BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15072
(97 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P68202|RS27A_PLUXY Ubiquitin-40S ribosomal protein S27a OS=Plutella xylostella PE=2
SV=2
Length = 155
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/37 (89%), Positives = 33/37 (89%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
VDENGKIHRLRRECTSEQCGAGVFMA M DRHYCG
Sbjct: 107 KVDENGKIHRLRRECTSEQCGAGVFMAVMEDRHYCGK 143
>sp|P29504|RS27A_MANSE Ubiquitin-40S ribosomal protein S27a OS=Manduca sexta PE=2 SV=2
Length = 155
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/42 (78%), Positives = 35/42 (83%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSL 50
VDENGKIHRLRRECT EQCGAGVFMA M DRHYCG S++
Sbjct: 107 KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTM 148
>sp|P68203|RS27A_SPOFR Ubiquitin-40S ribosomal protein S27a OS=Spodoptera frugiperda PE=2
SV=2
Length = 156
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/42 (78%), Positives = 35/42 (83%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSL 50
VDENGKIHRLRRECT EQCGAGVFMA M DRHYCG S++
Sbjct: 107 KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTM 148
>sp|P15357|RS27A_DROME Ubiquitin-40S ribosomal protein S27a OS=Drosophila melanogaster
GN=RpS27A PE=1 SV=2
Length = 156
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/37 (81%), Positives = 30/37 (81%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
VDENGKIHRLRREC E CGAGVFMAA DRHYCG
Sbjct: 107 KVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGK 143
>sp|P68200|RS27A_ICTPU Ubiquitin-40S ribosomal protein S27a OS=Ictalurus punctatus
GN=rps27a PE=2 SV=2
Length = 156
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 32/37 (86%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
VDENGKIHRLRREC +++CGAGVFMA+ DRHYCG
Sbjct: 107 KVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGK 143
>sp|P79781|RS27A_CHICK Ubiquitin-40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A
PE=2 SV=3
Length = 156
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/37 (78%), Positives = 31/37 (83%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
VDENGKI RLRREC SE+CGAGVFMA+ DRHYCG
Sbjct: 107 KVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGK 143
>sp|P62979|RS27A_HUMAN Ubiquitin-40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1
SV=2
Length = 156
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 31/37 (83%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
VDENGKI RLRREC S++CGAGVFMA+ DRHYCG
Sbjct: 107 KVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGK 143
>sp|P62978|RS27A_CAVPO Ubiquitin-40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A
PE=1 SV=2
Length = 156
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 31/37 (83%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
VDENGKI RLRREC S++CGAGVFMA+ DRHYCG
Sbjct: 107 KVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGK 143
>sp|P62992|RS27A_BOVIN Ubiquitin-40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=1
SV=2
Length = 156
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 31/37 (83%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
VDENGKI RLRREC S++CGAGVFMA+ DRHYCG
Sbjct: 107 KVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGK 143
>sp|P14799|RS27A_NEUCR Ubiquitin-40S ribosomal protein S27a OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=ubi-3 PE=1 SV=4
Length = 154
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/36 (75%), Positives = 29/36 (80%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCG 44
VD +GKI RLRREC +E CGAGVFMAAM DR YCG
Sbjct: 107 KVDSDGKIERLRRECPNETCGAGVFMAAMQDRQYCG 142
>sp|P62982|RS27A_RAT Ubiquitin-40S ribosomal protein S27a OS=Rattus norvegicus GN=Rps27a
PE=1 SV=2
Length = 156
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 30/37 (81%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
VDENGKI RLRREC S++CGAGVFM + DRHYCG
Sbjct: 107 KVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGK 143
>sp|P62983|RS27A_MOUSE Ubiquitin-40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=1
SV=2
Length = 156
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 30/37 (81%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
VDENGKI RLRREC S++CGAGVFM + DRHYCG
Sbjct: 107 KVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGK 143
>sp|P37164|RS27A_CAEBR Ubiquitin-like protein 1-40S ribosomal protein S27a
