408|consensus 40.0 7.4 0.00016 38.3 -0.7 50 14-63 5-55 (386)
21 PF09372 PRANC: PRANC domain; 30.3 39 0.00083 26.6 2.1 24 16-39 71-94 (97)
22 PF10370 DUF2437: Domain of un 27.6 42 0.0009 23.5 1.6 24 255-285 1-24 (50)
23 PF12100 DUF3576: Domain of un 24.7 1E+02 0.0022 25.3 3.6 30 193-222 27-56 (103)
24 PF10313 DUF2415: Uncharacteri 23.3 38 0.00082 23.4 0.7 23 254-276 2-26 (43)
25 PF14751 DUF4474: Domain of un 21.7 68 0.0015 30.2 2.3 30 257-287 51-82 (241)
26 PF07148 MalM: Maltose operon 21.4 4.3E+02 0.0093 22.4 7.0 68 192-266 16-92 (135)
No 1
>PF04300 FBA: F-box associated region; InterPro: IPR007397 Proteins containing this domain are associated with F-box domains (IPR001810 from INTERPRO), hence the name FBA. This domain is probably involved in binding other proteins that will be targeted for ubiquitination. Q9UK22 from SWISSPROT is involved in binding to N-glycosylated proteins.; GO: 0030163 protein catabolic process; PDB: 1UMI_A 2RJ2_A 2E33_A 1UMH_A 2E32_A 2E31_A.
Probab=100.00 E-value=1.6e-71 Score=493.88 Aligned_cols=180 Identities=43% Similarity=0.928 Sum_probs=140.4
Q ss_pred hhhhhhhcCCCCcccccccCCCCCCCCcceeeEeecCCCceEeecCCCCCCCCCCCCCCCCCCCCceeeeecccccCCCC
Q psy15070 79 WTTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDSKKATSST 158 (308)
Q Consensus 79 Wk~~Y~~~~~k~p~gRNLikNp~~ed~~~~W~~~~~gGdgw~vE~~p~g~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 158 (308)
|+.||++ ++ ++||||+||+|+++|.+|++. ||||+|++|.+|.+++ .++|+..+
T Consensus 1 W~~fy~~-~p---~~RNLlkNp~ge~~~~~W~v~-ngGd~w~vE~~p~~~~---~~~p~~~v------------------ 54 (184)
T PF04300_consen 1 WKVFYFL-RP---FGRNLLKNPSGEEGFQGWEVE-NGGDGWRVEEPPGDCG---GPFPDPEV------------------ 54 (184)
T ss_dssp HHHHHHH-HH---H-S--SSSSSSTTTTTT-EEE-E-TT--EEEESSBTTB------TTTT-------------------
T ss_pred Ccchhee-cc---ccCccCcCCCccccCccceec-CCCCCEEEeeCCcccC---CCCCCchh------------------
Confidence 8999998 55 999999999999999999965 9999999999987663 35676566
Q ss_pred CcceeeeeccceeeeEEEEecccCCCCHHHHhhcCCceEEeeeeccccCCCceEEEEEEEeccCcceeeee-cccccc--
Q psy15070 159 NTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYH-IHHTDI-- 235 (308)
Q Consensus 159 g~~~cf~tSy~wc~k~Q~IDL~~eG~~~~lLD~~~P~I~vsdwy~~r~dc~~~Y~l~V~Ll~~~~~vi~~f-~~~~~~-- 235 (308)
++||||||+||+|+|.|||+|||||++|||.+||+|+|||||++|+||+|+|+|+|+|||++++||++| +.+..+
T Consensus 55 --~~cFvtSy~wc~K~Q~IDL~~eG~~~~lLD~~qP~I~isdWy~~r~dc~~~Y~l~V~Lld~~~~vi~~f~~~~~~~~~ 132 (184)
T PF04300_consen 55 --QKCFVTSYRWCSKSQVIDLQAEGYWPELLDSFQPEITISDWYAGRFDCGCVYELHVQLLDANKNVIAEFKPGPVPIPQ 132 (184)
T ss_dssp ---EEEEE-SS-EEEEEEEETTTTT--HHHHHHT--EEEEEEEEE--SSS-EEEEEEEEEEETTTEEEEEEEEESEEE-T
T ss_pred --ccccccccccEEEEEEEehhhccCCHHHhcCCCCCEEEEEEEeccCCcCcEEEEEEEECcCCCcEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 666665
Q ss_pred CCCCceeEEEEEEecCCCCeEEEEEEEeeeeccccCccCCCeeeceEEEEE
Q psy15070 236 GENFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLI 286 (308)
Q Consensus 236 ~~~~~W~qvsh~F~~Y~~GVR~V~f~h~Gkd~~fw~G~yG~kvt~ssV~v~ 286 (308)
|+++.|+||||||++||||||||+|+|+|||++||+||||+|||||||+|+
