Query psy15075
Match_columns 389
No_of_seqs 58 out of 60
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 19:49:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10597 DNA damage-inducible 80.5 0.64 1.4E-05 38.7 0.5 59 8-70 16-78 (81)
2 PF12717 Cnd1: non-SMC mitotic 63.2 9.3 0.0002 34.2 3.8 63 15-77 24-86 (178)
3 PF06183 DinI: DinI-like famil 60.9 1.9 4.2E-05 34.2 -0.9 59 9-70 5-64 (65)
4 PF06743 FAST_1: FAST kinase-l 41.6 35 0.00076 26.9 3.4 22 128-149 34-57 (71)
5 COG1710 Uncharacterized protei 41.1 51 0.0011 30.2 4.7 94 164-274 7-100 (139)
6 PF14982 UPF0731: UPF0731 fami 35.8 42 0.0009 28.1 3.1 36 289-326 24-62 (79)
7 PTZ00184 calmodulin; Provision 34.7 1.1E+02 0.0025 24.8 5.5 65 9-78 1-78 (149)
8 PF14409 Herpeto_peptide: Ribo 34.2 26 0.00057 28.0 1.6 29 60-88 23-51 (58)
9 PF14559 TPR_19: Tetratricopep 34.0 24 0.00052 25.5 1.3 57 19-76 12-68 (68)
10 PLN00179 acyl- [acyl-carrier p 28.8 2.2E+02 0.0047 30.3 7.5 92 61-177 268-363 (390)
11 PF14075 UBN_AB: Ubinuclein co 28.6 24 0.00052 33.8 0.7 83 165-247 8-101 (214)
12 smart00229 RasGEFN Guanine nuc 25.7 1.1E+02 0.0023 25.5 4.0 67 14-80 42-126 (127)
13 PF06757 Ins_allergen_rp: Inse 24.5 1.2E+02 0.0027 27.5 4.4 82 54-175 61-142 (179)
14 PF12317 IFT46_B_C: Intraflage 21.6 1.8E+02 0.0038 28.6 5.1 63 67-145 119-188 (214)
15 COG1965 CyaY Protein implicate 21.0 45 0.00099 29.4 0.9 24 106-129 67-95 (106)
16 PRK06850 hypothetical protein; 20.8 2.2E+02 0.0047 31.0 6.0 61 164-235 82-152 (507)
No 1
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=80.51 E-value=0.64 Score=38.70 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=46.6
Q ss_pred cccccCCHHHHHHHHhhcCCCchhHHHHHH----hhccCCCcccHHHHHHHHHHHHHHhhcChhHHH
Q psy15075 8 SICSQLNPDVLKNIKDCFPDLQTQVKLKLL----LSFFHIPRRNMDEWKVELEEILEVATVDTEQWV 70 (389)
Q Consensus 8 siaslLnkdvL~~I~~cF~~Lst~VKLKLL----LSFLhL~rrl~eE~K~eLeeILqlA~~DsDeWV 70 (389)
.+-..|..|+.+.|...|+++...|++|.- ++.+..++ +-|+.|++|||-.=.|+|+|.
T Consensus 16 ga~~AL~~EL~kRl~~~fPd~~~~v~Vr~~s~n~lsv~g~~k----~dK~~i~eiLqE~we~AD~Wl 78 (81)
T PRK10597 16 GAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATK----EDKDRISEILQETWESADDWF 78 (81)
T ss_pred hHHHHHHHHHHHHHHhhCCCCCccEEEeecCCCceEecCCCc----chHHHHHHHHHHHHhChhhhh
Confidence 344568899999999999999977888755 33334434 359999999999999999996
No 2
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=63.23 E-value=9.3 Score=34.20 Aligned_cols=63 Identities=22% Similarity=0.214 Sum_probs=53.5
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHhhccCCCcccHHHHHHHHHHHHHHhhcChhHHHHHHHHHh
Q psy15075 15 PDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILEVATVDTEQWVSMVAELM 77 (389)
Q Consensus 15 kdvL~~I~~cF~~Lst~VKLKLLLSFLhL~rrl~eE~K~eLeeILqlA~~DsDeWVrmvAdIL 77 (389)
...+..+..|+.+=++.||...|..+.||-......+++.+.--+..+..|+|+.|+..|...
