Query psy15070
Match_columns 308
No_of_seqs 207 out of 700
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 19:41:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e31_A FBS1, F-box only protei 100.0 1.8E-81 6.2E-86 592.5 28.1 246 14-287 48-297 (297)
2 2rj2_A F-box only protein 2; u 100.0 3E-71 1E-75 490.6 21.6 180 80-287 3-185 (185)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 99.2 2.2E-11 7.5E-16 85.5 4.2 43 14-56 6-48 (53)
4 2ovr_B FBW7, F-BOX/WD repeat p 98.8 9.7E-09 3.3E-13 97.0 7.0 71 15-85 17-95 (445)
5 3v7d_B Cell division control p 98.6 2.7E-08 9.2E-13 93.9 5.5 51 16-66 14-66 (464)
6 3l2o_B F-box only protein 4; s 98.4 1.2E-07 4E-12 89.4 4.3 47 17-63 5-52 (312)
7 1p22_A F-BOX/WD-repeat protein 98.4 1E-07 3.5E-12 90.0 3.8 48 16-63 10-62 (435)
8 2ast_B S-phase kinase-associat 98.0 2.1E-06 7.2E-11 78.5 3.6 43 14-56 6-48 (336)
9 2p1m_B Transport inhibitor res 97.6 2.7E-05 9.3E-10 76.3 3.3 35 16-50 5-40 (594)
10 3ogk_B Coronatine-insensitive 97.3 8.6E-05 3E-09 72.9 3.0 35 17-51 13-48 (592)
11 2zex_A S-layer associated mult 84.4 11 0.00039 30.3 10.9 112 92-251 3-116 (147)
12 2zez_A Family 16 CBM-2, S-laye 76.6 30 0.001 28.4 12.2 111 94-255 2-116 (144)
13 4hfx_A Transcription elongatio 67.6 2.5 8.6E-05 33.1 2.1 59 20-85 13-73 (97)
No 1
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=100.00 E-value=1.8e-81 Score=592.54 Aligned_cols=246 Identities=32% Similarity=0.658 Sum_probs=223.6
Q ss_pred cccCCCCCHHHHHHHhccCChhhhh-hhhccchhhHHHhhhhHH-HHHHhhcCcccCCCCcCCCCcchhhhhhhcCCCCc
Q psy15070 14 KLNGVYFPDEVLEVILVHMEIRTLL-ASRRVCKKWKSLIETQVL-KERAILEGFTRGLTNEDKMNVEWTTWYLMLSPNSL 91 (308)
Q Consensus 14 ~~~~~~LP~ell~~Ils~Lp~~~L~-~crlVCk~W~~li~~~~~-~~~c~r~g~~~~l~~~~~~~~dWk~~Y~~~~~k~p 91 (308)
+..+..||+|||++||++||+++|+ +|++|||+|++|++++.| +++|++.|+.++.. ..++..+||.+|+. ++
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~~~~~~-~~~~~~~Wk~~y~~-~~--- 122 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGS-ADEERDHWQQFYFL-SK--- 122 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTCCCC------CCSCHHHHHHH-HH---
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCcccccc-cCCCCCChhhhheh-ee---
Confidence 4578999999999999999999999 999999999999999999 99999998754422 22367889999998 55
Q ss_pred ccccccCCCCCCCCcceeeEeecCCCceEeecCCCCCCCCCCC-CCCCCCCCCceeeeecccccCCCCCcceeeeeccce
Q psy15070 92 FNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQP-LPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGR 170 (308)
Q Consensus 92 ~gRNLikNp~~ed~~~~W~~~~~gGdgw~vE~~p~g~~~~~~~-~P~~~~~~~~~~~~~~~~~~~~~~g~~~cf~tSy~w 170 (308)
++||||+||+++++|.+|+++.||||+|++|++|++++ .+ +|+..+ ++||||||+|
T Consensus 123 ~gRNLL~NP~~e~~l~~W~~v~nGGd~w~ve~~p~~~~---~~~~p~~~~--------------------~~cF~tSy~w 179 (297)