OS=Caenorhabditis briggsae GN=ubl-1 PE=1 SV=2
Length = 163
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 33/49 (67%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELKSA 57
VDENGKI RLR+EC CG GVFMA ++RHYCG +L V+ +A
Sbjct: 101 KVDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVDTATA 149
>sp|P37165|RS27A_CAEEL Ubiquitin-like protein 1-40S ribosomal protein S27a
OS=Caenorhabditis elegans GN=ubl-1 PE=1 SV=2
Length = 163
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELKSA 57
+DENGKI RLR+EC CG GVFMA ++RHYCG +L V+ +A
Sbjct: 101 KIDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVDTATA 149
>sp|P14797|RS27A_DICDI Ubiquitin-40S ribosomal protein S27a OS=Dictyostelium discoideum
GN=ubqC PE=1 SV=2
Length = 154
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 30/40 (75%)
Query: 11 DENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSL 50
DENGKI R+ REC +E CGAGVFMA ++R YCG S+L
Sbjct: 110 DENGKIKRVLRECPAETCGAGVFMAQHANRQYCGKCHSTL 149
>sp|P59272|RS27A_DAUCA Ubiquitin-40S ribosomal protein S27a (Fragment) OS=Daucus carota
PE=2 SV=2
Length = 143
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 6 QVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
Q VDE+GK+ RLR+EC + +CGAG FMA DRHYCG
Sbjct: 104 QFYKVDESGKVQRLRKECPNGECGAGTFMANHFDRHYCGK 143
>sp|P47905|RS27A_LUPAL Ubiquitin-40S ribosomal protein S27a OS=Lupinus albus PE=3 SV=2
Length = 155
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 6 QVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
Q VD++GK+ RLR+EC + +CGAG FMA DRHYCG
Sbjct: 104 QFYKVDDSGKVQRLRKECPNTECGAGTFMANHFDRHYCGK 143
>sp|P62981|RS27A_SOLTU Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3
PE=2 SV=2
Length = 156
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 6 QVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
Q VD+ GK+ RLR+EC + +CGAG FMA DRHYCG
Sbjct: 104 QFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGK 143
>sp|P62980|RS27A_SOLLC Ubiquitin-40S ribosomal protein S27a OS=Solanum lycopersicum
GN=UBI3 PE=3 SV=2
Length = 156
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 6 QVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
Q VD+ GK+ RLR+EC + +CGAG FMA DRHYCG
Sbjct: 104 QFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGK 143
>sp|P31753|RS27A_ASPOF Ubiquitin-40S ribosomal protein S27a (Fragment) OS=Asparagus
officinalis PE=3 SV=2
Length = 118
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 6 QVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
Q VD+ GK+ RLR+EC + +CGAG FMA DRHYCG
Sbjct: 68 QFYKVDDTGKVIRLRKECPNAECGAGTFMANHKDRHYCGK 107
>sp|P59232|R27AB_ARATH Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana
GN=RPS27AB PE=1 SV=2
Length = 157
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 6 QVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
Q VD +GK+ RLR+EC + CGAG FMA+ DRHYCG
Sbjct: 104 QFYKVDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGK 143
>sp|P59233|R27AC_ARATH Ubiquitin-40S ribosomal protein S27a-3 OS=Arabidopsis thaliana
GN=RPS27AC PE=1 SV=2
Length = 157
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 6 QVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
Q +D +GK+ RLR+EC + CGAG FMA+ DRHYCG
Sbjct: 104 QFYKIDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGK 143
>sp|P27923|RS27A_MAIZE Ubiquitin-40S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=2 SV=2
Length = 155
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 11 DENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
D GK+ RLR+EC + +CGAGVFMA DRHYCG
Sbjct: 110 DATGKVTRLRKECPNTECGAGVFMANHFDRHYCGK 144
>sp|P59271|R27AA_ARATH Ubiquitin-40S ribosomal protein S27a-1 OS=Arabidopsis thaliana
GN=RPS27AA PE=1 SV=2
Length = 156
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 6 QVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
Q VD +GK+ RL++EC S CG G FMA+ DRHYCG
Sbjct: 104 QFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGK 143
>sp|Q9ARZ9|R27AA_ORYSJ Ubiquitin-40S ribosomal protein S27a-1 OS=Oryza sativa subsp.
japonica GN=RPS27AA PE=2 SV=1
Length = 155
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 11 DENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
D GK+ RLR+EC + +CGAG FMA DRHYCG
Sbjct: 110 DATGKVTRLRKECPNAECGAGTFMANHFDRHYCGK 144
>sp|P51431|R27AB_ORYSJ Ubiquitin-40S ribosomal protein S27a-2 OS=Oryza sativa subsp.