T Consensus 24 e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~ 86 (178)
T PF12717_consen 24 EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSF 86 (178)
T ss_pred HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHH
Confidence 345778999999999999999999998888888889999995555567799999999999864
No 3
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=60.94 E-value=1.9 Score=34.24 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=38.3
Q ss_pred ccccCCHHHHHHHHhhcCCCchhHHHHHHhhccCCC-cccHHHHHHHHHHHHHHhhcChhHHH
Q psy15075 9 ICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIP-RRNMDEWKVELEEILEVATVDTEQWV 70 (389)
Q Consensus 9 iaslLnkdvL~~I~~cF~~Lst~VKLKLLLSFLhL~-rrl~eE~K~eLeeILqlA~~DsDeWV 70 (389)
+-..|..|+.+.|...|++....|| .. |--.|. ...-.+-|+.|++|||-.=.|+|+|.
T Consensus 5 a~~AL~~EL~kRl~~~yPd~~v~Vr--~~-s~~~l~v~g~~~~~k~~i~~iLqe~we~aD~W~ 64 (65)
T PF06183_consen 5 ALEALESELTKRLHRQYPDAEVRVR--PG-SANGLSVSGGKKDDKERIEEILQEMWEDADDWL 64 (65)
T ss_dssp HHHHHHHHHHHHHHHH-SS-EEEEE--EE-SS-EEEEES--HHHHHHHHHHHHHHHHTHHHH-
T ss_pred HHHHHHHHHHHHHHHHCCCceEeee--ec-ccCccccCCcCchHHHHHHHHHHHHHhccccCc
Confidence 3456788999999999999655444 32 222222 12222229999999999999999995
No 4
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=41.59 E-value=35 Score=26.86 Aligned_cols=22 Identities=18% Similarity=0.456 Sum_probs=18.1
Q ss_pred hccchhhHHHHHHH--hhhccCcc
Q psy15075 128 ATVDTEQWVSMVAE--LMKTYPAT 149 (389)
Q Consensus 128 a~~d~~~wv~~v~~--~~k~~p~t 149 (389)
+......|+.+||+ +++.||..
T Consensus 34 ~~~~p~~ll~~v~Sl~~l~~~p~~ 57 (71)
T PF06743_consen 34 DEFSPEDLLDLVWSLCLLQRFPED 57 (71)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCHH
Confidence 46667999999999 78999863
No 5
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.10 E-value=51 Score=30.15 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccccChhHHHHHhcCCCCccccccccCCccchHHHHHHHHHHH
Q psy15075 164 RIFSDLINDLRKLVKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAELVQKSM 243 (389)
Q Consensus 164 ~~~~d~~~~Lr~~v~~~~~~~~~~~~~~~~~~~lPle~~ylnk~al~~~~g~~~~~~kHFtlKrkpKsa~LRaell~k~~ 243 (389)
++.+..+.||-++|.++.+|+- +-+= -.+-.++.++..++--.|++.+-. -|+|..= .+.+|..
T Consensus 7 ~l~ar~i~ELleki~e~lnE~~---------~eiy-inlr~tr~v~vallens~~vK~Ig----~P~s~y~--k~skkvl 70 (139)
T COG1710 7 ELTARNIRELLEKIDEDLNEDV---------TEIY-INLRPTREVIVALLENSPNVKVIG----CPPSLYP--KVSKKVL 70 (139)
T ss_pred ehhhhhHHHHHHHcchhhcccc---------ceEE-EeecccHHHHHHHHhcCCCcceec----CCchhhh--HHHHHHH
Confidence 5667778889999999887641 1000 023346888888887666654433 2333222 4566666
Q ss_pred HHHHhhhhcCCCccccCCCCCCCCCCCCCCC
Q psy15075 244 DAASNMKKAAAPTVPVRSRGMPRKMTDTTPL 274 (389)
Q Consensus 244 ~~~~~~k~~~~~~~p~~~R~~~Rk~~~~tPl 274 (389)
.|..|+ .-.-.++-.++||.+|+-+..|=|
T Consensus 71 kaleq~-gI~vIPvk~KgrGrprkyd~~t~~ 100 (139)