T Consensus 133 ~~~~~W~qvsh~F~~Yg~GVR~I~f~h~GkD~~fw~G~yG~rvt~ssV~V~ 183 (184)
T PF04300_consen 133 WTDNPWKQVSHTFSNYGPGVRFIRFEHGGKDTQFWAGHYGSRVTNSSVIVR 183 (184)
T ss_dssp --T--EEEEEEEE-S--TTEEEEEEEEEEEESS--SSS-SEEEEEEEEEEE
T ss_pred cCCCCcEEEEEEEeCCCCCCEEEEEEEeeeccccCCcccCCeEeceEEEEe
Confidence 899999999999999999999999999999999999999999999999996
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.19 E-value=1.5e-11 Score=85.61 Aligned_cols=45 Identities=27% Similarity=0.549 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHHh
Q psy15070 17 GVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERAI 61 (308)
Q Consensus 17 ~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c~ 61 (308)
+..||+||+.+||++||++||++|++|||+|+.++.++.+ ++.|.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 4689999999999999999999999999999999987766 77664
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.86 E-value=9.7e-10 Score=76.16 Aligned_cols=45 Identities=33% Similarity=0.533 Sum_probs=37.9
Q ss_pred cCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHH
Q psy15070 16 NGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERA 60 (308)
Q Consensus 16 ~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c 60 (308)
++.+||+|++.+||++|++.++++|++|||+|+++++++.+ ..++
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 35679999999999999999999999999999999999887 6655
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.73 E-value=5.9e-09 Score=69.22 Aligned_cols=37 Identities=41% Similarity=0.810 Sum_probs=35.6
Q ss_pred CCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH
Q psy15070 20 FPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL 56 (308)
Q Consensus 20 LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~ 56 (308)
||+|++.+||++|+++++++|++|||+|+.+++++.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~ 37 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDF 37 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhh
Confidence 7999999999999999999999999999999998876
No 5
>KOG2997|consensus
Probab=97.78 E-value=9.7e-06 Score=77.72 Aligned_cols=75 Identities=23% Similarity=0.388 Sum_probs=58.3
Q ss_pred cCCCCCHHHHHHHhccC-----ChhhhhhhhccchhhHHHhhhhHH-HHHHhhcCccc-CCC-----CcCCCCcchhhhh
Q psy15070 16 NGVYFPDEVLEVILVHM-----EIRTLLASRRVCKKWKSLIETQVL-KERAILEGFTR-GLT-----NEDKMNVEWTTWY 83 (308)
Q Consensus 16 ~~~~LP~ell~~Ils~L-----p~~~L~~crlVCk~W~~li~~~~~-~~~c~r~g~~~-~l~-----~~~~~~~dWk~~Y 83 (308)
.+..||+|||.+||..+ +.++|.+|++|||.|+..+.+|.+ |..|.+. |+. +.- .....-.+|+.++
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~Kv-W~~s~~~ln~~~~~sky~~SWR~Mf 184 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKV-WQRSCIKLNPKILQSKYYTSWREMF 184 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHH-HHHhhhccchhhhhhHHHhHHHHHH
Confidence 46889999999999754 559999999999999999999999 9999987 642 110 0123356899999
Q ss_pred hhcCCCCcc
Q psy15070 84 LMLSPNSLF 92 (308)
Q Consensus 84 ~~~~~k~p~ 92 (308)
.. ++|..|
T Consensus 185 l~-RpRvrF 192 (366)
T KOG2997|consen 185 LE-RPRVRF 192 (366)
T ss_pred hh-Ccceee
Confidence 98 665444
No 6
