RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15072
         (97 letters)



>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome,
           ribosomal, ribosomal R ribosomal protein, eukaryotic
           ribosome, RNA-protein C; 3.00A {Saccharomyces
           cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G*
           2noq_F 1s1h_G 3iz6_F
          Length = 225

 Score = 74.8 bits (184), Expect = 7e-19
 Identities = 1/36 (2%), Positives = 6/36 (16%)

Query: 9   NVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCG 44
            +     I               + +   +  +   
Sbjct: 107 KLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGP 142


>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein,
          zinc, zinc-finger, structural genomics, PSI-2; NMR
          {Thermoplasma acidophilum} SCOP: g.41.8.8
          Length = 55

 Score = 54.8 bits (132), Expect = 4e-12
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 12 ENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCG 44
           +GK+ R  R C   +CG GVF+A  +DR+ CG
Sbjct: 10 ADGKLVRKHRFC--PRCGPGVFLAEHADRYSCG 40


>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
           2xzn_9
          Length = 189

 Score = 56.3 bits (135), Expect = 2e-11
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 5   WQVCNVDENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCG 44
                ++ NGK+   ++ C    CG G+FMA   DRHYCG
Sbjct: 98  LAFYKLENNGKVSLQQKGCPK--CGPGIFMAKHYDRHYCG 135


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 1.3
 Identities = 7/47 (14%), Positives = 12/47 (25%), Gaps = 12/47 (25%)

Query: 28  CGAGVFMA---AMSDRHYCGNKFSSLSVE-LK-----SARSQVRFPP 65
              G+  A   A +D       F     + +        R    +P 
Sbjct: 273 HSQGLVTAVAIAETD---SWESFFVSVRKAITVLFFIGVRCYEAYPN 316



 Score = 26.2 bits (57), Expect = 2.0
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 7/50 (14%)

Query: 41  HYCGNKFSSLSVELKSARSQVRFPPGANFLTFVLGTAS-----FLVSYPV 85
            +     S L      A     F  G N L ++   ++     +L+S P+
Sbjct: 189 KFSAETLSELIRTTLDAEKV--FTQGLNILEWLENPSNTPDKDYLLSIPI 236


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,461,856
Number of extensions: 69645
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 7
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.9 bits)