T COG1710 71 KALEQM-GIKVIPVKLKGRGRPRKYDRNTLL 100 (139)
T ss_pred HHHHhC-CceEeeeeecCCCCCcccchhHHH
Confidence 666675 111223446899999999876543
No 6
>PF14982 UPF0731: UPF0731 family
Probab=35.79 E-value=42 Score=28.08 Aligned_cols=36 Identities=39% Similarity=0.439 Sum_probs=27.3
Q ss_pred CCCCCCCC--CCCCCCCCCCCCCCCCCceeeecCCCCC-Ch
Q psy15075 289 PTLSSSLS--RPIMSIPRNPAGRKDGGIKLLDITEQPL-GY 326 (389)
Q Consensus 289 ~~~~~~~~--r~~~~~~r~~~~rk~gG~klldi~e~p~-g~ 326 (389)
|.+++++. ++-+++.|++ |+--|---|-|++.|. -|
T Consensus 24 ~GLsssaa~~~kE~~p~RqL--rRCpgsHCLTitdvPi~vY 62 (79)
T PF14982_consen 24 PGLSSSAACNGKEHSPTRQL--RRCPGSHCLTITDVPITVY 62 (79)
T ss_pred cccccchhccCcccCccchh--ccCCCcceeEeeccceeee
Confidence 33444433 7778888987 8888999999999999 44
No 7
>PTZ00184 calmodulin; Provisional
Probab=34.66 E-value=1.1e+02 Score=24.77 Aligned_cols=65 Identities=17% Similarity=0.365 Sum_probs=39.5
Q ss_pred ccccCCHHHHHHHHhhcCCCchh-------HHHHHHhhccCCCcccHHHHHHHHHHHHHHhhcCh------hHHHHHHHH
Q psy15075 9 ICSQLNPDVLKNIKDCFPDLQTQ-------VKLKLLLSFFHIPRRNMDEWKVELEEILEVATVDT------EQWVSMVAE 75 (389)
Q Consensus 9 iaslLnkdvL~~I~~cF~~Lst~-------VKLKLLLSFLhL~rrl~eE~K~eLeeILqlA~~Ds------DeWVrmvAd 75 (389)
++.++|.+-++.+...|..+++. .-++.++..+..+.. ...+..++.....+. ++|+.++..
T Consensus 1 ~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~-----~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT-----EAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCC-----HHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 35678999999999999888762 223333333333321 245566666554443 478887776
Q ss_pred Hhh
Q psy15075 76 LMK 78 (389)
Q Consensus 76 ILK 78 (389)
.+.
T Consensus 76 ~~~ 78 (149)
T PTZ00184 76 KMK 78 (149)
T ss_pred hcc
Confidence 543
No 8
>PF14409 Herpeto_peptide: Ribosomally synthesized peptide in Herpetosiphon
Probab=34.19 E-value=26 Score=27.96 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=24.0
Q ss_pred HHhhcChhHHHHHHHHHhhhcCCCccccc
Q psy15075 60 EVATVDTEQWVSMVAELMKTYPATMSLNT 88 (389)
Q Consensus 60 qlA~~DsDeWVrmvAdILKsyPstGsLNl 88 (389)
+-+...++.||..+--++.+||-+||=+-
T Consensus 23 e~eaa~~~~~V~~~~~~~G~~~~tgCdds 51 (58)
T PF14409_consen 23 EEEAAEINDVVGCWKPRDGSYPVTGCDDS 51 (58)
T ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCCcc
Confidence 34556788999999999999999998664
No 9
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=33.99 E-value=24 Score=25.49 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=40.4
Q ss_pred HHHHhhcCCCchhHHHHHHhhccCCCcccHHHHHHHHHHHHHHhhcChhHHHHHHHHH
Q psy15075 19 KNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILEVATVDTEQWVSMVAEL 76 (389)
Q Consensus 19 ~~I~~cF~~Lst~VKLKLLLSFLhL~rrl~eE~K~eLeeILqlA~~DsDeWVrmvAdI 76 (389)
+.+...+..-..-..+++.++..++.....++.+..|..++.....+ ..|-.++|+|
T Consensus 12 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~~~~l~a~i 68 (68)