>KOG0281|consensus
Probab=97.64 E-value=2.9e-05 Score=75.26 Aligned_cols=49 Identities=29% Similarity=0.390 Sum_probs=44.6
Q ss_pred CCCCC----HHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHHhhcCc
Q psy15070 17 GVYFP----DEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERAILEGF 65 (308)
Q Consensus 17 ~~~LP----~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c~r~g~ 65 (308)
+..|| ++|.+.||++|++.+|+.|.+|||+|+.+++++.+ ++..++.+|
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr 128 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVR 128 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcc
Confidence 45689 99999999999999999999999999999999987 888888765
No 7
>KOG2120|consensus
Probab=97.37 E-value=9.8e-05 Score=71.00 Aligned_cols=41 Identities=29% Similarity=0.412 Sum_probs=38.1
Q ss_pred cCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH
Q psy15070 16 NGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL 56 (308)
Q Consensus 16 ~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~ 56 (308)
....|||||++.||+.|+.++|++.+.|||||+.+..+..+
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 36789999999999999999999999999999999998775
No 8
>KOG0274|consensus
Probab=96.61 E-value=0.0014 Score=67.50 Aligned_cols=77 Identities=22% Similarity=0.296 Sum_probs=57.6
Q ss_pred CCCCccccCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHHhhc-CcccCCCC---cC---CCCcchh
Q psy15070 9 PFNGSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERAILE-GFTRGLTN---ED---KMNVEWT 80 (308)
Q Consensus 9 ~~~~~~~~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c~r~-g~~~~l~~---~~---~~~~dWk 80 (308)
+.....--+..||.|+...||.+||+++|++|++||+.|+.++++... .+.|... ++.++... +. .....|+
T Consensus 100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 179 (537)
T KOG0274|consen 100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWK 179 (537)
T ss_pred ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhh
Confidence 556666678899999999999999999999999999999999998765 6666553 33332111 11 1125788
Q ss_pred hhhhh
Q psy15070 81 TWYLM 85 (308)
Q Consensus 81 ~~Y~~ 85 (308)
.+|.+
T Consensus 180 s~~~~ 184 (537)
T KOG0274|consen 180 SFYRR 184 (537)
T ss_pred hhhhh
Confidence 89876
No 9
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.32 E-value=0.0024 Score=63.05 Aligned_cols=39 Identities=23% Similarity=0.469 Sum_probs=34.5
Q ss_pred ccCCCCCHHHHHHHhccCChh-hhhhhhccchhhHHHhhh
Q psy15070 15 LNGVYFPDEVLEVILVHMEIR-TLLASRRVCKKWKSLIET 53 (308)
Q Consensus 15 ~~~~~LP~ell~~Ils~Lp~~-~L~~crlVCk~W~~li~~ 53 (308)
.+-++||+|||..|..+||.. |+++.|.||+.||+.+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 445789999999999999665 999999999999998864
No 10
>KOG4341|consensus
Probab=95.44 E-value=0.0078 Score=60.18 Aligned_cols=39 Identities=18% Similarity=0.427 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhH
Q psy15070 17 GVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQV 55 (308)
Q Consensus 17 ~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~ 55 (308)
-..||+|++.+||++||-++|++|+.||+.|+-++.|-.
