Query psy15072
Match_columns 97
No_of_seqs 115 out of 228
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 19:43:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_f 40S ribosomal protein S 100.0 1.7E-30 5.7E-35 186.4 2.2 51 3-53 101-151 (152)
2 3j20_Y 30S ribosomal protein S 99.9 3.8E-25 1.3E-29 136.2 3.6 49 1-52 1-49 (50)
3 2xzm_9 RPS31E; ribosome, trans 99.9 1.3E-25 4.3E-30 168.1 1.7 56 3-60 96-151 (189)
4 2k4x_A 30S ribosomal protein S 99.9 3.8E-25 1.3E-29 138.4 0.1 54 3-59 2-55 (55)
5 2zkr_2 60S ribosomal protein L 97.8 4.2E-06 1.4E-10 58.1 0.6 31 18-53 14-44 (97)
6 3j21_g 50S ribosomal protein L 94.0 0.017 5.9E-07 35.5 1.2 27 19-51 13-39 (51)
7 1l1o_C Replication protein A 7 93.1 0.38 1.3E-05 34.2 7.1 70 5-90 24-99 (181)
8 4gop_C Putative uncharacterize 89.5 0.95 3.2E-05 35.6 6.6 41 6-49 290-336 (444)
9 3u50_C Telomerase-associated p 89.3 0.43 1.5E-05 34.7 4.2 64 7-90 25-95 (172)
10 1vq8_Z 50S ribosomal protein L 88.8 0.31 1.1E-05 32.0 2.8 30 20-51 27-56 (83)
11 2jmo_A Parkin; IBR, E3 ligase, 86.9 0.22 7.4E-06 31.6 1.2 34 20-53 25-63 (80)
12 3h0g_I DNA-directed RNA polyme 83.6 0.67 2.3E-05 31.1 2.4 32 21-54 5-40 (113)
13 3plu_A Ubiquitin-like modifier 83.0 0.26 9E-06 33.0 0.2 17 56-72 50-66 (93)
14 1vk6_A NADH pyrophosphatase; 1 81.3 0.98 3.3E-05 33.9 2.8 35 19-55 106-140 (269)
15 1twf_I B12.6, DNA-directed RNA 80.5 0.43 1.5E-05 32.5 0.6 31 21-53 5-39 (122)
16 3qt1_I DNA-directed RNA polyme 79.3 0.54 1.8E-05 33.0 0.8 29 21-53 25-59 (133)
17 1pft_A TFIIB, PFTFIIBN; N-term 78.5 0.77 2.6E-05 26.4 1.1 29 21-51 6-35 (50)
18 3rt3_B Ubiquitin-like protein 77.3 0.33 1.1E-05 32.5 -0.8 61 4-73 59-127 (159)
19 3j21_e 50S ribosomal protein L 77.3 1 3.6E-05 28.8 1.6 24 20-48 17-40 (62)
20 2ct7_A Ring finger protein 31; 76.4 1.3 4.6E-05 27.9 2.0 32 20-53 25-56 (86)
21 3cng_A Nudix hydrolase; struct 76.3 1.7 5.8E-05 29.5 2.6 30 20-51 3-36 (189)
22 1vq8_1 50S ribosomal protein L 75.3 1.4 4.6E-05 27.9 1.7 24 20-48 17-40 (57)
23 4efo_A Serine/threonine-protei 74.7 0.68 2.3E-05 31.0 0.2 36 56-91 42-89 (94)
24 3cc2_Z 50S ribosomal protein L 74.5 2.2 7.7E-05 30.0 2.8 30 20-51 60-89 (116)
25 2kj6_A Tubulin folding cofacto 74.3 1 3.5E-05 29.4 1.0 15 60-74 49-63 (97)
26 4b6w_A Tubulin-specific chaper 74.0 0.9 3.1E-05 28.8 0.7 16 58-73 35-50 (86)
27 2kjr_A CG11242; UBL, ubiquitin 73.2 1.1 3.9E-05 28.9 1.0 15 60-74 50-64 (95)
28 2lxa_A Ubiquitin-like protein 70.7 1.5 5.1E-05 28.0 1.1 16 58-73 35-50 (87)
29 1ffk_W Ribosomal protein L37AE 69.7 2.4 8.2E-05 27.5 1.9 32 17-50 24-55 (73)
30 2zjr_Z 50S ribosomal protein L 69.3 2.5 8.6E-05 26.1 1.9 22 20-48 30-51 (60)
31 2js4_A UPF0434 protein BB2007; 69.1 3.8 0.00013 25.9 2.8 32 22-55 10-41 (70)
32 1dl6_A Transcription factor II 68.7 2.9 9.7E-05 25.3 2.0 29 22-52 13-42 (58)
33 4a17_Y RPL37A, 60S ribosomal p 68.4 3.8 0.00013 28.3 2.9 30 19-51 35-65 (103)
34 1nui_A DNA primase/helicase; z 68.3 3.2 0.00011 30.0 2.6 32 13-49 8-42 (255)
35 3j21_i 50S ribosomal protein L 66.3 3.8 0.00013 27.2 2.4 30 20-51 35-64 (83)
36 2pk7_A Uncharacterized protein 66.2 3.9 0.00013 25.8 2.4 32 22-55 10-41 (69)
37 4a18_A RPL37, ribosomal protei 66.0 2.9 0.0001 28.7 1.9 25 20-49 16-40 (94)
38 2jny_A Uncharacterized BCR; st 65.9 4.1 0.00014 25.6 2.4 32 22-55 12-43 (67)
39 1wju_A NEDD8 ultimate buster-1 65.3 1.8 6.2E-05 28.9 0.7 14 60-73 52-65 (100)
40 3v2d_5 50S ribosomal protein L 64.7 3.6 0.00012 25.5 1.9 22 20-48 30-51 (60)
41 2jr6_A UPF0434 protein NMA0874 63.9 4.9 0.00017 25.3 2.5 32 22-55 10-41 (68)
42 1uh6_A Ubiquitin-like 5; beta- 63.7 1.5 5.2E-05 29.3 0.1 17 57-73 58-74 (100)
43 2hf1_A Tetraacyldisaccharide-1 63.4 4.9 0.00017 25.2 2.4 32 22-55 10-41 (68)
44 3iz5_l 60S ribosomal protein L 62.6 2.9 9.9E-05 28.7 1.3 25 20-49 16-40 (94)
45 3jyw_9 60S ribosomal protein L 61.5 2.9 9.8E-05 27.1 1.1 29 19-50 25-54 (72)
46 3iz5_m 60S ribosomal protein L 61.3 4 0.00014 27.6 1.9 29 20-51 36-65 (92)
47 4ajy_B Transcription elongatio 60.8 2 6.7E-05 29.8 0.2 13 61-73 35-47 (118)
48 2kk8_A Uncharacterized protein 60.2 2.1 7.1E-05 26.6 0.2 16 58-73 41-56 (84)
49 2dkt_A Ring finger and CHY zin 60.0 4.6 0.00016 29.0 2.1 26 15-48 66-91 (143)
50 3izc_m 60S ribosomal protein R 60.0 4.2 0.00014 27.5 1.8 30 19-51 35-65 (92)
51 3phx_B Ubiquitin-like protein 58.7 2.3 7.8E-05 25.1 0.2 18 56-73 33-50 (79)
52 4ayb_P DNA-directed RNA polyme 58.6 1.7 5.9E-05 26.7 -0.3 30 40-69 3-32 (48)
53 1twf_I B12.6, DNA-directed RNA 58.4 5.2 0.00018 27.0 2.0 41 18-60 70-120 (122)
54 1n0z_A ZNF265; zinc finger, RN 57.4 6.7 0.00023 22.8 2.1 26 20-49 14-39 (45)
55 1dx8_A Rubredoxin; electron tr 56.6 5.5 0.00019 25.2 1.8 21 34-54 1-21 (70)
56 1v6e_A Cytoskeleton-associated 56.3 2.6 8.8E-05 26.5 0.2 15 59-73 40-54 (95)
57 1t0y_A Tubulin folding cofacto 54.1 4.3 0.00015 26.8 1.0 16 59-74 39-54 (122)
58 4eew_A Large proline-rich prot 53.0 3.2 0.00011 25.0 0.2 16 58-73 48-63 (88)
59 2fnj_B Transcription elongatio 52.0 3.4 0.00012 28.4 0.2 14 60-73 34-47 (118)
60 2uyz_B Small ubiquitin-related 51.7 3.5 0.00012 24.3 0.2 15 59-73 35-49 (79)
61 2kan_A Uncharacterized protein 51.6 4.7 0.00016 25.4 0.9 15 59-73 46-60 (94)
62 2a15_A Hypothetical protein RV 50.1 10 0.00035 23.5 2.3 18 6-23 111-128 (139)
63 4dwf_A HLA-B-associated transc 49.6 3.9 0.00013 24.7 0.2 17 57-73 35-51 (90)
64 3h0g_L DNA-directed RNA polyme 48.8 2.9 0.0001 26.4 -0.4 10 41-50 39-48 (63)
65 1oh0_A Steroid delta-isomerase 48.4 11 0.00039 22.7 2.3 19 5-23 102-120 (131)
66 4a20_A Ubiquitin-like protein 47.7 5.4 0.00018 25.9 0.7 15 59-73 54-68 (98)
67 2v3b_B Rubredoxin 2, rubredoxi 47.4 9 0.00031 23.1 1.6 25 40-66 3-27 (55)
68 1wgd_A Homocysteine-responsive 47.3 5.6 0.00019 24.4 0.7 12 62-73 46-57 (93)
69 2faz_A Ubiquitin-like containi 47.3 4.5 0.00015 23.6 0.2 16 58-73 35-50 (78)
70 1wxv_A BAG-family molecular ch 47.1 5.8 0.0002 24.3 0.7 16 58-73 42-57 (92)
71 2ztg_A Alanyl-tRNA synthetase; 47.1 8.6 0.00029 33.6 2.0 30 12-47 15-46 (739)
72 3u30_A Ubiquitin, linear DI-ub 46.9 2.9 9.7E-05 28.5 -0.8 60 4-73 75-142 (172)
73 1wyw_B Ubiquitin-like protein 46.9 4.6 0.00016 25.4 0.2 15 59-73 53-67 (97)
74 4fbj_B NEDD8; effector-HOST ta 45.4 4.7 0.00016 24.7 0.1 18 56-73 29-46 (88)
75 2hj8_A Interferon-induced 17 k 45.4 4.6 0.00016 24.7 0.1 16 58-73 35-50 (88)
76 1yk4_A Rubredoxin, RD; electro 45.0 12 0.0004 22.4 1.8 25 40-66 2-26 (52)
77 1ltl_A DNA replication initiat 45.0 24 0.00081 26.2 3.9 45 21-67 135-195 (279)
78 2zze_A Alanyl-tRNA synthetase; 44.6 9.6 0.00033 33.4 2.0 28 12-45 12-39 (752)
79 1wy8_A NP95-like ring finger p 44.3 7.2 0.00025 23.4 0.8 15 59-73 41-55 (89)
80 1wh3_A 59 kDa 2'-5'-oligoadeny 44.2 7.3 0.00025 23.1 0.9 16 58-73 38-53 (87)
81 3fac_A Putative uncharacterize 43.9 6.5 0.00022 25.5 0.6 15 39-53 66-80 (118)
82 2xzm_9 RPS31E; ribosome, trans 43.6 4.9 0.00017 29.6 0.0 18 56-73 29-46 (189)
83 3m62_B UV excision repair prot 43.3 5.9 0.0002 25.4 0.3 18 56-73 30-47 (106)
84 1twf_L ABC10-alpha, DNA-direct 43.1 9.5 0.00033 24.1 1.3 26 21-49 29-54 (70)
85 3er7_A Uncharacterized NTF2-li 42.6 16 0.00054 24.4 2.4 16 6-21 103-118 (131)
86 2kd0_A LRR repeats and ubiquit 42.4 7.2 0.00024 23.9 0.6 15 59-73 43-57 (85)
87 2kn9_A Rubredoxin; metalloprot 42.4 11 0.00037 24.7 1.5 18 39-56 26-43 (81)
88 4dbg_A Ranbp-type and C3HC4-ty 41.4 6.2 0.00021 26.5 0.2 14 59-72 58-71 (105)
89 2dzm_A FAS-associated factor 1 41.1 4.9 0.00017 26.4 -0.3 13 60-72 41-53 (100)
90 1ee8_A MUTM (FPG) protein; bet 40.8 11 0.00038 28.3 1.6 26 20-47 235-262 (266)
91 2xzf_A Formamidopyrimidine-DNA 40.7 11 0.00039 28.3 1.6 25 21-47 243-269 (271)
92 1k82_A Formamidopyrimidine-DNA 40.6 11 0.00039 28.3 1.6 26 20-47 240-267 (268)
93 3dbh_I NEDD8; cell cycle, acti 40.4 5.2 0.00018 23.7 -0.2 16 58-73 43-58 (88)
94 1e8j_A Rubredoxin; iron-sulfur 40.4 9.2 0.00032 22.8 0.9 26 40-67 3-28 (52)
95 4bbr_M Transcription initiatio 40.3 14 0.00047 28.7 2.1 32 20-53 21-55 (345)
96 1s24_A Rubredoxin 2; electron 40.2 13 0.00045 24.6 1.7 26 39-66 34-59 (87)
97 1wg2_A Zinc finger (AN1-like) 40.1 11 0.00036 24.0 1.2 20 21-44 30-51 (64)
98 3n3k_B Ubiquitin; hydrolase, p 39.8 6.9 0.00024 22.9 0.2 17 57-73 33-49 (85)
99 3u6p_A Formamidopyrimidine-DNA 39.0 12 0.00042 28.2 1.6 27 19-47 244-272 (273)
100 2dzi_A Ubiquitin-like protein 38.9 9.3 0.00032 22.1 0.7 16 58-73 38-53 (81)
101 1wd2_A Ariadne-1 protein homol 38.8 5.7 0.00019 24.1 -0.3 31 19-51 5-37 (60)
102 2vl6_A SSO MCM N-TER, minichro 38.7 29 0.001 25.3 3.6 44 22-67 143-208 (268)
103 2bwf_A Ubiquitin-like protein 38.4 7.5 0.00026 22.3 0.2 16 58-73 34-49 (77)
104 4rxn_A Rubredoxin; electron tr 38.4 15 0.00052 22.2 1.6 25 40-66 3-27 (54)
105 3m63_B Ubiquitin domain-contai 37.9 7.7 0.00026 24.7 0.3 18 56-73 56-73 (101)
106 1k3x_A Endonuclease VIII; hydr 37.8 13 0.00046 27.7 1.6 25 21-47 235-261 (262)
107 2l7r_A Ubiquitin-like protein 37.8 7.2 0.00025 24.2 0.1 14 60-73 50-63 (93)
108 2lk0_A RNA-binding protein 5; 37.6 17 0.00057 19.5 1.6 22 21-48 6-27 (32)
109 1ndd_A NEDD8, protein (ubiquit 37.2 8.1 0.00028 21.9 0.2 16 58-73 31-46 (76)
110 3mtn_B UBA80, ubcep1, ubiquiti 37.0 7.6 0.00026 22.7 0.1 16 57-72 33-48 (85)
111 4hcn_B Polyubiquitin, ubiquiti 36.6 7.7 0.00026 24.2 0.1 17 57-73 52-68 (98)
112 2kpi_A Uncharacterized protein 36.4 30 0.001 20.7 2.7 30 22-55 12-43 (56)
113 3v6c_B Ubiquitin; structural g 36.3 7.9 0.00027 23.6 0.1 16 58-73 48-63 (91)
114 1v5t_A 8430435I17RIK protein; 36.3 11 0.00037 23.3 0.7 13 59-71 39-51 (90)
115 3m7n_A Putative uncharacterize 35.3 22 0.00074 25.0 2.3 31 19-53 139-169 (179)
116 1wii_A Hypothetical UPF0222 pr 35.1 22 0.00077 23.2 2.2 30 22-53 25-60 (85)
117 1qyp_A RNA polymerase II; tran 34.9 59 0.002 18.7 3.8 29 20-50 15-53 (57)
118 1v5o_A 1700011N24RIK protein; 34.8 7.9 0.00027 24.4 -0.1 17 57-73 41-57 (102)
119 3l0w_B Monoubiquitinated proli 34.6 12 0.0004 26.1 0.8 17 57-73 30-46 (169)
120 1we7_A SF3A1 protein; structur 34.5 12 0.00043 24.0 0.8 15 59-73 67-81 (115)
121 1wfh_A Zinc finger (AN1-like) 34.3 14 0.00047 23.5 1.0 20 21-44 30-51 (64)
122 1sif_A Ubiquitin; hydrophobic 33.3 9.4 0.00032 23.3 0.1 17 57-73 39-55 (88)
123 1wgg_A Ubiquitin carboxyl-term 33.2 8 0.00027 24.4 -0.2 15 59-73 39-53 (96)
124 3k7a_M Transcription initiatio 33.2 14 0.0005 28.2 1.2 29 20-50 21-52 (345)
125 3irb_A Uncharacterized protein 32.7 25 0.00086 24.1 2.2 29 13-49 42-70 (145)
126 3vdz_A Ubiquitin-40S ribosomal 32.4 11 0.00036 24.3 0.2 15 59-73 67-81 (111)
127 1yqb_A Ubiquilin 3; structural 32.2 11 0.00037 23.9 0.2 15 59-73 53-67 (100)
128 1we6_A Splicing factor, putati 32.1 10 0.00034 24.2 0.1 15 59-73 63-77 (111)
129 3a9j_A Ubiquitin; protein comp 32.1 11 0.00037 21.3 0.2 16 58-73 31-46 (76)
130 1wfp_A Zinc finger (AN1-like) 31.8 15 0.00053 23.9 1.0 15 28-43 44-60 (74)
131 1ttn_A DC-UBP, dendritic cell- 31.7 15 0.0005 23.3 0.8 15 59-73 55-69 (106)
132 1x4w_A Hypothetical protein FL 31.6 9.7 0.00033 24.3 -0.1 18 22-43 34-53 (67)
133 1wx8_A Riken cDNA 4931431F19; 31.0 9.9 0.00034 23.3 -0.1 14 60-73 49-62 (96)
134 6rxn_A Rubredoxin; electron tr 30.6 30 0.001 20.2 2.0 16 39-54 3-18 (46)
135 1uel_A HHR23B, UV excision rep 30.3 16 0.00056 22.5 0.9 13 61-73 37-49 (95)
136 2wyq_A HHR23A, UV excision rep 29.9 13 0.00045 21.8 0.3 13 61-73 42-54 (85)
137 4esj_A Type-2 restriction enzy 29.6 13 0.00045 29.3 0.4 28 21-52 35-68 (257)
138 2klc_A Ubiquilin-1; ubiquitin- 29.6 13 0.00043 23.6 0.2 15 59-73 56-70 (101)
139 3b1l_X E3 ubiquitin-protein li 35.5 11 0.00039 21.6 0.0 20 54-73 27-46 (76)
140 1dvp_A HRS, hepatocyte growth 29.4 23 0.00077 25.3 1.6 29 21-53 162-190 (220)
141 2kdi_A Ubiquitin, vacuolar pro 28.6 13 0.00046 24.1 0.2 16 58-73 40-55 (114)
142 1wgh_A Ubiquitin-like 3, HCG-1 28.2 29 0.001 23.2 1.9 11 63-73 60-70 (116)
143 3bv6_A Metal-dependent hydrola 27.9 55 0.0019 24.7 3.6 28 61-89 55-85 (379)
144 3k9o_B Ubiquitin, UBB+1; E2-25 27.7 14 0.00049 22.3 0.2 17 57-73 31-47 (96)
145 3mso_A Steroid delta-isomerase 27.5 40 0.0014 22.1 2.4 15 6-20 100-114 (143)
146 1yx5_B Ubiquitin; proteasome, 27.5 15 0.00052 22.5 0.3 17 57-73 30-46 (98)
147 2jrp_A Putative cytoplasmic pr 27.0 45 0.0016 21.8 2.6 8 42-49 20-27 (81)
148 1qxf_A GR2, 30S ribosomal prot 26.7 62 0.0021 20.6 3.1 33 19-53 6-39 (66)
149 2odx_A Cytochrome C oxidase po 26.7 60 0.002 20.9 3.1 24 5-36 46-69 (80)
150 2jne_A Hypothetical protein YF 26.3 37 0.0013 23.4 2.1 56 14-80 23-83 (101)
151 1j8c_A Ubiquitin-like protein 26.0 21 0.0007 23.7 0.8 14 60-73 64-77 (125)
152 3k1f_M Transcription initiatio 26.0 31 0.0011 26.3 1.8 30 20-51 21-53 (197)
153 1se9_A Ubiquitin family; ubiqu 25.9 18 0.00061 25.0 0.5 13 61-73 56-70 (126)
154 2k1p_A Zinc finger RAN-binding 25.8 43 0.0015 17.9 2.0 22 21-48 7-28 (33)
155 1wx7_A Ubiquilin 3; ubiquitin- 25.2 22 0.00074 22.4 0.8 15 59-73 48-62 (106)
156 2gnr_A Conserved hypothetical 25.2 34 0.0012 23.7 1.8 29 13-49 42-70 (145)
157 1tfi_A Transcriptional elongat 25.0 1E+02 0.0035 17.9 3.7 30 19-50 8-47 (50)
158 3u5e_m 60S ribosomal protein L 24.9 15 0.00053 24.0 0.0 20 54-73 27-46 (128)
159 1wff_A Riken cDNA 2810002D23 p 24.2 22 0.00077 23.5 0.7 16 28-44 45-62 (85)
160 2dzj_A Synaptic glycoprotein S 23.9 14 0.00048 23.1 -0.3 13 61-73 48-60 (88)
161 1v54_F VI, cytochrome C oxidas 23.8 85 0.0029 20.8 3.5 17 32-48 70-87 (98)
162 3j20_W 30S ribosomal protein S 23.5 80 0.0027 19.9 3.2 34 18-53 13-47 (63)
163 1x1m_A Ubiquitin-like protein 23.4 26 0.0009 22.2 0.9 12 62-73 61-73 (107)
164 3f8x_A Putative delta-5-3-keto 23.0 53 0.0018 22.1 2.4 15 6-20 109-123 (148)
165 2aus_D NOP10, ribosome biogene 22.8 42 0.0014 20.9 1.8 8 40-47 17-24 (60)
166 2ojr_A Ubiquitin; lanthide-bin 22.3 27 0.00091 22.2 0.8 15 59-73 67-81 (111)
167 1v86_A DNA segment, CHR 7, way 22.1 8.6 0.0003 24.1 -1.6 14 59-72 48-61 (95)
168 1gh9_A 8.3 kDa protein (gene M 22.1 45 0.0015 21.1 1.8 29 23-55 7-35 (71)
169 3b08_A Polyubiquitin-C, ubiqui 21.9 21 0.00073 22.8 0.2 17 57-73 30-46 (152)
170 2wyl_A L-ascorbate-6-phosphate 21.6 79 0.0027 23.4 3.4 27 62-89 32-61 (360)
171 3h0n_A Uncharacterized protein 21.4 46 0.0016 23.8 2.0 24 20-44 145-170 (188)
172 3v2d_8 50S ribosomal protein L 20.6 43 0.0015 20.9 1.4 16 5-20 11-26 (65)
173 2apo_B Ribosome biogenesis pro 20.6 36 0.0012 21.1 1.1 20 21-48 7-26 (60)
174 3bk3_C Crossveinless 2, bone m 20.5 82 0.0028 19.3 2.7 30 13-46 34-65 (67)
175 3p2a_A Thioredoxin 2, putative 20.4 63 0.0022 20.1 2.3 30 20-51 5-36 (148)
176 2kdb_A Homocysteine-responsive 20.3 26 0.00087 22.6 0.4 12 62-73 61-73 (99)
177 3r8s_3 50S ribosomal protein L 20.1 43 0.0015 20.8 1.4 17 4-20 9-25 (64)
No 1
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.96 E-value=1.7e-30 Score=186.39 Aligned_cols=51 Identities=45% Similarity=0.845 Sum_probs=49.4
Q ss_pred ccceEEEECCCCeEEEecccCCCCcCCceEEeceeCCccccCCceeEEEee
Q psy15072 3 NEWQVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVE 53 (97)
Q Consensus 3 ~~LkyYkVdenGKI~rlrkeCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~ 53 (97)
++|+||+||+||||+|+|++||+++||+|||||+|+||+||||||+||+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 101 XVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVYKVN 151 (152)
T ss_dssp CCCCCSEECSSSCEECCSCBCCSTTSCSSSBEEECSSCEEESSSSSCCEEC
T ss_pred ceeeEEEEccCCeEEECcCcCCCccCCCceEecccCCCcccCCCceEEEec
Confidence 679999999999999999999999999999999999999999999999876
No 2
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.91 E-value=3.8e-25 Score=136.18 Aligned_cols=49 Identities=35% Similarity=0.708 Sum_probs=47.2
Q ss_pred CCccceEEEECCCCeEEEecccCCCCcCCceEEeceeCCccccCCceeEEEe
Q psy15072 1 MSNEWQVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSLSV 52 (97)
Q Consensus 1 M~~~LkyYkVdenGKI~rlrkeCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~ 52 (97)
|+.+|+||+|| ||||+|++++||+ ||+|+|||+|.||++|||||+|++.