T 2e31_A 123 RRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPGDNG---VEFTQDDSV--------------------KKYFASSFEW 179 (297)
T ss_dssp HCCCCSSCSSSSSSSTTCEEEECCTTCCEEEESSCTTC---CCCCSCTTC--------------------CEEEECCSSC
T ss_pred cccceeecCccccccccceeccCCCcceEeecCCcccc---cccCCCccc--------------------cceEeccCcc
Confidence 99999999999999999999999999999999886553 34 676566 9999999999
Q ss_pred eeeEEEEecccCCCCHHHHhhcCCceEEeeeeccccCCCceEEEEEEEeccCcceeeee-ccccccCCCCceeEEEEEEe
Q psy15070 171 CSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYH-IHHTDIGENFKWQKVENKFE 249 (308)
Q Consensus 171 c~k~Q~IDL~~eG~~~~lLD~~~P~I~vsdwy~~r~dc~~~Y~l~V~Ll~~~~~vi~~f-~~~~~~~~~~~W~qvsh~F~ 249 (308)
|.|+|+|||++||||++|||++||+|+|||||++|+||+|+|+|+|+|||+++++|++| +.++.+..++.|+||+|||+
T Consensus 180 c~k~Q~IDL~~EG~~~elLD~~qP~I~Vsdwy~~r~dc~~~Y~l~V~Lld~~~~vi~~f~~~~~~~~~~~~W~qvsH~F~ 259 (297)
T 2e31_A 180 CRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSLYELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFI 259 (297)
T ss_dssp EEEEEEEETTTTTCCHHHHHHTCCCEEEEEEEECCTTSCEEEEEEEEEECTTCCEEEEEECCCEECCTTCCCEEEEEEEC
T ss_pred eEEEEEEEchhccCCHHHHcCcCCCcEEeeeEccCCCCCeEEEEEEEEeCCCCCEEEEEecCceecCCCCceEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999 66655522899999999999
Q ss_pred cCCCCeEEEEEEEeeeeccccCccCCCeeeceEEEEEc
Q psy15070 250 NYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIP 287 (308)
Q Consensus 250 ~Y~~GVR~V~f~h~Gkd~~fw~G~yG~kvt~ssV~v~~ 287 (308)
+||||||||+|+|+|||+|||+||||+|||||||+|+|
T Consensus 260 ~Y~~GVR~I~f~h~GkD~~fw~G~yG~rvt~ssV~v~~ 297 (297)
T 2e31_A 260 DYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP 297 (297)
T ss_dssp SCCSCCCEEEEEEEEEESSCCSSSCSCEEEEEEEEECC
T ss_pred CCCCCcEEEEEEEEeeccccCCcccCCceECcEEEEeC
Confidence 99999999999999999999999999999999999975
No 2
>2rj2_A F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, lectin, UBL conjugation pathway; 1.70A {Mus musculus} PDB: 1umh_A 2e33_A* 1umi_A*
Probab=100.00 E-value=3e-71 Score=490.61 Aligned_cols=180 Identities=34% Similarity=0.745 Sum_probs=168.0
Q ss_pred hhhhhhcCCCCcccccccCCCCCCCCcceeeEeecCCCceEeecCCCCCCCCCCCCCCCCCCCCceeeeecccccCCCCC
Q psy15070 80 TTWYLMLSPNSLFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDSKKATSSTN 159 (308)
Q Consensus 80 k~~Y~~~~~k~p~gRNLikNp~~ed~~~~W~~~~~gGdgw~vE~~p~g~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g 159 (308)
+.||++ +| ++||||+|||++++|.+|++++||||||+||.+|..++ ..++|+..+
T Consensus 3 ~~fy~~-~p---~~RNLl~Np~~e~~~~~W~~~~ngGdgW~vE~~p~d~~--~~~~p~~~~------------------- 57 (185)
T 2rj2_A 3 HMFYFL-SK---RRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPGDGN--VEFTQDDSV------------------- 57 (185)
T ss_dssp SHHHHH-HH---HCCCCCSCSSSTTTTTTCEEEEECTTCCEEEETTSCSS--CCCCSCTTC-------------------
