Your job contains 1 sequence.
>psy15075
NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILE
VATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGGTHEDLSRHHWKVE
LEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLVKRQ
GSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAELVQ
KSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLSSSLSRPIM
SIPRNPAGRKDGGIKLLDITEQPLGYAQAKKKKKQENPCPTYGNVVTIKLSESQEIHPLG
DPVLVEHHFQMNYNTGEWKKIKKVKTLVS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15075
(389 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0038872 - symbol:Nelf-A "Negative elongation facto... 677 2.5e-73 2
ZFIN|ZDB-GENE-030131-6400 - symbol:nelfa "negative elonga... 378 7.7e-48 2
MGI|MGI:1346098 - symbol:Nelfa "negative elongation facto... 369 7.6e-46 2
UNIPROTKB|E2RCC3 - symbol:WHSC2 "Uncharacterized protein"... 374 1.6e-45 2
UNIPROTKB|F1S8S1 - symbol:WHSC2 "Uncharacterized protein"... 374 1.6e-45 2
RGD|1305556 - symbol:Nelfa "negative elongation factor co... 366 1.6e-45 2
UNIPROTKB|Q9H3P2 - symbol:NELFA "Negative elongation fact... 370 4.1e-45 2
UNIPROTKB|H0Y3X6 - symbol:NELFA "Protein NELFA" species:9... 370 4.1e-45 2
UNIPROTKB|F1NCM6 - symbol:WHSC2 "Uncharacterized protein"... 354 3.8e-43 2
UNIPROTKB|B3KSP0 - symbol:NELFA "cDNA FLJ36721 fis, clone... 289 1.3e-36 2
UNIPROTKB|C9JHL4 - symbol:NELFA "Protein NELFA" species:9... 370 4.6e-34 1
UNIPROTKB|C9JEM7 - symbol:NELFA "Protein NELFA" species:9... 370 4.6e-34 1
UNIPROTKB|F1MW50 - symbol:WHSC2 "Uncharacterized protein"... 360 5.2e-33 1
UNIPROTKB|H7C0W2 - symbol:NELFA "Protein NELFA" species:9... 282 6.9e-32 2
UNIPROTKB|H7C2C7 - symbol:NELFA "Protein NELFA" species:9... 289 1.8e-25 1
UNIPROTKB|F8W954 - symbol:NELFA "Protein NELFA" species:9... 127 1.5e-07 1
UNIPROTKB|F8WF98 - symbol:NELFA "Protein NELFA" species:9... 116 2.3e-06 1
UNIPROTKB|H7C2M8 - symbol:NELFA "Protein NELFA" species:9... 116 2.3e-06 1
DICTYBASE|DDB_G0286295 - symbol:DDB_G0286295 "unknown" sp... 126 2.8e-06 2
UNIPROTKB|H7C3C2 - symbol:NELFA "Protein NELFA" species:9... 92 0.00094 1
>FB|FBgn0038872 [details] [associations]
symbol:Nelf-A "Negative elongation factor A" species:7227
"Drosophila melanogaster" [GO:0017053 "transcriptional repressor
complex" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0007070 "negative regulation of transcription from RNA
polymerase II promoter during mitosis" evidence=ISS] [GO:0034244
"negative regulation of transcription elongation from RNA
polymerase II promoter" evidence=IDA] [GO:0032021 "NELF complex"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR026305 EMBL:AE014297 GO:GO:0007275 GO:GO:0017053
GO:GO:0005694 GO:GO:0006351 GO:GO:0003723 GO:GO:0034244
GO:GO:0007070 EMBL:BT004470 RefSeq:NP_650958.2 UniGene:Dm.11211
MINT:MINT-786366 STRING:Q86NP2 PaxDb:Q86NP2
EnsemblMetazoa:FBtr0084051 GeneID:42520 KEGG:dme:Dmel_CG5874
UCSC:CG5874-RA CTD:42520 FlyBase:FBgn0038872 eggNOG:NOG71944
GeneTree:ENSGT00390000005342 InParanoid:Q86NP2 KO:K15179
OMA:DYNTGEW OrthoDB:EOG42FR12 PhylomeDB:Q86NP2 ChiTaRS:WHSC2
GenomeRNAi:42520 NextBio:829235 Bgee:Q86NP2 GermOnline:CG5874
GO:GO:0032021 PANTHER:PTHR13328 Uniprot:Q86NP2
Length = 1251
Score = 677 (243.4 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
Identities = 135/220 (61%), Positives = 166/220 (75%)
Query: 117 WKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKL 176
