RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15072
         (97 letters)



>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma
          acidophilum [TaxId: 2303]}
          Length = 55

 Score = 53.6 bits (129), Expect = 5e-12
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 12 ENGKIHRLRRECTSEQCGAGVFMAAMSDRHYCG 44
           +GK+ R  R C   +CG GVF+A  +DR+ CG
Sbjct: 10 ADGKLVRKHRFC--PRCGPGVFLAEHADRYSCG 40


>d1k38a_ e.3.1.1 (A:) Class D beta-lactamase {Salmonella
          typhimurium, OXA-2 [TaxId: 90371]}
          Length = 241

 Score = 23.6 bits (50), Expect = 5.4
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 57 ARSQVRFPPGANFLTFVLGTA 77
           RS+ R+ P + F       A
Sbjct: 38 VRSKKRYSPASTFKIPHTLFA 58


>d1xa1a_ e.3.1.1 (A:) Regulatory protein BlaR1 {Staphylococcus
          aureus [TaxId: 1280]}
          Length = 246

 Score = 22.8 bits (48), Expect = 9.0
 Identities = 3/21 (14%), Positives = 9/21 (42%)

Query: 57 ARSQVRFPPGANFLTFVLGTA 77
            S+ R+ P + +  ++    
Sbjct: 42 KESRKRYSPNSTYKIYLAMFG 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 356,914
Number of extensions: 13253
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 3
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.0 bits)