T Consensus 1 m~~~l~~y~v~-~~kv~~~~k~CP~--CG~~~fm~~~~~R~~C~kCG~t~~~ 49 (50)
T 3j20_Y 1 MGQKWKLYEIK-DGKVIRKNKFCPR--CGPGVFMADHGDRWACGKCGYTEWK 49 (50)
T ss_dssp CCCCCCCCEEC-SSCEECSSEECSS--SCSSCEEEECSSEEECSSSCCEEEC
T ss_pred CCcceeEEEEE-CCEEEEecccCCC--CCCceEEecCCCeEECCCCCCEEEC
Confidence 88999999999 7999999999998 9999999999999999999999975
No 3
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.91 E-value=1.3e-25 Score=168.10 Aligned_cols=56 Identities=30% Similarity=0.708 Sum_probs=51.6
Q ss_pred ccceEEEECCCCeEEEecccCCCCcCCceEEeceeCCccccCCceeEEEeeccccccc
Q psy15072 3 NEWQVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELKSARSQ 60 (97)
Q Consensus 3 ~~LkyYkVdenGKI~rlrkeCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~~~~a~~q 60 (97)
++|+||+||+||||+|+|++||+ ||+|||||+|+||+||||||+||++++...+++
T Consensus 96 ~~Lk~y~Vd~~Gkv~~~~~~Cp~--Cg~g~fma~h~dR~~CGkC~~t~~~~~~~~~~~ 151 (189)
T 2xzm_9 96 GALAFYKLENNGKVSLQQKGCPK--CGPGIFMAKHYDRHYCGKCHLTLKIDXXXXXXX 151 (189)
T ss_dssp SCCCCEEEETTTEEEECSEECST--TCSSCEEEECSSCEEETTTCCCBCCHHHHHHHH
T ss_pred ceeeEEEECCCceEEEccccCCc--cCCCccccCccCCCccCCceeEEEeeccccccc
Confidence 57999999999999999999999 999999999999999999999999887655544
No 4
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=99.89 E-value=3.8e-25 Score=138.39 Aligned_cols=54 Identities=31% Similarity=0.577 Sum_probs=50.3
Q ss_pred ccceEEEECCCCeEEEecccCCCCcCCceEEeceeCCccccCCceeEEEeecccccc
Q psy15072 3 NEWQVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELKSARS 59 (97)
Q Consensus 3 ~~LkyYkVdenGKI~rlrkeCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~~~~a~~ 59 (97)
++|+||+||+ |||+|++++||+ ||+|+|||+|+||++|||||||++.+++++++
T Consensus 2 ~~~~~y~v~~-gki~~~~~fCPk--CG~~~~ma~~~dr~~C~kCgyt~~~~~~~~~~ 55 (55)
T 2k4x_A 2 QKRELYEIAD-GKLVRKHRFCPR--CGPGVFLAEHADRYSCGRCGYTEFKKAKKSKS 55 (55)
T ss_dssp CCCCCCCCCC-CCCCCSSCCCTT--TTTTCCCEECSSEEECTTTCCCEECCCCCCCC
T ss_pred ceEEEEEEcC-CEEEEccccCcC--CCCceeEeccCCEEECCCCCCEEEeCccccCC
Confidence 4899999997 999999999998 99999999999999999999999988777764
No 5
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=97.78 E-value=4.2e-06 Score=58.05 Aligned_cols=31 Identities=16% Similarity=0.420 Sum_probs=26.5
Q ss_pred EecccCCCCcCCceEEeceeCCccccCCceeEEEee
Q psy15072 18 RLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVE 53 (97)
Q Consensus 18 rlrkeCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~ 53 (97)
+.+..||+ ||.++| |.++.+||+|||+....
T Consensus 14 KtH~lCrR--CG~~sf---H~qK~~CgkCGYpa~k~ 44 (97)
T 2zkr_2 14 KTHTLCRR--CGSKAY---HLQKSTCGKCGYPAKRK 44 (97)
T ss_dssp CCEECCTT--TCSSCE---ETTSCCBTTTCTTTSSC
T ss_pred CCCCcCCC--CCCccC---cCccccCcccCCchHhc
Confidence 35668999 999998 99999999999986543
No 6
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.04 E-value=0.017 Score=35.51 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.3
Q ss_pred ecccCCCCcCCceEEeceeCCccccCCceeEEE
Q psy15072 19 LRRECTSEQCGAGVFMAAMSDRHYCGNKFSSLS 51 (97)
Q Consensus 19 lrkeCP~~eCGaGVFMA~H~DR~yCGKCg~T~~ 51 (97)
....||+ ||+= ++..-|.|.|||++..
T Consensus 13 ~k~iCpk--C~a~----~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 13 KKYVCLR--CGAT----NPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SEEECTT--TCCE----ECTTCSSCSSSSSCCC
T ss_pred CCccCCC--CCCc----CCCCceecCCCCCccc
Confidence 4567999 9983 7889999999999944
No 7
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=93.09 E-value=0.38 Score=34.23 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=44.8
Q ss_pred ceEEEECCCCeEEEecc------cCCCCcCCceEEeceeCCccccCCceeEEEeecccccccccCCCCceEEEEEeccee
Q psy15072 5 WQVCNVDENGKIHRLRR------ECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELKSARSQVRFPPGANFLTFVLGTAS 78 (97)
Q Consensus 5 LkyYkVdenGKI~rlrk------eCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~~~~a~~q~~~p~~~~~l~~~~~~~~ 78 (97)
=.||.|- +.|...+. .||.+.|.-=|-- ...++|.|-||+.++ |....+.++-+..+-
T Consensus 24 ~~~f~v~--atI~~i~~d~~~Y~aC~~~~CnKKv~~-~~~g~~~CekC~~~~-------------~~~~~ry~l~~~i~D 87 (181)
T 1l1o_C 24 PDYFSSV--ATVVYLRKENCMYQACPTQDCNKKVID-QQNGLYRCEKCDTEF-------------PNFKYRMILSVNIAD 87 (181)
T ss_dssp CEEEEEE--EEEEEECCSTTEEEBCCSTTCCCBCEE-ETTTEEEETTTTEEE-------------SSCCEEEEEEEEEEC
T ss_pred CcEEEEE--EEEEEEeCCCEEECCCCchhcCCcccc-CCCCeEECCCCCCcC-------------CCceEEEEEEEEEEe
Confidence 3577775 67777765 5999899885541 245689999998653 455666666554443
Q ss_pred eeeeeeeEEEec
Q psy15072 79 FLVSYPVLLFDS 90 (97)
Q Consensus 79 ~~~~~~~~~~~~ 90 (97)
.--+--+.+||.
T Consensus 88 ~Tg~~~~t~F~~ 99 (181)
T 1l1o_C 88 FQENQWVTCFQE 99 (181)
T ss_dssp SSCEEEEEEEHH
T ss_pred CCCCEEEEEEhH
Confidence 333445556654
No 8
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=89.46 E-value=0.95 Score=35.61 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=29.8
Q ss_pred eEEEECCCCeEEEecc------cCCCCcCCceEEeceeCCccccCCceeE
Q psy15072 6 QVCNVDENGKIHRLRR------ECTSEQCGAGVFMAAMSDRHYCGNKFSS 49 (97)
Q Consensus 6 kyYkVdenGKI~rlrk------eCP~~eCGaGVFMA~H~DR~yCGKCg~T 49 (97)
.||.|- +.|...+. .||.+.|+--|-- ...++|.|.||+.+
T Consensus 290 ~~~~v~--atI~~i~~~~~~Y~aC~~~~C~kkv~~-~~~g~~~C~~C~~~ 336 (444)
T 4gop_C 290 DYFNVR--ATVVYIKQENLYYTACASEGCNKKVNL-DHENNWRCEKCDRS 336 (444)
T ss_dssp EEEEEE--EEEEEECCTTCEEEECCSTTCCCBEEE-CTTSCEEETTTTEE
T ss_pred cEEEEE--EEEEEEcCCceEEccCCcccCCCcccc-CCCccEECCCCCCc
Confidence 567664 67777664 4998889986653 24568999999865
No 9
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=89.30 E-value=0.43 Score=34.74 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=40.8
Q ss_pred EEEECCCCeEEEeccc-------CCCCcCCceEEeceeCCccccCCceeEEEeecccccccccCCCCceEEEEEecceee
Q psy15072 7 VCNVDENGKIHRLRRE-------CTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELKSARSQVRFPPGANFLTFVLGTASF 79 (97)
Q Consensus 7 yYkVdenGKI~rlrke-------CP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~~~~a~~q~~~p~~~~~l~~~~~~~~~ 79 (97)
|| |- |.|...+.+ ||. |.--|. -.+.++|.|-||+.+ |....++++-+..+=.
T Consensus 25 ~f-v~--atI~~Ik~d~~~~Y~ACp~--CnKKV~-~~~~g~~~CekC~~~--------------~~~~~RYil~~~i~D~ 84 (172)
T 3u50_C 25 FY-VY--GNLVSIQMKNKLYYYRCTC--QGKSVL-KYHGDSFFCESCQQF--------------INPQVHLMLRAFVQDS 84 (172)
T ss_dssp EE-EE--EEEECCCCSSCCEEEECTT--SCCCEE-EETTTEEEETTTTEE--------------CCCEEEECEEEEEEET
T ss_pred EE-EE--EEEEEEcCCCcEEehhchh--hCCEee-eCCCCeEECCCCCCC--------------CCceEEEEEEEEEEeC
Confidence 66 64 567766555 998 998775 356789999999864 3445566555544433
Q ss_pred eeeeeeEEEec
Q psy15072 80 LVSYPVLLFDS 90 (97)
Q Consensus 80 ~~~~~~~~~~~ 90 (97)
--+.-+.+||.
T Consensus 85 TG~~wvt~F~e 95 (172)
T 3u50_C 85 TGTIPVMIFDQ 95 (172)
T ss_dssp TEEEEEEECHH
T ss_pred CCCEEEEEEhH
Confidence 33444555553
No 10
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=88.77 E-value=0.31 Score=32.01 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=22.5
Q ss_pred cccCCCCcCCceEEeceeCCccccCCceeEEE
Q psy15072 20 RRECTSEQCGAGVFMAAMSDRHYCGNKFSSLS 51 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA~H~DR~yCGKCg~T~~ 51 (97)
+-.||. ||....-..=..-|.|.+||+++.
T Consensus 27 ~y~Cp~--CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPN--CGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSS--SCCEEEEEEETTEEEETTTCCEEE
T ss_pred cCcCCC--CCCcceeccCCCeEECCCCCCEec
Confidence 456999 998555444467899999999864
No 11
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=86.91 E-value=0.22 Score=31.56 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=25.6
Q ss_pred cccCCCCcCCceEEeceeCCccccC-----CceeEEEee
Q psy15072 20 RRECTSEQCGAGVFMAAMSDRHYCG-----NKFSSLSVE 53 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA~H~DR~yCG-----KCg~T~~~~ 53 (97)
.+-||++.|+.++....-..+..|. +||+.+.+.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~ 63 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRE 63 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETT
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccc
Confidence 6789999999877654433456897 899887765
No 12
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=83.59 E-value=0.67 Score=31.13 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=22.5
Q ss_pred ccCCCCcCCceEEecee----CCccccCCceeEEEeec
Q psy15072 21 RECTSEQCGAGVFMAAM----SDRHYCGNKFSSLSVEL 54 (97)
Q Consensus 21 keCP~~eCGaGVFMA~H----~DR~yCGKCg~T~~~~~ 54 (97)
+-||. ||.-...-.- ..|+.|.+|+|.+..+.
T Consensus 5 ~FCp~--Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 5 QYCIE--CNNMLYPREDKVDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp CCCSS--SCCCCEECCCTTTCCCCEECSSSCCEECCSC
T ss_pred eeCcC--CCCEeeEcccCCCCeeEEECCCCCCeEEcCC
Confidence 57998 9985444332 23899999999876543
No 13
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=83.04 E-value=0.26 Score=33.02 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=14.7
Q ss_pred cccccccCCCCceEEEE
Q psy15072 56 SARSQVRFPPGANFLTF 72 (97)
Q Consensus 56 ~a~~q~~~p~~~~~l~~ 72 (97)
.+.+++++||.+|+|+|
T Consensus 50 ~I~~k~Gip~~qQrLif 66 (93)
T 3plu_A 50 VLSLQIGTQPNKIVLQK 66 (93)
T ss_dssp HHHHHHTCCGGGEEEEE
T ss_pred HHHHHhCCCHHHEEEEe
Confidence 55566999999999999
No 14
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=81.29 E-value=0.98 Score=33.86 Aligned_cols=35 Identities=11% Similarity=0.273 Sum_probs=27.7
Q ss_pred ecccCCCCcCCceEEeceeCCccccCCceeEEEeecc
Q psy15072 19 LRRECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELK 55 (97)
Q Consensus 19 lrkeCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~~~ 55 (97)
..+.||. ||.-..+....-|.+|..||...+.+..