T ss_pred eEEEEe-Cc---cccccccCCCchhcccccccccCCCCcEEEeeCCCccc--cccCCCCcc-------------------
Confidence 578998 65 99999999999999999999999999999999986664 336787666
Q ss_pred cceeeeeccceeeeEEEEecccCCCCHHHHhhcCCceEEeeeeccccCCCceEEEEEEEeccCcceeeee-cccccc--C
Q psy15070 160 TESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYH-IHHTDI--G 236 (308)
Q Consensus 160 ~~~cf~tSy~wc~k~Q~IDL~~eG~~~~lLD~~~P~I~vsdwy~~r~dc~~~Y~l~V~Ll~~~~~vi~~f-~~~~~~--~ 236 (308)
++||||||+||.|+|.|||+|||||++|||++||+|+|||||++|+||+|+|+|+|+|||+++++|++| +.++++ |
T Consensus 58 -~~cFvtSy~wc~k~Q~IDL~~EG~~~elLD~~qP~I~vsdWy~~r~dc~~~Y~l~V~Ll~~~~~vi~~f~~~~~~~~q~ 136 (185)
T 2rj2_A 58 -KKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSLYELTVRLLSENEDVLAEFATGQVAVPED 136 (185)
T ss_dssp -CEEEECCSSCEEEEEEEETTTTTCCHHHHHHTCCEEEEEEEEECCSSSCEEEEEEEEEEETTCCEEEEEECCSEECCTT
T ss_pred -cceEccccccEEEEEEEEchhcCCCHHHHhccCCCcEEEeeEcccCCCCcEEEEEEEEcccCCCEEEEEeccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 666665 4
Q ss_pred CCCceeEEEEEEecCCCCeEEEEEEEeeeeccccCccCCCeeeceEEEEEc
Q psy15070 237 ENFKWQKVENKFENYPSGVRYILFIHEGVDSQFWQGHYGPKMTRATVFLIP 287 (308)
Q Consensus 237 ~~~~W~qvsh~F~~Y~~GVR~V~f~h~Gkd~~fw~G~yG~kvt~ssV~v~~ 287 (308)
+ .|+||+|||++||||||||+|+|+|||+|||+||||+|||||||+|+|
T Consensus 137 ~--~W~qvsH~F~~Y~~GVR~I~F~h~GkD~~fw~G~yG~rvT~sSV~V~~ 185 (185)
T 2rj2_A 137 G--SWMEISHTFIDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP 185 (185)
T ss_dssp C--CCEEEEEEECSCCTTEEEEEEEEEEEESSCCSSSCSCEEEEEEEEEEC
T ss_pred C--ccEEEEEEecCCCCCcEEEEEEEEeEecccCCcccCCeeeCcEEEEeC
Confidence 4 999999999999999999999999999999999999999999999975
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.15 E-value=2.2e-11 Score=85.52 Aligned_cols=43 Identities=30% Similarity=0.481 Sum_probs=38.8
Q ss_pred cccCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH
Q psy15070 14 KLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL 56 (308)
Q Consensus 14 ~~~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~ 56 (308)
...+..||+||+.+||++||+++|++|++|||+|++++.++.+
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~l 48 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Confidence 4468899999999999999999999999999999999999887
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.75 E-value=9.7e-09 Score=97.04 Aligned_cols=71 Identities=24% Similarity=0.467 Sum_probs=58.1
Q ss_pred ccCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHHhhcCcccCCC-------CcCCCCcchhhhhhh
Q psy15070 15 LNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERAILEGFTRGLT-------NEDKMNVEWTTWYLM 85 (308)
Q Consensus 15 ~~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c~r~g~~~~l~-------~~~~~~~dWk~~Y~~ 85 (308)
-.+..||+|++.+||++|++++|++|++|||+|+.+++++.+ +++|.++++..+.. .......+|+..|..