japonica GN=RPS27AB PE=2 SV=3
Length = 155
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 11 DENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCG 44
D GK+ RLR+EC + CGAG FMA DRHYCG
Sbjct: 110 DATGKVTRLRKECPNNDCGAGTFMANHFDRHYCG 143
>sp|P0CG87|RS272_HORVU Ubiquitin-40S ribosomal protein S27a OS=Hordeum vulgare GN=MUB2
PE=3 SV=1
Length = 155
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%)
Query: 11 DENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
D GK+ RLR+EC + CGAG FMA DRHYCG
Sbjct: 110 DSTGKVTRLRKECPNADCGAGTFMANHFDRHYCGK 144
>sp|P05759|RS27A_YEAST Ubiquitin-40S ribosomal protein S31 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPS31 PE=1 SV=3
Length = 152
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
VD GK+ +LRREC++ CGAGVF+A DR YCG
Sbjct: 107 KVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGK 143
>sp|P0CG86|RS271_HORVU Ubiquitin-40S ribosomal protein S27a OS=Hordeum vulgare GN=MUB1
PE=3 SV=1
Length = 155
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%)
Query: 11 DENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
D GK+ RLR+EC + CGAG FMA DRHYCG
Sbjct: 110 DATGKVTRLRKECPNADCGAGTFMANHFDRHYCGK 144
>sp|P69061|RS27A_KLULA Ubiquitin-40S ribosomal protein S27a OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=ubi3 PE=1 SV=2
Length = 150
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVE 53
VD+ GK+ +LR+EC + CG G+F+A DR YCG S+ + +
Sbjct: 107 KVDDEGKVAKLRKECPN--CGPGIFLANHGDRFYCGKCHSTFATQ 149
>sp|P0C8R3|RS27B_SCHPO Ubiquitin-40S ribosomal protein S27b OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubi5 PE=1 SV=2
Length = 150
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVE 53
V+++G + RLRREC + CGA FMA DR YCG +L +E
Sbjct: 107 KVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLTLKLE 149
>sp|P0C016|RS27A_SCHPO Ubiquitin-40S ribosomal protein S27a OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubi3 PE=1 SV=2
Length = 150
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVE 53
V+++G + RLRREC + CGA FMA DR YCG +L +E
Sbjct: 107 KVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLTLKLE 149
>sp|A2SR71|RS27A_METLZ 30S ribosomal protein S27ae OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rps27ae PE=3 SV=1
Length = 60
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 9 NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
VD GK R C +CGAGVFM DR CG
Sbjct: 18 TVDAQGKATTSHRAC--PRCGAGVFMGEHKDRFSCGK 52
>sp|Q8U443|RS27A_PYRFU 30S ribosomal protein S27ae OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rps27ae PE=1 SV=1
Length = 50
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 1 MSNEWQVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
M +W++ + ++GK+ R + C +CG GVFMA DR CG
Sbjct: 1 MGQKWKLYEI-KDGKVIRKNKFCP--RCGPGVFMADHGDRWACGK 42
>sp|P61239|RS27A_PYRHO 30S ribosomal protein S27ae OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps27ae PE=3 SV=1
Length = 50
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 1 MSNEWQVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
M +W++ + ++GK+ R + C +CG GVFMA DR CG
Sbjct: 1 MGQKWKL-YIVKDGKVIRKNKFCP--RCGPGVFMADHGDRWACGK 42
>sp|P61238|RS27A_PYRAB 30S ribosomal protein S27ae OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rps27ae PE=3 SV=2
Length = 51
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 1 MSNEWQVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCG 44
M +W++ + ++GK+ R + C +CG GVFMA DR CG
Sbjct: 1 MGQKWKL-YIVKDGKVIRKNKFCP--RCGPGVFMADHGDRWACG 41
>sp|A0RUP3|RS27A_CENSY 30S ribosomal protein S27ae OS=Cenarchaeum symbiosum (strain A)
GN=rps27ae PE=3 SV=1
Length = 55
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 12 ENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
E+GK +LR C+ +CG G FMA DR CG
Sbjct: 16 EDGKTVKLRHICS--RCGKGFFMAQHKDRRSCGK 47
>sp|A4FZ57|RS27A_METM5 30S ribosomal protein S27ae OS=Methanococcus maripaludis (strain
C5 / ATCC BAA-1333) GN=rps27ae PE=3 SV=1
Length = 67
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 12 ENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
E + RL++ C +CGAGVFMA +R CG
Sbjct: 20 EGNTVERLKKACP--KCGAGVFMAEHLNRFACGK 51
>sp|P54031|RS27A_METJA 30S ribosomal protein S27ae OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=rps27ae PE=3 SV=1