T Consensus 106 ~~~fC~~--CG~~~~~~~~~~~~~C~~C~~~~yp~~~ 140 (269)
T 1vk6_A 106 SHKYCGY--CGHEMYPSKTEWAMLCSHCRERYYPQIA 140 (269)
T ss_dssp TTSBCTT--TCCBEEECSSSSCEEESSSSCEECCCCE
T ss_pred cCCcccc--CCCcCccCCCceeeeCCCCCCEecCCCC
Confidence 3578999 9998888776778899999987764433
No 15
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=80.52 E-value=0.43 Score=32.47 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=22.5
Q ss_pred ccCCCCcCCceEEec----eeCCccccCCceeEEEee
Q psy15072 21 RECTSEQCGAGVFMA----AMSDRHYCGNKFSSLSVE 53 (97)
Q Consensus 21 keCP~~eCGaGVFMA----~H~DR~yCGKCg~T~~~~ 53 (97)
+-||. ||.=...- .+..++.|.+|+|.+..+
T Consensus 5 ~FCp~--CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 5 RFCRD--CNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CBCSS--SCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred Ccccc--cCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 67998 99844333 334689999999988654
No 16
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=79.31 E-value=0.54 Score=32.97 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=20.7
Q ss_pred ccCCCCcCCceEEeceeCC------ccccCCceeEEEee
Q psy15072 21 RECTSEQCGAGVFMAAMSD------RHYCGNKFSSLSVE 53 (97)
Q Consensus 21 keCP~~eCGaGVFMA~H~D------R~yCGKCg~T~~~~ 53 (97)
+-||. ||. .|-.-.| ++.|.+|+|++..+
T Consensus 25 ~FCPe--CgN--mL~pked~~~~~l~~~CrtCgY~~~~~ 59 (133)
T 3qt1_I 25 RFCRD--CNN--MLYPREDKENNRLLFECRTCSYVEEAG 59 (133)
T ss_dssp CBCTT--TCC--BCBCCBCTTTCCBCCBCSSSCCBCCCS
T ss_pred eeCCC--CCC--EeeECccCCCceeEEECCCCCCcEEcC
Confidence 57997 997 4433333 79999999977543
No 17
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=78.48 E-value=0.77 Score=26.35 Aligned_cols=29 Identities=10% Similarity=0.312 Sum_probs=19.6
Q ss_pred ccCCCCcCCc-eEEeceeCCccccCCceeEEE
Q psy15072 21 RECTSEQCGA-GVFMAAMSDRHYCGNKFSSLS 51 (97)
Q Consensus 21 keCP~~eCGa-GVFMA~H~DR~yCGKCg~T~~ 51 (97)
..||. ||. -+..-.-.....|..||+.+.
T Consensus 6 ~~CP~--C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 6 KVCPA--CESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp CSCTT--TSCCCEEEETTTTEEEESSSCCBCC
T ss_pred EeCcC--CCCcceEEcCCCCeEECcccCCccc
Confidence 46998 987 333322235689999998763
No 18
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=77.26 E-value=0.33 Score=32.54 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=35.7
Q ss_pred cceEEEECCCCeEEEecccCCCCcCCceEEeceeCCccccCCceeEEEeecc--------cccccccCCCCceEEEEE
Q psy15072 4 EWQVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELK--------SARSQVRFPPGANFLTFV 73 (97)
Q Consensus 4 ~LkyYkVdenGKI~rlrkeCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~~~--------~a~~q~~~p~~~~~l~~~ 73 (97)
.|..|.|.++..|....+.+|. +--+|.- ..-|+- .++..+.. ...+..++||++|+|+|.
T Consensus 59 tL~~y~i~~~~~l~l~~~~~~~---~m~i~vk-----~~~g~~-~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 127 (159)
T 3rt3_B 59 PLASQGLGPGSTVLLVVDKSDE---PLSILVR-----NNKGRS-STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 127 (159)
T ss_dssp CGGGGTCCTTCEEEEEECCCCC---CEEEEEE-----CTTSCE-EEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CHHHcCCCCCCEEEEEccCCCC---cEEEEEE-----CCCCCE-EEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 4677888877777777776664 3333332 222443 23333222 223337999999999984
No 19
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=77.25 E-value=1 Score=28.83 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=20.3
Q ss_pred cccCCCCcCCceEEeceeCCccccCCcee
Q psy15072 20 RRECTSEQCGAGVFMAAMSDRHYCGNKFS 48 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA~H~DR~yCGKCg~ 48 (97)
.-.|.+ ||. -|.|.-..+|++|||
T Consensus 17 H~lCrR--CG~---~syH~qK~~Ca~CGy 40 (62)
T 3j21_e 17 HIRCRR--CGR---VSYNVKKGYCAACGF 40 (62)
T ss_dssp CCBCSS--SCS---BCEETTTTEETTTCT
T ss_pred eeeecc--cCc---chhccccccccccCC
Confidence 456999 997 367999999999998
No 20
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=76.39 E-value=1.3 Score=27.93 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=22.7
Q ss_pred cccCCCCcCCceEEeceeCCccccCCceeEEEee
Q psy15072 20 RRECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVE 53 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~ 53 (97)
.+-|| .|++++....-..+..|.+|++.+.++
T Consensus 25 ~~wCP--~C~~~~~~~~~~~~v~C~~C~~~FC~~ 56 (86)
T 2ct7_A 25 FLWCA--QCSFGFIYEREQLEATCPQCHQTFCVR 56 (86)
T ss_dssp EECCS--SSCCCEECCCSCSCEECTTTCCEECSS
T ss_pred EeECc--CCCchheecCCCCceEeCCCCCccccc
Confidence 45699 499977544333456899999888765
No 21
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=76.31 E-value=1.7 Score=29.52 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=21.8
Q ss_pred cccCCCCcCCceEEec----eeCCccccCCceeEEE
Q psy15072 20 RRECTSEQCGAGVFMA----AMSDRHYCGNKFSSLS 51 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA----~H~DR~yCGKCg~T~~ 51 (97)
.+.||+ ||.=.-+. ...+|.+|-.||...+
T Consensus 3 ~~~C~~--CG~~~~~~~~~G~~~~~~~~~~~~~~~~ 36 (189)
T 3cng_A 3 MKFCSQ--CGGEVILRIPEGDTLPRYICPKCHTIHY 36 (189)
T ss_dssp CCBCTT--TCCBCEEECCTTCSSCEEEETTTTEEEC
T ss_pred cccCch--hCCccccccccCCCCcceECCCCCCccC
Confidence 478999 99855432 3557899999996554
No 22
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=75.28 E-value=1.4 Score=27.86 Aligned_cols=24 Identities=17% Similarity=0.466 Sum_probs=19.7
Q ss_pred cccCCCCcCCceEEeceeCCccccCCcee
Q psy15072 20 RRECTSEQCGAGVFMAAMSDRHYCGNKFS 48 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA~H~DR~yCGKCg~ 48 (97)
+-.|.+ ||.- |.|.-..+|++|||
T Consensus 17 H~~CrR--CG~~---syH~qK~~Ca~CGy 40 (57)
T 1vq8_1 17 HTKCRR--CGEK---SYHTKKKVCSSCGF 40 (57)
T ss_dssp EEECTT--TCSE---EEETTTTEETTTCT
T ss_pred cccccc--cCCh---hhhccccccccccC
Confidence 345888 9974 57888999999998
No 23
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=74.68 E-value=0.68 Score=31.03 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=24.0
Q ss_pred cccccccCCCCceEEEEEe-c-----------ceeeeeeeeeEEEecc
Q psy15072 56 SARSQVRFPPGANFLTFVL-G-----------TASFLVSYPVLLFDSD 91 (97)
Q Consensus 56 ~a~~q~~~p~~~~~l~~~~-~-----------~~~~~~~~~~~~~~~~ 91 (97)
...+|.++||.+|+|+|.- + ...--.+-|+.||+.+
T Consensus 42 ~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~~ 89 (94)
T 4efo_A 42 LVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSLE 89 (94)
T ss_dssp HHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEECC
T ss_pred HHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEecC
Confidence 4556799999999999965 2 2222334577777653
No 24
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=74.49 E-value=2.2 Score=29.97 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=20.8
Q ss_pred cccCCCCcCCceEEeceeCCccccCCceeEEE
Q psy15072 20 RRECTSEQCGAGVFMAAMSDRHYCGNKFSSLS 51 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA~H~DR~yCGKCg~T~~ 51 (97)
+-.||. ||.--+=-.-..-|.|.+|++++.
T Consensus 60 kytCPf--CGk~~vKR~avGIW~C~~Cgk~fA 89 (116)
T 3cc2_Z 60 DHACPN--CGEDRVDRQGTGIWQCSYCDYKFT 89 (116)
T ss_dssp CEECSS--SCCEEEEEEETTEEEETTTCCEEE
T ss_pred CCcCCC--CCCceeEecCceeEECCCCCCEEE
Confidence 446998 997433233345699999999864
No 25
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=74.27 E-value=1 Score=29.36 Aligned_cols=15 Identities=7% Similarity=-0.115 Sum_probs=13.2
Q ss_pred cccCCCCceEEEEEe
Q psy15072 60 QVRFPPGANFLTFVL 74 (97)
Q Consensus 60 q~~~p~~~~~l~~~~ 74 (97)
.+++||.+|+|+|.-
T Consensus 49 ~~Gip~~~QrLi~~g 63 (97)
T 2kj6_A 49 KCGTSVNSMALELYD 63 (97)
T ss_dssp HHCCCTTSEEEEEEC
T ss_pred HHCcCHHHeEEEEec
Confidence 389999999999964
No 26
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=73.97 E-value=0.9 Score=28.84 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.3
Q ss_pred cccccCCCCceEEEEE
Q psy15072 58 RSQVRFPPGANFLTFV 73 (97)
Q Consensus 58 ~~q~~~p~~~~~l~~~ 73 (97)
...+++||++|+|+|.
T Consensus 35 ~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 35 FTHFATPPEYMQLQLI 50 (86)
T ss_dssp HTTSCCCGGGEEEEEE
T ss_pred HHHHCCCHHHEEEEEe
Confidence 3349999999999985
No 27
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=73.24 E-value=1.1 Score=28.90 Aligned_cols=15 Identities=7% Similarity=-0.197 Sum_probs=13.2
Q ss_pred cccCCCCceEEEEEe
Q psy15072 60 QVRFPPGANFLTFVL 74 (97)
Q Consensus 60 q~~~p~~~~~l~~~~ 74 (97)
.+++||.+|+|+|.-
T Consensus 50 ~~GiP~~~QrL~~~~ 64 (95)
T 2kjr_A 50 LTGGCAGTMKVQVFK 64 (95)
T ss_dssp HHCSCTTTEEEEEEE
T ss_pred HHCcCHHHeEEEEec
Confidence 389999999999973
No 28
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=70.68 E-value=1.5 Score=27.99 Aligned_cols=16 Identities=6% Similarity=-0.201 Sum_probs=13.3
Q ss_pred cccccCCCCceEEEEE
Q psy15072 58 RSQVRFPPGANFLTFV 73 (97)
Q Consensus 58 ~~q~~~p~~~~~l~~~ 73 (97)
.+..++|+++|+|+|.
T Consensus 35 ~~~~gip~~~QrLi~~ 50 (87)
T 2lxa_A 35 SEEKASHISEIKLLLK 50 (87)
T ss_dssp HTTSCSSSTTEEEEET
T ss_pred HHhcCCChHHEEEEEC
Confidence 4446999999999995
No 29
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=69.73 E-value=2.4 Score=27.45 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEecccCCCCcCCceEEeceeCCccccCCceeEE
Q psy15072 17 HRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSL 50 (97)
Q Consensus 17 ~rlrkeCP~~eCGaGVFMA~H~DR~yCGKCg~T~ 50 (97)
.+.+..||. ||..-.--.-..-|.|.+|+++.
T Consensus 24 q~~ky~C~f--Cgk~~vkR~a~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 24 HKKKYKCPV--CGFPKLKRASTSIWVCGHCGYKI 55 (73)
T ss_pred cccCccCCC--CCCceeEEEEeEEEECCCCCcEE
Confidence 344567998 98633222223458999999985
No 30
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=69.25 E-value=2.5 Score=26.14 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=16.7
Q ss_pred cccCCCCcCCceEEeceeCCccccCCcee
Q psy15072 20 RRECTSEQCGAGVFMAAMSDRHYCGNKFS 48 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA~H~DR~yCGKCg~ 48 (97)
.-+||. ||. .|...+.|..||+
T Consensus 30 l~~c~~--cG~-----~~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 30 LTECPQ--CHG-----KKLSHHICPNCGY 51 (60)
T ss_dssp CEECTT--TCC-----EECTTBCCTTTCB
T ss_pred ceECCC--CCC-----EeCCceEcCCCCc
Confidence 346988 997 4666778999984
No 31
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=69.12 E-value=3.8 Score=25.89 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=24.4
Q ss_pred cCCCCcCCceEEeceeCCccccCCceeEEEeecc
Q psy15072 22 ECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELK 55 (97)
Q Consensus 22 eCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~~~ 55 (97)
.||. |+...-...-.....|..||..|-....
T Consensus 10 ~CP~--ck~~L~~~~~~~~LiC~~cg~~YPI~dG 41 (70)
T 2js4_A 10 VCPV--CKGRLEFQRAQAELVCNADRLAFPVRDG 41 (70)
T ss_dssp BCTT--TCCBEEEETTTTEEEETTTTEEEEEETT
T ss_pred ECCC--CCCcCEEeCCCCEEEcCCCCceecCCCC
Confidence 5998 9876655544567899999999977655
No 32
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=68.69 E-value=2.9 Score=25.27 Aligned_cols=29 Identities=7% Similarity=0.146 Sum_probs=19.6
Q ss_pred cCCCCcCCceEEeceeC-CccccCCceeEEEe
Q psy15072 22 ECTSEQCGAGVFMAAMS-DRHYCGNKFSSLSV 52 (97)
Q Consensus 22 eCP~~eCGaGVFMA~H~-DR~yCGKCg~T~~~ 52 (97)
.||. ||..-+.-.|. .-..|..||+.+..
T Consensus 13 ~Cp~--C~~~~lv~D~~~ge~vC~~CGlVl~e 42 (58)
T 1dl6_A 13 TCPN--HPDAILVEDYRAGDMICPECGLVVGD 42 (58)
T ss_dssp SBTT--BSSSCCEECSSSCCEECTTTCCEECC
T ss_pred cCcC--CCCCceeEeCCCCeEEeCCCCCEEec
Confidence 6998 98633333443 45789999998743
No 33
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=68.43 E-value=3.8 Score=28.32 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=19.5
Q ss_pred ecccCCCCcCCceEEece-eCCccccCCceeEEE
Q psy15072 19 LRRECTSEQCGAGVFMAA-MSDRHYCGNKFSSLS 51 (97)
Q Consensus 19 lrkeCP~~eCGaGVFMA~-H~DR~yCGKCg~T~~ 51 (97)
.+-.||. ||.-- |-. -..-|+|++|++++.
T Consensus 35 aky~Cpf--Cgk~~-vKR~a~GIW~C~kCg~~~A 65 (103)
T 4a17_Y 35 AKYGCPF--CGKVA-VKRAAVGIWKCKPCKKIIA 65 (103)
T ss_dssp SCEECTT--TCCEE-EEEEETTEEEETTTTEEEE
T ss_pred cCCCCCC--CCCce-eeecCcceEEcCCCCCEEe
Confidence 3456998 98632 221 124589999999864
No 34
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=68.27 E-value=3.2 Score=29.96 Aligned_cols=32 Identities=13% Similarity=0.345 Sum_probs=20.0
Q ss_pred CCeEEEecccCCCCcCCce---EEeceeCCccccCCceeE
Q psy15072 13 NGKIHRLRRECTSEQCGAG---VFMAAMSDRHYCGNKFSS 49 (97)
Q Consensus 13 nGKI~rlrkeCP~~eCGaG---VFMA~H~DR~yCGKCg~T 49 (97)
+|...+ +-.||. ||.+ .|.. ..-++|.+||..
T Consensus 8 ~~~~~~-~~~CP~--Cg~~d~~~~~~--dg~~~C~~Cg~~ 42 (255)
T 1nui_A 8 DSVFLY-HIPCDN--CGSSDGNSLFS--DGHTFCYVCEKW 42 (255)
T ss_dssp --CEEE-EECCSS--SCCSSCEEEET--TSCEEETTTCCE
T ss_pred ccceec-CCcCCC--CCCCCCceEeC--CCCeecccCCCc
Confidence 354444 678998 9872 2222 224899999975
No 35
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.34 E-value=3.8 Score=27.20 Aligned_cols=30 Identities=13% Similarity=0.356 Sum_probs=19.0
Q ss_pred cccCCCCcCCceEEeceeCCccccCCceeEEE
Q psy15072 20 RRECTSEQCGAGVFMAAMSDRHYCGNKFSSLS 51 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA~H~DR~yCGKCg~T~~ 51 (97)
+-.||. ||.--.=-.-..=|.|.+|++++.
T Consensus 35 ky~Cpf--CGk~~vkR~a~GIW~C~kCg~~~A 64 (83)
T 3j21_i 35 KHTCPV--CGRKAVKRISTGIWQCQKCGATFA 64 (83)
T ss_dssp CBCCSS--SCSSCEEEEETTEEEETTTCCEEE
T ss_pred ccCCCC--CCCceeEecCcCeEEcCCCCCEEe
Confidence 456998 986321111124589999999863
No 36
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=66.23 E-value=3.9 Score=25.79 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=23.7
Q ss_pred cCCCCcCCceEEeceeCCccccCCceeEEEeecc
Q psy15072 22 ECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELK 55 (97)
Q Consensus 22 eCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~~~ 55 (97)
.||. |+...-...-.+...|..||..|-....
T Consensus 10 ~CP~--ck~~L~~~~~~~~LiC~~cg~~YPI~dG 41 (69)
T 2pk7_A 10 ACPI--CKGPLKLSADKTELISKGAGLAYPIRDG 41 (69)
T ss_dssp CCTT--TCCCCEECTTSSEEEETTTTEEEEEETT
T ss_pred eCCC--CCCcCeEeCCCCEEEcCCCCcEecCcCC
Confidence 5998 9876555444567899999999877654
No 37
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=65.99 E-value=2.9 Score=28.66 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=20.1
Q ss_pred cccCCCCcCCceEEeceeCCccccCCceeE
Q psy15072 20 RRECTSEQCGAGVFMAAMSDRHYCGNKFSS 49 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA~H~DR~yCGKCg~T 49 (97)
+-.|.+ ||.- |.|.-..+|++|||.
T Consensus 16 HtlCrR--CG~~---syH~qK~~Ca~CGyp 40 (94)
T 4a18_A 16 HTLCRR--CGKA---TYHKQKLRCAACGYP 40 (94)
T ss_dssp EEECTT--TCSE---EEETTTTEESSSCGG
T ss_pred cceecC--cCch---hhhhccccccccCCc
Confidence 456888 9974 568889999999983
No 38
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=65.93 E-value=4.1 Score=25.65 Aligned_cols=32 Identities=3% Similarity=-0.101 Sum_probs=23.9
Q ss_pred cCCCCcCCceEEeceeCCccccCCceeEEEeecc
Q psy15072 22 ECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELK 55 (97)
Q Consensus 22 eCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~~~ 55 (97)
.||. |....-...-.....|..|+..|-....
T Consensus 12 ~CP~--ck~~L~~~~~~g~LvC~~c~~~YPI~dG 43 (67)
T 2jny_A 12 ACPK--DKGPLRYLESEQLLVNERLNLAYRIDDG 43 (67)
T ss_dssp BCTT--TCCBCEEETTTTEEEETTTTEEEEEETT
T ss_pred CCCC--CCCcCeEeCCCCEEEcCCCCccccCCCC
Confidence 5998 9876655544567899999999876644
No 39
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=65.26 E-value=1.8 Score=28.90 Aligned_cols=14 Identities=0% Similarity=-0.138 Sum_probs=12.5
Q ss_pred cccCCCCceEEEEE
Q psy15072 60 QVRFPPGANFLTFV 73 (97)
Q Consensus 60 q~~~p~~~~~l~~~ 73 (97)
..++||++|+|||.