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~ 95 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIR 95 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHH
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhh
Confidence 357889999999999999999999999999999999999887 99999887643321 111234689999975
No 5
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.61 E-value=2.7e-08 Score=93.92 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=46.1
Q ss_pred cCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhh-hHH-HHHHhhcCcc
Q psy15070 16 NGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIET-QVL-KERAILEGFT 66 (308)
Q Consensus 16 ~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~-~~~-~~~c~r~g~~ 66 (308)
.+..||+||+.+||++||+++|++|++|||+|+.++++ +.+ +++|.++++.
T Consensus 14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~ 66 (464)
T 3v7d_B 14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFV 66 (464)
T ss_dssp HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSC
T ss_pred ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccc
Confidence 36679999999999999999999999999999999998 777 9999887763
No 6
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.43 E-value=1.2e-07 Score=89.42 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHHhhc
Q psy15070 17 GVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERAILE 63 (308)
Q Consensus 17 ~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c~r~ 63 (308)
+..||+||+.+||++|+|+||++|.+|||+||.+++|+.+ |.+|.+.
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 5679999999999999999999999999999999999998 9999874
No 7
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.42 E-value=1e-07 Score=90.04 Aligned_cols=48 Identities=25% Similarity=0.368 Sum_probs=43.8
Q ss_pred cCCCCCHH----HHHHHhccCChhhhhhhhccchhhHHHhhhhHH-HHHHhhc
Q psy15070 16 NGVYFPDE----VLEVILVHMEIRTLLASRRVCKKWKSLIETQVL-KERAILE 63 (308)
Q Consensus 16 ~~~~LP~e----ll~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~-~~~c~r~ 63 (308)
.+..||+| |+.+||++||+++|++|++|||+|+.+++++.+ +++|.+.
T Consensus 10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~ 62 (435)
T 1p22_A 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM 62 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 35669999 999999999999999999999999999999887 9888765
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.04 E-value=2.1e-06 Score=78.46 Aligned_cols=43 Identities=30% Similarity=0.481 Sum_probs=38.7
Q ss_pred cccCCCCCHHHHHHHhccCChhhhhhhhccchhhHHHhhhhHH
Q psy15070 14 KLNGVYFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL 56 (308)
Q Consensus 14 ~~~~~~LP~ell~~Ils~Lp~~~L~~crlVCk~W~~li~~~~~ 56 (308)
...+..||+|++.+||++|+.+++++|++|||+|+.++.++.+
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~ 48 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence 4568899999999999999999999999999999999977654
No 9
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.58 E-value=2.7e-05 Score=76.35 Aligned_cols=35 Identities=29% Similarity=0.576 Sum_probs=29.6
Q ss_pred cCCCCCHHHHHHHhccCC-hhhhhhhhccchhhHHH
Q psy15070 16 NGVYFPDEVLEVILVHME-IRTLLASRRVCKKWKSL 50 (308)
Q Consensus 16 ~~~~LP~ell~~Ils~Lp-~~~L~~crlVCk~W~~l 50 (308)
.++.||+||+.+||++|| .+++++|++|||+|+.+
T Consensus 5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 367899999999999999 99999999999999999
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.31 E-value=8.6e-05 Score=72.86 Aligned_cols=35 Identities=20% Similarity=0.418 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHhccC-ChhhhhhhhccchhhHHHh
Q psy15070 17 GVYFPDEVLEVILVHM-EIRTLLASRRVCKKWKSLI 51 (308)
Q Consensus 17 ~~~LP~ell~~Ils~L-p~~~L~~crlVCk~W~~li 51 (308)
...||+|++.+||++| +.+++.+|++|||+|+.+.