T Consensus 72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 346999999999999999999999999999999987643
No 11
>KOG3926|consensus
Probab=95.15 E-value=0.022 Score=53.99 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=60.9
Q ss_pred CCCCCCCccccCCCCCHHHHHHHhccCChh-hhhhhhccchhhHHHhhhhHH-HHHHhhcCccc---C--CCCcCCCCcc
Q psy15070 6 EIDPFNGSKLNGVYFPDEVLEVILVHMEIR-TLLASRRVCKKWKSLIETQVL-KERAILEGFTR---G--LTNEDKMNVE 78 (308)
Q Consensus 6 ~~~~~~~~~~~~~~LP~ell~~Ils~Lp~~-~L~~crlVCk~W~~li~~~~~-~~~c~r~g~~~---~--l~~~~~~~~d 78 (308)
||++..-..+.+.+||.|++..|+.+|+.. ||+....|=-.-..|+++..+ ++.|+.+ |.- . +-....+..+
T Consensus 191 qi~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfH-F~erQi~~~l~l~k~~q~d 269 (332)
T KOG3926|consen 191 QITEPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFH-FNERQIHTILILSKKGQKD 269 (332)
T ss_pred cccCCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHhhhhccccchh
Confidence 455444467789999999999999999765 888888888888888887766 8888765 311 1 1124456789
Q ss_pred hhhhhhhcCC
Q psy15070 79 WTTWYLMLSP 88 (308)
Q Consensus 79 Wk~~Y~~~~~ 88 (308)
||.+|+.|.+
T Consensus 270 Wkqmyf~L~r 279 (332)
T KOG3926|consen 270 WKQMYFQLRR 279 (332)
T ss_pred HHHHHHHHHH
Confidence 9999998433
No 12
>PLN03089 hypothetical protein; Provisional
Probab=90.46 E-value=15 Score=36.60 Aligned_cols=155 Identities=16% Similarity=0.186 Sum_probs=83.8
Q ss_pred CcccccccCCCCCCCCcceeeEeecCCCceEeecCCCCCCCCCCCCCCCCCCCCcee-eeecccccCC-----CCCccee
Q psy15070 90 SLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTK-ITKDSKKATS-----STNTESC 163 (308)
Q Consensus 90 ~p~gRNLikNp~~ed~~~~W~~~~~gGdgw~vE~~p~g~~~~~~~~P~~~~~~~~~~-~~~~~~~~~~-----~~g~~~c 163 (308)
.|-.-|||+|...|++-. +..|+..|+.+ ||--. +...++ .||++ +..-..+--| |+|..--
T Consensus 190 ~p~~~Nll~NG~FE~Gp~---~~~n~~~gvll--p~~~~-~~~s~L------pgW~i~s~~~V~yids~h~~vp~G~~av 257 (373)
T PLN03089 190 RPTKDNLLKNGGFEEGPY---VFPNSSWGVLL--PPNIE-DDTSPL------PGWMIESLKAVKYIDSAHFSVPEGKRAV 257 (373)
T ss_pred CccccceeecCCcccCCc---ccCCCCceEEe--CCccc-cCCCCC------CCcEEecCccEEEEecCcccCCCCceEE
Confidence 446889999998887642 22344444433 32111 111233 47997 3322222222 7777666
Q ss_pred eeeccceeeeEEEEecccCCCCHHHHhhcCCceEEeeeeccccCCCceEEEEEEEeccCcc-----eeeee----ccccc
Q psy15070 164 FVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKK-----LLAYH----IHHTD 234 (308)
Q Consensus 164 f~tSy~wc~k~Q~IDL~~eG~~~~lLD~~~P~I~vsdwy~~r~dc~~~Y~l~V~Ll~~~~~-----vi~~f----~~~~~ 234 (308)
=+.+...+...|.|.+.. |..|.|...|-|+.+. .+.-| ...+.