WK ELEE++EVA +D+E WVSM+AE MKT+PAT SLNTEI + + + IF D++NDLRKL
Sbjct: 71 WKAELEEVIEVAGLDSELWVSMLAETMKTFPATSSLNTEISDYEDTRPIFIDMVNDLRKL 130
Query: 177 VKRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRA 236
V + MLPLECQYLNK+ALISVVGQQ + +KHFTLKRKPKSA LR
Sbjct: 131 VTKHSDLG-----------MLPLECQYLNKNALISVVGQQPAPVKHFTLKRKPKSAQLRT 179
Query: 237 ELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXX 296
EL+ KS DA S++KKA+APT+P+RSRGMPRKMTDTTPLKGIPSR+P+ GF
Sbjct: 180 ELLHKSADAQSSLKKASAPTIPLRSRGMPRKMTDTTPLKGIPSRMPTTGFRSATVPGNAA 239
Query: 297 XXIMSIPRNPAGRKDGGIKLLDITEQPLGYAQAKKKKKQE 336
++ R PAGRKDGGIKL++ TEQPLGYA AKK+K+++
Sbjct: 240 QR-PNLSRTPAGRKDGGIKLIEFTEQPLGYAAAKKRKREQ 278
Score = 383 (139.9 bits), Expect = 1.0e-41, Sum P(2) = 1.0e-41
Identities = 73/104 (70%), Positives = 87/104 (83%)
Query: 1 NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILE 60
NDSW +GSICSQLN +VL+NIK+CFPDLQTQVKLKLLLSF HIPRR ++EWK ELEE++E
Sbjct: 21 NDSWINGSICSQLNKEVLRNIKECFPDLQTQVKLKLLLSFLHIPRRLVEEWKAELEEVIE 80
Query: 61 VATVDTEQWVSMVAELMKTYPATMSLNTEIGDQD---PYLIEAV 101
VA +D+E WVSM+AE MKT+PAT SLNTEI D + P I+ V
Sbjct: 81 VAGLDSELWVSMLAETMKTFPATSSLNTEISDYEDTRPIFIDMV 124
Score = 101 (40.6 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 335 QENPCPTYGNVVTIKLSESQEI--HPLGDPVL--VEHHFQMNYNTGEWKKIKKVK 385
+ENP P NV+ IKL E++E G L VE H +++YNTGEWK + +
Sbjct: 1189 RENPRPNNENVLVIKLGETEEKVQQDNGHTALCLVESHIRLDYNTGEWKTFQNYR 1243
>ZFIN|ZDB-GENE-030131-6400 [details] [associations]
symbol:nelfa "negative elongation factor complex
member A" species:7955 "Danio rerio" [GO:0034244 "negative
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0032021 "NELF complex" evidence=IEA]
InterPro:IPR026305 ZFIN:ZDB-GENE-030131-6400 GO:GO:0034244
GeneTree:ENSGT00390000005342 KO:K15179 GO:GO:0032021
PANTHER:PTHR13328 CTD:7469 EMBL:CR318672 IPI:IPI00899603
RefSeq:NP_001166972.1 UniGene:Dr.17275 Ensembl:ENSDART00000087568
GeneID:559677 KEGG:dre:559677 NextBio:20883079 ArrayExpress:E7FFE0
Bgee:E7FFE0 Uniprot:E7FFE0
Length = 542
Score = 378 (138.1 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
Identities = 92/219 (42%), Positives = 128/219 (58%)
Query: 118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
K L EI+++ATVD+E WV MVA+++K++P T SLN ++ E +N + D++ +LR+ V
Sbjct: 72 KEALSEIIQLATVDSEPWVLMVADILKSFPETGSLNLDLEE--QNPNV-QDILGELREKV 128
Query: 178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
MLPLECQYLNKSAL ++VG + IKHF LKRKPKSA LRAE
Sbjct: 129 NECEAST-----------MLPLECQYLNKSALTTLVGPLTPPIKHFQLKRKPKSATLRAE 177
Query: 238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
L+QKS + A +KK A + RG+ +K+ TTPLKGIP + P
Sbjct: 178 LLQKSTETAQQLKKTAGVPFHSKGRGLVKKIDTTTPLKGIP-KAPFRSPTTPSMFSPPSN 236
Query: 298 XIMSIPRNPAGRKDGGIKLLDITEQPLGYA--QAKKKKK 334
P RK+ G+KLLDI+E + A +AK+++K
Sbjct: 237 RTPIAPARTPLRKERGVKLLDISELDMVGAGREAKRRRK 275
Score = 252 (93.8 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
Identities = 48/102 (47%), Positives = 70/102 (68%)
Query: 1 NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILE 60
++ WT SI S L V+ NI+ CF L VKLKLLL H+PRR +DE K L EI++
Sbjct: 21 DELWTPSSIASLLTVSVIDNIRLCFSSLSPPVKLKLLLGMLHLPRRTVDEMKEALSEIIQ 80
Query: 61 VATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVG 102
+ATVD+E WV MVA+++K++P T SLN ++ +Q+P + + +G
Sbjct: 81 LATVDSEPWVLMVADILKSFPETGSLNLDLEEQNPNVQDILG 122