T PF14559_consen 12 ELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN-PEYQQLLAQI 68 (68)
T ss_dssp HHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH-HHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH-HHHHHHHhcC
Confidence 33333333333367778889999999999999999999888877665 5777777765
No 10
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=28.76 E-value=2.2e+02 Score=30.28 Aligned_cols=92 Identities=16% Similarity=0.273 Sum_probs=60.9
Q ss_pred HhhcChhHHHHHHHHHhhh-cCCCcccccccCCCCchhhhhhccCCCCCccccccchhhHHHHHHHHhhccch-hhHHHH
Q psy15075 61 VATVDTEQWVSMVAELMKT-YPATMSLNTEIGDQDPYLIEAVGFNGGGTHEDLSRHHWKVELEEILEVATVDT-EQWVSM 138 (389)
Q Consensus 61 lA~~DsDeWVrmvAdILKs-yPstGsLNl~~~D~~~~l~~~~~~~~~~~~~~~~~h~~~~~l~eil~~a~~d~-~~wv~~ 138 (389)
+=+.|.|+=|.++|++|+. |-..|.+... |.+.||-+ .+.+.++++++=+ .+|..+
T Consensus 268 ~le~dPd~tm~Aiadmm~~ki~MPa~~m~d-----------------g~d~~lF~-----~fsavaqr~GVYt~~dy~dI 325 (390)
T PLN00179 268 LFEIDPDGAVLAFADMMRKKITMPAHLMYD-----------------GRDDNLFD-----HFSAVAQRLGVYTAKDYADI 325 (390)
T ss_pred HHhhCccHHHHHHHHHHHhcCCCCcccCCC-----------------CCcchHHH-----HHHHHHHHhcCCCHHHHHHH
Confidence 3457999999999999976 8777766661 11223332 4667788888866 999999
Q ss_pred HHHhhhccCccc--ccccccccccccchHHHHHHHHHHHHH
Q psy15075 139 VAELMKTYPATM--SLNTEIGEIVENKRIFSDLINDLRKLV 177 (389)
Q Consensus 139 v~~~~k~~p~t~--~l~~e~~~~~~~~~~~~d~~~~Lr~~v 177 (389)
+..+++.+=-.. -|+.| =+....+++.+..++|++-
T Consensus 326 l~~lv~~W~v~~l~gLs~e---g~kArd~l~~l~~rirr~~ 363 (390)
T PLN00179 326 LEHLVRRWKVEELTGLSGE---GRRAQDYVCGLPPRIRRLE 363 (390)
T ss_pred HHHHHhhcCcCcccCCCHH---HHHHHHHHHHhHHHHHHHH
Confidence 999998774433 23332 3344556666666666643
No 11
>PF14075 UBN_AB: Ubinuclein conserved middle domain
Probab=28.56 E-value=24 Score=33.84 Aligned_cols=83 Identities=27% Similarity=0.346 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC-CCCCCCCCCC--ccccccccChhHHHHHhcCCCC--ccccccccCCccchHHHH---
Q psy15075 165 IFSDLINDLRKLVKRQGSESSS-YSSGSNNSQM--LPLECQYLNKSALISVVGQQSS--VIKHFTLKRKPKSAALRA--- 236 (389)
Q Consensus 165 ~~~d~~~~Lr~~v~~~~~~~~~-~~~~~~~~~~--lPle~~ylnk~al~~~~g~~~~--~~kHFtlKrkpKsa~LRa--- 236 (389)
-+...|++|++.++....+... |-+..=+.-+ +=+-|+.+|.++-..++.+.+. |-.+|||.++.|.-.++.
T Consensus 8 ~l~~~I~~l~~~a~~~~~~gK~kff~~~vn~lLL~ie~~~~~~~~~~R~~vy~hL~~~lPc~K~tL~kr~KkL~~~~~~~ 87 (214)
T PF14075_consen 8 DLEERINDLKEAAKSSDGEGKKKFFTSEVNPLLLDIELQCRELNPSVRSAVYSHLESFLPCNKDTLLKRAKKLRLKEQDD 87 (214)
T ss_pred HHHHHHHHHHHHHHhcCcCcccccCCHHHHHHHHHHHHHHHHcCchhhHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHhh
Confidence 4567889999988855433211 1111111111 1234888998899999998876 889999999988866654
Q ss_pred ---HHHHHHHHHHH
Q psy15075 237 ---ELVQKSMDAAS 247 (389)
Q Consensus 237 ---ell~k~~~~~~ 247 (389)
+.|+|+.++..
