RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15070
         (308 letters)



>gnl|CDD|218015 pfam04300, FBA, F-box associated region.  Members of this family
           are associated with F-box domains, hence the name FBA.
           This domain is probably involved in binding other
           proteins that will be targeted for ubiquitination. Human
           FBXO2 is involved in binding to N-glycosylated proteins.
          Length = 184

 Score =  125 bits (316), Expect = 2e-35
 Identities = 66/199 (33%), Positives = 99/199 (49%), Gaps = 27/199 (13%)

Query: 92  FNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDS 151
             RNL++NPCG++  + W I + GG+GWKVE  P          PD              
Sbjct: 10  LRRNLLRNPCGEEDLSGWSI-DEGGDGWKVEELPGDNGTI---FPDA-----------KV 54

Query: 152 KKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGR 211
           KK         CFVTS+  C K+Q +DL       ++++   P IV  +W+  R DCG  
Sbjct: 55  KK---------CFVTSFEWCRKEQVVDLKAEGLWEELLDTFQPDIVVKDWYEERADCGCI 105

Query: 212 YDLRVALLNEAKKLLAYHIHHTD-IGENF--KWQKVENKFENYPSGVRYILFIHEGVDSQ 268
           Y L V LL+  + +LA          +     W++V + F +Y  GVRY+ F H G D+Q
Sbjct: 106 YQLTVQLLSADETVLAEFTPPPVEDPQWNDHNWKEVSHVFSDYGPGVRYVHFEHGGQDTQ 165

Query: 269 FWQGHYGPKMTRATVFLIP 287
           FW+G +G ++T ++V + P
Sbjct: 166 FWKGWFGARVTNSSVIVKP 184


>gnl|CDD|201368 pfam00646, F-box, F-box domain.  This domain is approximately 50
          amino acids long, and is usually found in the
          N-terminal half of a variety of proteins. Two motifs
          that are commonly found associated with the F-box
          domain are the leucine rich repeats (LRRs; pfam00560
          and pfam07723) and the WD repeat (pfam00400). The F-box
          domain has a role in mediating protein-protein
          interactions in a variety of contexts, such as
          polyubiquitination, transcription elongation,
          centromere binding and translational repression.
          Length = 48

 Score = 44.9 bits (107), Expect = 7e-07
 Identities = 14/43 (32%), Positives = 27/43 (62%)

Query: 20 FPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAIL 62
           PD++L  IL  ++ + LL    V K+W+SL+++  L ++ +L
Sbjct: 6  LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48


>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets. 
          Length = 41

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 20 FPDEVLEVILVHMEIRTLLASRRVCKKWKSLI 51
           PDE+LE IL  ++ + LL  R+V +KW+SLI
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLI 32


>gnl|CDD|221867 pfam12937, F-box-like, F-box-like.  This is an F-box-like family.
          Length = 47

 Score = 39.4 bits (93), Expect = 7e-05
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 21 PDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL 56
          PDE+L  I  +++ R LL    VC++W+ L     L
Sbjct: 5  PDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSL 40


>gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed.
          Length = 396

 Score = 30.2 bits (69), Expect = 1.6
 Identities = 11/14 (78%), Positives = 11/14 (78%), Gaps = 1/14 (7%)

Query: 226 LAYHIHHTDIGENF 239
           LAY IH TDIGE F
Sbjct: 354 LAYKIH-TDIGEGF 366


>gnl|CDD|184782 PRK14661, acpS, 4'-phosphopantetheinyl transferase; Provisional.
          Length = 169

 Score = 29.1 bits (65), Expect = 2.1
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 4/33 (12%)

Query: 102 GQDKF--NSWEILNNGGNGWKVET--PPFGLSQ 130
           G + F    +E+L     GW++ET  PPF L +
Sbjct: 118 GDESFLRKRFEVLERSVEGWEIETSLPPFTLKK 150


>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
           family, delta subunit. Chaperonins are involved in
           productive folding of proteins. They share a common
           general morphology, a double toroid of 2 stacked rings.
           In contrast to bacterial group I chaperonins (GroEL),
           each ring of the eukaryotic cytosolic chaperonin (CTT)
           consists of eight different, but homologous subunits.
           Their common function is to sequester nonnative proteins
           inside their central cavity and promote folding by using
           energy derived from ATP hydrolysis. The best studied in
           vivo substrates of CTT are actin and tubulin.
          Length = 515

 Score = 29.6 bits (67), Expect = 2.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 217 ALLNEAKKLLAYHIHHTDIGENFK 240
           ALL+  + LL   IH T I E+F+
Sbjct: 91  ALLSACESLLKKGIHPTVISESFQ 114


>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed.
          Length = 530

 Score = 29.2 bits (66), Expect = 2.8
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 248 FENYPSGVRYILFIHEGV 265
             ++P   RY+L + E V
Sbjct: 42  LRDFPDDFRYVLGLQEAV 59


>gnl|CDD|221464 pfam12215, GBA2_N, beta-Glucocerebrosidase 2 N terminal.  This
           domain is found in bacteria, archaea and eukaryotes.
           This domain is typically between 320 to 354 amino acids
           in length. This domain is found associated with
           pfam04685. This domain is found in the protein
           beta-Glucocerebrosidase 2. It is found just after the
           extreme N terminus. This protein is located in the ER.
           The N terminal is thought to be the luminal domain while
           the C terminal is the cytosolic domain. The catalytic
           domain of GBA-2 is unknown.
          Length = 311