Score = 139 (54.0 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 335 QENPCPTYGNVVTIKLSESQEIHPLGD-----PVLVEHHFQMNYNTGEWKKIKKVKTLVS 389
+ENPCP G+++ IKLSE E+ P D +LV+ F+MNY+TG+W ++KK K + +
Sbjct: 481 RENPCPEQGDIIQIKLSEHTEVLPKADGTGSTTMLVDTVFEMNYSTGQWTRLKKYKPITN 540
>MGI|MGI:1346098 [details] [associations]
symbol:Nelfa "negative elongation factor complex member A,
Whsc2" species:10090 "Mus musculus" [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0032021 "NELF complex" evidence=ISO] [GO:0034244 "negative
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IMP] InterPro:IPR026305 MGI:MGI:1346098
GO:GO:0006351 GO:GO:0003682 GO:GO:0034244 eggNOG:NOG71944
GeneTree:ENSGT00390000005342 KO:K15179 GO:GO:0032021
PANTHER:PTHR13328 CTD:7469 HOGENOM:HOG000113765 HOVERGEN:HBG052595
OrthoDB:EOG4PC9S3 EMBL:AK012673 EMBL:AK078760 EMBL:AK088384
EMBL:BC018423 EMBL:BC038003 EMBL:AF101435 IPI:IPI00221446
RefSeq:NP_036044.1 UniGene:Mm.332320 ProteinModelPortal:Q8BG30
STRING:Q8BG30 PhosphoSite:Q8BG30 PaxDb:Q8BG30 PRIDE:Q8BG30
Ensembl:ENSMUST00000030993 GeneID:24116 KEGG:mmu:24116
UCSC:uc008xbn.1 InParanoid:Q8BG30 OMA:GDIIQIK NextBio:304151
Bgee:Q8BG30 CleanEx:MM_WHSC2 Genevestigator:Q8BG30
GermOnline:ENSMUSG00000029111 Uniprot:Q8BG30
Length = 530
Score = 369 (135.0 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 86/219 (39%), Positives = 128/219 (58%)
Query: 118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
K L +I+++AT+D++ WV MVA+++K++P T SLN ++ E +N + D++ +LR+ V
Sbjct: 72 KAALMDIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEE--QNPNV-QDILGELREKV 128
Query: 178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
MLPLECQYLNK+AL ++ G + +KHF LKRKPKSA LRAE
Sbjct: 129 SECEASA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 177
Query: 238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
L+QKS + A +K++A + RG+ RKM TTPLKGIP + P
Sbjct: 178 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTTPSVFSPSGN 237
Query: 298 XIMSIPRNPAGRKDGGIKLLDITE-QPLGYA-QAKKKKK 334
P +K+ G+KLLDI+E +G +AK+++K
Sbjct: 238 RTPIPPSRTPLQKERGVKLLDISELNTVGAGREAKRRRK 276
Score = 231 (86.4 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
Identities = 44/102 (43%), Positives = 70/102 (68%)
Query: 1 NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILE 60
++ W SI S L V+ NI+ CF L + VKLKLLL H+PRR +DE K L +I++
Sbjct: 21 DELWAPPSIASLLTAAVIDNIRLCFHRLSSAVKLKLLLGTLHLPRRTVDEMKAALMDIIQ 80
Query: 61 VATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVG 102
+AT+D++ WV MVA+++K++P T SLN ++ +Q+P + + +G
Sbjct: 81 LATLDSDPWVLMVADILKSFPDTGSLNLDLEEQNPNVQDILG 122
Score = 129 (50.5 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 335 QENPCPTYGNVVTIKLSESQEIHPLGD-----PVLVEHHFQMNYNTGEWKKIKKVKTLVS 389
+ENPCP G+V+ IKLSE E P D +LV+ F+MNY TG+W + KK K + +
Sbjct: 469 RENPCPEQGDVIQIKLSEHTEDLPKADGQGSTTMLVDTVFEMNYATGQWTRFKKYKPMTN 528
>UNIPROTKB|E2RCC3 [details] [associations]
symbol:WHSC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0032021 "NELF
complex" evidence=IEA] InterPro:IPR026305 GO:GO:0003682
GO:GO:0034244 GeneTree:ENSGT00390000005342 KO:K15179 GO:GO:0032021
PANTHER:PTHR13328 CTD:7469 OMA:GDIIQIK EMBL:AAEX03002459
RefSeq:XP_545924.2 Ensembl:ENSCAFT00000023690 GeneID:488806
KEGG:cfa:488806 NextBio:20862098 Uniprot:E2RCC3
Length = 532
Score = 374 (136.7 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 88/219 (40%), Positives = 128/219 (58%)