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 4579999999999999 8999999999999999984
No 11
>2zex_A S-layer associated multidomain endoglucanase; family 16 CBM-1 cellopentaose complex, glycosidase, hydrolase; HET: BGC; 1.20A {Thermoanaerobacteriumpolysaccharolyticum} PDB: 2zew_A 2zey_A* 3oea_A* 3oeb_A*
Probab=84.41 E-value=11 Score=30.32 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=62.1
Q ss_pred ccccccCCCCCCCCcceeeEeecCCCceEeecCCCCCCCCCCCCCCCCCCCCceeeeecccccCCCCCcceeeeecccee
Q psy15070 92 FNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDSKKATSSTNTESCFVTSYGRC 171 (308)
Q Consensus 92 ~gRNLikNp~~ed~~~~W~~~~~gGdgw~vE~~p~g~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~cf~tSy~wc 171 (308)
..+|||.|+..|+++..|... ++.+-.+..+. |- |...-.+++...-
T Consensus 3 ~~~Nli~N~~FE~g~~~W~~~--~~~~~~~~~~~---------~~----------------------G~~~l~~~~~~~~ 49 (147)
T 2zex_A 3 HMVNMVSNPGFEDGLDSWQDW--QQDMSAVPEAA---------HN----------------------GALGLKIGGGKAA 49 (147)
T ss_dssp CCEECCSSTTSTTTTTTCEET--TSCEEEEGGGC---------SS----------------------SSCEEEECSSSCE
T ss_pred cccceecCCCcccCccCCcCc--CCceeEEeccc---------cC----------------------CceEEEEcCCCCc
Confidence 368999999999999999754 22222333210 00 1111123443445
Q ss_pred eeEEEEecccCCCCHHHHhhcCCceEEeeeeccccCCCceEEEEEEEeccCc-ceeeeecccccc-CCCCceeEEEEEEe
Q psy15070 172 SKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYDLRVALLNEAK-KLLAYHIHHTDI-GENFKWQKVENKFE 249 (308)
Q Consensus 172 ~k~Q~IDL~~eG~~~~lLD~~~P~I~vsdwy~~r~dc~~~Y~l~V~Ll~~~~-~vi~~f~~~~~~-~~~~~W~qvsh~F~ 249 (308)
...|.|.|+. .=.-++|-|+.-.-.....+.+.|+..+.+. ..+... .+ .....|.+++..|.
T Consensus 50 ~~~Q~v~v~~-----------~~~Y~ls~wvk~~~~g~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~W~~~s~~ft 114 (147)
T 2zex_A 50 GGGQDIPLKP-----------NTTYILGAWAKFDSKPAGTFDVVVQYHLKDANNTYVQH----ILNFNETDWTYKQLLFT 114 (147)
T ss_dssp EEEEECCCCT-----------TCEEEEEEEEEESSCCSSCEEEEEEEEBSSTTCCEEEE----EEEECCSSCEEEEEEEE
T ss_pred cEeEEEEECC-----------CCEEEEEEEEEeccCCCceEEEEEEEeeCCCCCcEEEe----EeeeCCCCcEEEEEEEE
Confidence 7788888764 2345677777543333335566666543222 111111 11 24578999999998
Q ss_pred cC
Q psy15070 250 NY 251 (308)
Q Consensus 250 ~Y 251 (308)
-+
T Consensus 115 t~ 116 (147)
T 2zex_A 115 TP 116 (147)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 12
>2zez_A Family 16 CBM-2, S-layer associated multidomain endoglucanase; family 16 carbohydrate binding module-2; 1.90A {Thermoanaerobacterium polysaccharolytiorganism_taxid}
Probab=76.65 E-value=30 Score=28.39 Aligned_cols=111 Identities=15% Similarity=0.201 Sum_probs=58.9
Q ss_pred ccccCCCCCCCCcceeeEeecCCCceEeecCCCCCCCCCCCCCCCCCCCCceeeeecccccCCCCCcceee-eeccceee
Q psy15070 94 RNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDSKKATSSTNTESCF-VTSYGRCS 172 (308)
Q Consensus 94 RNLikNp~~ed~~~~W~~~~~gGdgw~vE~~p~g~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~cf-~tSy~wc~ 172 (308)
.|||.|+..|+++.+|... ++..-.|+.+. |-. ..++ +++..--.