T Consensus 258 eL~~g~e~aI~Q~v~T~~---------------------------G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~~~~v~ 310 (373)
T PLN03089 258 ELVSGKESAIAQVVRTVP---------------------------GKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVP 310 (373)
T ss_pred EeccCCcceEEEEEEccC---------------------------CCEEEEEEEEccCCCCCCCcEEEEEEeecccceEE
Confidence 556666677777777765 4445555544443322 12212 11111
Q ss_pred c--CCCCceeEEEEEEecCCCCeEEEEEEE---eeeeccccCccCCCeeeceEEEE
Q psy15070 235 I--GENFKWQKVENKFENYPSGVRYILFIH---EGVDSQFWQGHYGPKMTRATVFL 285 (308)
Q Consensus 235 ~--~~~~~W~qvsh~F~~Y~~GVR~V~f~h---~Gkd~~fw~G~yG~kvt~ssV~v 285 (308)
+ .....|++.+..|..=..-. .|.|.- ..|.+. -...||+-+-+.+|.-
T Consensus 311 ~~s~g~gg~~~~s~~F~A~s~~T-rl~F~s~~y~~~~d~-~~~~cGPvlDdV~v~~ 364 (373)
T PLN03089 311 YESQGKGGFKRASLRFKAVSNRT-RITFYSSFYHTKSDD-FGSLCGPVVDDVRVVP 364 (373)
T ss_pred EecCCCcceEEEEEEEEeccCCE-EEEEEEeecccccCc-CCCcccceeeeEEEEE
Confidence 1 12347999999999866555 455532 333322 2356899999888764
No 13
>PF13013 F-box-like_2: F-box-like domain
Probab=85.97 E-value=0.67 Score=38.29 Aligned_cols=39 Identities=31% Similarity=0.376 Sum_probs=32.4
Q ss_pred CCCCCCccccCCCCCHHHHHHHhccCChhhhhhhhccch
Q psy15070 7 IDPFNGSKLNGVYFPDEVLEVILVHMEIRTLLASRRVCK 45 (308)
Q Consensus 7 ~~~~~~~~~~~~~LP~ell~~Ils~Lp~~~L~~crlVCk 45 (308)
..|.+-..+.+.+||+||+..||.+-...++......|+
T Consensus 12 ~kp~~~~~ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 12 PKPPNRQSLTLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred CCCCCccccchhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 345555666789999999999999999999999777775
No 14
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=83.97 E-value=2.3 Score=34.63 Aligned_cols=68 Identities=15% Similarity=0.096 Sum_probs=47.3
Q ss_pred cCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHHHHHHhhcCcccCCC-CcCCCCcchhhhhhh
Q psy15070 16 NGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGFTRGLT-NEDKMNVEWTTWYLM 85 (308)
Q Consensus 16 ~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~~~~c~r~g~~~~l~-~~~~~~~dWk~~Y~~ 85 (308)
++..+|-+++.-||.++.+..|.+--.-|-.-.. .++..|+++|.++ |..... .....+.+|+.+|..
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l~~-~tdeLW~~~i~rd-Fp~~~~~~~~~~~~~Wr~~Y~~ 71 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIE-DTDELWKKLIKRD-FPEESKRQKPKEPESWRELYEK 71 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCcch-hhHHHHHHHHHhH-CcChhhcccccccchHHHHHHH
Confidence 4678999999999999999999997666633221 2344559999887 421100 123345699999987
No 15
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=66.31 E-value=87 Score=27.09 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=29.8
Q ss_pred CCCceeEEEEEEecCCCCeEEEEEEEeeeeccccCccCCCeeeceEEE
Q psy15070 237 ENFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVF 284 (308)
Q Consensus 237 ~~~~W~qvsh~F~~Y~~GVR~V~f~h~Gkd~~fw~G~yG~kvt~ssV~ 284 (308)
+...|+..+..|.. ....=.+.|...|... ..-+|+-+-+.+|+
T Consensus 116 ~~~~w~~~s~~F~A-~~t~~~l~f~~~~~~~---d~~cGp~iDnV~vk 159 (159)
T PF04862_consen 116 GSGGWDTYSFTFTA-SSTRITLTFHNPGMES---DSACGPVIDNVSVK 159 (159)
T ss_pred CCCCcEEEEEEEEe-CCCEEEEEEECCCccC---CCCceeEEEEEEeC
Confidence 34569999999999 7655555554443211 13789988887764
No 16
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=53.04 E-value=1.1e+02 Score=23.94 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=37.0
Q ss_pred CCceEEeeeeccccCCCceEEEEEEEeccCcceeeeeccccccCCCCceeEEEEEEecCCCCeEEEEEEEee
Q psy15070 193 NPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIGENFKWQKVENKFENYPSGVRYILFIHEG 264 (308)
Q Consensus 193 ~P~I~vsdwy~~r~dc~~~Y~l~V~Ll~~~~~vi~~f~~~~~~~~~~~W~qvsh~F~~Y~~GVR~V~f~h~G 264 (308)
.=.-+||-|...-.. + .+.|.|.+.+...-..+... .......|++++.+|+-- .+..-+.|.-..