Query: 118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
K L EI+++AT+D++ WV MVA+++K++P T SLN ++ E +N + D++ +LR+ V
Sbjct: 72 KGALAEIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEE--QNPNV-QDILGELREKV 128
Query: 178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
MLPLECQYLNK+AL ++ G + +KHF LKRKPKSA LRAE
Sbjct: 129 NECEASA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 177
Query: 238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
L+QKS + A +K++A + RG+ RKM TTPLKGIP + P
Sbjct: 178 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTTPSVFSPAGN 237
Query: 298 XIMSIPRNPAGRKDGGIKLLDITEQPLGYA--QAKKKKK 334
P RK+ G+KLLDI+E + A +AK+++K
Sbjct: 238 RTPIPPSRTPLRKERGVKLLDISELDMVGAGREAKRRRK 276
Score = 233 (87.1 bits), Expect = 7.9e-26, Sum P(2) = 7.9e-26
Identities = 45/102 (44%), Positives = 70/102 (68%)
Query: 1 NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILE 60
++ W SI S L V+ NI+ CF L + VKLKLLL H+PRR +DE K L EI++
Sbjct: 21 DELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDEMKGALAEIIQ 80
Query: 61 VATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVG 102
+AT+D++ WV MVA+++K++P T SLN ++ +Q+P + + +G
Sbjct: 81 LATLDSDPWVLMVADILKSFPDTGSLNLDLEEQNPNVQDILG 122
Score = 121 (47.7 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 335 QENPCPTYGNVVTIKLSESQEIHPLGD-----PVLVEHHFQMNYNTGEWKKIKKVKTLVS 389
+ENPC G+V+ IKLSE E P D +LV+ F+MNY TG+W + KK K + +
Sbjct: 471 RENPCQEQGDVIQIKLSEHTEDLPKSDGQGSTTMLVDTVFEMNYATGQWTRFKKYKPMAN 530
>UNIPROTKB|F1S8S1 [details] [associations]
symbol:WHSC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0032021 "NELF
complex" evidence=IEA] InterPro:IPR026305 GO:GO:0003682
GO:GO:0034244 GeneTree:ENSGT00390000005342 GO:GO:0032021
PANTHER:PTHR13328 OMA:GDIIQIK EMBL:FP089546 EMBL:FP102229
Ensembl:ENSSSCT00000009498 Uniprot:F1S8S1
Length = 462
Score = 374 (136.7 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 88/219 (40%), Positives = 128/219 (58%)
Query: 118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
K L EI+++AT+D++ WV MVA+++K++P T SLN ++ E +N + D++ +LR+ V
Sbjct: 2 KGALTEIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEE--QNPNV-QDILGELREKV 58
Query: 178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
MLPLECQYLNK+AL ++ G + +KHF LKRKPKSA LRAE
Sbjct: 59 NECEASA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 107
Query: 238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
L+QKS + A +K++A + RG+ RKM TTPLKGIP + P
Sbjct: 108 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTAPSVFSPAGN 167
Query: 298 XIMSIPRNPAGRKDGGIKLLDITEQPLGYA--QAKKKKK 334
P RK+ G+KLLDI+E + A +AK+++K
Sbjct: 168 RTPIPPSRTPLRKERGVKLLDISELDMVGAGREAKRRRK 206
Score = 121 (47.7 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 335 QENPCPTYGNVVTIKLSESQEIHPLGD-----PVLVEHHFQMNYNTGEWKKIKKVKTLVS 389
+ENPC G+V+ IKLSE E P D +LV+ F+MNY TG+W + KK K + +
Sbjct: 401 RENPCQEQGDVIQIKLSEHTEDLPKSDGQGSTTMLVDTVFEMNYATGQWTRFKKYKPMAN 460
Score = 118 (46.6 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 21/51 (41%), Positives = 39/51 (76%)
Query: 52 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVG 102
K L EI+++AT+D++ WV MVA+++K++P T SLN ++ +Q+P + + +G
Sbjct: 2 KGALTEIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEEQNPNVQDILG 52
>RGD|1305556 [details] [associations]
symbol:Nelfa "negative elongation factor complex member A"