Length = 60
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 12 ENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
E K+ RL++ C +CG GVFMA +R+ CG
Sbjct: 16 EGDKVIRLKKTCP--RCGPGVFMAEHLNRYACGK 47
>sp|Q5JIY9|RS27A_PYRKO 30S ribosomal protein S27ae OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=rps27ae PE=3 SV=1
Length = 57
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 2 SNEWQVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCG 44
S +W++ V + GK+ R + C +CG GVFMA DR CG
Sbjct: 9 SQKWKLYEV-KGGKVVRKNKFCP--RCGPGVFMANHKDRWSCG 48
>sp|Q2NGN5|RS27A_METST 30S ribosomal protein S27ae OS=Methanosphaera stadtmanae (strain
DSM 3091) GN=rps27ae PE=3 SV=1
Length = 51
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 1 MSNEWQVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCG 44
MS ++++ V ++GKI R EC +C G+FMA DR+ CG
Sbjct: 1 MSKKYELYEV-KDGKIVRKNPECV--RCSHGIFMADHGDRYACG 41
>sp|A6VJ78|RS27A_METM7 30S ribosomal protein S27ae OS=Methanococcus maripaludis (strain
C7 / ATCC BAA-1331) GN=rps27ae PE=3 SV=1
Length = 67
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 12 ENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCG 44
E + RL++ C +CGAGVFMA +R CG
Sbjct: 20 EGNAVERLKKACP--KCGAGVFMAEHLNRFACG 50
>sp|Q9HJ78|RS27A_THEAC 30S ribosomal protein S27ae OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rps27ae PE=1 SV=1
Length = 55
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 13 NGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
+GK+ R R C +CG GVF+A +DR+ CG
Sbjct: 11 DGKLVRKHRFCP--RCGPGVFLAEHADRYSCGR 41
>sp|Q97BH4|RS27A_THEVO 30S ribosomal protein S27ae OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=rps27ae PE=3 SV=1
Length = 55
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 13 NGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELKSARS 59
+GK+ R R C +CG GVF+A +DR CG + ++K A+S
Sbjct: 11 DGKLVRKHRFCP--RCGPGVFLAEHADRFTCGRCGYTEFKKVKKAKS 55
>sp|A6US53|RS27A_METVS 30S ribosomal protein S27ae OS=Methanococcus vannielii (strain SB
/ ATCC 35089 / DSM 1224) GN=rps27ae PE=3 SV=1
Length = 71
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 12 ENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
E + R ++ C +CGAGVFMA +R+ CG
Sbjct: 24 EGNSVTRTKKACP--KCGAGVFMAEHLNRYACGK 55
>sp|Q6M029|RS27A_METMP 30S ribosomal protein S27ae OS=Methanococcus maripaludis (strain
S2 / LL) GN=rps27ae PE=3 SV=1
Length = 67
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 12 ENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
E + RL++ C +CGAGVFMA +R CG
Sbjct: 20 EGNTVERLKKVCP--KCGAGVFMAEHLNRFACGK 51
>sp|A9A6I9|RS27A_METM6 30S ribosomal protein S27ae OS=Methanococcus maripaludis (strain
C6 / ATCC BAA-1332) GN=rps27ae PE=3 SV=1
Length = 67
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 12 ENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45
E + RL++ C +CGAGVFMA +R CG
Sbjct: 20 EGNTVERLKKVCP--KCGAGVFMAEHLNRFACGK 51
>sp|Q2FWX8|Y2143_STAA8 Uncharacterized protein SAOUHSC_02143 OS=Staphylococcus aureus
(strain NCTC 8325) GN=SAOUHSC_02143 PE=3 SV=1
Length = 342
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 10 VDENGKIHRLRRECTSEQCGAGVFMAAMSDRHY 42
+D+NG++H L + C S + G G +++ D+ Y
Sbjct: 68 IDDNGELHLLNK-CLSSKAGTGCYVSISEDKRY 99
>sp|Q6GFD5|Y2014_STAAR Uncharacterized protein SAR2014 OS=Staphylococcus aureus (strain
MRSA252) GN=SAR2014 PE=3 SV=1
Length = 342
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 10 VDENGKIHRLRRECTSEQCGAGVFMAAMSDRHY 42
+D+NG++H L + C S + G G +++ D+ Y
Sbjct: 68 IDDNGELHLLNK-CLSSKAGTGCYVSISEDKRY 99
>sp|Q5HEJ8|Y1985_STAAC Uncharacterized protein SACOL1985 OS=Staphylococcus aureus
(strain COL) GN=SACOL1985 PE=3 SV=1
Length = 342
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 10 VDENGKIHRLRRECTSEQCGAGVFMAAMSDRHY 42
+D+NG++H L + C S + G G +++ D+ Y
Sbjct: 68 IDDNGELHLLNK-CLSSKAGTGCYVSISEDKRY 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,878,234
Number of Sequences: 539616
Number of extensions: 1078115
Number of successful extensions: 2583
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2548
Number of HSP's gapped (non-prelim): 77
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)