T Consensus 61 G~~Y~~s~~vk~~~~--~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~W~~~s~~ft~~-~~~~~~~l~~~~ 126 (131)
T PF02018_consen 61 GKTYTVSFWVKADSG--G--TVSVSLRDEDGSPYNWYTGQ-TVTITGEWTKYSGTFTAP-SDDDTVRLYFEI 126 (131)
T ss_dssp TSEEEEEEEEEESSS--E--EEEEEEEESSTTTEEEEEEE-EEEETSSEEEEEEEEEEE-SSCEEEEEEEEE
T ss_pred CCEEEEEEEEEeCCC--C--EEEEEEEEcCCCCcEEEEEE-EEECCCCcEEEEEEEEEC-CCCceEEEEEEe
Confidence 446677777755554 3 44455544444211111110 222348899999999986 666666665444
No 17
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=50.40 E-value=1.1e+02 Score=28.27 Aligned_cols=84 Identities=14% Similarity=0.161 Sum_probs=52.6
Q ss_pred EEeeeeccccCCCceEEEEEEEeccCcceeeeeccccccCCCCceeEEEEEEecCCCCeEEEEEEEeeeeccccCccCCC
Q psy15070 197 VYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIGENFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGP 276 (308)
Q Consensus 197 ~vsdwy~~r~dc~~~Y~l~V~Ll~~~~~vi~~f~~~~~~~~~~~W~qvsh~F~~Y~~GVR~V~f~h~Gkd~~fw~G~yG~ 276 (308)
.|+-|.-++ +.-|.|.|.|.|.++++..-+-+... -..|+.++-..-.|-|.+|.=.+.. + .+|+.
T Consensus 109 ~I~vWV~G~---n~~h~L~v~lrD~~G~~~~l~~G~L~---f~GWK~L~~~iP~~ip~~r~r~~q~---~-----~~yp~ 174 (217)
T PF04620_consen 109 SISVWVYGD---NYPHWLEVLLRDAKGEVHQLPLGSLN---FDGWKNLTVNIPPYIPDVRNRILQQ---Y-----PRYPR 174 (217)
T ss_pred EEEEEEECC---CCCceEEEEEEcCCCCEEEEEeeeec---CCceeEEEEECCCCCCccceeeeee---c-----ccCCC
Confidence 577788665 45678999999999988665433222 2567888877777777776544442 2 34555
Q ss_pred eeeceEEEEEcCCceeeeecCCCC
Q psy15070 277 KMTRATVFLIPPGQSYSIRTDGNL 300 (308)
Q Consensus 277 kvt~ssV~v~~~~~~~~~~~~~~~ 300 (308)
...+.+.. .|+|++|+..
T Consensus 175 ~~~~l~f~------gfrI~~dp~~ 192 (217)
T PF04620_consen 175 SDPGLKFV------GFRIDRDPDE 192 (217)
T ss_pred CCCceEEE------EEEEECChhh
Confidence 44444433 4666666544
No 18
>KOG2502|consensus
Probab=49.93 E-value=9.1 Score=37.69 Aligned_cols=38 Identities=26% Similarity=0.529 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHhccCChh--------hhhhhhccchhhHHHhhhhH
Q psy15070 18 VYFPDEVLEVILVHMEIR--------TLLASRRVCKKWKSLIETQV 55 (308)
Q Consensus 18 ~~LP~ell~~Ils~Lp~~--------~L~~crlVCk~W~~li~~~~ 55 (308)
..||.|+|.+|+.+++.. ..+.|..||+.|+++.++..
