BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15075
(389 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V7N|V Chain V, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|X Chain X, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|Y Chain Y, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|Z Chain Z, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
Length = 163
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 344 NVVTIKLSESQEIHPLGDPVLVEHHFQMNYNTGEWK 379
+V+ +LS+ E+HPL PVL+ ++++ GEWK
Sbjct: 20 HVLHSRLSQCPEVHPLPTPVLLP---AVDFSLGEWK 52
>pdb|1V7M|V Chain V, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7M|X Chain X, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
Length = 163
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 344 NVVTIKLSESQEIHPLGDPVLVEHHFQMNYNTGEWK 379
+V+ +LS+ E+HPL PVL+ ++++ GEWK
Sbjct: 20 HVLHSRLSQCPEVHPLPTPVLLP---AVDFSLGEWK 52
>pdb|3NL0|A Chain A, Mutant P44s M296i Of Foot-And-Mouth Disease Virus
Rna-Dependent Rna Polymerase
Length = 475
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 357 HPLGDPVLVEHHFQMNYNTGEWKKIKKVKTL 387
H + D ++ HF M+Y TG +K + KTL
Sbjct: 378 HSITDVTFLKRHFHMDYGTGFYKPVMASKTL 408
>pdb|2D7S|A Chain A, Foot And Mouth Disease Virus Rna-Dependent Rna Polymerase
In Complex With Vpg Protein
pdb|2F8E|X Chain X, Foot And Mouth Disease Virus Rna-dependent Rna Polymerase
In Complex With Uridylylated Vpg Protein
Length = 474
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 357 HPLGDPVLVEHHFQMNYNTGEWKKIKKVKTL 387
H + D ++ HF M+Y TG +K + KTL
Sbjct: 378 HSITDVTFLKRHFHMDYGTGFYKPVMASKTL 408
>pdb|4IQX|A Chain A, Mutant P44s P169s M296i Of Foot-and-mouth Disease Virus
Rna-dependent Rna Polymerase
Length = 481
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 357 HPLGDPVLVEHHFQMNYNTGEWKKIKKVKTL 387
H + D ++ HF M+Y TG +K + KTL
Sbjct: 378 HSITDVTFLKRHFHMDYGTGFYKPVMASKTL 408
>pdb|3NMA|A Chain A, Mutant P169s Of Foot-And-Mouth Disease Virus Rna Dependent
Rna- Polymerase
Length = 476
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 357 HPLGDPVLVEHHFQMNYNTGEWKKIKKVKTL 387
H + D ++ HF M+Y TG +K + KTL
Sbjct: 378 HSITDVTFLKRHFHMDYGTGFYKPVMASKTL 408
>pdb|3NKY|A Chain A, Structure Of A Mutant P44s Of Foot-And-Mouth Disease Virus
Rna- Dependent Rna Polymerase
Length = 476
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 357 HPLGDPVLVEHHFQMNYNTGEWKKIKKVKTL 387
H + D ++ HF M+Y TG +K + KTL
Sbjct: 378 HSITDVTFLKRHFHMDYGTGFYKPVMASKTL 408
>pdb|3KLV|A Chain A, M296i G62s Mutant Of Foot-And-Mouth Disease Virus
Rna-Polymerase In Complex With A Template- Primer Rna
Length = 476
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 357 HPLGDPVLVEHHFQMNYNTGEWKKIKKVKTL 387
H + D ++ HF M+Y TG +K + KTL
Sbjct: 378 HSITDVTFLKRHFHMDYGTGFYKPVMASKTL 408
>pdb|3KMQ|A Chain A, G62s Mutant Of Foot-And-Mouth Disease Virus Rna-Polymerase
In Complex With A Template- Primer Rna, Tetragonal
Structure
pdb|3KMS|A Chain A, G62s Mutant Of Foot-And-Mouth Disease Virus Rna-Polymerase
In Complex With A Template- Primer Rna Trigonal
Structure
Length = 476
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 357 HPLGDPVLVEHHFQMNYNTGEWKKIKKVKTL 387
H + D ++ HF M+Y TG +K + KTL
Sbjct: 378 HSITDVTFLKRHFHMDYGTGFYKPVMASKTL 408
>pdb|3KNA|A Chain A, M296i Mutant Of Foot-And-Mouth Disease Virus
Rna-Polymerase In Complex With A Template- Primer Rna
pdb|3KOA|A Chain A, M296i Mutant Of Foot-And-Mouth Disease Virus
Rna-Polymerase In Complex With A Template- Primer Rna
And Gtp
Length = 476
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 357 HPLGDPVLVEHHFQMNYNTGEWKKIKKVKTL 387
H + D ++ HF M+Y TG +K + KTL
Sbjct: 378 HSITDVTFLKRHFHMDYGTGFYKPVMASKTL 408
>pdb|1U09|A Chain A, Footand Mouth Disease Virus Rna-Dependent Rna Polymerase
pdb|1WNE|A Chain A, Foot And Mouth Disease Virus Rna-Dependent Rna Polymerase
In Complex With A Template-Primer Rna
pdb|2E9R|X Chain X, Foot-And-Mouth Disease Virus Rna-Dependent Rna Polymerase
In Complex With A Template-Primer Rna And With Ribavirin
pdb|2E9T|A Chain A, Foot-And-Mouth Disease Virus Rna-Polymerase Rna Dependent
In Complex With A Template-Primer Rna And 5f-Utp
pdb|2E9T|D Chain D, Foot-And-Mouth Disease Virus Rna-Polymerase Rna Dependent
In Complex With A Template-Primer Rna And 5f-Utp
pdb|2E9Z|A Chain A, Foot-And-Mouth Disease Virus Rna-Polymerase In Complex
With A Template- Primer Rna, Atp And Utp
pdb|2EC0|A Chain A, Rna-Dependent Rna Polymerase Of Foot-And-Mouth Disease
Virus In Complex With A Template-Primer Rna And Atp
pdb|2EC0|D Chain D, Rna-Dependent Rna Polymerase Of Foot-And-Mouth Disease
Virus In Complex With A Template-Primer Rna And Atp
Length = 476
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 357 HPLGDPVLVEHHFQMNYNTGEWKKIKKVKTL 387
H + D ++ HF M+Y TG +K + KTL
Sbjct: 378 HSITDVTFLKRHFHMDYGTGFYKPVMASKTL 408
>pdb|3BRS|A Chain A, Crystal Structure Of Sugar Transporter From Clostridium
Phytofermentans
pdb|3BRS|B Chain B, Crystal Structure Of Sugar Transporter From Clostridium
Phytofermentans
Length = 289
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 224 TLKRKPKSAALRAELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTT 272
+KRKP L A +K+ DAA +K A + + S GM + + D T
Sbjct: 61 AIKRKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDS-GMKQDIADIT 108
>pdb|4FZ4|A Chain A, Crystal Structure Of Hp0197-18kd
Length = 154
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 33 KLKLLLSFFHIPRRNMDEWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTE 89
K+K FFH + +++++K +++ E ++ VAEL K YP ++ E
Sbjct: 58 KMKADDKFFHKVKGDLNDFKYQIK---------VENYIRQVAELRKKYPGDNTIEEE 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,802,258
Number of Sequences: 62578
Number of extensions: 395130
Number of successful extensions: 919
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 17
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)