species:10116 "Rattus norvegicus" [GO:0003682 "chromatin binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0032021
"NELF complex" evidence=IEA;ISO] [GO:0034244 "negative regulation
of transcription elongation from RNA polymerase II promoter"
evidence=IEA;ISO] InterPro:IPR026305 RGD:1305556 GO:GO:0003682
GO:GO:0034244 EMBL:CH473963 GeneTree:ENSGT00390000005342 KO:K15179
GO:GO:0032021 PANTHER:PTHR13328 CTD:7469 eggNOG:NOG10551
HOGENOM:HOG000113765 HOVERGEN:HBG052595 OrthoDB:EOG4PC9S3
OMA:GDIIQIK EMBL:BC085948 IPI:IPI00364770 RefSeq:NP_001008340.1
UniGene:Rn.9138 STRING:Q5U2N1 Ensembl:ENSRNOT00000021593
GeneID:305455 KEGG:rno:305455 InParanoid:Q5U2N1 NextBio:654600
Genevestigator:Q5U2N1 Uniprot:Q5U2N1
Length = 530
Score = 366 (133.9 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 86/219 (39%), Positives = 128/219 (58%)
Query: 118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
K L +I+++AT+D++ WV MVA+++K++P T SLN ++ E +N + D++ +LR+ V
Sbjct: 72 KGALMDIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEE--QNPNV-QDILGELREKV 128
Query: 178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
MLPLECQYLNK+AL ++ G + +KHF LKRKPKSA LRAE
Sbjct: 129 SECEASA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 177
Query: 238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
L+QKS + A +K++A + RG+ RKM TTPLKGIP + P
Sbjct: 178 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTTPSVFSPSGN 237
Query: 298 XIMSIPRNPAGRKDGGIKLLDITE-QPLGYA-QAKKKKK 334
P +K+ G+KLLDI+E +G +AK+++K
Sbjct: 238 RTPIPPSRTPLQKERGVKLLDISELNTVGAGREAKRRRK 276
Score = 228 (85.3 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 44/102 (43%), Positives = 70/102 (68%)
Query: 1 NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILE 60
++ W SI S L V+ NI+ CF L + VKLKLLL H+PRR +DE K L +I++
Sbjct: 21 DELWAPPSIASLLTAAVIDNIRLCFHRLSSAVKLKLLLGTLHLPRRTVDEMKGALMDIIQ 80
Query: 61 VATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVG 102
+AT+D++ WV MVA+++K++P T SLN ++ +Q+P + + +G
Sbjct: 81 LATLDSDPWVLMVADILKSFPDTGSLNLDLEEQNPNVQDILG 122
Score = 129 (50.5 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 335 QENPCPTYGNVVTIKLSESQEIHPLGD-----PVLVEHHFQMNYNTGEWKKIKKVKTLVS 389
+ENPCP G+V+ IKLSE E P D +LV+ F+MNY TG+W + KK K + +
Sbjct: 469 RENPCPEQGDVIQIKLSEHTEDLPKADGQGSTTMLVDTVFEMNYATGQWTRFKKYKPMTN 528
>UNIPROTKB|Q9H3P2 [details] [associations]
symbol:NELFA "Negative elongation factor A" species:9606
"Homo sapiens" [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0034244 "negative regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=TAS] [GO:0032021
"NELF complex" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR026305 GO:GO:0007275
Reactome:REACT_116125 GO:GO:0016032 EMBL:CH471131 GO:GO:0003682
GO:GO:0006368 GO:GO:0034244 Reactome:REACT_1788 GO:GO:0050434
Reactome:REACT_1892 EMBL:AL132868 Orphanet:280 KO:K15179
GO:GO:0032021 PANTHER:PTHR13328 EMBL:AF101434 EMBL:AB044549
EMBL:AF131751 EMBL:AK126056 EMBL:BC002764 IPI:IPI00643383
IPI:IPI01011851 RefSeq:NP_005654.3 UniGene:Hs.21771
ProteinModelPortal:Q9H3P2 DIP:DIP-48478N IntAct:Q9H3P2
STRING:Q9H3P2 PhosphoSite:Q9H3P2 DMDM:212276499 PaxDb:Q9H3P2
PRIDE:Q9H3P2 DNASU:7469 Ensembl:ENST00000382882
Ensembl:ENST00000411638 GeneID:7469 KEGG:hsa:7469 UCSC:uc003gek.3
CTD:7469 GeneCards:GC04M001984 HGNC:HGNC:12768 HPA:CAB009960