T Consensus 46 ~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v 91 (355)
T KOG2502|consen 46 AALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIV 91 (355)
T ss_pred hcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccc
Confidence 479999999999998765 45669999999999887543
No 19
>PHA00692 hypothetical protein
Probab=49.38 E-value=10 Score=28.09 Aligned_cols=14 Identities=36% Similarity=0.840 Sum_probs=12.7
Q ss_pred EEEEEecCCCCeEE
Q psy15070 244 VENKFENYPSGVRY 257 (308)
Q Consensus 244 vsh~F~~Y~~GVR~ 257 (308)
-.|-|-.||||.||
T Consensus 30 rthyfveyppgfrf 43 (74)
T PHA00692 30 RTHYFVEYPPGFRF 43 (74)
T ss_pred ceeEeEecCCCccc
Confidence 38999999999997
No 20
>KOG4408|consensus
Probab=40.01 E-value=7.4 Score=38.30 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=43.3
Q ss_pred cccCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHHhhc
Q psy15070 14 KLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERAILE 63 (308)
Q Consensus 14 ~~~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c~r~ 63 (308)
.+.+..+|..++..|++++.+++|++|++|.++=+.+.+...+ .+.|.+.
T Consensus 5 ~~~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~ 55 (386)
T KOG4408|consen 5 PLGLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKY 55 (386)
T ss_pred ccchhhcccccceeeecccchhhhhcceeechHHhhhhhcccccccccccc
Confidence 4567889999999999999999999999999999999986555 7778554
No 21
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=30.33 E-value=39 Score=26.56 Aligned_cols=24 Identities=21% Similarity=0.085 Sum_probs=21.1
Q ss_pred cCCCCCHHHHHHHhccCChhhhhh
Q psy15070 16 NGVYFPDEVLEVILVHMEIRTLLA 39 (308)
Q Consensus 16 ~~~~LP~ell~~Ils~Lp~~~L~~ 39 (308)
....||.|+-..||++|+-.||..
T Consensus 71 ~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 71 YWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred chhhCCHHHHHHHHHcCCHHHHHH
Confidence 356799999999999999999854
No 22
>PF10370 DUF2437: Domain of unknown function (DUF2437); InterPro: IPR018833 This entry represents the N-terminal 50 amino acids of a group of bacterial proteins often annotated as fumarylacetoacetate hydrolase-containing enzymes. In most cases these proteins also contain IPR002529 from INTERPRO, which is found towards the C terminus. ; PDB: 3RR6_A 2DFU_D 3QDF_A.
Probab=27.55 E-value=42 Score=23.49 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=15.6
Q ss_pred eEEEEEEEeeeeccccCccCCCeeeceEEEE
Q psy15070 255 VRYILFIHEGVDSQFWQGHYGPKMTRATVFL 285 (308)
Q Consensus 255 VR~V~f~h~Gkd~~fw~G~yG~kvt~ssV~v 285 (308)
||+|+|.|.|+- +||.- .+-.|.+
T Consensus 1 Mr~~Rf~~~g~~------~~G~l-~gd~v~~ 24 (50)
T PF10370_consen 1 MRIVRFSHGGEI------RYGVL-EGDRVRV 24 (50)
T ss_dssp -EEEEEEETTEE------EEEEE-ETTCEEE
T ss_pred CeEEEEeeCCCc------EEEEE-ECCEEEE
Confidence 689999999875 46763 3444443
No 23
>PF12100 DUF3576: Domain of unknown function (DUF3576); InterPro: IPR021959 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 100 amino acids in length. This domain has a single completely conserved residue G that may be functionally important.
Probab=24.71 E-value=1e+02 Score=25.30 Aligned_cols=30 Identities=17% Similarity=0.417 Sum_probs=25.4
Q ss_pred CCceEEeeeeccccCCCceEEEEEEEeccC
Q psy15070 193 NPAIVYSEWFCRRFDCGGRYDLRVALLNEA 222 (308)
Q Consensus 193 ~P~I~vsdwy~~r~dc~~~Y~l~V~Ll~~~ 222 (308)
--.+.+.|||.....-+-.|.+.|-.||..
