BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15075
(389 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86NP2|NELFA_DROME Negative elongation factor A OS=Drosophila melanogaster GN=Nelf-A
PE=1 SV=2
Length = 1251
Score = 285 bits (730), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 141/219 (64%), Positives = 174/219 (79%), Gaps = 14/219 (6%)
Query: 117 WKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKL 176
WK ELEE++EVA +D+E WVSM+AE MKT+PAT SLNTEI + + + IF D++NDLRKL
Sbjct: 71 WKAELEEVIEVAGLDSELWVSMLAETMKTFPATSSLNTEISDYEDTRPIFIDMVNDLRKL 130
Query: 177 VKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRA 236
V + ++ MLPLECQYLNK+ALISVVGQQ + +KHFTLKRKPKSA LR
Sbjct: 131 VTKH-----------SDLGMLPLECQYLNKNALISVVGQQPAPVKHFTLKRKPKSAQLRT 179
Query: 237 ELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTL-SSSL 295
EL+ KS DA S++KKA+APT+P+RSRGMPRKMTDTTPLKGIPSR+P+ GFRS T+ ++
Sbjct: 180 ELLHKSADAQSSLKKASAPTIPLRSRGMPRKMTDTTPLKGIPSRMPTTGFRSATVPGNAA 239
Query: 296 SRPIMSIPRNPAGRKDGGIKLLDITEQPLGYAQAKKKKK 334
RP +S R PAGRKDGGIKL++ TEQPLGYA AKK+K+
Sbjct: 240 QRPNLS--RTPAGRKDGGIKLIEFTEQPLGYAAAKKRKR 276
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/104 (70%), Positives = 87/104 (83%), Gaps = 3/104 (2%)
Query: 1 NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILE 60
NDSW +GSICSQLN +VL+NIK+CFPDLQTQVKLKLLLSF HIPRR ++EWK ELEE++E
Sbjct: 21 NDSWINGSICSQLNKEVLRNIKECFPDLQTQVKLKLLLSFLHIPRRLVEEWKAELEEVIE 80
Query: 61 VATVDTEQWVSMVAELMKTYPATMSLNTEIGDQD---PYLIEAV 101
VA +D+E WVSM+AE MKT+PAT SLNTEI D + P I+ V
Sbjct: 81 VAGLDSELWVSMLAETMKTFPATSSLNTEISDYEDTRPIFIDMV 124
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 335 QENPCPTYGNVVTIKLSESQEIHPLGDP----VLVEHHFQMNYNTGEWKKIKKVK 385
+ENP P NV+ IKL E++E + LVE H +++YNTGEWK + +
Sbjct: 1189 RENPRPNNENVLVIKLGETEEKVQQDNGHTALCLVESHIRLDYNTGEWKTFQNYR 1243
>sp|Q9H3P2|NELFA_HUMAN Negative elongation factor A OS=Homo sapiens GN=WHSC2 PE=1 SV=3
Length = 528
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 136/222 (61%), Gaps = 22/222 (9%)
Query: 118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
K L EI+++A++D++ WV MVA+++K++P T SLN E+ E N D++ +LR+ V
Sbjct: 72 KGALMEIIQLASLDSDPWVLMVADILKSFPDTGSLNLELEEQNPN---VQDILGELREKV 128
Query: 178 KRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
S MLPLECQYLNK+AL ++ G + +KHF LKRKPKSA LRAE
Sbjct: 129 GE-----------CEASAMLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 177
Query: 238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLSSSLSR 297
L+QKS + A +K++A + RG+ RKM TTPLKGIP + P FRSPT S S
Sbjct: 178 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAP---FRSPTAPSVFSP 234
Query: 298 PIMSIPRNPAG---RKDGGIKLLDITEQPLGYA--QAKKKKK 334
P P+ RK+ G+KLLDI+E + A +AK+++K
Sbjct: 235 TGNRTPIPPSRTLLRKERGVKLLDISELDMVGAGREAKRRRK 276
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 70/102 (68%)
Query: 1 NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILE 60
++ W SI S L V+ NI+ CF L + VKLKLLL H+PRR +DE K L EI++
Sbjct: 21 DELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDEMKGALMEIIQ 80
Query: 61 VATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVG 102
+A++D++ WV MVA+++K++P T SLN E+ +Q+P + + +G
Sbjct: 81 LASLDSDPWVLMVADILKSFPDTGSLNLELEEQNPNVQDILG 122
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 335 QENPCPTYGNVVTIKLSESQEIHPLGD-----PVLVEHHFQMNYNTGEWKKIKKVKTLVS 389
+ENPC G+V+ IKLSE E P D +LV+ F+MNY TG+W + KK K + +