T Consensus 52 k~gip~~qQrLI~~ 65 (100)
T 1wju_A 52 TFGLQENYIKIVIN 65 (100)
T ss_dssp HTTCCSTTCEEEET
T ss_pred HHCcCHHHeEEEeC
Confidence 38899999999986
No 40
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=64.65 E-value=3.6 Score=25.47 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=15.4
Q ss_pred cccCCCCcCCceEEeceeCCccccCCcee
Q psy15072 20 RRECTSEQCGAGVFMAAMSDRHYCGNKFS 48 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA~H~DR~yCGKCg~ 48 (97)
--+||. ||. .|..-+.|..||+
T Consensus 30 l~~c~~--cGe-----~~~~H~vc~~CG~ 51 (60)
T 3v2d_5 30 LVPCPE--CKA-----MKPPHTVCPECGY 51 (60)
T ss_dssp CEECTT--TCC-----EECTTSCCTTTCE
T ss_pred eeECCC--CCC-----eecceEEcCCCCc
Confidence 457998 997 3444456999993
No 41
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=63.92 E-value=4.9 Score=25.26 Aligned_cols=32 Identities=3% Similarity=-0.012 Sum_probs=23.2
Q ss_pred cCCCCcCCceEEeceeCCccccCCceeEEEeecc
Q psy15072 22 ECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELK 55 (97)
Q Consensus 22 eCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~~~ 55 (97)
.||. |+...-...-.+...|..||..|-....
T Consensus 10 ~CP~--ck~~L~~~~~~~~LiC~~cg~~YPI~dG 41 (68)
T 2jr6_A 10 VCPV--TKGRLEYHQDKQELWSRQAKLAYPIKDG 41 (68)
T ss_dssp BCSS--SCCBCEEETTTTEEEETTTTEEEEEETT
T ss_pred ECCC--CCCcCeEeCCCCEEEcCCCCcEecCCCC
Confidence 5998 9876554433467899999999876644
No 42
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.68 E-value=1.5 Score=29.25 Aligned_cols=17 Identities=12% Similarity=-0.216 Sum_probs=14.0
Q ss_pred ccccccCCCCceEEEEE
Q psy15072 57 ARSQVRFPPGANFLTFV 73 (97)
Q Consensus 57 a~~q~~~p~~~~~l~~~ 73 (97)
..+++++|+.+|+|+|+
T Consensus 58 Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 58 IAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp HHHHHCCCGGGCEEEET
T ss_pred HHHHhCCCHHHEEEEEC
Confidence 33448999999999987
No 43
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=63.37 E-value=4.9 Score=25.24 Aligned_cols=32 Identities=13% Similarity=0.310 Sum_probs=23.4
Q ss_pred cCCCCcCCceEEeceeCCccccCCceeEEEeecc
Q psy15072 22 ECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELK 55 (97)
Q Consensus 22 eCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~~~ 55 (97)
.||. |+...-...-.+...|..||..|-....
T Consensus 10 ~CP~--ck~~L~~~~~~~~LiC~~cg~~YPI~dG 41 (68)
T 2hf1_A 10 VCPL--CKGPLVFDKSKDELICKGDRLAFPIKDG 41 (68)
T ss_dssp BCTT--TCCBCEEETTTTEEEETTTTEEEEEETT
T ss_pred ECCC--CCCcCeEeCCCCEEEcCCCCcEecCCCC
Confidence 5998 9876554433467899999999876644
No 44
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=62.65 E-value=2.9 Score=28.67 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=19.8
Q ss_pred cccCCCCcCCceEEeceeCCccccCCceeE
Q psy15072 20 RRECTSEQCGAGVFMAAMSDRHYCGNKFSS 49 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA~H~DR~yCGKCg~T 49 (97)
+-.|.+ ||.- |.|.-..+|++|||.
T Consensus 16 HtlCrR--CG~~---syH~qK~~Ca~CGyp 40 (94)
T 3iz5_l 16 HTLCVR--CGRR---SFHLQKSTCSSCGYP 40 (94)
T ss_dssp EEECTT--TCSE---EEEGGGTEETTTCSS
T ss_pred cceecC--cCch---hhhcccccccccCCc
Confidence 446888 9974 468888999999983
No 45
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=61.46 E-value=2.9 Score=27.14 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=18.1
Q ss_pred ecccCCCCcCCceEEecee-CCccccCCceeEE
Q psy15072 19 LRRECTSEQCGAGVFMAAM-SDRHYCGNKFSSL 50 (97)
Q Consensus 19 lrkeCP~~eCGaGVFMA~H-~DR~yCGKCg~T~ 50 (97)
.+-.||. ||.- =|-.. ..-|.|++|+++.
T Consensus 25 ~ky~C~f--Cgk~-~vkR~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 25 ARYDCSF--CGKK-TVKRGAAGIWTCSCCKKTV 54 (72)
T ss_dssp SCBCCSS--CCSS-CBSBCSSSCBCCSSSCCCC
T ss_pred cCccCCC--CCCc-eeEecCCCeEECCCCCCEE
Confidence 3456998 9852 12211 1348999999875
No 46
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=61.31 E-value=4 Score=27.56 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=18.7
Q ss_pred cccCCCCcCCceEEece-eCCccccCCceeEEE
Q psy15072 20 RRECTSEQCGAGVFMAA-MSDRHYCGNKFSSLS 51 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA~-H~DR~yCGKCg~T~~ 51 (97)
+-.||. ||.-- |-. -..=|.|++|++++.
T Consensus 36 ky~Cpf--Cgk~~-vkR~a~GIW~C~~Cg~~~A 65 (92)
T 3iz5_m 36 KYFCEF--CGKFA-VKRKAVGIWGCKDCGKVKA 65 (92)
T ss_dssp CBCCTT--TCSSC-BEEEETTEEECSSSCCEEE
T ss_pred cccCcc--cCCCe-eEecCcceEEcCCCCCEEe
Confidence 456998 98621 111 123489999999864
No 47
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=60.82 E-value=2 Score=29.82 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=12.1
Q ss_pred ccCCCCceEEEEE
Q psy15072 61 VRFPPGANFLTFV 73 (97)
Q Consensus 61 ~~~p~~~~~l~~~ 73 (97)
+++||++|+|||.
T Consensus 35 ~giPp~qQrLI~~ 47 (118)
T 4ajy_B 35 LKRPPDEQRLYKD 47 (118)
T ss_dssp HCCCGGGEEEEET
T ss_pred HCCCHHHeEEEeC
Confidence 8999999999985
No 48
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=60.17 E-value=2.1 Score=26.56 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=13.2
Q ss_pred cccccCCCCceEEEEE
Q psy15072 58 RSQVRFPPGANFLTFV 73 (97)
Q Consensus 58 ~~q~~~p~~~~~l~~~ 73 (97)
.++.++||.+|+|+|.
T Consensus 41 ~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 41 ERSQHIPVSKQTLIVD 56 (84)
T ss_dssp HHHHTCCGGGEEEEET
T ss_pred HHHHCcChHHEEEEEC
Confidence 3348899999999985
No 49
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=59.97 E-value=4.6 Score=29.01 Aligned_cols=26 Identities=19% Similarity=0.566 Sum_probs=19.2
Q ss_pred eEEEecccCCCCcCCceEEeceeCCccccCCcee
Q psy15072 15 KIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFS 48 (97)
Q Consensus 15 KI~rlrkeCP~~eCGaGVFMA~H~DR~yCGKCg~ 48 (97)
+.......||+ ||+ .++++||.+|.+
T Consensus 66 ~~q~~~~~C~~--Cg~------~f~~Y~C~~C~l 91 (143)
T 2dkt_A 66 KLQHAQQTCED--CST------LFGEYYCSICHL 91 (143)
T ss_dssp CEECSCSBCSS--SCC------BSCSEECSSSCC
T ss_pred ccccccCcCCC--CCc------cceeeEeceeec
Confidence 44445568998 985 456999999975
No 50
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=59.96 E-value=4.2 Score=27.49 Aligned_cols=30 Identities=17% Similarity=0.398 Sum_probs=18.9
Q ss_pred ecccCCCCcCCceEEece-eCCccccCCceeEEE
Q psy15072 19 LRRECTSEQCGAGVFMAA-MSDRHYCGNKFSSLS 51 (97)
Q Consensus 19 lrkeCP~~eCGaGVFMA~-H~DR~yCGKCg~T~~ 51 (97)
.+-.||. ||.-- |-. -..=|+|++|+.++.
T Consensus 35 ~ky~Cpf--Cgk~~-vkR~a~GIW~C~~C~~~~A 65 (92)
T 3izc_m 35 ARYDCSF--CGKKT-VKRGAAGIWTCSCCKKTVA 65 (92)
T ss_dssp SCCCCSS--SCSSC-CEEEETTEEECTTTCCEEE
T ss_pred cCCcCCC--CCCce-eeecccceEEcCCCCCEEe
Confidence 3456998 98521 111 123489999999863
No 51
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=58.71 E-value=2.3 Score=25.11 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=13.9
Q ss_pred cccccccCCCCceEEEEE
Q psy15072 56 SARSQVRFPPGANFLTFV 73 (97)
Q Consensus 56 ~a~~q~~~p~~~~~l~~~ 73 (97)
...+..++||.+|+|+|.
T Consensus 33 ~i~~~~gip~~~qrL~~~ 50 (79)
T 3phx_B 33 QVSGLEGVQDDLFWLTFE 50 (79)
T ss_dssp HHHHHHTCCGGGEEEEET
T ss_pred HHHhhcCCCHHHEEEEEC
Confidence 333448999999999984
No 52
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=58.56 E-value=1.7 Score=26.66 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=16.5
Q ss_pred ccccCCceeEEEeecccccccccCCCCceE
Q psy15072 40 RHYCGNKFSSLSVELKSARSQVRFPPGANF 69 (97)
Q Consensus 40 R~yCGKCg~T~~~~~~~a~~q~~~p~~~~~ 69 (97)
.+.|+|||.+...++.+.-..++-|-|.-+
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCS
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcE
Confidence 567888887765555544444555554433
No 53
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=58.42 E-value=5.2 Score=27.00 Aligned_cols=41 Identities=29% Similarity=0.501 Sum_probs=25.6
Q ss_pred EecccCCCCcCCce--EEeceeC---C-----ccccCCceeEEEeeccccccc
Q psy15072 18 RLRRECTSEQCGAG--VFMAAMS---D-----RHYCGNKFSSLSVELKSARSQ 60 (97)
Q Consensus 18 rlrkeCP~~eCGaG--VFMA~H~---D-----R~yCGKCg~T~~~~~~~a~~q 60 (97)
+....||+ ||.. +|+-... | -+.|-+||+.+..+...-+.|
T Consensus 70 ~t~~~Cp~--C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn~~~~~~ 120 (122)
T 1twf_I 70 RSDRECPK--CHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKNKRTQ 120 (122)
T ss_dssp CCCCCCTT--TCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTTCCCSS
T ss_pred ccCCCCCC--CCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCChhheee
Confidence 34678998 9875 5553321 1 268999999876655444433
No 54
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=57.37 E-value=6.7 Score=22.78 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=19.4
Q ss_pred cccCCCCcCCceEEeceeCCccccCCceeE
Q psy15072 20 RRECTSEQCGAGVFMAAMSDRHYCGNKFSS 49 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA~H~DR~yCGKCg~T 49 (97)
-..||++.||.= +-.-|..|-||+..
T Consensus 14 DW~C~~~~C~~~----Nfa~R~~C~~C~~p 39 (45)
T 1n0z_A 14 DWICPDKKCGNV----NFARRTSCDRCGRE 39 (45)
T ss_dssp SCBCSSTTTCCB----CCSSCSBCSSSCCB
T ss_pred CcCCCCCCCCCE----EccccccccccCCc
Confidence 478997779861 33569999999853
No 55
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=56.59 E-value=5.5 Score=25.18 Aligned_cols=21 Identities=14% Similarity=-0.042 Sum_probs=14.1
Q ss_pred eceeCCccccCCceeEEEeec
Q psy15072 34 MAAMSDRHYCGNKFSSLSVEL 54 (97)
Q Consensus 34 MA~H~DR~yCGKCg~T~~~~~ 54 (97)
|+.-..+|.|--|||+|.-.+
T Consensus 1 m~~~m~~y~C~vCGyiYd~~~ 21 (70)
T 1dx8_A 1 MEIDEGKYECEACGYIYEPEK 21 (70)
T ss_dssp CBCCSSCEEETTTCCEECTTT
T ss_pred CCCCCceEEeCCCCEEEcCCC
Confidence 344456888999998875443
No 56
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=56.26 E-value=2.6 Score=26.46 Aligned_cols=15 Identities=20% Similarity=0.080 Sum_probs=13.2
Q ss_pred ccccCCCCceEEEEE
Q psy15072 59 SQVRFPPGANFLTFV 73 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~ 73 (97)
...++||.+|+|+|.
T Consensus 40 ~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 40 LVVGSPASCMELELY 54 (95)
T ss_dssp HHTCSCTTTCBCEEE
T ss_pred HHHCCCHHHeEEEEe
Confidence 338999999999997
No 57
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=54.08 E-value=4.3 Score=26.82 Aligned_cols=16 Identities=6% Similarity=-0.172 Sum_probs=13.5
Q ss_pred ccccCCCCceEEEEEe
Q psy15072 59 SQVRFPPGANFLTFVL 74 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~~ 74 (97)
...++||.+|+|+|.-
T Consensus 39 ~~~Gip~~~qrL~~~g 54 (122)
T 1t0y_A 39 LVVGTTVDSMRIQLFD 54 (122)
T ss_dssp HHHCCCTTTEEEEEEC
T ss_pred HHhCCCHHHeEEEEec
Confidence 3389999999999963
No 58
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=53.01 E-value=3.2 Score=25.01 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.0
Q ss_pred cccccCCCCceEEEEE
Q psy15072 58 RSQVRFPPGANFLTFV 73 (97)
Q Consensus 58 ~~q~~~p~~~~~l~~~ 73 (97)
.++.++||.+|+|+|.
T Consensus 48 ~~~~gip~~~qrLi~~ 63 (88)
T 4eew_A 48 AASVSIPSEKQRLIYQ 63 (88)
T ss_dssp HHHHTCCGGGEEEEET
T ss_pred HHHhCCCHHHEEEEEC
Confidence 3347999999999983
No 59
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=51.98 E-value=3.4 Score=28.41 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=12.4
Q ss_pred cccCCCCceEEEEE
Q psy15072 60 QVRFPPGANFLTFV 73 (97)
Q Consensus 60 q~~~p~~~~~l~~~ 73 (97)
.+++||++|+|+|.
T Consensus 34 ~egIP~~qQrLi~~ 47 (118)
T 2fnj_B 34 ILKRPPEEQRLYKD 47 (118)
T ss_dssp HHCCCGGGEEEEET
T ss_pred HhCCCHHHeEEEEC
Confidence 38999999999985
No 60
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=51.75 E-value=3.5 Score=24.28 Aligned_cols=15 Identities=13% Similarity=0.126 Sum_probs=12.7
Q ss_pred ccccCCCCceEEEEE
Q psy15072 59 SQVRFPPGANFLTFV 73 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~ 73 (97)
++.++|+.+++|+|.
T Consensus 35 ~~~gi~~~~qrL~~~ 49 (79)
T 2uyz_B 35 QRQGVPMNSLRFLFE 49 (79)
T ss_dssp HHHTCCGGGEEEEET
T ss_pred HHHCCCcccEEEEEC
Confidence 348899999999984
No 61
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=51.62 E-value=4.7 Score=25.38 Aligned_cols=15 Identities=13% Similarity=-0.051 Sum_probs=12.6
Q ss_pred ccccCCCCceEEEEE
Q psy15072 59 SQVRFPPGANFLTFV 73 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~ 73 (97)
++.++||.+|+|+|.
T Consensus 46 ~~~gip~~~QrLi~~ 60 (94)
T 2kan_A 46 IVENTPIKRMQLYYS 60 (94)
T ss_dssp HHSSSCTTTEEEEET
T ss_pred HHHCcCHHHEEEEEC
Confidence 347899999999985
No 62
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=50.12 E-value=10 Score=23.54 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.3
Q ss_pred eEEEECCCCeEEEecccC
Q psy15072 6 QVCNVDENGKIHRLRREC 23 (97)
Q Consensus 6 kyYkVdenGKI~rlrkeC 23 (97)
..|++++||||.+.+-.-
T Consensus 111 ~~~~~~~dGkI~~~~~y~ 128 (139)
T 2a15_A 111 FTYRVNKAGLITNMRGYW 128 (139)
T ss_dssp EEEEECTTSCEEEEEEEC
T ss_pred EEEEECCCCeEEEeehhc
Confidence 578998789999987643
No 63
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=49.65 E-value=3.9 Score=24.72 Aligned_cols=17 Identities=18% Similarity=0.303 Sum_probs=13.5
Q ss_pred ccccccCCCCceEEEEE
Q psy15072 57 ARSQVRFPPGANFLTFV 73 (97)
Q Consensus 57 a~~q~~~p~~~~~l~~~ 73 (97)
..+..++|+.+|+|+|.
T Consensus 35 i~~~~gip~~~qrLi~~ 51 (90)
T 4dwf_A 35 IAASVSIPSEKQRLIYQ 51 (90)
T ss_dssp HHHHHTCCGGGEEEEET
T ss_pred HHHHhCCCHHHEEEEEC
Confidence 33448899999999984
No 64
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=48.82 E-value=2.9 Score=26.37 Aligned_cols=10 Identities=10% Similarity=0.029 Sum_probs=4.4
Q ss_pred cccCCceeEE
Q psy15072 41 HYCGNKFSSL 50 (97)
Q Consensus 41 ~yCGKCg~T~ 50 (97)
..|-.||+-+
T Consensus 39 iRC~~CG~RI 48 (63)
T 3h0g_L 39 IRCRECGHRV 48 (63)
T ss_dssp CCCSSSCCCC
T ss_pred eECCCCCcEE
Confidence 3444444433
No 65
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=48.41 E-value=11 Score=22.70 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=14.9
Q ss_pred ceEEEECCCCeEEEecccC
Q psy15072 5 WQVCNVDENGKIHRLRREC 23 (97)
Q Consensus 5 LkyYkVdenGKI~rlrkeC 23 (97)
...|++++||||.+.+-.-
T Consensus 102 ~~~~~~~~dGkI~~~~~~~ 120 (131)
T 1oh0_A 102 IDVMRFDEHGRIQTMQAYW 120 (131)
T ss_dssp EEEEEECTTSCEEEEEEEC
T ss_pred EEEEEECCCCcEEhHHhhc
Confidence 3468997789999987754
No 66
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=47.67 E-value=5.4 Score=25.92 Aligned_cols=15 Identities=7% Similarity=-0.210 Sum_probs=12.6
Q ss_pred ccccCCCCceEEEEE
Q psy15072 59 SQVRFPPGANFLTFV 73 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~ 73 (97)
+..++|+.+|+|+|.
T Consensus 54 ~~~gip~~~QrLi~~ 68 (98)
T 4a20_A 54 EEKASHISEIKLLLK 68 (98)
T ss_dssp TTSCSCGGGEEEEET
T ss_pred HhcCCChhhEEEEEC
Confidence 335899999999995
No 67
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=47.42 E-value=9 Score=23.09 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=16.0
Q ss_pred ccccCCceeEEEeecccccccccCCCC
Q psy15072 40 RHYCGNKFSSLSVELKSARSQVRFPPG 66 (97)
Q Consensus 40 R~yCGKCg~T~~~~~~~a~~q~~~p~~ 66 (97)
++.|.-|||+|.-.+... ..+||||
T Consensus 3 ~y~C~~CGyvYd~~~Gdp--~~gi~pG 27 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLP--EEGIPAG 27 (55)
T ss_dssp EEEETTTCCEEETTTCBT--TTTBCTT
T ss_pred cEEeCCCCeEECCCcCCc--ccCcCCC
Confidence 788999999876544333 3344444
No 68
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.33 E-value=5.6 Score=24.45 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=11.1
Q ss_pred cCCCCceEEEEE
Q psy15072 62 RFPPGANFLTFV 73 (97)
Q Consensus 62 ~~p~~~~~l~~~ 73 (97)
++|+.+|+|+|.