MIM:606026 neXtProt:NX_Q9H3P2 PharmGKB:PA37371 eggNOG:NOG10551
HOGENOM:HOG000113765 HOVERGEN:HBG052595 InParanoid:Q9H3P2
OrthoDB:EOG4PC9S3 PhylomeDB:Q9H3P2 GenomeRNAi:7469 NextBio:29260
ArrayExpress:Q9H3P2 Bgee:Q9H3P2 CleanEx:HS_WHSC2
Genevestigator:Q9H3P2 GermOnline:ENSG00000185049 Uniprot:Q9H3P2
Length = 528
Score = 370 (135.3 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 88/219 (40%), Positives = 128/219 (58%)
Query: 118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
K L EI+++A++D++ WV MVA+++K++P T SLN E+ E +N + D++ +LR+ V
Sbjct: 72 KGALMEIIQLASLDSDPWVLMVADILKSFPDTGSLNLELEE--QNPNV-QDILGELREKV 128
Query: 178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
MLPLECQYLNK+AL ++ G + +KHF LKRKPKSA LRAE
Sbjct: 129 GECEASA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 177
Query: 238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
L+QKS + A +K++A + RG+ RKM TTPLKGIP + P
Sbjct: 178 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTAPSVFSPTGN 237
Query: 298 XIMSIPRNPAGRKDGGIKLLDITEQPLGYA--QAKKKKK 334
P RK+ G+KLLDI+E + A +AK+++K
Sbjct: 238 RTPIPPSRTLLRKERGVKLLDISELDMVGAGREAKRRRK 276
Score = 231 (86.4 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 45/102 (44%), Positives = 70/102 (68%)
Query: 1 NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILE 60
++ W SI S L V+ NI+ CF L + VKLKLLL H+PRR +DE K L EI++
Sbjct: 21 DELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDEMKGALMEIIQ 80
Query: 61 VATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVG 102
+A++D++ WV MVA+++K++P T SLN E+ +Q+P + + +G
Sbjct: 81 LASLDSDPWVLMVADILKSFPDTGSLNLELEEQNPNVQDILG 122
Score = 121 (47.7 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 335 QENPCPTYGNVVTIKLSESQEIHPLGD-----PVLVEHHFQMNYNTGEWKKIKKVKTLVS 389
+ENPC G+V+ IKLSE E P D +LV+ F+MNY TG+W + KK K + +
Sbjct: 467 RENPCQEQGDVIQIKLSEHTEDLPKADGQGSTTMLVDTVFEMNYATGQWTRFKKYKPMTN 526
>UNIPROTKB|H0Y3X6 [details] [associations]
symbol:NELFA "Protein NELFA" species:9606 "Homo sapiens"
[GO:0032021 "NELF complex" evidence=IEA] [GO:0034244 "negative
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR026305 GO:GO:0034244
EMBL:AL132868 GO:GO:0032021 PANTHER:PTHR13328 HGNC:HGNC:12768
ProteinModelPortal:H0Y3X6 Ensembl:ENST00000416258 Bgee:H0Y3X6
Uniprot:H0Y3X6
Length = 532
Score = 370 (135.3 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 88/219 (40%), Positives = 128/219 (58%)
Query: 118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
K L EI+++A++D++ WV MVA+++K++P T SLN E+ E +N + D++ +LR+ V
Sbjct: 76 KGALMEIIQLASLDSDPWVLMVADILKSFPDTGSLNLELEE--QNPNV-QDILGELREKV 132
Query: 178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
MLPLECQYLNK+AL ++ G + +KHF LKRKPKSA LRAE
Sbjct: 133 GECEASA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 181
Query: 238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
L+QKS + A +K++A + RG+ RKM TTPLKGIP + P
Sbjct: 182 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTAPSVFSPTGN 241
Query: 298 XIMSIPRNPAGRKDGGIKLLDITEQPLGYA--QAKKKKK 334
P RK+ G+KLLDI+E + A +AK+++K
Sbjct: 242 RTPIPPSRTLLRKERGVKLLDISELDMVGAGREAKRRRK 280
Score = 121 (47.7 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 335 QENPCPTYGNVVTIKLSESQEIHPLGD-----PVLVEHHFQMNYNTGEWKKIKKVKTLVS 389
+ENPC G+V+ IKLSE E P D +LV+ F+MNY TG+W + KK K + +
Sbjct: 471 RENPCQEQGDVIQIKLSEHTEDLPKADGQGSTTMLVDTVFEMNYATGQWTRFKKYKPMTN 530