Sbjct: 467 RENPCQEQGDVIQIKLSEHTEDLPKADGQGSTTMLVDTVFEMNYATGQWTRFKKYKPMTN 526
>sp|Q8BG30|NELFA_MOUSE Negative elongation factor A OS=Mus musculus GN=Whsc2 PE=1 SV=1
Length = 530
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 136/222 (61%), Gaps = 21/222 (9%)
Query: 118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
K L +I+++AT+D++ WV MVA+++K++P T SLN ++ E N D++ +LR+ V
Sbjct: 72 KAALMDIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEEQNPN---VQDILGELREKV 128
Query: 178 KRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
S S MLPLECQYLNK+AL ++ G + +KHF LKRKPKSA LRAE
Sbjct: 129 -----------SECEASAMLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 177
Query: 238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLSSSLSR 297
L+QKS + A +K++A + RG+ RKM TTPLKGIP + P FRSPT S S
Sbjct: 178 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAP---FRSPTTPSVFSP 234
Query: 298 PIMSIPRNPAG---RKDGGIKLLDITE-QPLGYAQAKKKKKQ 335
P P+ +K+ G+KLLDI+E +G + K++++
Sbjct: 235 SGNRTPIPPSRTPLQKERGVKLLDISELNTVGAGREAKRRRK 276
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 70/102 (68%)
Query: 1 NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILE 60
++ W SI S L V+ NI+ CF L + VKLKLLL H+PRR +DE K L +I++
Sbjct: 21 DELWAPPSIASLLTAAVIDNIRLCFHRLSSAVKLKLLLGTLHLPRRTVDEMKAALMDIIQ 80
Query: 61 VATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVG 102
+AT+D++ WV MVA+++K++P T SLN ++ +Q+P + + +G
Sbjct: 81 LATLDSDPWVLMVADILKSFPDTGSLNLDLEEQNPNVQDILG 122
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 335 QENPCPTYGNVVTIKLSESQEIHPLGD-----PVLVEHHFQMNYNTGEWKKIKKVKTLVS 389
+ENPCP G+V+ IKLSE E P D +LV+ F+MNY TG+W + KK K + +
Sbjct: 469 RENPCPEQGDVIQIKLSEHTEDLPKADGQGSTTMLVDTVFEMNYATGQWTRFKKYKPMTN 528
>sp|Q6GG85|SYA_STAAR Alanine--tRNA ligase OS=Staphylococcus aureus (strain MRSA252)
GN=alaS PE=3 SV=1
Length = 876
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 18 LKNIKDCFPDLQTQVKLKLLLSFFHIP-----RRNMDEWKVELEEILEVATVDTEQWVSM 72
+ NI+D ++ K+L++ +P R MD++K +L++ + + + + VSM
Sbjct: 760 MGNIEDQVEEING---YKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSM 816
Query: 73 VAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGG 107
VA T P +++ N + GD + VG GGG
Sbjct: 817 VA----TVPKSLTNNVKAGDLIKQMAPIVGGKGGG 847
>sp|A8Z4F6|SYA_STAAT Alanine--tRNA ligase OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=alaS PE=3 SV=1
Length = 877
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 18 LKNIKDCFPDLQTQVKLKLLLSFFHIP-----RRNMDEWKVELEEILEVATVDTEQWVSM 72
+ NI+D ++ K+L++ +P R MD++K +L++ + + + + VSM
Sbjct: 761 MGNIEDQVEEING---YKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSM 817
Query: 73 VAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGG 107
VA T P +++ N + GD + VG GGG
Sbjct: 818 VA----TVPKSLTNNVKAGDLIKQMAPIVGGKGGG 848
>sp|P67011|SYA_STAAN Alanine--tRNA ligase OS=Staphylococcus aureus (strain N315) GN=alaS
PE=1 SV=1
Length = 876
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 18 LKNIKDCFPDLQTQVKLKLLLSFFHIP-----RRNMDEWKVELEEILEVATVDTEQWVSM 72
+ NI+D ++ K+L++ +P R MD++K +L++ + + + + VSM
Sbjct: 760 MGNIEDQVEEING---YKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSM 816
Query: 73 VAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGG 107
VA T P +++ N + GD + VG GGG
Sbjct: 817 VA----TVPKSLTNNVKAGDLIKQMAPIVGGKGGG 847
>sp|P67010|SYA_STAAM Alanine--tRNA ligase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=alaS PE=1 SV=1
Length = 876
