RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15070
         (308 letters)



>d1umha_ b.18.1.21 (A:) F-box only protein 2 {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 184

 Score =  188 bits (480), Expect = 2e-60
 Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 23/197 (11%)

Query: 92  FNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKITKDS 151
             RNL++NPCG++    W  + +GG+GWKVE  P     E     DD++           
Sbjct: 10  RRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPGDNGVE--FTQDDSV----------- 56

Query: 152 KKATSSTNTESCFVTSYGRCSKQQWIDLGKRKTMLDVIERLNPAIVYSEWFCRRFDCGGR 211
                    +  F +S+  C K Q IDL       ++++   PAIV  +W+  R D G  
Sbjct: 57  ---------KKYFASSFEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSL 107

Query: 212 YDLRVALLNEAKKLLA-YHIHHTDIGENFKWQKVENKFENYPSGVRYILFIHEGVDSQFW 270
           Y+L V LL+E + +LA +      + E+  W ++ + F +Y  GVR++ F H G DS +W
Sbjct: 108 YELTVRLLSENEDVLAEFATGQVAVPEDGSWMEISHTFIDYGPGVRFVRFEHGGQDSVYW 167

Query: 271 QGHYGPKMTRATVFLIP 287
           +G +G ++T ++V++ P
Sbjct: 168 KGWFGARVTNSSVWVEP 184


>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 41

 Score = 39.6 bits (93), Expect = 1e-05
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 20 FPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL 56
           PDE+L  I   + +  LL    VCK+W  L   + L
Sbjct: 4  LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40


>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 100

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 13/81 (16%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 20 FPDEVLEVILVHMEIRTLLASRRVCKKWKSLI-ETQVLKERAILEGFTRGLTNEDKMNVE 78
           P E+   I  +++   ++ S  V + W  +I ++  L ++ ++          + +N++
Sbjct: 9  LPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLK 68

Query: 79 WTTWYLMLSPNSLFNRNLVKN 99
           +  Y  LS       + ++N
Sbjct: 69 LSQKYPKLSQQDRLRLSFLEN 89


>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing
          protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 102

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 19 YFPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVL 56
            P E+   +L  +E + LL + + C+ W+ L E  +L
Sbjct: 21 LLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 58


>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1
          (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 20 FPDEVLEVILVHMEIRTLLASRRVCKKWKSLIETQVLKERAILEGFTRGLTNEDKMNVEW 79
            D + E IL +++ ++L A+  VCK+W  +    +L ++ I         +  +   E 
Sbjct: 18 GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRT--DSLWRGLAER 75

Query: 80 TTWYLMLSPNSLFNRN 95
            W   L  N   + N
Sbjct: 76 RGWGQYLFKNKPPDGN 91


>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate
           phosphoribosyltransferase EF2626 {Enterococcus faecalis
           [TaxId: 1351]}
          Length = 137

 Score = 27.9 bits (62), Expect = 0.77
 Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 2/92 (2%)

Query: 184 TMLDVIERLNPA--IVYSEWFCRRFDCGGRYDLRVALLNEAKKLLAYHIHHTDIGENFKW 241
            M+     L  A      E + R       Y +   L      L       +DI    + 
Sbjct: 17  NMMQTYWELGRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTESDIAYLREV 76

Query: 242 QKVENKFENYPSGVRYILFIHEGVDSQFWQGH 273
           ++    F  Y +   +   +   ++      +
Sbjct: 77  EEYPEDFLTYLANFEFKCTVRSALEGDLVFNN 108


>d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium
           tetanomorphum [TaxId: 1553]}
          Length = 253

 Score = 28.4 bits (63), Expect = 1.1
 Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 3/43 (6%)

Query: 235 IGENFKW---QKVENKFENYPSGVRYILFIHEGVDSQFWQGHY 274
           IG  F        +       +   + L I   +D +  Q   
Sbjct: 83  IGAAFDVDIKAMADYIQTLAEAAKPFHLRIEGPMDVEDRQKQM 125


>d2b67a1 d.90.1.1 (A:1-201) Hypothetical oxidoreductase SP0622
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 201

 Score = 27.3 bits (59), Expect = 1.9
 Identities = 12/118 (10%), Positives = 33/118 (27%), Gaps = 6/118 (5%)

Query: 32  MEIRTLLASRRVCKKWKS-LIETQVLKERAILEGFTRGLTNEDKMNVEWTTWYLMLSPNS 90
           M+   L   R   K +   L++ + ++    +E  T   +     N +   + ++   N+
Sbjct: 1   MKFLELNKKRHATKHFTDKLVDPKDVRT--AIEIATLAPS---AHNSQPWKFVVVREKNA 55

Query: 91  LFNRNLVKNPCGQDKFNSWEILNNGGNGWKVETPPFGLSQEAQPLPDDTIPSYWTKIT 148
              +    +   Q       I                    A    ++ +  +   + 
Sbjct: 56  ELAKLAYGSNFEQVSSAPVTIALFTDTDLAKRARKIARVGGANNFSEEQLQYFMKNLP 113


>d1x75a1 e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia coli
          [TaxId: 562]}
          Length = 132

 Score = 24.6 bits (53), Expect = 10.0
 Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 1/20 (5%)

Query: 57 KERA-ILEGFTRGLTNEDKM 75
          ++RA ILE     L N D +
Sbjct: 12 RDRAHILEALAVALANIDPI 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.433 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,237,252
Number of extensions: 57356
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 10
Length of query: 308
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,240,546
Effective search space: 276641758
Effective search space used: 276641758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)