Score = 117 (46.2 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 21/53 (39%), Positives = 40/53 (75%)
Query: 50 EWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVG 102
+ K L EI+++A++D++ WV MVA+++K++P T SLN E+ +Q+P + + +G
Sbjct: 74 QMKGALMEIIQLASLDSDPWVLMVADILKSFPDTGSLNLELEEQNPNVQDILG 126
>UNIPROTKB|F1NCM6 [details] [associations]
symbol:WHSC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0032021 "NELF complex" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0034244 "negative regulation
of transcription elongation from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR026305 GO:GO:0003682 GO:GO:0034244
GeneTree:ENSGT00390000005342 GO:GO:0032021 PANTHER:PTHR13328
OMA:GDIIQIK EMBL:AADN02014947 IPI:IPI00591046 PRIDE:F1NCM6
Ensembl:ENSGALT00000025319 Uniprot:F1NCM6
Length = 539
Score = 354 (129.7 bits), Expect = 3.8e-43, Sum P(2) = 3.8e-43
Identities = 84/219 (38%), Positives = 125/219 (57%)
Query: 118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
K L EI+++AT+D++ WV MVA+++K++P T SLN ++ E +N + D++ +LR+ V
Sbjct: 86 KGALTEIVQLATLDSDPWVLMVADILKSFPDTGSLNLDLEE--QNPNV-QDILGELREKV 142
Query: 178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
MLPLECQYLNK+AL ++ G + +KHF LKRKPKSA LRAE
Sbjct: 143 SEGETSA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 191
Query: 238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
L+ KS + A +KK A + RG+ +K+ TTPLKGIP + P
Sbjct: 192 LLLKSTETAQQLKKTAGVPFHAKGRGLVKKIDTTTPLKGIPKQAPFRSTSAPSVFNPSGN 251
Query: 298 XIMSIPRNPAGRKDGGIKLLDITEQPLGYA--QAKKKKK 334
P RK+ G+KLL+ +E + A +AK+++K
Sbjct: 252 RNPIPPSRTPLRKERGVKLLEFSELDMVGAGREAKRRRK 290
Score = 234 (87.4 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 45/102 (44%), Positives = 70/102 (68%)
Query: 1 NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILE 60
++ W SI S L V+ NI+ CF L + VKLKLLL H+PRR +DE K L EI++
Sbjct: 35 DELWAPPSIASLLTASVIDNIRLCFHGLSSAVKLKLLLGMLHLPRRAVDEMKGALTEIVQ 94
Query: 61 VATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVG 102
+AT+D++ WV MVA+++K++P T SLN ++ +Q+P + + +G
Sbjct: 95 LATLDSDPWVLMVADILKSFPDTGSLNLDLEEQNPNVQDILG 136
Score = 123 (48.4 bits), Expect = 3.8e-43, Sum P(2) = 3.8e-43
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 335 QENPCPTYGNVVTIKLSESQEIHPLGD-----PVLVEHHFQMNYNTGEWKKIKKVKTLVS 389
+ENPC G+++ IKLSE E P D +LV+ F+MNY TGEW + KK K + +
Sbjct: 478 RENPCQEQGDIIQIKLSEHTEDLPKADGTGSTTMLVDTVFEMNYATGEWTRFKKYKPITN 537
Score = 37 (18.1 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 244 DAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPS 283
+A ++ P P + +P + TP+ S P+
Sbjct: 365 EALQTNRQTEEPAAPNATTTLPAQFKQRTPMYNSNSNPPA 404
>UNIPROTKB|B3KSP0 [details] [associations]
symbol:NELFA "cDNA FLJ36721 fis, clone UTERU2011287, highly
similar to Negative elongation factor A" species:9606 "Homo
sapiens" [GO:0032021 "NELF complex" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0034244 "negative regulation
of transcription elongation from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR026305 EMBL:CH471131 GO:GO:0003682
GO:GO:0003746 GO:GO:0034244 EMBL:AL132868 GO:GO:0032021
PANTHER:PTHR13328 IPI:IPI01011851 UniGene:Hs.21771 HGNC:HGNC:12768
HOVERGEN:HBG052595 EMBL:AK094040 STRING:B3KSP0
Ensembl:ENST00000542778 Uniprot:B3KSP0
Length = 393
Score = 289 (106.8 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 64/141 (45%), Positives = 85/141 (60%)