T Consensus 2 ~Nli~N~gFE~Gl~~W~~~--g~~~~~v~~~~---------~~G-----------------------s~alk~s~~~~~~ 47 (144)
T 2zez_A 2 SNLIVNGTAENGMDGWPDW--GYPVSAVPEAA---------YGG-----------------------TKGFKLSGGKQAG 47 (144)
T ss_dssp CCSSTTTTSTTTTTTSCCC--SSSEEEEGGGC---------SST-----------------------TCEEEECTTSCEE
T ss_pred CccccCCCcccCccCCccc--CCCCceecccc---------cCC-----------------------cceeEEecCCccc
Confidence 5999999999999999754 23333454331 111 2222 34444356
Q ss_pred eEEEEecccCCCCHHHHhhcCCceEEeeeeccccCCCceEE--EEEEEeccCcc-eeeeeccccccCCCCceeEEEEEEe
Q psy15070 173 KQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGRYD--LRVALLNEAKK-LLAYHIHHTDIGENFKWQKVENKFE 249 (308)
Q Consensus 173 k~Q~IDL~~eG~~~~lLD~~~P~I~vsdwy~~r~dc~~~Y~--l~V~Ll~~~~~-vi~~f~~~~~~~~~~~W~qvsh~F~ 249 (308)
-.|.|.|+- .-.-++|-|.-....-+..+. |.+...|+++. ..... . .....|+|++.+|.
T Consensus 48 ~~Q~V~l~P-----------nttYtLSa~vk~~~~~g~~~~v~l~~~~~d~~~~~~~~~~----~-~~~~~W~~~s~~Ft 111 (144)
T 2zez_A 48 MGQKVALKP-----------NTTYILGAWGKFTAKPGTYCDVIVQYHLKDANNTYVQNIL----R-FTETDWTYKQVVFT 111 (144)
T ss_dssp EEEECCCCT-----------TCEEEEEEEEEESSCCSSCEEEEEEEEBSSTTCCEEEEEE----E-ECCSSCEEEEEEEE
T ss_pred EEEEEEECC-----------CCEEEEEEEEEEcccCCceEEEEEeecccccCCceeEEEe----e-cCCCCCEEEEEEEE
Confidence 678888764 345577777622211111111 22222222211 11110 1 24578999999999
Q ss_pred cCCCCe
Q psy15070 250 NYPSGV 255 (308)
Q Consensus 250 ~Y~~GV 255 (308)
- |++.
T Consensus 112 T-~~~~ 116 (144)
T 2zez_A 112 T-PDAF 116 (144)
T ss_dssp C-CSSB
T ss_pred c-CCCc
Confidence 8 6654
No 13
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=67.59 E-value=2.5 Score=33.10 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=32.7
Q ss_pred CCHHHHHHHhccCChhhhhhhhccchhhHHH-hhhhH-HHHHHhhcCcccCCCCcCCCCcchhhhhhh
Q psy15070 20 FPDEVLEVILVHMEIRTLLASRRVCKKWKSL-IETQV-LKERAILEGFTRGLTNEDKMNVEWTTWYLM 85 (308)
Q Consensus 20 LP~ell~~Ils~Lp~~~L~~crlVCk~W~~l-i~~~~-~~~~c~r~g~~~~l~~~~~~~~dWk~~Y~~ 85 (308)
.|-+||.-||.+..|.+|.+--.-|- .| -+++. |+++|.|+ |... ......+|+.+|++
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~nP---~L~~dTdeLWk~~c~rd-F~~~---~p~e~esWRelY~r 73 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYNH---VLIEETDQLWKVHCHRD-FKEE---RPEEYESWREMYLR 73 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC---------CCHHHHHHHC-----CCS---CCCSSSCHHHHHHH
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhCc---ccchhhHHHHHHHHHhH-Cccc---CCCCCCCHHHHHHH
Confidence 68899999999999999998666564 33 33444 49999987 4221 23567899999997
Done!