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 18 LKNIKDCFPDLQTQVKLKLLLSFFHIP-----RRNMDEWKVELEEILEVATVDTEQWVSM 72
+ NI+D ++ K+L++ +P R MD++K +L++ + + + + VSM
Sbjct: 760 MGNIEDQVEEING---YKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSM 816
Query: 73 VAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGG 107
VA T P +++ N + GD + VG GGG
Sbjct: 817 VA----TVPKSLTNNVKAGDLIKQMAPIVGGKGGG 847
>sp|A6QHF9|SYA_STAAE Alanine--tRNA ligase OS=Staphylococcus aureus (strain Newman)
GN=alaS PE=3 SV=1
Length = 876
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 18 LKNIKDCFPDLQTQVKLKLLLSFFHIP-----RRNMDEWKVELEEILEVATVDTEQWVSM 72
+ NI+D ++ K+L++ +P R MD++K +L++ + + + + VSM
Sbjct: 760 MGNIEDQVEEING---YKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSM 816
Query: 73 VAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGG 107
VA T P +++ N + GD + VG GGG
Sbjct: 817 VA----TVPKSLTNNVKAGDLIKQMAPIVGGKGGG 847
>sp|Q5HFE4|SYA_STAAC Alanine--tRNA ligase OS=Staphylococcus aureus (strain COL) GN=alaS
PE=3 SV=1
Length = 876
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 18 LKNIKDCFPDLQTQVKLKLLLSFFHIP-----RRNMDEWKVELEEILEVATVDTEQWVSM 72
+ NI+D ++ K+L++ +P R MD++K +L++ + + + + VSM
Sbjct: 760 MGNIEDQVEEING---YKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSM 816
Query: 73 VAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGG 107
VA T P +++ N + GD + VG GGG
Sbjct: 817 VA----TVPKSLTNNVKAGDLIKQMAPIVGGKGGG 847
>sp|A5ITE3|SYA_STAA9 Alanine--tRNA ligase OS=Staphylococcus aureus (strain JH9) GN=alaS
PE=3 SV=1
Length = 876
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 18 LKNIKDCFPDLQTQVKLKLLLSFFHIP-----RRNMDEWKVELEEILEVATVDTEQWVSM 72
+ NI+D ++ K+L++ +P R MD++K +L++ + + + + VSM
Sbjct: 760 MGNIEDQVEEING---YKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSM 816
Query: 73 VAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGG 107
VA T P +++ N + GD + VG GGG
Sbjct: 817 VA----TVPKSLTNNVKAGDLIKQMAPIVGGKGGG 847
>sp|Q2FXV9|SYA_STAA8 Alanine--tRNA ligase OS=Staphylococcus aureus (strain NCTC 8325)
GN=alaS PE=3 SV=1
Length = 876
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 18 LKNIKDCFPDLQTQVKLKLLLSFFHIP-----RRNMDEWKVELEEILEVATVDTEQWVSM 72
+ NI+D ++ K+L++ +P R MD++K +L++ + + + + VSM
Sbjct: 760 MGNIEDQVEEING---YKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSM 816
Query: 73 VAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGG 107
VA T P +++ N + GD + VG GGG
Sbjct: 817 VA----TVPKSLTNNVKAGDLIKQMAPIVGGKGGG 847
>sp|Q2FGA8|SYA_STAA3 Alanine--tRNA ligase OS=Staphylococcus aureus (strain USA300)
GN=alaS PE=3 SV=1
Length = 876
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 18 LKNIKDCFPDLQTQVKLKLLLSFFHIP-----RRNMDEWKVELEEILEVATVDTEQWVSM 72
+ NI+D ++ K+L++ +P R MD++K +L++ + + + + VSM
Sbjct: 760 MGNIEDQVEEING---YKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSM 816
Query: 73 VAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGG 107
VA T P +++ N + GD + VG GGG
Sbjct: 817 VA----TVPKSLTNNVKAGDLIKQMAPIVGGKGGG 847
>sp|A6U287|SYA_STAA2 Alanine--tRNA ligase OS=Staphylococcus aureus (strain JH1) GN=alaS
PE=3 SV=1
Length = 876
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 18 LKNIKDCFPDLQTQVKLKLLLSFFHIP-----RRNMDEWKVELEEILEVATVDTEQWVSM 72
+ NI+D ++ K+L++ +P R MD++K +L++ + + + + VSM
Sbjct: 760 MGNIEDQVEEING---YKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSM 816
Query: 73 VAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGG 107