T Consensus 46 ~i~~~~QrLi~~ 57 (93)
T 1wgd_A 46 RPRPEDQRLIYS 57 (93)
T ss_dssp CCCTTTCEEEET
T ss_pred CCChHHeEEEEC
Confidence 899999999985
No 69
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=47.29 E-value=4.5 Score=23.63 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=13.0
Q ss_pred cccccCCCCceEEEEE
Q psy15072 58 RSQVRFPPGANFLTFV 73 (97)
Q Consensus 58 ~~q~~~p~~~~~l~~~ 73 (97)
.++.++|+.+|+|+|.
T Consensus 35 ~~~~gip~~~qrL~~~ 50 (78)
T 2faz_A 35 QELFHVEPGLQRLFYR 50 (78)
T ss_dssp HHHHCCCGGGEEEEET
T ss_pred HHHHCcChhhEEEEEC
Confidence 3447999999999984
No 70
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.10 E-value=5.8 Score=24.27 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=13.0
Q ss_pred cccccCCCCceEEEEE
Q psy15072 58 RSQVRFPPGANFLTFV 73 (97)
Q Consensus 58 ~~q~~~p~~~~~l~~~ 73 (97)
.++.++|+.+|+|+|.
T Consensus 42 ~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 42 EEVIGVPQSFQKLIFK 57 (92)
T ss_dssp HHHTCCCTTTCEEEET
T ss_pred HHHHCcCHHHEEEEEC
Confidence 3347899999999984
No 71
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=47.08 E-value=8.6 Score=33.64 Aligned_cols=30 Identities=40% Similarity=0.804 Sum_probs=22.7
Q ss_pred CCCeEEEecccCCCCcCCceEEeceeCCccccC--Cce
Q psy15072 12 ENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCG--NKF 47 (97)
Q Consensus 12 enGKI~rlrkeCP~~eCGaGVFMA~H~DR~yCG--KCg 47 (97)
++| -.|+.||. ||.. |-+.-.+|-+|| -|+
T Consensus 15 ~~g---~~r~~c~~--cg~~-fwt~~~~r~~cgd~~c~ 46 (739)
T 2ztg_A 15 ENG---FVRKRCPK--CGKH-FWTADPEREICGDPPCE 46 (739)
T ss_dssp TTT---CEEECCCS--SSSC-EEECCSSCCCCCSSSSC
T ss_pred HCC---cEEeECCC--CCCc-eecCCCCcCCCCCCCCC
Confidence 466 35699999 9985 666667999999 464
No 72
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=46.92 E-value=2.9 Score=28.45 Aligned_cols=60 Identities=22% Similarity=0.432 Sum_probs=32.3
Q ss_pred cceEEEECCCCeEEEecccCCCCcCCceEEeceeCCccccCCceeEEEeecc--------cccccccCCCCceEEEEE
Q psy15072 4 EWQVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELK--------SARSQVRFPPGANFLTFV 73 (97)
Q Consensus 4 ~LkyYkVdenGKI~rlrkeCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~~~--------~a~~q~~~p~~~~~l~~~ 73 (97)
.|..|.+.++.+|....+ .+. |..+|. |...|+-. ++..+.. +..++.++||.+|+|+|.
T Consensus 75 tL~~~~i~~~~~l~l~~~-~~g---g~~i~V-----k~~~g~~~-~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 142 (172)
T 3u30_A 75 TLSDYNIQKESTLHLVLR-LRG---GMQIFV-----KTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 142 (172)
T ss_dssp BTGGGTCCTTCEEEEEEC-CCC---CEEEEE-----EESSCCEE-EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred CHhHcCCcccceeeeeec-ccc---ccccee-----ecccCcce-eEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC
Confidence 466677776555555443 332 334443 22334442 3323222 233337999999999984
No 73
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=46.88 E-value=4.6 Score=25.37 Aligned_cols=15 Identities=13% Similarity=0.126 Sum_probs=12.8
Q ss_pred ccccCCCCceEEEEE
Q psy15072 59 SQVRFPPGANFLTFV 73 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~ 73 (97)
++.++|+.+++|+|.
T Consensus 53 ~~~gip~~~qrLif~ 67 (97)
T 1wyw_B 53 QRQGVPMNSLRFLFE 67 (97)
T ss_dssp HHHTCCGGGEEEEET
T ss_pred HHHCCChhhEEEEEC
Confidence 348899999999995
No 74
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=45.44 E-value=4.7 Score=24.74 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=13.9
Q ss_pred cccccccCCCCceEEEEE
Q psy15072 56 SARSQVRFPPGANFLTFV 73 (97)
Q Consensus 56 ~a~~q~~~p~~~~~l~~~ 73 (97)
...++.++|+.+|+|+|.
T Consensus 29 ~I~~~~gip~~~qrLi~~ 46 (88)
T 4fbj_B 29 RVEEKEGIPPQQQRLIYS 46 (88)
T ss_dssp HHHHHHCCCGGGCEEEET
T ss_pred HHHHHHCcChhHEEEEEC
Confidence 334448899999999984
No 75
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=45.42 E-value=4.6 Score=24.68 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=13.1
Q ss_pred cccccCCCCceEEEEE
Q psy15072 58 RSQVRFPPGANFLTFV 73 (97)
Q Consensus 58 ~~q~~~p~~~~~l~~~ 73 (97)
.++.++||.+|+|+|.
T Consensus 35 ~~~~gip~~~qrL~~~ 50 (88)
T 2hj8_A 35 SGLEGVQDDLFWLTFE 50 (88)
T ss_dssp HHHTCSCTTTEEEESS
T ss_pred HHHhCCChhHEEEEEC
Confidence 3448999999999984
No 76
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=45.02 E-value=12 Score=22.35 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=15.8
Q ss_pred ccccCCceeEEEeecccccccccCCCC
Q psy15072 40 RHYCGNKFSSLSVELKSARSQVRFPPG 66 (97)
Q Consensus 40 R~yCGKCg~T~~~~~~~a~~q~~~p~~ 66 (97)
++.|.-|||+|.-.+.. ...+||||
T Consensus 2 ~~~C~~CGyvYd~~~Gd--p~~gi~pG 26 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGD--PDNGISPG 26 (52)
T ss_dssp EEEESSSSCEEETTTCB--GGGTBCTT
T ss_pred cEEeCCCCeEECCCcCC--cccCcCCC
Confidence 67899999987544433 33444554
No 77
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=45.02 E-value=24 Score=26.21 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=26.0
Q ss_pred ccCCCCcCCceEEeceeCCc----cccCCcee---------EEEeeccccccc---ccCCCCc
Q psy15072 21 RECTSEQCGAGVFMAAMSDR----HYCGNKFS---------SLSVELKSARSQ---VRFPPGA 67 (97)
Q Consensus 21 keCP~~eCGaGVFMA~H~DR----~yCGKCg~---------T~~~~~~~a~~q---~~~p~~~ 67 (97)
-.|++ ||.-++...+.++ ..|..|+. +.+.+.+..+.| ...|+|+
T Consensus 135 f~C~~--C~~~~~v~~~~~~~~~P~~Cp~C~~~~f~l~~~~s~f~D~Q~ikiQE~pe~vp~G~ 195 (279)
T 1ltl_A 135 FECRG--CMRHHAVTQSTNMITEPSLCSECGGRSFRLLQDESEFLDTQTLKLQEPLENLSGGE 195 (279)
T ss_dssp EEETT--TCCEEEEECSSSSCCCCSCCTTTCCCCEEECGGGCEEEEEEEEEEECCSTTCCSSC
T ss_pred EEcCC--CCCEEEEEecCCcccCCCcCCCCCCCCcEEeccccEEEeeEEEEEecCcccCCCCC
Confidence 35776 8765555544333 24766764 245566677777 4566665
No 78
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=44.57 E-value=9.6 Score=33.45 Aligned_cols=28 Identities=39% Similarity=0.845 Sum_probs=21.4
Q ss_pred CCCeEEEecccCCCCcCCceEEeceeCCccccCC
Q psy15072 12 ENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGN 45 (97)
Q Consensus 12 enGKI~rlrkeCP~~eCGaGVFMA~H~DR~yCGK 45 (97)
++| -.|+.||. ||.. |-..-.+|-+||-
T Consensus 12 ~~g---~~r~~c~~--c~~~-fwt~~~~r~~cgd 39 (752)
T 2zze_A 12 EEG---WIRXXCXV--CGXP-FWTLDPDRETCGD 39 (752)
T ss_dssp HTT---CEEEECTT--TCCE-EEESCTTCCSCSS
T ss_pred hCC---ceEeeecc--cCcc-eeecCCCcCCCCC
Confidence 466 35689999 9985 6665679999995
No 79
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=44.28 E-value=7.2 Score=23.36 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=12.6
Q ss_pred ccccCCCCceEEEEE
Q psy15072 59 SQVRFPPGANFLTFV 73 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~ 73 (97)
++.++|+.+|+|+|.
T Consensus 41 ~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 41 ALFDVRPECQRLFYR 55 (89)
T ss_dssp HHSCCCTTTEEEEET
T ss_pred HHHCcChhhEEEEEC
Confidence 347899999999984
No 80
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=44.24 E-value=7.3 Score=23.14 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=12.9
Q ss_pred cccccCCCCceEEEEE
Q psy15072 58 RSQVRFPPGANFLTFV 73 (97)
Q Consensus 58 ~~q~~~p~~~~~l~~~ 73 (97)
.++.++|+.+|+|+|.
T Consensus 38 ~~~~gi~~~~qrL~~~ 53 (87)
T 1wh3_A 38 EDQQGLPKKQQQLEFQ 53 (87)
T ss_dssp HHHTCCCTTTEEEEET
T ss_pred HHHhCCChHHEEEEEC
Confidence 3347899999999984
No 81
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=43.95 E-value=6.5 Score=25.49 Aligned_cols=15 Identities=7% Similarity=0.067 Sum_probs=11.6
Q ss_pred CccccCCceeEEEee
Q psy15072 39 DRHYCGNKFSSLSVE 53 (97)
Q Consensus 39 DR~yCGKCg~T~~~~ 53 (97)
.|+.|++||-..+..
T Consensus 66 ~r~FC~~CGs~l~~~ 80 (118)
T 3fac_A 66 KHWFCRTCGIYTHHQ 80 (118)
T ss_dssp EEEEETTTCCEEEEE
T ss_pred eeEECCCCCccccCc
Confidence 588899999777654
No 82
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=43.62 E-value=4.9 Score=29.62 Aligned_cols=18 Identities=11% Similarity=-0.025 Sum_probs=0.0
Q ss_pred cccccccCCCCceEEEEE
Q psy15072 56 SARSQVRFPPGANFLTFV 73 (97)
Q Consensus 56 ~a~~q~~~p~~~~~l~~~ 73 (97)
.+.+.+++||++|+|+|.
T Consensus 29 kI~~keGIP~~qQRLIf~ 46 (189)
T 2xzm_9 29 QISQDMGFEIDMMTLVNN 46 (189)
T ss_dssp ------------------
T ss_pred HHHHHhCcChhHEEEEec
Confidence 444458999999999996
No 83
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=43.28 E-value=5.9 Score=25.38 Aligned_cols=18 Identities=6% Similarity=0.028 Sum_probs=14.0
Q ss_pred cccccccCCCCceEEEEE
Q psy15072 56 SARSQVRFPPGANFLTFV 73 (97)
Q Consensus 56 ~a~~q~~~p~~~~~l~~~ 73 (97)
...+..++|+.+|+|+|.
T Consensus 30 ~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 30 KLAQSISCEESQIKLIYS 47 (106)
T ss_dssp HHHHTTTSCGGGCEEEET
T ss_pred HHHHHHCCChhhEEEEEC
Confidence 334447899999999985
No 84
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=43.13 E-value=9.5 Score=24.11 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=15.0
Q ss_pred ccCCCCcCCceEEeceeCCccccCCceeE
Q psy15072 21 RECTSEQCGAGVFMAAMSDRHYCGNKFSS 49 (97)
Q Consensus 21 keCP~~eCGaGVFMA~H~DR~yCGKCg~T 49 (97)
-.|+. ||.-+-+ .-.|-..|-+||+-
T Consensus 29 Y~C~~--CG~~~e~-~~~d~irCp~CG~R 54 (70)
T 1twf_L 29 YICAE--CSSKLSL-SRTDAVRCKDCGHR 54 (70)
T ss_dssp EECSS--SCCEECC-CTTSTTCCSSSCCC
T ss_pred EECCC--CCCccee-CCCCCccCCCCCce
Confidence 35776 8763221 12455678888873
No 85
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=42.62 E-value=16 Score=24.41 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.1
Q ss_pred eEEEECCCCeEEEecc
Q psy15072 6 QVCNVDENGKIHRLRR 21 (97)
Q Consensus 6 kyYkVdenGKI~rlrk 21 (97)
..+++|+||||++.+-
T Consensus 103 dv~~fd~dGkI~~~~~ 118 (131)
T 3er7_A 103 DIARLNADGKIVYLAN 118 (131)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEEcCCCcEEEEEE
Confidence 5789998899998653
No 86
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=42.40 E-value=7.2 Score=23.94 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=12.5
Q ss_pred ccccCCCCceEEEEE
Q psy15072 59 SQVRFPPGANFLTFV 73 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~ 73 (97)
++.++||.+|+|+|.
T Consensus 43 ~~~gip~~~qrL~~~ 57 (85)
T 2kd0_A 43 PITNVLPRGQKLIFK 57 (85)
T ss_dssp HHHCCCTTTCEEEET
T ss_pred HHHCcChHHEEEEEC
Confidence 347899999999974
No 87
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=42.38 E-value=11 Score=24.74 Aligned_cols=18 Identities=11% Similarity=-0.151 Sum_probs=13.8
Q ss_pred CccccCCceeEEEeeccc
Q psy15072 39 DRHYCGNKFSSLSVELKS 56 (97)
Q Consensus 39 DR~yCGKCg~T~~~~~~~ 56 (97)
.+|.|.-|||+|.-.+..
T Consensus 26 ~~y~C~vCGyvYD~~~Gd 43 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGW 43 (81)
T ss_dssp CEEEETTTCCEEETTTCB
T ss_pred ceEEeCCCCEEEcCCcCC
Confidence 589999999997654443
No 88
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=41.36 E-value=6.2 Score=26.50 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=11.7
Q ss_pred ccccCCCCceEEEE
Q psy15072 59 SQVRFPPGANFLTF 72 (97)
Q Consensus 59 ~q~~~p~~~~~l~~ 72 (97)
+..++||.+|+|+|
T Consensus 58 ~k~Gipp~~QRli~ 71 (105)
T 4dbg_A 58 LDYGFPPVLQQWVI 71 (105)
T ss_dssp HHHCCCGGGEEEEE
T ss_pred HHhCCCHHHEEEec
Confidence 33899999999776
No 89
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.13 E-value=4.9 Score=26.38 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=11.4
Q ss_pred cccCCCCceEEEE
Q psy15072 60 QVRFPPGANFLTF 72 (97)
Q Consensus 60 q~~~p~~~~~l~~ 72 (97)
..++||++|+|+|
T Consensus 41 ~tgIpp~~QkLi~ 53 (100)
T 2dzm_A 41 ELQIPVSKMLLKG 53 (100)
T ss_dssp HHCCCTTTCCEEC
T ss_pred HHCCChhHeEEEc
Confidence 3889999999976
No 90
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=40.80 E-value=11 Score=28.34 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=19.6
Q ss_pred cccCCCCcCCceEEeceeCCcc--ccCCce
Q psy15072 20 RRECTSEQCGAGVFMAAMSDRH--YCGNKF 47 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA~H~DR~--yCGKCg 47 (97)
.+-||+ ||.-+-.....+|. ||.+|.
T Consensus 235 g~pC~~--CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 235 GLPCPA--CGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp TSBCTT--TCCBCEEEESSSCEEEECTTTT
T ss_pred CCCCCC--CCCEeeEEEECCCceEECCCCC
Confidence 366988 98877777777664 888885
No 91
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=40.66 E-value=11 Score=28.25 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=19.1
Q ss_pred ccCCCCcCCceEEeceeCCcc--ccCCce
Q psy15072 21 RECTSEQCGAGVFMAAMSDRH--YCGNKF 47 (97)
Q Consensus 21 keCP~~eCGaGVFMA~H~DR~--yCGKCg 47 (97)
+-||+ ||.-+-.....+|. ||.+|.
T Consensus 243 ~pC~~--CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSR--CGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp SBCTT--TCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCC--CCCEeeEEEECCCceEECCCCC
Confidence 66888 98877777777664 888885
No 92
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=40.62 E-value=11 Score=28.27 Aligned_cols=26 Identities=23% Similarity=0.606 Sum_probs=19.5
Q ss_pred cccCCCCcCCceEEeceeCCcc--ccCCce
Q psy15072 20 RRECTSEQCGAGVFMAAMSDRH--YCGNKF 47 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA~H~DR~--yCGKCg 47 (97)
.+-||+ ||.-+-.....+|. ||.+|.
T Consensus 240 g~pC~~--CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 240 GEPCRV--CGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp TSBCTT--TCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCC--CCCEeeEEEECCCceEECCCCC
Confidence 366988 98877777777664 888884
No 93
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=40.40 E-value=5.2 Score=23.71 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=12.9
Q ss_pred cccccCCCCceEEEEE
Q psy15072 58 RSQVRFPPGANFLTFV 73 (97)
Q Consensus 58 ~~q~~~p~~~~~l~~~ 73 (97)
.+..++|+.+|+|+|.
T Consensus 43 ~~~~gip~~~qrL~~~ 58 (88)
T 3dbh_I 43 EEKEGIPPQQQRLIYS 58 (88)
T ss_dssp HHHHCCCGGGCCEEET
T ss_pred HHHHCcCHHHEEEEEC
Confidence 3347899999999983
No 94
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=40.36 E-value=9.2 Score=22.81 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=16.0
Q ss_pred ccccCCceeEEEeecccccccccCCCCc
Q psy15072 40 RHYCGNKFSSLSVELKSARSQVRFPPGA 67 (97)
Q Consensus 40 R~yCGKCg~T~~~~~~~a~~q~~~p~~~ 67 (97)
++.|--|||+|.-.+. ....+||||.