T Consensus 88 ~l~e~L~KLk~aI~ 101 (214)
T PF14075_consen 88 RLKEPLQKLKEAID 101 (214)
T ss_pred hHHHHHHHHHHHHH
Confidence 34555554443
No 12
>smart00229 RasGEFN Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif. A subset of guanine nucleotide exchange factor for Ras-like small GTPases appear to possess this domain N-terminal to the RasGef (Cdc25-like) domain. The recent crystal structureof Sos shows that this domain is alpha-helical and plays a "purely structural role" (Nature 394, 337-343).
Probab=25.72 E-value=1.1e+02 Score=25.46 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=45.6
Q ss_pred CHHHHHHHHhhcCCCchh-----------HHHHHHhhccCC----Cccc--HHHHHHHHHHHHHHhhcC-hhHHHHHHHH
Q psy15075 14 NPDVLKNIKDCFPDLQTQ-----------VKLKLLLSFFHI----PRRN--MDEWKVELEEILEVATVD-TEQWVSMVAE 75 (389)
Q Consensus 14 nkdvL~~I~~cF~~Lst~-----------VKLKLLLSFLhL----~rrl--~eE~K~eLeeILqlA~~D-sDeWVrmvAd 75 (389)
+.+++..+..+|....+. +|.+++--+.+- +..- -.++...|.++++.+..+ ...|.+.+++
T Consensus 42 p~~ll~~L~~rf~~~~~~~~~~~~~~~~~~~~rv~~~l~~Wv~~~~~dF~~~~~l~~~l~~f~~~~~~~~~~~~~~~l~~ 121 (127)
T smart00229 42 TQELLQLLLYRYNAIPPESWVERKVNPLRVKNRVLNILRHWVENYWQDFEDDPKLILRLLEFLDLVDQEKGPGLVTSLQE 121 (127)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHCCcccccCHHHHHHHHHHHHHHhhCcCCCHHHHHHH
Confidence 457889999999987664 554433222211 1111 124788899999999888 7899999999
Q ss_pred Hhhhc
Q psy15075 76 LMKTY 80 (389)
Q Consensus 76 ILKsy 80 (389)
+++..
T Consensus 122 ~~~~~ 126 (127)
T smart00229 122 LLQRL 126 (127)
T ss_pred HHHhh
Confidence 88753
No 13
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=24.48 E-value=1.2e+02 Score=27.51 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=51.4
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHhhhcCCCcccccccCCCCchhhhhhccCCCCCccccccchhhHHHHHHHHhhccchh
Q psy15075 54 ELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGGTHEDLSRHHWKVELEEILEVATVDTE 133 (389)
Q Consensus 54 eLeeILqlA~~DsDeWVrmvAdILKsyPstGsLNl~~~D~~~~l~~~~~~~~~~~~~~~~~h~~~~~l~eil~~a~~d~~ 133 (389)
++...++.+..|...|+..++++++-.+- +. +.+.- . ..+.
T Consensus 61 ~l~~yL~~~gldv~~~i~~i~~~l~~~~~----~p-----~~~~~----~--------------------------~~~~ 101 (179)
T PF06757_consen 61 ALLDYLESAGLDVYYYINQINDLLGLPPL----NP-----TPSLS----C--------------------------SRGG 101 (179)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHcCCcC----CC-----Ccccc----c--------------------------ccCC
Confidence 57778889999999999999999843322 11 00000 0 0223
Q ss_pred hHHHHHHHhhhccCcccccccccccccccchHHHHHHHHHHH
Q psy15075 134 QWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRK 175 (389)
Q Consensus 134 ~wv~~v~~~~k~~p~t~~l~~e~~~~~~~~~~~~d~~~~Lr~ 175 (389)
-|..|+.|++..+|-+....+ ..+=-.+++.|.++++.|+.
T Consensus 102 g~~g~~~di~~~lP~~~l~aL-~~~K~~~s~~F~~f~~~l~S 142 (179)
T PF06757_consen 102 GLNGFVDDILALLPRDKLRAL-YEEKLATSPEFAEFVEALRS 142 (179)
T ss_pred CHHHHHHHHHHHCCHHHHHHH-HHHHHHCCHHHHHHHHHHcC
Confidence 366777777777777765554 11233357777777777654
No 14
>PF12317 IFT46_B_C: Intraflagellar transport complex B protein 46 C terminal; InterPro: IPR022088 This entry represents proteins is found in eukaryotes. Proteins are typically between 298 and 416 amino acids in length. It is thought to be a flagellar protein of complex B and like all IFT proteins, it is required for transport of IFT particles into the flagella [].