 Score = 28.8 bits (65), Expect = 3.0
 Identities = 9/21 (42%), Positives = 9/21 (42%)

Query: 106 FNSWEILNNGGNGWKVETPPF 126
           FN W I NNGG         F
Sbjct: 20  FNLWHIFNNGGEHIFKNACQF 40


>gnl|CDD|182159 PRK09946, PRK09946, hypothetical protein; Provisional.
          Length = 270

 Score = 28.6 bits (64), Expect = 4.5
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 10/53 (18%)

Query: 201 WFCRRFDCGGRY-DLRVALLNE-----AKKLL--AYHIHHTDIGENFKWQKVE 245
           WF R F  GG Y D+  AL+ E     A+ L+  A+     D  ENF  Q+V 
Sbjct: 20  WFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLAD--ENFAHQEVS 70


>gnl|CDD|238801 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase
           (NAPRTase) family. Nicotinate phosphoribosyltransferase
           catalyses the formation of NAMN and PPi from
           5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic
           acid, this is the first, and also rate limiting,
           reaction in the NAD salvage synthesis. This salvage
           pathway serves to recycle NAD degradation products.
          Length = 343

 Score = 28.0 bits (63), Expect = 6.5
 Identities = 15/72 (20%), Positives = 19/72 (26%), Gaps = 1/72 (1%)

Query: 184 TMLDVIERLNP-AIVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIGENFKWQ 242
           TM+       P   V  E+  R    GG Y +   L    K L        +I    K  
Sbjct: 10  TMMQAYLYPYPNTRVVFEFTFRSNPFGGDYIVFAGLEEVLKLLENLRFTEEEIEYLKKLL 69

Query: 243 KVENKFENYPSG 254
                F      
Sbjct: 70  IFGEFFLYLLFL 81


>gnl|CDD|233881 TIGR02470, sucr_synth, sucrose synthase.  This model represents
           sucrose synthase, an enzyme that, despite its name,
           generally uses rather produces sucrose. Sucrose plus UDP
           (or ADP) becomes D-fructose plus UDP-glucose (or
           ADP-glucose), which is then available for cell wall (or
           starch) biosynthesis. The enzyme is homologous to
           sucrose phosphate synthase, which catalyzes the
           penultimate step in sucrose synthesis. Sucrose synthase
           is found, so far, exclusively in plants and
           cyanobacteria [Energy metabolism, Biosynthesis and
           degradation of polysaccharides].
          Length = 784

 Score = 28.1 bits (63), Expect = 6.6
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 7/45 (15%)

Query: 110 EILNNGGNGWKVETPPFGLSQEAQPLPD-----DTIPSYWTKITK 149
           EI+ +G +G+ ++  P+   + A+ + D     D  PSYW KI++
Sbjct: 680 EIIQDGVSGFHID--PYHGEEAAEKIVDFFEKCDEDPSYWQKISQ 722


>gnl|CDD|235330 PRK05015, PRK05015, aminopeptidase B; Provisional.
          Length = 424

 Score = 27.5 bits (62), Expect = 9.4
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 230 IHHTDIGENFKWQKVENKFENYPSGVRYILFIHEG--VDSQ--FWQGHYGPKMTRA 281
           IH     +    Q+   K +    G++++    EG  ++    FWQG   PK TR 
Sbjct: 29  IHLNGKDDLGLIQRAARKLDG--QGIKHVALAGEGWDLERCWAFWQGFRTPKGTRK 82


>gnl|CDD|233690 TIGR02025, BchH, magnesium chelatase, H subunit.  This model
           represents the H subunit of the magnesium chelatase
           complex responsible for magnesium insertion into the
           protoporphyrin IX ring in the biosynthesis of both
           chlorophyll and bacteriochlorophyll. In
           chlorophyll-utilizing species, this gene is known as
           ChlH, while in bacteriochlorophyll-utilizing spoecies it
           is called BchH. Subunit H is the largest (~140kDa) of
           the three subunits (the others being BchD/ChlD and
           BchI/ChlI), and is known to bind protoporphyrin IX.
           Subunit H is homologous to the CobN subunit of
           cobaltochelatase and by anology with that enzyme,
           subunit H is believed to also bind the magnesium ion
           which is inserted into the ring. In conjunction with the
           hydrolysis of ATP by subunits I and D, a conformation
           change is believed to happen in subunit H causing the
           magnesium ion insertion into the distorted
           protoporphyrin ring [Biosynthesis of cofactors,
           prosthetic groups, and carriers, Chlorophyll and
           bacteriochlorphyll].
          Length = 1224

 Score = 27.8 bits (62), Expect = 10.0
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 198 YSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTD 234
           Y  W+ +R  C      RV LL   K LL  +  H D
Sbjct: 224 YLAWYKKREGCRAPKAPRVGLLLLRKHLLTENQAHYD 260


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.136    0.433 

Gapped
Lambda     K      H
   0.267   0.0873    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,797,995
Number of extensions: 1457490
Number of successful extensions: 1077
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1073
Number of HSP's successfully gapped: 18
Length of query: 308
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 211
Effective length of database: 6,635,264
Effective search space: 1400040704
Effective search space used: 1400040704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.2 bits)