T Consensus 3 ~y~C~~CGyvYd~~~G--dp~~gi~pGt 28 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKG--DPDSGIKPGT 28 (52)
T ss_dssp CEECSSSCCCCCTTTC--CTTTTCCSSC
T ss_pred cEEeCCCCeEEcCCcC--CcccCcCCCC
Confidence 7889999988644333 3334455543
No 95
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=40.29 E-value=14 Score=28.67 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=21.6
Q ss_pred cccCCCCcCCc--eEEeceeC-CccccCCceeEEEee
Q psy15072 20 RRECTSEQCGA--GVFMAAMS-DRHYCGNKFSSLSVE 53 (97)
Q Consensus 20 rkeCP~~eCGa--GVFMA~H~-DR~yCGKCg~T~~~~ 53 (97)
+..||. ||. .-+.-+|. .-..|+.||+....+
T Consensus 21 ~~~Cp~--C~~~~~~lv~D~~~G~~vC~~CGlVl~e~ 55 (345)
T 4bbr_M 21 VLTCPE--CKVYPPKIVERFSEGDVVCALCGLVLSDK 55 (345)
T ss_dssp -CCCSS--CCCSSCCEEEEGGGTEEEETTTCBEEESC
T ss_pred CCcCCC--CCCCCCceeEECCCCcEEeCCCCCCccCc
Confidence 347998 994 44555554 456899999887544
No 96
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=40.18 E-value=13 Score=24.61 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=16.9
Q ss_pred CccccCCceeEEEeecccccccccCCCC
Q psy15072 39 DRHYCGNKFSSLSVELKSARSQVRFPPG 66 (97)
Q Consensus 39 DR~yCGKCg~T~~~~~~~a~~q~~~p~~ 66 (97)
.+|.|--|||+|.-.... ...+||||
T Consensus 34 ~~y~C~vCGyvYD~~~Gd--p~~gI~pG 59 (87)
T 1s24_A 34 LKWICITCGHIYDEALGD--EAEGFTPG 59 (87)
T ss_dssp CEEEETTTTEEEETTSCC--TTTTCCSC
T ss_pred ceEECCCCCeEecCCcCC--cccCcCCC
Confidence 589999999987544333 33444544
No 97
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=40.13 E-value=11 Score=24.00 Aligned_cols=20 Identities=30% Similarity=0.914 Sum_probs=12.7
Q ss_pred ccCCCCcCCceEEeceeC--CccccC
Q psy15072 21 RECTSEQCGAGVFMAAMS--DRHYCG 44 (97)
Q Consensus 21 keCP~~eCGaGVFMA~H~--DR~yCG 44 (97)
-.| + || ++|.+.|- |+|.|.
T Consensus 30 f~C-r--Cg-~~FC~~HR~~e~H~C~ 51 (64)
T 1wg2_A 30 FKC-K--CG-STFCGSHRYPEKHECS 51 (64)
T ss_dssp EEC-T--TS-CEECSSSCSSTTTTCC
T ss_pred eEe-e--cC-CEecccCCCccccCCC
Confidence 356 5 66 67777773 666663
No 98
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=39.85 E-value=6.9 Score=22.92 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=13.4
Q ss_pred ccccccCCCCceEEEEE
Q psy15072 57 ARSQVRFPPGANFLTFV 73 (97)
Q Consensus 57 a~~q~~~p~~~~~l~~~ 73 (97)
..++..+|+.+|+|+|.
T Consensus 33 i~~~~~ip~~~qrL~~~ 49 (85)
T 3n3k_B 33 IQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp HHHHHCCCGGGEEEEET
T ss_pred HHHHHCCCHHHEEEEEC
Confidence 33448899999999983
No 99
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=39.01 E-value=12 Score=28.18 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=19.4
Q ss_pred ecccCCCCcCCceEEeceeCCcc--ccCCce
Q psy15072 19 LRRECTSEQCGAGVFMAAMSDRH--YCGNKF 47 (97)
Q Consensus 19 lrkeCP~~eCGaGVFMA~H~DR~--yCGKCg 47 (97)
..+-||+ ||.-+-.....+|. ||.+|.
T Consensus 244 ~g~pC~~--CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 244 QGNPCKR--CGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp TTSBCTT--TCCBCEEEEETTEEEEECTTTC
T ss_pred CcCCCCC--CCCeEEEEEECCCCeEECCCCC
Confidence 3367988 98877766666664 788884
No 100
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.93 E-value=9.3 Score=22.12 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=13.0
Q ss_pred cccccCCCCceEEEEE
Q psy15072 58 RSQVRFPPGANFLTFV 73 (97)
Q Consensus 58 ~~q~~~p~~~~~l~~~ 73 (97)
.++.++|+.+|+|+|.
T Consensus 38 ~~~~~i~~~~qrL~~~ 53 (81)
T 2dzi_A 38 SEKLNVPVRQQRLLFK 53 (81)
T ss_dssp HHHTCCCTTTCEEEET
T ss_pred HHHHCcCHHHEEEEEC
Confidence 3447899999999983
No 101
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.77 E-value=5.7 Score=24.07 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=21.8
Q ss_pred ecccCCCCcCCceEEeceeCCccccCC--ceeEEE
Q psy15072 19 LRRECTSEQCGAGVFMAAMSDRHYCGN--KFSSLS 51 (97)
Q Consensus 19 lrkeCP~~eCGaGVFMA~H~DR~yCGK--Cg~T~~ 51 (97)
.-|.||+ |+.-|--...=+...|.+ |+..+.
T Consensus 5 ~~k~CP~--C~~~Iek~~GCnhmtC~~~~C~~~FC 37 (60)
T 1wd2_A 5 NTKECPK--CHVTIEKDGGCNHMVCRNQNCKAEFC 37 (60)
T ss_dssp CCCCCTT--TCCCCSSCCSCCSSSCCSSGGGSCCS
T ss_pred cceECcC--CCCeeEeCCCCCcEEECCCCcCCEEe
Confidence 3478998 988665555557778888 875443
No 102
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=38.75 E-value=29 Score=25.34 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=23.3
Q ss_pred cC--CCCcCCceEEec---eeCCc----cccCCceeE----------EEeeccccccc---ccCCCCc
Q psy15072 22 EC--TSEQCGAGVFMA---AMSDR----HYCGNKFSS----------LSVELKSARSQ---VRFPPGA 67 (97)
Q Consensus 22 eC--P~~eCGaGVFMA---~H~DR----~yCGKCg~T----------~~~~~~~a~~q---~~~p~~~ 67 (97)
.| ++ ||.-+... .+.++ ..|..|+.. .+.+.+..+.| ...|+|+
T Consensus 143 ~C~~~~--C~~~~~~~~~~~~~~~~~~P~~Cp~C~~~~~~~l~~~~s~f~D~Q~ikiQE~pe~vp~G~ 208 (268)
T 2vl6_A 143 KHIHPD--CMQEFEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQ 208 (268)
T ss_dssp EEECTT--CCCEEESSTTSCCCTTCCCCSBCTTTCCBCEEEECGGGCEEEEEEEEEEECCGGGSCTTS
T ss_pred ECCCCC--CCCEEeeeecccCCCcccCCccCCCCCCCCCEEEecCccEEEeeEEEEEEeCCCCCCCCC
Confidence 57 55 77654443 33222 236666642 33455566666 4567666
No 103
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=38.44 E-value=7.5 Score=22.34 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=13.0
Q ss_pred cccccCCCCceEEEEE
Q psy15072 58 RSQVRFPPGANFLTFV 73 (97)
Q Consensus 58 ~~q~~~p~~~~~l~~~ 73 (97)
.++.++|+.+|+|+|.
T Consensus 34 ~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 34 NKANGIPVANQRLIYS 49 (77)
T ss_dssp HHHHCCCGGGEEEEET
T ss_pred HHHhCCCHHHEEEEEC
Confidence 3447899999999984
No 104
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=38.43 E-value=15 Score=22.23 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=15.8
Q ss_pred ccccCCceeEEEeecccccccccCCCC
Q psy15072 40 RHYCGNKFSSLSVELKSARSQVRFPPG 66 (97)
Q Consensus 40 R~yCGKCg~T~~~~~~~a~~q~~~p~~ 66 (97)
++.|.-|||.|.-.....+ .+||||
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~--~gi~pG 27 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPD--DGVNPG 27 (54)
T ss_dssp CEEETTTCCEECTTTCBGG--GTBCTT
T ss_pred ceECCCCCeEECCCcCCcc--cCcCCC
Confidence 6789999988765444333 344444
No 105
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=37.87 E-value=7.7 Score=24.74 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=13.9
Q ss_pred cccccccCCCCceEEEEE
Q psy15072 56 SARSQVRFPPGANFLTFV 73 (97)
Q Consensus 56 ~a~~q~~~p~~~~~l~~~ 73 (97)
...+..++|+.+|+|+|.
T Consensus 56 ~I~~~~gip~~~QrLi~~ 73 (101)
T 3m63_B 56 AINKANGIPVANQRLIYS 73 (101)
T ss_dssp HHHHHHSCCSTTCCEEET
T ss_pred HHHHHHCcChHHEEEEEC
Confidence 333448999999999984
No 106
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=37.84 E-value=13 Score=27.72 Aligned_cols=25 Identities=24% Similarity=0.573 Sum_probs=18.8
Q ss_pred ccCCCCcCCceEEeceeCCcc--ccCCce
Q psy15072 21 RECTSEQCGAGVFMAAMSDRH--YCGNKF 47 (97)
Q Consensus 21 keCP~~eCGaGVFMA~H~DR~--yCGKCg 47 (97)
+-||+ ||.-+-.....+|- ||.+|.
T Consensus 235 ~pC~~--CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCER--CGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTT--TCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCC--CCCEeEEEEECCCCeEECCCCC
Confidence 56988 98877777777664 888884
No 107
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=37.82 E-value=7.2 Score=24.25 Aligned_cols=14 Identities=7% Similarity=0.162 Sum_probs=12.2
Q ss_pred cccCCCCceEEEEE
Q psy15072 60 QVRFPPGANFLTFV 73 (97)
Q Consensus 60 q~~~p~~~~~l~~~ 73 (97)
+.++|+.+|+|+|.
T Consensus 50 ~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 50 LEGIAPEDQVVLLA 63 (93)
T ss_dssp HHTCCGGGCEEEET
T ss_pred HhCcChhHEEEEEC
Confidence 37899999999985
No 108
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=37.56 E-value=17 Score=19.53 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=16.5
Q ss_pred ccCCCCcCCceEEeceeCCccccCCcee
Q psy15072 21 RECTSEQCGAGVFMAAMSDRHYCGNKFS 48 (97)
Q Consensus 21 keCP~~eCGaGVFMA~H~DR~yCGKCg~ 48 (97)
..||. ||.=-| .-|..|-||+.
T Consensus 6 W~C~~--C~~~Nf----a~r~~C~~C~~ 27 (32)
T 2lk0_A 6 WLCNK--CCLNNF----RKRLKCFRCGA 27 (32)
T ss_dssp EECTT--TCCEEE----TTCCBCTTTCC
T ss_pred CCcCc--CcCCcC----hhcceecCCCC
Confidence 67987 986333 45999999984
No 109
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=37.17 E-value=8.1 Score=21.89 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=13.0
Q ss_pred cccccCCCCceEEEEE
Q psy15072 58 RSQVRFPPGANFLTFV 73 (97)
Q Consensus 58 ~~q~~~p~~~~~l~~~ 73 (97)
.++.++|+.+++|+|.
T Consensus 31 ~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 31 EEKEGIPPQQQRLIYS 46 (76)
T ss_dssp HHHHCCCGGGEEEEET
T ss_pred HHHHCcChHHEEEEEC
Confidence 3447899999999984
No 110
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=37.01 E-value=7.6 Score=22.66 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=12.9
Q ss_pred ccccccCCCCceEEEE
Q psy15072 57 ARSQVRFPPGANFLTF 72 (97)
Q Consensus 57 a~~q~~~p~~~~~l~~ 72 (97)
..++..+|+.+|+|+|
T Consensus 33 i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 33 IQDKEGIPPDQQRLIF 48 (85)
T ss_dssp HHHHHCCCGGGCEEEE
T ss_pred HHHHHCcChHHEEEEE
Confidence 3344789999999998
No 111
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=36.62 E-value=7.7 Score=24.17 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=13.3
Q ss_pred ccccccCCCCceEEEEE
Q psy15072 57 ARSQVRFPPGANFLTFV 73 (97)
Q Consensus 57 a~~q~~~p~~~~~l~~~ 73 (97)
..++.++|+.+|+|+|.
T Consensus 52 I~~~~gip~~~qrLi~~ 68 (98)
T 4hcn_B 52 IQDKEGIPPDQQRLIFA 68 (98)
T ss_dssp HHHHHCCCGGGCEEEET
T ss_pred HHHHhCCChhHEEEEEC
Confidence 33448899999999983
No 112
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=36.41 E-value=30 Score=20.72 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=21.7
Q ss_pred cCCCCcCCceEEeceeCCccccC--CceeEEEeecc
Q psy15072 22 ECTSEQCGAGVFMAAMSDRHYCG--NKFSSLSVELK 55 (97)
Q Consensus 22 eCP~~eCGaGVFMA~H~DR~yCG--KCg~T~~~~~~ 55 (97)
-||. |....-.. .+...|. .|++.|-....
T Consensus 12 ~CP~--c~~~L~~~--~~~L~C~~~~c~~~YPI~dG 43 (56)
T 2kpi_A 12 ACPA--CHAPLEER--DAELICTGQDCGLAYPVRDG 43 (56)
T ss_dssp CCSS--SCSCEEEE--TTEEEECSSSCCCEEEEETT
T ss_pred eCCC--CCCcceec--CCEEEcCCcCCCcEEeeECC
Confidence 5998 98754433 3788999 99998866543
No 113
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=36.29 E-value=7.9 Score=23.59 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.0
Q ss_pred cccccCCCCceEEEEE
Q psy15072 58 RSQVRFPPGANFLTFV 73 (97)
Q Consensus 58 ~~q~~~p~~~~~l~~~ 73 (97)
.+..++|+.+|+|+|.
T Consensus 48 ~~~~gip~~~qrL~~~ 63 (91)
T 3v6c_B 48 QDKEGIPPDQQRLIFA 63 (91)
T ss_dssp HHHHCCCGGGCEEEET
T ss_pred HhhhCCChhhEEEEEC
Confidence 3348999999999984
No 114
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=36.29 E-value=11 Score=23.29 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=11.3
Q ss_pred ccccCCCCceEEE
Q psy15072 59 SQVRFPPGANFLT 71 (97)
Q Consensus 59 ~q~~~p~~~~~l~ 71 (97)
+..++||.+|+|+
T Consensus 39 ~~~gip~~~QkLi 51 (90)
T 1v5t_A 39 TLTGVLPERQKLL 51 (90)
T ss_dssp HHTCCCTTTCEEE
T ss_pred HHHCcCHHHeEEE
Confidence 3488999999999
No 115
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=35.34 E-value=22 Score=25.03 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=21.5
Q ss_pred ecccCCCCcCCceEEeceeCCccccCCceeEEEee
Q psy15072 19 LRRECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVE 53 (97)
Q Consensus 19 lrkeCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~ 53 (97)
+.-.|++ ||. -|-.-.+-..|-+||.++..+
T Consensus 139 v~a~~~~--~g~--~m~~~~~~~~cp~~g~~e~RK 169 (179)
T 3m7n_A 139 LRALCSN--CKT--EMVREGDILKCPECGRVEKRK 169 (179)
T ss_dssp EECBCTT--TCC--BCEECSSSEECSSSCCEECCC
T ss_pred EEecccc--cCC--ceEECCCEEECCCCCCEEEEe
Confidence 3356876 887 444444788999999987644
No 116
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=35.12 E-value=22 Score=23.22 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=20.0
Q ss_pred cCCCCcCCce----EEec--eeCCccccCCceeEEEee
Q psy15072 22 ECTSEQCGAG----VFMA--AMSDRHYCGNKFSSLSVE 53 (97)
Q Consensus 22 eCP~~eCGaG----VFMA--~H~DR~yCGKCg~T~~~~ 53 (97)
.||. |+.. |-|- +-.-+..|+.||..+..+
T Consensus 25 ~CPf--Cnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~ 60 (85)
T 1wii_A 25 TCPF--CNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60 (85)
T ss_dssp CCTT--TCCSSCEEEEEETTTTEEEEEESSSCCEEEEE
T ss_pred cCCC--CCCCCeEEEEEEccCCEEEEEcccCCCeEEec
Confidence 5998 9875 4442 112467999999887554
No 117
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=34.88 E-value=59 Score=18.73 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=17.9
Q ss_pred cccCCCCcCCce--EEeceeC---C-----ccccCCceeEE
Q psy15072 20 RRECTSEQCGAG--VFMAAMS---D-----RHYCGNKFSSL 50 (97)
Q Consensus 20 rkeCP~~eCGaG--VFMA~H~---D-----R~yCGKCg~T~ 50 (97)
...||+ ||.. +|+-... | .+.|-+||++.
T Consensus 15 ~~~Cp~--Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 15 KITCPK--CGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp ECCCTT--TCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred EeECCC--CCCCEEEEEEeecccCCCCCcEEEEcCCCCCEe
Confidence 577998 9863 3332221 1 36899998865
No 118
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=34.82 E-value=7.9 Score=24.44 Aligned_cols=17 Identities=6% Similarity=0.243 Sum_probs=13.5
Q ss_pred ccccccCCCCceEEEEE
Q psy15072 57 ARSQVRFPPGANFLTFV 73 (97)
Q Consensus 57 a~~q~~~p~~~~~l~~~ 73 (97)
..++.++|+.+|+|+|.
T Consensus 41 I~~~~gip~~~qrL~~~ 57 (102)
T 1v5o_A 41 CELESGVPAEEAQIVYM 57 (102)
T ss_dssp HHHHTCCCGGGBCEEET
T ss_pred HHHHHCcChHHeEEEEC
Confidence 33448999999999985
No 119
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=34.56 E-value=12 Score=26.13 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=13.5
Q ss_pred ccccccCCCCceEEEEE
Q psy15072 57 ARSQVRFPPGANFLTFV 73 (97)
Q Consensus 57 a~~q~~~p~~~~~l~~~ 73 (97)
..++.++||.+|+|+|.
T Consensus 30 I~~~~gip~~~QrLi~~ 46 (169)
T 3l0w_B 30 IQDKEGIPPDQQRLIFA 46 (169)
T ss_dssp HHHHHCCCTTTEEEEET
T ss_pred HHHHHCcCHHHEEEEEC
Confidence 33448999999999984
No 120
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=34.50 E-value=12 Score=24.00 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=12.7
Q ss_pred ccccCCCCceEEEEE
Q psy15072 59 SQVRFPPGANFLTFV 73 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~ 73 (97)
++.++|+.+|+|+|.
T Consensus 67 ~~~gip~~~QrL~~~ 81 (115)
T 1we7_A 67 EATGMPAGKQKLQYE 81 (115)
T ss_dssp HHSSCCTTTEEEEET
T ss_pred HHHCCChHHEEEEEC
Confidence 337999999999984
No 121
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.26 E-value=14 Score=23.51 Aligned_cols=20 Identities=30% Similarity=0.707 Sum_probs=12.1
Q ss_pred ccCCCCcCCceEEeceeC--CccccC
Q psy15072 21 RECTSEQCGAGVFMAAMS--DRHYCG 44 (97)
Q Consensus 21 keCP~~eCGaGVFMA~H~--DR~yCG 44 (97)
=.| + || ++|-+.|- |+|.|.
T Consensus 30 f~C-r--Cg-~~FC~~HRy~e~H~C~ 51 (64)
T 1wfh_A 30 FMC-R--CG-TTFCGSHRYPEVHGCT 51 (64)
T ss_dssp EEC-S--SS-CEECTTTCSTTTTTCC
T ss_pred EEe-e--cC-CEeccccCCcccCCCC
Confidence 346 4 66 57777773 566653
No 122
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=33.26 E-value=9.4 Score=23.30 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=13.4
Q ss_pred ccccccCCCCceEEEEE
Q psy15072 57 ARSQVRFPPGANFLTFV 73 (97)
Q Consensus 57 a~~q~~~p~~~~~l~~~ 73 (97)
..++.++|+.+++|+|.
T Consensus 39 I~~~~gip~~~qrL~~~ 55 (88)
T 1sif_A 39 IQDKEGIPPDQQRLIFA 55 (88)
T ss_dssp HHHHHCCCGGGCEEEET
T ss_pred HHHHHCcChhhEEEEEC
Confidence 33447899999999984
No 123
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.23 E-value=8 Score=24.44 Aligned_cols=15 Identities=7% Similarity=0.067 Sum_probs=12.5
Q ss_pred ccccCCCCceEEEEE
Q psy15072 59 SQVRFPPGANFLTFV 73 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~ 73 (97)
+..++|+.+|+|+|.