Probab=21.56 E-value=1.8e+02 Score=28.57 Aligned_cols=63 Identities=19% Similarity=0.444 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhhhcCCCcccccccCCCCchhhhhhccCCCCCccccccchhhHHHHHHHHhhccc-------hhhHHHHH
Q psy15075 67 EQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGGTHEDLSRHHWKVELEEILEVATVD-------TEQWVSMV 139 (389)
Q Consensus 67 DeWVrmvAdILKsyPstGsLNl~~~D~~~~l~~~~~~~~~~~~~~~~~h~~~~~l~eil~~a~~d-------~~~wv~~v 139 (389)
|.|+.-|.++=++-|....--. ..----|-.--+|-.||||+|.-.+.. -++||.+|
T Consensus 119 d~WI~~i~elHr~kp~~tV~Y~----------------~~mPdId~LMqeWP~e~Ee~L~~~~lP~a~lD~~L~~Yv~ii 182 (214)
T PF12317_consen 119 DKWIESIEELHRSKPPPTVHYS----------------KPMPDIDTLMQEWPPEFEELLKKVGLPTAELDCSLEEYVDII 182 (214)
T ss_pred HHHHHHHHHHHhcCCCCceecC----------------CCCCCHHHHHHHCcHHHHHHHhhcCCCccccCCCHHHHHHHH
Confidence 6899999999988875431111 000111122348999999999655433 27999999
Q ss_pred HHhhhc
Q psy15075 140 AELMKT 145 (389)
Q Consensus 140 ~~~~k~ 145 (389)
..++.+
T Consensus 183 C~ilDI 188 (214)
T PF12317_consen 183 CAILDI 188 (214)
T ss_pred HHHhCC
Confidence 999877
No 15
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=21.02 E-value=45 Score=29.38 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=18.7
Q ss_pred CCCccccccchhh-----HHHHHHHHhhc
Q psy15075 106 GGTHEDLSRHHWK-----VELEEILEVAT 129 (389)
Q Consensus 106 ~~~~~~~~~h~~~-----~~l~eil~~a~ 129 (389)
||-|||..+|+|. .+|.+||..|-
T Consensus 67 gG~HF~y~~g~W~~~rsg~~f~~~L~e~~ 95 (106)
T COG1965 67 GGYHFDYKNGEWISTRSGEEFWDLLEEAL 95 (106)
T ss_pred CCceeEeeCCEEEECCCCCcHHHHHHHHH
Confidence 4499999999992 47888887653
No 16
>PRK06850 hypothetical protein; Provisional
Probab=20.79 E-value=2.2e+02 Score=30.99 Aligned_cols=61 Identities=18% Similarity=0.356 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccccCh----hHHHHHhcCC-CCcccccc-----ccCCccchH
Q psy15075 164 RIFSDLINDLRKLVKRQGSESSSYSSGSNNSQMLPLECQYLNK----SALISVVGQQ-SSVIKHFT-----LKRKPKSAA 233 (389)
Q Consensus 164 ~~~~d~~~~Lr~~v~~~~~~~~~~~~~~~~~~~lPle~~ylnk----~al~~~~g~~-~~~~kHFt-----lKrkpKsa~ 233 (389)
|...+.+.++.+.+++.+ ...-+|+..+.+.. +-..++.|.. |+|...|. ||-+|=...
T Consensus 82 Pe~~~~v~~~l~~i~~~a-----------~~~glpi~~~~v~P~~~~sFwv~liGrG~P~Ps~~~RWCT~~LKI~P~~r~ 150 (507)
T PRK06850 82 PVVVDWVNKSLERINEAA-----------KKQGLPITPHKLTPKINDTFWVNLIGKGYPAPRRKFRWCTERLKIDPSNDF 150 (507)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHcCCceEEEeeCCCcchhHHHHHhcCCCCCCCCCCccCCcHHHHhHHHHH
Confidence 344445555555555444 22347887777654 3456677854 34555553 555554444
Q ss_pred HH
Q psy15075 234 LR 235 (389)
Q Consensus 234 LR 235 (389)
+|
T Consensus 151 I~ 152 (507)
T PRK06850 151 IK 152 (507)
T ss_pred HH
Confidence 43
Done!