T Consensus 27 ~gGVI~TdWY~~p~~~~er~k~tv~Ild~~ 56 (103)
T PF12100_consen 27 FGGVIVTDWYSPPPGPNERFKATVYILDRA 56 (103)
T ss_pred CCCEEEeccccCCCCCCeeEEEEEEEECcc
Confidence 346889999999888888999999888754
No 24
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=23.27 E-value=38 Score=23.45 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=18.6
Q ss_pred CeEEEEEE--EeeeeccccCccCCC
Q psy15070 254 GVRYILFI--HEGVDSQFWQGHYGP 276 (308)
Q Consensus 254 GVR~V~f~--h~Gkd~~fw~G~yG~ 276 (308)
-||-+.|. .++.|..+|++|.|-
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~ 26 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGR 26 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCe
Confidence 37899998 555699999999874
No 25
>PF14751 DUF4474: Domain of unknown function (DUF4474)
Probab=21.68 E-value=68 Score=30.16 Aligned_cols=30 Identities=30% Similarity=0.446 Sum_probs=25.1
Q ss_pred EEEEEEeeeec--cccCccCCCeeeceEEEEEc
Q psy15070 257 YILFIHEGVDS--QFWQGHYGPKMTRATVFLIP 287 (308)
Q Consensus 257 ~V~f~h~Gkd~--~fw~G~yG~kvt~ssV~v~~ 287 (308)
-|.|.++||.= +||+|.||. .||+.|=|--
T Consensus 51 pi~F~y~gk~wlI~~WKGqY~l-~tG~EiGIY~ 82 (241)
T PF14751_consen 51 PIYFDYGGKTWLIWFWKGQYGL-GTGGEIGIYN 82 (241)
T ss_pred ceeEeeCCeEEEEEEeccccCC-ccccEEEEEe
Confidence 47889998874 799999986 9999998843
No 26
>PF07148 MalM: Maltose operon periplasmic protein precursor (MalM); InterPro: IPR010794 This family consists of several maltose operon periplasmic protein precursor (MalM) sequences. The function of this family is unknown [].; GO: 0008643 carbohydrate transport, 0042597 periplasmic space
Probab=21.36 E-value=4.3e+02 Score=22.44 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=47.3
Q ss_pred cCCceEEeeeeccccCCCceEEEEEEEeccCcceeeee-cccccc-----CCCCceeEEEEEEecC---CCCeEEEEEEE
Q psy15070 192 LNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYH-IHHTDI-----GENFKWQKVENKFENY---PSGVRYILFIH 262 (308)
Q Consensus 192 ~~P~I~vsdwy~~r~dc~~~Y~l~V~Ll~~~~~vi~~f-~~~~~~-----~~~~~W~qvsh~F~~Y---~~GVR~V~f~h 262 (308)
..-.|.++-++ +...+|-=.|.+||++.+++..+ ...+.. ... .+...+|+=. +.+-+|+.+.-
T Consensus 16 g~l~i~l~S~v----~~~~vfaP~vliLD~~~~~~~~~~~~~F~y~~~~~~~~---~rl~~~~~~~p~~~~~~~YlvIYT 88 (135)
T PF07148_consen 16 GSLSITLSSYV----KDKSVFAPNVLILDENFQPVRTYPSSDFKYQPPDLFSG---DRLEAEFSLTPPPGQQAIYLVIYT 88 (135)
T ss_pred ccEEEEEEEEE----cCCcEEeeeEEEECCCCCEEEEcChHHeEEecCcccCC---CeEEEEEEecCCCCCCceEEEEEc
Confidence 35567777777 44688889999999999999877 333222 222 2555555555 88899999887
Q ss_pred eeee
Q psy15070 263 EGVD 266 (308)
Q Consensus 263 ~Gkd 266 (308)
.-+|
T Consensus 89 t~~d 92 (135)
T PF07148_consen 89 TEQD 92 (135)
T ss_pred CHHH
Confidence 7666
Done!