T Consensus 39 ~~tgip~~~QkLi~~ 53 (96)
T 1wgg_A 39 ALTGVQPARQKVMVK 53 (96)
T ss_dssp HHTCCCTTTSCCEET
T ss_pred HHHCcCHHHeEEEEC
Confidence 348899999999973
No 124
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=33.20 E-value=14 Score=28.21 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=19.4
Q ss_pred cccCCCCcCCce--EEeceeC-CccccCCceeEE
Q psy15072 20 RRECTSEQCGAG--VFMAAMS-DRHYCGNKFSSL 50 (97)
Q Consensus 20 rkeCP~~eCGaG--VFMA~H~-DR~yCGKCg~T~ 50 (97)
...||. ||.. -+.-+|. .-..|+.||+..
T Consensus 21 ~~~Cp~--Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 21 VLTCPE--CKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCCST--TCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred CCcCcC--CCCCCCceEEECCCCCEecCCCCeEc
Confidence 457998 9874 1333443 356899999865
No 125
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=32.65 E-value=25 Score=24.10 Aligned_cols=29 Identities=31% Similarity=0.680 Sum_probs=21.0
Q ss_pred CCeEEEecccCCCCcCCceEEeceeCCccccCCceeE
Q psy15072 13 NGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSS 49 (97)
Q Consensus 13 nGKI~rlrkeCP~~eCGaGVFMA~H~DR~yCGKCg~T 49 (97)
+||+. ...|++ ||.= .|..|..|.+|+..
T Consensus 42 ~grL~--~~rC~~--CG~~----~~PPr~~Cp~C~s~ 70 (145)
T 3irb_A 42 QNKII--GSKCSK--CGRI----FVPARSYCEHCFVK 70 (145)
T ss_dssp TTCCE--EEECTT--TCCE----EESCCSEETTTTEE
T ss_pred cCeEE--EEEeCC--CCcE----EcCchhhCcCCCCC
Confidence 46544 467998 9972 34569999999965
No 126
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=32.40 E-value=11 Score=24.33 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=12.6
Q ss_pred ccccCCCCceEEEEE
Q psy15072 59 SQVRFPPGANFLTFV 73 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~ 73 (97)
++.++||.+|+|+|.
T Consensus 67 ~~~gip~~~QrLi~~ 81 (111)
T 3vdz_A 67 DKEGIPPDQQRLIFA 81 (111)
T ss_dssp HHHCCCGGGEEEEET
T ss_pred HHhCCChHHEEEEEC
Confidence 347999999999983
No 127
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=32.21 E-value=11 Score=23.94 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=12.5
Q ss_pred ccccCCCCceEEEEE
Q psy15072 59 SQVRFPPGANFLTFV 73 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~ 73 (97)
++.++|+.+|+|+|.
T Consensus 53 ~~~gip~~~QrLi~~ 67 (100)
T 1yqb_A 53 QRFKAHPDQLVLIFA 67 (100)
T ss_dssp HHHTCCGGGEEEEET
T ss_pred HHHCcChhhEEEEEC
Confidence 347899999999984
No 128
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=32.14 E-value=10 Score=24.22 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=12.7
Q ss_pred ccccCCCCceEEEEE
Q psy15072 59 SQVRFPPGANFLTFV 73 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~ 73 (97)
+..++|+.+|+|+|.
T Consensus 63 ~~~gip~~~QrL~~~ 77 (111)
T 1we6_A 63 GEIQIPANKQKLSGK 77 (111)
T ss_dssp HHTTCCTTTSEEECS
T ss_pred HHHCCCHHHeEEEEC
Confidence 348999999999984
No 129
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=32.09 E-value=11 Score=21.31 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=12.9
Q ss_pred cccccCCCCceEEEEE
Q psy15072 58 RSQVRFPPGANFLTFV 73 (97)
Q Consensus 58 ~~q~~~p~~~~~l~~~ 73 (97)
.++.++|+..++|+|.
T Consensus 31 ~~~~~i~~~~q~L~~~ 46 (76)
T 3a9j_A 31 QDKEGIPPDQQRLIFA 46 (76)
T ss_dssp HHHHCCCGGGEEEEET
T ss_pred HHHHCcCHHHeEEEEC
Confidence 3447899999999983
No 130
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.79 E-value=15 Score=23.88 Aligned_cols=15 Identities=33% Similarity=0.921 Sum_probs=9.0
Q ss_pred CCceEEeceeC--Ccccc
Q psy15072 28 CGAGVFMAAMS--DRHYC 43 (97)
Q Consensus 28 CGaGVFMA~H~--DR~yC 43 (97)
|| ++|.+.|- ++|.|
T Consensus 44 Cg-~~FCs~HRy~e~H~C 60 (74)
T 1wfp_A 44 CG-STFCGTHRYPESHEC 60 (74)
T ss_dssp TS-CEECTTTCSTTTSCC
T ss_pred cC-CEeccccCCCcCCCC
Confidence 55 56666663 56655
No 131
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.71 E-value=15 Score=23.33 Aligned_cols=15 Identities=20% Similarity=0.301 Sum_probs=12.6
Q ss_pred ccccCCCCceEEEEE
Q psy15072 59 SQVRFPPGANFLTFV 73 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~ 73 (97)
+..++|+.+|+|+|.
T Consensus 55 ~~~gip~~~qrLi~~ 69 (106)
T 1ttn_A 55 AAEGVEPGSQRWFFS 69 (106)
T ss_dssp HTTCCCSTTCEEEET
T ss_pred HHHCcCcccEEEEEC
Confidence 347899999999984
No 132
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.59 E-value=9.7 Score=24.33 Aligned_cols=18 Identities=39% Similarity=0.936 Sum_probs=11.4
Q ss_pred cCCCCcCCceEEeceeC--Ccccc
Q psy15072 22 ECTSEQCGAGVFMAAMS--DRHYC 43 (97)
Q Consensus 22 eCP~~eCGaGVFMA~H~--DR~yC 43 (97)
.| + || ++|-+.|- |+|.|
T Consensus 34 ~C-r--Cg-~~FC~~HRy~e~H~C 53 (67)
T 1x4w_A 34 SC-R--CG-YVFCMLHRLPEQHDC 53 (67)
T ss_dssp CC-S--SS-CCCCTTTCSTGGGTC
T ss_pred Ee-c--CC-CEehhccCCccccCC
Confidence 56 5 66 57777774 56655
No 133
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.95 E-value=9.9 Score=23.28 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=12.1
Q ss_pred cccCCCCceEEEEE
Q psy15072 60 QVRFPPGANFLTFV 73 (97)
Q Consensus 60 q~~~p~~~~~l~~~ 73 (97)
+.++|+.+|+|+|.
T Consensus 49 ~~gip~~~qrL~~~ 62 (96)
T 1wx8_A 49 YLHCNADRLVLIFT 62 (96)
T ss_dssp HTCSCTTTBCCEET
T ss_pred HhCCCHHHEEEEEC
Confidence 37899999999984
No 134
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=30.61 E-value=30 Score=20.25 Aligned_cols=16 Identities=6% Similarity=-0.076 Sum_probs=11.3
Q ss_pred CccccCCceeEEEeec
Q psy15072 39 DRHYCGNKFSSLSVEL 54 (97)
Q Consensus 39 DR~yCGKCg~T~~~~~ 54 (97)
.++.|.-|||+|...+
T Consensus 3 ~~y~C~vCGyvyd~~~ 18 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPAE 18 (46)
T ss_dssp CCEEETTTCCEECGGG
T ss_pred CEEECCCCCeEEeCCc
Confidence 3678888888876443
No 135
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=30.28 E-value=16 Score=22.49 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=11.4
Q ss_pred ccCCCCceEEEEE
Q psy15072 61 VRFPPGANFLTFV 73 (97)
Q Consensus 61 ~~~p~~~~~l~~~ 73 (97)
.++|+.+|+|+|.
T Consensus 37 ~gip~~~qrLi~~ 49 (95)
T 1uel_A 37 DAFPVAGQKLIYA 49 (95)
T ss_dssp TTCCTTTEEEEET
T ss_pred CCCChhhEEEEEC
Confidence 4799999999984
No 136
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=29.87 E-value=13 Score=21.81 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=11.4
Q ss_pred ccCCCCceEEEEE
Q psy15072 61 VRFPPGANFLTFV 73 (97)
Q Consensus 61 ~~~p~~~~~l~~~ 73 (97)
.++|+.+|+|+|.
T Consensus 42 ~gip~~~qrLi~~ 54 (85)
T 2wyq_A 42 DAFPVAGQKLIYA 54 (85)
T ss_dssp TTCCGGGEEEEET
T ss_pred cCCCHHHeEEEEC
Confidence 5799999999984
No 137
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=29.64 E-value=13 Score=29.26 Aligned_cols=28 Identities=18% Similarity=0.538 Sum_probs=18.2
Q ss_pred ccCCCCcCCceEEeceeC--C----ccccCCceeEEEe
Q psy15072 21 RECTSEQCGAGVFMAAMS--D----RHYCGNKFSSLSV 52 (97)
Q Consensus 21 keCP~~eCGaGVFMA~H~--D----R~yCGKCg~T~~~ 52 (97)
-.||+ ||..-. +|+ + -.+|..|+..|-.
T Consensus 35 ~yCPn--CG~~~l--~~f~nN~PVaDF~C~~C~EeyEL 68 (257)
T 4esj_A 35 SYCPN--CGNNPL--NHFENNRPVADFYCNHCSEEFEL 68 (257)
T ss_dssp CCCTT--TCCSSC--EEC----CCCEEECTTTCCEEEE
T ss_pred CcCCC--CCChhh--hhccCCCcccccccCCcchhhee
Confidence 46999 998432 232 2 3799999966543
No 138
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=29.56 E-value=13 Score=23.57 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=12.6
Q ss_pred ccccCCCCceEEEEE
Q psy15072 59 SQVRFPPGANFLTFV 73 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~ 73 (97)
++.++|+.+|+|+|.
T Consensus 56 ~~~gip~~~qrLi~~ 70 (101)
T 2klc_A 56 KRFKSHTDQLVLIFA 70 (101)
T ss_dssp HHHTCCGGGEEEEET
T ss_pred HHHCcChhhEEEEEC
Confidence 347999999999984
No 139
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=35.54 E-value=11 Score=21.63 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=15.1
Q ss_pred cccccccccCCCCceEEEEE
Q psy15072 54 LKSARSQVRFPPGANFLTFV 73 (97)
Q Consensus 54 ~~~a~~q~~~p~~~~~l~~~ 73 (97)
++...++.++|+.+|+|+|.
T Consensus 27 K~~i~~~~gi~~~~qrL~~~ 46 (76)
T 3b1l_X 27 KEVVAKQQGVPADQLRVIFA 46 (76)
Confidence 33444558899999999985
No 140
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.38 E-value=23 Score=25.33 Aligned_cols=29 Identities=24% Similarity=0.477 Sum_probs=19.3
Q ss_pred ccCCCCcCCceEEeceeCCccccCCceeEEEee
Q psy15072 21 RECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVE 53 (97)
Q Consensus 21 keCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~ 53 (97)
..|+. |+.. | .--.-||+|-.||..+...
T Consensus 162 ~~C~~--C~~~-F-~~~~rrhhCr~CG~v~C~~ 190 (220)
T 1dvp_A 162 RVCHR--CRVE-F-TFTNRKHHCRNCGQVFCGQ 190 (220)
T ss_dssp SBCTT--TCCB-C-CSSSCCEECTTTCCEECST
T ss_pred CccCC--CCCc-c-CCcccccccCCcCCEEChH
Confidence 57887 8763 2 2223578999999877654
No 141
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=28.58 E-value=13 Score=24.07 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=13.1
Q ss_pred cccccCCCCceEEEEE
Q psy15072 58 RSQVRFPPGANFLTFV 73 (97)
Q Consensus 58 ~~q~~~p~~~~~l~~~ 73 (97)
.++.++||.+|+|+|.
T Consensus 40 ~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 40 QDKEGIPPDQQRLIWA 55 (114)
T ss_dssp HHHHCCCGGGEEEEET
T ss_pred HHHHCcChHHEEEEEC
Confidence 3447899999999984
No 142
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.19 E-value=29 Score=23.25 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=9.7
Q ss_pred CCCCceEEEEE
Q psy15072 63 FPPGANFLTFV 73 (97)
Q Consensus 63 ~p~~~~~l~~~ 73 (97)
+|+++++|||+
T Consensus 60 ~p~~qqrLIy~ 70 (116)
T 1wgh_A 60 SSPNILRLIYQ 70 (116)
T ss_dssp CCTTTEEEEET
T ss_pred CChHHEEEEEC
Confidence 57999999996
No 143
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Probab=27.90 E-value=55 Score=24.68 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=21.7
Q ss_pred ccCCCCceEEEEEecceeeeeeee---eEEEe
Q psy15072 61 VRFPPGANFLTFVLGTASFLVSYP---VLLFD 89 (97)
Q Consensus 61 ~~~p~~~~~l~~~~~~~~~~~~~~---~~~~~ 89 (97)
...|++.-.++|. |++++++.++ .+|+|
T Consensus 55 ~~~~~~~~~it~l-G~s~~lI~~~~g~~iLiD 85 (379)
T 3bv6_A 55 TVVEPNTFSMWWL-GCTGIWLKSAGNTNLSID 85 (379)
T ss_dssp CCCCTTCEEEEEE-ETTEEEEEETTCCEEEES
T ss_pred ccCCCCceEEEEe-cccEEEEEeCCCCEEEEc
Confidence 3456676667765 9999999886 78999
No 144
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=27.73 E-value=14 Score=22.30 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=13.4
Q ss_pred ccccccCCCCceEEEEE
Q psy15072 57 ARSQVRFPPGANFLTFV 73 (97)
Q Consensus 57 a~~q~~~p~~~~~l~~~ 73 (97)
..+..++|+..++|+|.
T Consensus 31 i~~~~gip~~~qrL~~~ 47 (96)
T 3k9o_B 31 IQDKEGIPPDQQRLIFA 47 (96)
T ss_dssp HHHHHCCCGGGEEEEET
T ss_pred HHhhhCCChhHEEEEEC
Confidence 33448999999999983
No 145
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=27.51 E-value=40 Score=22.08 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=12.3
Q ss_pred eEEEECCCCeEEEec
Q psy15072 6 QVCNVDENGKIHRLR 20 (97)
Q Consensus 6 kyYkVdenGKI~rlr 20 (97)
..+++++||||...+
T Consensus 100 ~v~~~~~dGkI~~~~ 114 (143)
T 3mso_A 100 DMIRFDDDGRIVDFE 114 (143)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEECCCCcEEEEE
Confidence 568898889999875
No 146
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=27.45 E-value=15 Score=22.54 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=13.3
Q ss_pred ccccccCCCCceEEEEE
Q psy15072 57 ARSQVRFPPGANFLTFV 73 (97)
Q Consensus 57 a~~q~~~p~~~~~l~~~ 73 (97)
..++.++|+.+|+|+|.
T Consensus 30 I~~~~gi~~~~qrL~~~ 46 (98)
T 1yx5_B 30 IQDKEGIPPDQQRLIFA 46 (98)
T ss_dssp HHHHTCCCGGGEEEEET
T ss_pred HHHHHCcChhhEEEEEC
Confidence 33447899999999983
No 147
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=26.96 E-value=45 Score=21.78 Aligned_cols=8 Identities=13% Similarity=0.189 Sum_probs=4.2
Q ss_pred ccCCceeE
Q psy15072 42 YCGNKFSS 49 (97)
Q Consensus 42 yCGKCg~T 49 (97)
+|..|+..
T Consensus 20 ~C~~C~~~ 27 (81)
T 2jrp_A 20 HCETCAKD 27 (81)
T ss_dssp ECTTTCCE
T ss_pred ECcccccc
Confidence 35555543
No 148
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=26.71 E-value=62 Score=20.65 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=24.3
Q ss_pred ecccCCCCcCCceEEeceeCC-ccccCCceeEEEee
Q psy15072 19 LRRECTSEQCGAGVFMAAMSD-RHYCGNKFSSLSVE 53 (97)
Q Consensus 19 lrkeCP~~eCGaGVFMA~H~D-R~yCGKCg~T~~~~ 53 (97)
++-.||. |+.---.=+|.. --.|..||.++..-
T Consensus 6 m~VKCp~--C~niq~VFShA~tvV~C~~Cg~~L~~P 39 (66)
T 1qxf_A 6 VKVKCPD--CEHEQVIFDHPSTIVKCIICGRTVAEP 39 (66)
T ss_dssp EEEECTT--TCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred EEEECCC--CCCceEEEecCceEEEcccCCCEEeec
Confidence 4567998 998655557764 55999999888643
No 149
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=26.67 E-value=60 Score=20.87 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=12.1
Q ss_pred ceEEEECCCCeEEEecccCCCCcCCceEEece
Q psy15072 5 WQVCNVDENGKIHRLRRECTSEQCGAGVFMAA 36 (97)
Q Consensus 5 LkyYkVdenGKI~rlrkeCP~~eCGaGVFMA~ 36 (97)
..++++.+ |+.. .||. ||. +|...
T Consensus 46 v~W~~l~~-g~~~----RC~e--CG~-~fkL~ 69 (80)
T 2odx_A 46 IMWLKPTV-NEVA----RCWE--CGS-VYKLN 69 (80)
T ss_dssp CEEECCCT-TCEE----ECSS--SCC-EEEEC
T ss_pred EEEEEecC-CCCe----ECCC--CCe-EEEEE
Confidence 34555553 4433 3665 664 55543
No 150
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=26.30 E-value=37 Score=23.40 Aligned_cols=56 Identities=14% Similarity=0.266 Sum_probs=32.2
Q ss_pred CeEEEec---ccCCCCcCCceEEeceeCCccccCCceeEEEeecccccccccCCCCceEEEE--Eecceeee
Q psy15072 14 GKIHRLR---RECTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELKSARSQVRFPPGANFLTF--VLGTASFL 80 (97)
Q Consensus 14 GKI~rlr---keCP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~~~~a~~q~~~p~~~~~l~~--~~~~~~~~ 80 (97)
|-|.|.. ..||. |.. -|..-...++|..|+..+ +.+..=|+|.+-|-. |-|.++|+
T Consensus 23 ~~~~~~~~M~~~CP~--Cq~--eL~~~g~~~hC~~C~~~f-------~~~a~CPdC~q~LevLkACGAvdYF 83 (101)
T 2jne_A 23 GLVPRGSHMELHCPQ--CQH--VLDQDNGHARCRSCGEFI-------EMKALCPDCHQPLQVLKACGAVDYF 83 (101)
T ss_dssp --------CCCBCSS--SCS--BEEEETTEEEETTTCCEE-------EEEEECTTTCSBCEEEEETTEEEEE
T ss_pred ccccCcccccccCcc--CCC--cceecCCEEECccccchh-------hccccCcchhhHHHHHHHhcCcchh
Confidence 4444433 57998 988 355444555699998765 334567888887654 44555553
No 151
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.99 E-value=21 Score=23.72 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=12.2
Q ss_pred cccCCCCceEEEEE
Q psy15072 60 QVRFPPGANFLTFV 73 (97)
Q Consensus 60 q~~~p~~~~~l~~~ 73 (97)
+.++|+.+|+|+|.