VA T P +++ N + GD + VG GGG
Sbjct: 817 VA----TVPKSLTNNVKAGDLIKQMAPIVGGKGGG 847
>sp|A7X328|SYA_STAA1 Alanine--tRNA ligase OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=alaS PE=3 SV=1
Length = 876
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 18 LKNIKDCFPDLQTQVKLKLLLSFFHIP-----RRNMDEWKVELEEILEVATVDTEQWVSM 72
+ NI+D ++ K+L++ +P R MD++K +L++ + + + + VSM
Sbjct: 760 MGNIEDQVEEING---YKVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSM 816
Query: 73 VAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGG 107
VA T P +++ N + GD + VG GGG
Sbjct: 817 VA----TVPKSLTNNVKAGDLIKQMAPIVGGKGGG 847
>sp|Q8NW87|SYA_STAAW Alanine--tRNA ligase OS=Staphylococcus aureus (strain MW2) GN=alaS
PE=3 SV=1
Length = 876
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 35 KLLLSFFHIP-----RRNMDEWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTE 89
K+L++ +P R MD++K +L++ + + + + VSMVA T P +++ N +
Sbjct: 774 KVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSMVA----TVPKSLTNNVK 829
Query: 90 IGDQDPYLIEAVGFNGGG 107
GD + VG GGG
Sbjct: 830 AGDLIKQMAPIVGGKGGG 847
>sp|Q6G8V1|SYA_STAAS Alanine--tRNA ligase OS=Staphylococcus aureus (strain MSSA476)
GN=alaS PE=3 SV=1
Length = 876
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 35 KLLLSFFHIP-----RRNMDEWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTE 89
K+L++ +P R MD++K +L++ + + + + VSMVA T P +++ N +
Sbjct: 774 KVLVTEVDVPNAKAIRSTMDDFKSKLQDTIIILASNVDDKVSMVA----TVPKSLTNNVK 829
Query: 90 IGDQDPYLIEAVGFNGGG 107
GD + VG GGG
Sbjct: 830 AGDLIKQMAPIVGGKGGG 847
>sp|A8GTZ8|TIG_RICRS Trigger factor OS=Rickettsia rickettsii (strain Sheila Smith)
GN=tig PE=3 SV=1
Length = 445
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 59 LEVATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGGTHEDLSRHHWK 118
LEV + D E+ + +A L K Y T +I D D I+A+G+ T ED + +K
Sbjct: 130 LEVNSKDVEEQLEKLAALTKNY--TKESKAKIKDGDQVTIDAIGYIKEKTFEDGKLNDFK 187
Query: 119 V 119
V
Sbjct: 188 V 188
>sp|B0BVJ0|TIG_RICRO Trigger factor OS=Rickettsia rickettsii (strain Iowa) GN=tig PE=3
SV=1
Length = 445
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 59 LEVATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGGTHEDLSRHHWK 118
LEV + D E+ + +A L K Y T +I D D I+A+G+ T ED + +K
Sbjct: 130 LEVNSKDVEEQLEKLAALTKNY--TKESKAKIKDGDQVTIDAIGYIKEKTFEDGKLNDFK 187
Query: 119 V 119
V
Sbjct: 188 V 188
>sp|Q84TJ0|PMT6_ARATH Probable methyltransferase PMT6 OS=Arabidopsis thaliana
GN=At3g10200 PE=2 SV=1
Length = 591
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 51 WKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIG-DQDPYLIEAVGFNGGGTH 109
WKV L++ ++++ TE+ S +AE + YPAT+ +IG +D Y + V +
Sbjct: 373 WKVPLKDCVQISG-QTEERPSSLAERLSAYPATLR---KIGISEDEYTSDTVFW------ 422
Query: 110 EDLSRHHWKVELEEILEVATV-DTEQWVSMVAELMKTYPA 148
+ H+W++ EV V D ++ A M +YP
Sbjct: 423 REQVNHYWRLMNVNETEVRNVMDMNAFIGGFAAAMNSYPV 462
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,027,035
Number of Sequences: 539616
Number of extensions: 5822396
Number of successful extensions: 13259
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 13214
Number of HSP's gapped (non-prelim): 59
length of query: 389
length of database: 191,569,459
effective HSP length: 119
effective length of query: 270
effective length of database: 127,355,155
effective search space: 34385891850
effective search space used: 34385891850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)