T Consensus 64 ~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 64 RFKSQTDQLVLIFA 77 (125)
T ss_dssp HHCSCSSSEEEEET
T ss_pred HHCcCcceEEEEEC
Confidence 37899999999984
No 152
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=25.95 E-value=31 Score=26.26 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=19.6
Q ss_pred cccCCCCcCCc--eEEeceeC-CccccCCceeEEE
Q psy15072 20 RRECTSEQCGA--GVFMAAMS-DRHYCGNKFSSLS 51 (97)
Q Consensus 20 rkeCP~~eCGa--GVFMA~H~-DR~yCGKCg~T~~ 51 (97)
+..||. ||. .-+.-++. .-..|+.||+...
T Consensus 21 ~~~CPE--CGs~~t~IV~D~erGE~VCsdCGLVLE 53 (197)
T 3k1f_M 21 VLTCPE--CKVYPPKIVERFSEGDVVCALCGLVLS 53 (197)
T ss_dssp CCCCTT--TCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred CeECcC--CCCcCCeEEEeCCCCEEEEcCCCCCcC
Confidence 447998 996 22343333 4457999998753
No 153
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=25.86 E-value=18 Score=25.01 Aligned_cols=13 Identities=15% Similarity=-0.143 Sum_probs=11.0
Q ss_pred ccCCC--CceEEEEE
Q psy15072 61 VRFPP--GANFLTFV 73 (97)
Q Consensus 61 ~~~p~--~~~~l~~~ 73 (97)
+++|+ .+|+|||+
T Consensus 56 egiP~~~~qQrLIy~ 70 (126)
T 1se9_A 56 ENGPKTVKEVKLISA 70 (126)
T ss_dssp SSSCCSGGGEEEEET
T ss_pred ccCCCChhhEEEEEC
Confidence 57887 89999996
No 154
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=25.75 E-value=43 Score=17.93 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=16.2
Q ss_pred ccCCCCcCCceEEeceeCCccccCCcee
Q psy15072 21 RECTSEQCGAGVFMAAMSDRHYCGNKFS 48 (97)
Q Consensus 21 keCP~~eCGaGVFMA~H~DR~yCGKCg~ 48 (97)
..||. ||.= +-.-|..|-+|+.
T Consensus 7 W~C~~--C~~~----Nfa~R~~C~~C~~ 28 (33)
T 2k1p_A 7 WQCKT--CSNV----NWARRSECNMCNT 28 (33)
T ss_dssp CBCSS--SCCB----CCTTCSBCSSSCC
T ss_pred cccCC--CCCc----cccccccccccCC
Confidence 67997 9862 3346899999974
No 155
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.23 E-value=22 Score=22.36 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=12.5
Q ss_pred ccccCCCCceEEEEE
Q psy15072 59 SQVRFPPGANFLTFV 73 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~ 73 (97)
++.++|+.+|+|+|.
T Consensus 48 ~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 48 QRFKAHPDQLVLIFA 62 (106)
T ss_dssp HHHTCCTTTEEEEET
T ss_pred HHHCcChhhEEEEEC
Confidence 347899999999984
No 156
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=25.15 E-value=34 Score=23.68 Aligned_cols=29 Identities=31% Similarity=0.680 Sum_probs=21.0
Q ss_pred CCeEEEecccCCCCcCCceEEeceeCCccccCCceeE
Q psy15072 13 NGKIHRLRRECTSEQCGAGVFMAAMSDRHYCGNKFSS 49 (97)
Q Consensus 13 nGKI~rlrkeCP~~eCGaGVFMA~H~DR~yCGKCg~T 49 (97)
+|++. -..|++ ||.= .|..|..|.+|+..
T Consensus 42 ~g~L~--~~rC~~--CG~~----~fPPr~~Cp~C~s~ 70 (145)
T 2gnr_A 42 QNKII--GSKCSK--CGRI----FVPARSYCEHCFVK 70 (145)
T ss_dssp TTCCE--EEECTT--TCCE----EESCCSEETTTTEE
T ss_pred CCEEE--EEEECC--CCcE----EeCCCCCCCCCCCC
Confidence 45444 467998 9983 35669999999875
No 157
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=25.01 E-value=1e+02 Score=17.85 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=16.1
Q ss_pred ecccCCCCcCCc--eEEeceeC---C-----ccccCCceeEE
Q psy15072 19 LRRECTSEQCGA--GVFMAAMS---D-----RHYCGNKFSSL 50 (97)
Q Consensus 19 lrkeCP~~eCGa--GVFMA~H~---D-----R~yCGKCg~T~ 50 (97)
....||+ ||. -+|+-... | -+.|-+||+..
T Consensus 8 ~~~~Cp~--Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 8 DLFTCGK--CKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CCSCCSS--SCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred CccCCCC--CCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence 3457887 875 23433221 1 15677777654
No 158
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=24.87 E-value=15 Score=24.05 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=0.0
Q ss_pred cccccccccCCCCceEEEEE
Q psy15072 54 LKSARSQVRFPPGANFLTFV 73 (97)
Q Consensus 54 ~~~a~~q~~~p~~~~~l~~~ 73 (97)
++...++.++||.+|+|+|.
T Consensus 27 K~~I~~~~gip~~~QrLi~~ 46 (128)
T 3u5e_m 27 KSKIQDKEGIPPDQQRLIFA 46 (128)
T ss_dssp --------------------
T ss_pred HHHHHHHhCcChHHEEEEEC
Confidence 33445558999999999985
No 159
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.16 E-value=22 Score=23.54 Aligned_cols=16 Identities=38% Similarity=0.841 Sum_probs=11.6
Q ss_pred CCceEEeceeC--CccccC
Q psy15072 28 CGAGVFMAAMS--DRHYCG 44 (97)
Q Consensus 28 CGaGVFMA~H~--DR~yCG 44 (97)
|| ++|.+.|- ++|.|.
T Consensus 45 Cg-~~FC~~HRy~e~H~C~ 62 (85)
T 1wff_A 45 CG-NNFCASHRYAEAHGCN 62 (85)
T ss_dssp TC-CEECTTTCSTGGGTCC
T ss_pred CC-CEecccCCCccCCCCc
Confidence 66 67888885 777774
No 160
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.93 E-value=14 Score=23.12 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=11.5
Q ss_pred ccCCCCceEEEEE
Q psy15072 61 VRFPPGANFLTFV 73 (97)
Q Consensus 61 ~~~p~~~~~l~~~ 73 (97)
.++||.+|+|+|.
T Consensus 48 ~~i~~~~QrL~~~ 60 (88)
T 2dzj_A 48 PQWYPARQSLRLD 60 (88)
T ss_dssp SSSCTTTCCEESS
T ss_pred cCCChHHeEEEec
Confidence 6899999999984
No 161
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=23.84 E-value=85 Score=20.85 Aligned_cols=17 Identities=6% Similarity=0.129 Sum_probs=7.5
Q ss_pred EEeceeCCc-cccCCcee
Q psy15072 32 VFMAAMSDR-HYCGNKFS 48 (97)
Q Consensus 32 VFMA~H~DR-~yCGKCg~ 48 (97)
++|--|+++ +.|.-||.
T Consensus 70 ~W~~l~~g~~~RC~eCG~ 87 (98)
T 1v54_F 70 IWFWLHKGEAQRCPSCGT 87 (98)
T ss_dssp EEEEEESSSCEECTTTCC
T ss_pred EEEEEeCCCceECCCCCe
Confidence 344444433 24555554
No 162
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.51 E-value=80 Score=19.88 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=24.8
Q ss_pred EecccCCCCcCCceEEeceeCC-ccccCCceeEEEee
Q psy15072 18 RLRRECTSEQCGAGVFMAAMSD-RHYCGNKFSSLSVE 53 (97)
Q Consensus 18 rlrkeCP~~eCGaGVFMA~H~D-R~yCGKCg~T~~~~ 53 (97)
.++-.||. |+.---.=+|.. --.|..||.++..-
T Consensus 13 Fm~VkCp~--C~~~q~VFSha~t~V~C~~Cgt~L~~P 47 (63)
T 3j20_W 13 FLRVKCID--CGNEQIVFSHPATKVRCLICGATLVEP 47 (63)
T ss_dssp EEEEECSS--SCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred EEEEECCC--CCCeeEEEecCCeEEEccCcCCEEecC
Confidence 35578998 998655557764 55899999887643
No 163
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.41 E-value=26 Score=22.19 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=10.9
Q ss_pred cCCCCc-eEEEEE
Q psy15072 62 RFPPGA-NFLTFV 73 (97)
Q Consensus 62 ~~p~~~-~~l~~~ 73 (97)
++|+.+ |+|+|.
T Consensus 61 gip~~~~qrLi~~ 73 (107)
T 1x1m_A 61 SVPDPELIDLIYC 73 (107)
T ss_dssp TCCCSSSEEEEET
T ss_pred CCChhhcEEEEEC
Confidence 899999 999984
No 164
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}
Probab=23.02 E-value=53 Score=22.10 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=12.4
Q ss_pred eEEEECCCCeEEEec
Q psy15072 6 QVCNVDENGKIHRLR 20 (97)
Q Consensus 6 kyYkVdenGKI~rlr 20 (97)
..+++|+||||...+
T Consensus 109 dvl~~d~dGkI~~~~ 123 (148)
T 3f8x_A 109 DLIEFNDAGKITDLV 123 (148)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEECCCCcEEEEE
Confidence 568898899999865
No 165
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=22.84 E-value=42 Score=20.87 Aligned_cols=8 Identities=13% Similarity=0.040 Sum_probs=4.2
Q ss_pred ccccCCce
Q psy15072 40 RHYCGNKF 47 (97)
Q Consensus 40 R~yCGKCg 47 (97)
...|..||
T Consensus 17 k~~CP~CG 24 (60)
T 2aus_D 17 KETCPVCG 24 (60)
T ss_dssp SSBCTTTC
T ss_pred cccCcCCC
Confidence 33466665
No 166
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=22.28 E-value=27 Score=22.24 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=12.5
Q ss_pred ccccCCCCceEEEEE
Q psy15072 59 SQVRFPPGANFLTFV 73 (97)
Q Consensus 59 ~q~~~p~~~~~l~~~ 73 (97)
++.++|+.+|+|+|.
T Consensus 67 ~~~gip~~~qrLi~~ 81 (111)
T 2ojr_A 67 DKEGIPPDQQRLIFA 81 (111)
T ss_dssp HHHCCCTTTEEEEET
T ss_pred HHHCcCcccEEEEEC
Confidence 347899999999983
No 167
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.13 E-value=8.6 Score=24.10 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=11.9
Q ss_pred ccccCCCCceEEEE
Q psy15072 59 SQVRFPPGANFLTF 72 (97)
Q Consensus 59 ~q~~~p~~~~~l~~ 72 (97)
+..++||.+|+|+|
T Consensus 48 ~~tgip~~~QrL~~ 61 (95)
T 1v86_A 48 SITGLPPAMQKVMY 61 (95)
T ss_dssp HHHCSCSTTCCCBS
T ss_pred HHHCcCHHHeEEEE
Confidence 34889999999996
No 168
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=22.09 E-value=45 Score=21.07 Aligned_cols=29 Identities=17% Similarity=0.441 Sum_probs=19.1
Q ss_pred CCCCcCCceEEeceeCCccccCCceeEEEeecc
Q psy15072 23 CTSEQCGAGVFMAAMSDRHYCGNKFSSLSVELK 55 (97)
Q Consensus 23 CP~~eCGaGVFMA~H~DR~yCGKCg~T~~~~~~ 55 (97)
|| ||.=...-.-...+.|- ||.+.-.++.
T Consensus 7 C~---C~~~~~~~~~~kT~~C~-CG~~~~~~k~ 35 (71)
T 1gh9_A 7 CD---CGRALYSREGAKTRKCV-CGRTVNVKDR 35 (71)
T ss_dssp ET---TSCCEEEETTCSEEEET-TTEEEECCSS
T ss_pred CC---CCCEEEEcCCCcEEECC-CCCeeeeceE
Confidence 76 88833333334577898 9999876655
No 169
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=21.91 E-value=21 Score=22.76 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=13.3
Q ss_pred ccccccCCCCceEEEEE
Q psy15072 57 ARSQVRFPPGANFLTFV 73 (97)
Q Consensus 57 a~~q~~~p~~~~~l~~~ 73 (97)
..++.++||.+|+|+|.
T Consensus 30 i~~~~gip~~~q~L~~~ 46 (152)
T 3b08_A 30 IQDKEGIPPDQQRLIFA 46 (152)
T ss_dssp HHHHHCCCGGGEEEEET
T ss_pred HHHHHCcChHHeEEEEC
Confidence 33447899999999984
No 170
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*
Probab=21.61 E-value=79 Score=23.44 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=20.4
Q ss_pred cCCCCceEEEEEecceeeeeeee---eEEEe
Q psy15072 62 RFPPGANFLTFVLGTASFLVSYP---VLLFD 89 (97)
Q Consensus 62 ~~p~~~~~l~~~~~~~~~~~~~~---~~~~~ 89 (97)
..|++.-.++| ||++++++.++ .+|+|
T Consensus 32 ~~~~~~~~it~-lG~s~~lI~~~~g~~iLiD 61 (360)
T 2wyl_A 32 QVAPGTFAMWW-LGCTGIWLKSEGGTNVCVD 61 (360)
T ss_dssp CCCTTCEEEEE-EETTEEEEECTTCCEEEES
T ss_pred cCCCCcEEEEE-ecccEEEEEeCCCCEEEEe
Confidence 35666555665 59999999886 78999
No 171
>3h0n_A Uncharacterized protein DUF1470; treble CLEF zinc finger, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.45A {Jannaschia SP}
Probab=21.35 E-value=46 Score=23.81 Aligned_cols=24 Identities=25% Similarity=0.738 Sum_probs=17.3
Q ss_pred cccCCCCcCCceEEe--ceeCCccccC
Q psy15072 20 RRECTSEQCGAGVFM--AAMSDRHYCG 44 (97)
Q Consensus 20 rkeCP~~eCGaGVFM--A~H~DR~yCG 44 (97)
-+.|.++.|+ .+|+ ..+..|.+|.
T Consensus 145 lr~C~~~~C~-~~f~D~sr~~~RrwCs 170 (188)
T 3h0n_A 145 FGICNAHRCD-RVYFDTSRNGTRQYCS 170 (188)
T ss_dssp EEECCSTTCC-CEEECCSSSCCCCCSS
T ss_pred cccCCCCCCC-EEEeeCCCCCCCCccC
Confidence 3679999998 5887 3455677775
No 172
>3v2d_8 50S ribosomal protein L35; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_a 2hgj_7 2hgq_7 2hgu_7 1vsa_a 2j03_8 2jl6_8 2jl8_8 2v47_8 2v49_8 2wdi_8 2wdj_8 2wdl_8 2wdn_8 2wh2_8 2wh4_8 2wrj_8 2wrl_8 2wro_8 2wrr_8 ...
Probab=20.63 E-value=43 Score=20.88 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=12.8
Q ss_pred ceEEEECCCCeEEEec
Q psy15072 5 WQVCNVDENGKIHRLR 20 (97)
Q Consensus 5 LkyYkVdenGKI~rlr 20 (97)
-|-|+|..+|||.|.+
T Consensus 11 ~KRFk~TgsGKikr~~ 26 (65)
T 3v2d_8 11 KKRVKITASGKVVAMK 26 (65)
T ss_dssp HTTEEECTTSCEEEEC
T ss_pred hheeEEcCCCCEEecc
Confidence 3679999999998854
No 173
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=20.60 E-value=36 Score=21.11 Aligned_cols=20 Identities=20% Similarity=0.597 Sum_probs=10.6
Q ss_pred ccCCCCcCCceEEeceeCCccccCCcee
Q psy15072 21 RECTSEQCGAGVFMAAMSDRHYCGNKFS 48 (97)
Q Consensus 21 keCP~~eCGaGVFMA~H~DR~yCGKCg~ 48 (97)
+.||+ ||.=.+ ...|..||.
T Consensus 7 r~C~~--CgvYTL------k~~CP~CG~ 26 (60)
T 2apo_B 7 KKCPK--CGLYTL------KEICPKCGE 26 (60)
T ss_dssp EECTT--TCCEES------SSBCSSSCS
T ss_pred eeCCC--CCCEec------cccCcCCCC
Confidence 45776 654221 445666663
No 174
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio}
Probab=20.45 E-value=82 Score=19.34 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=20.8
Q ss_pred CCeEEEecccCCCCc--CCceEEeceeCCccccCCc
Q psy15072 13 NGKIHRLRRECTSEQ--CGAGVFMAAMSDRHYCGNK 46 (97)
Q Consensus 13 nGKI~rlrkeCP~~e--CGaGVFMA~H~DR~yCGKC 46 (97)
||+|+-.++.||.-. |..- .+.+..=|-+|
T Consensus 34 ~G~v~C~~~~CP~l~~~C~~~----~~~~g~CCp~C 65 (67)
T 3bk3_C 34 NQKAECKQEKCAPLAEDCALV----VKQTGACCEKC 65 (67)
T ss_dssp SSBEEEEECCCCCCCTTCCCE----ECCTTCSSCEE
T ss_pred CCceEEccccCCCCccccCCc----ccCCCCcCcCc
Confidence 799999999999866 8762 23444445555
No 175
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=20.37 E-value=63 Score=20.07 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=20.5
Q ss_pred cccCCCCcCCceEEecee--CCccccCCceeEEE
Q psy15072 20 RRECTSEQCGAGVFMAAM--SDRHYCGNKFSSLS 51 (97)
Q Consensus 20 rkeCP~~eCGaGVFMA~H--~DR~yCGKCg~T~~ 51 (97)
+-.||. ||+---+..- .++-.||+|+....
T Consensus 5 ~~~c~~--c~~~n~~p~~~~~~~~~~~~~~~~~~ 36 (148)
T 3p2a_A 5 NTVCTA--CMATNRLPEERIDDGAKCGRCGHSLF 36 (148)
T ss_dssp EEECTT--TCCEEEEESSCSCSCCBCTTTCCBTT
T ss_pred EEECcc--cccccCCCCcccccCCcchhcCCccc
Confidence 456999 9984444333 36778999997653
No 176
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=20.31 E-value=26 Score=22.59 Aligned_cols=12 Identities=17% Similarity=0.169 Sum_probs=9.4
Q ss_pred cCCC-CceEEEEE
Q psy15072 62 RFPP-GANFLTFV 73 (97)
Q Consensus 62 ~~p~-~~~~l~~~ 73 (97)
+.|| ++|+|+|.
T Consensus 61 g~pp~~~QrLIy~ 73 (99)
T 2kdb_A 61 SKPLTKDQRLVYS 73 (99)
T ss_dssp TCCCTTTCCEEET
T ss_pred CCCChhhEEEEEC
Confidence 3565 99999995
No 177
>3r8s_3 50S ribosomal protein L35; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2awb_3 2aw4_3 2i2v_3 2j28_3 2i2t_3* 2qao_3* 2qba_3* 2qbc_3* 2qbe_3 2qbg_3 2qbi_3* 2qbk_3* 2qov_3 2qox_3 2qoz_3* 2qp1_3* 2rdo_3 2vhm_3 2vhn_3 2wwq_7* ...
Probab=20.05 E-value=43 Score=20.76 Aligned_cols=17 Identities=6% Similarity=0.010 Sum_probs=13.2
Q ss_pred cceEEEECCCCeEEEec
Q psy15072 4 EWQVCNVDENGKIHRLR 20 (97)
Q Consensus 4 ~LkyYkVdenGKI~rlr 20 (97)
.-|-|+|..+|||.|.+
T Consensus 9 a~KRFk~TgsGKikr~~ 25 (64)
T 3r8s_3 9 AAKRFKKTGKGGFKHKH 25 (64)
T ss_dssp TTTTCEECSSSCEEEEC
T ss_pred hhheeEEcCCCCEEecc
Confidence 34678999999998754
Done!