Query: 196 MLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAELVQKSMDAASNMKKAAAP 255
MLPLECQYLNK+AL ++ G + +KHF LKRKPKSA LRAEL+QKS + A +K++A
Sbjct: 1 MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAELLQKSTETAQQLKRSAGV 60
Query: 256 TVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXXXIMSIPRNPAGRKDGGIK 315
+ RG+ RKM TTPLKGIP + P P RK+ G+K
Sbjct: 61 PFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTAPSVFSPTGNRTPIPPSRTLLRKERGVK 120
Query: 316 LLDITEQPLGYA--QAKKKKK 334
LLDI+E + A +AK+++K
Sbjct: 121 LLDISELDMVGAGREAKRRRK 141
Score = 121 (47.7 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 335 QENPCPTYGNVVTIKLSESQEIHPLGD-----PVLVEHHFQMNYNTGEWKKIKKVKTLVS 389
+ENPC G+V+ IKLSE E P D +LV+ F+MNY TG+W + KK K + +
Sbjct: 332 RENPCQEQGDVIQIKLSEHTEDLPKADGQGSTTMLVDTVFEMNYATGQWTRFKKYKPMTN 391
>UNIPROTKB|C9JHL4 [details] [associations]
symbol:NELFA "Protein NELFA" species:9606 "Homo sapiens"
[GO:0032021 "NELF complex" evidence=IEA] [GO:0034244 "negative
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR026305 GO:GO:0034244
EMBL:AL132868 GO:GO:0032021 PANTHER:PTHR13328 HGNC:HGNC:12768
HOGENOM:HOG000113765 IPI:IPI00926012 ProteinModelPortal:C9JHL4
STRING:C9JHL4 Ensembl:ENST00000431323 ArrayExpress:C9JHL4
Bgee:C9JHL4 Uniprot:C9JHL4
Length = 294
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 88/219 (40%), Positives = 128/219 (58%)
Query: 118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
K L EI+++A++D++ WV MVA+++K++P T SLN E+ E +N + D++ +LR+ V
Sbjct: 88 KGALMEIIQLASLDSDPWVLMVADILKSFPDTGSLNLELEE--QNPNV-QDILGELREKV 144
Query: 178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
MLPLECQYLNK+AL ++ G + +KHF LKRKPKSA LRAE
Sbjct: 145 GECEASA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 193
Query: 238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
L+QKS + A +K++A + RG+ RKM TTPLKGIP + P
Sbjct: 194 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTAPSVFSPTGN 253
Query: 298 XIMSIPRNPAGRKDGGIKLLDITEQPLGYA--QAKKKKK 334
P RK+ G+KLLDI+E + A +AK+++K
Sbjct: 254 RTPIPPSRTLLRKERGVKLLDISELDMVGAGREAKRRRK 292
Score = 214 (80.4 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 45/107 (42%), Positives = 70/107 (65%)
Query: 1 NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDE-----WKVEL 55
++ W SI S L V+ NI+ CF L + VKLKLLL H+PRR +DE K L
Sbjct: 32 DELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDEHPILQMKGAL 91
Query: 56 EEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVG 102
EI+++A++D++ WV MVA+++K++P T SLN E+ +Q+P + + +G
Sbjct: 92 MEIIQLASLDSDPWVLMVADILKSFPDTGSLNLELEEQNPNVQDILG 138
>UNIPROTKB|C9JEM7 [details] [associations]
symbol:NELFA "Protein NELFA" species:9606 "Homo sapiens"
[GO:0032021 "NELF complex" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0034244 "negative regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR026305 GO:GO:0003682 GO:GO:0034244
EMBL:AL132868 GO:GO:0032021 PANTHER:PTHR13328 HGNC:HGNC:12768
IPI:IPI00970857 ProteinModelPortal:C9JEM7 STRING:C9JEM7
Ensembl:ENST00000455762 ArrayExpress:C9JEM7 Bgee:C9JEM7
Uniprot:C9JEM7
Length = 208
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 88/219 (40%), Positives = 128/219 (58%)
Query: 118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
K L EI+++A++D++ WV MVA+++K++P T SLN E+ E +N + D++ +LR+ V
Sbjct: 2 KGALMEIIQLASLDSDPWVLMVADILKSFPDTGSLNLELEE--QNPNV-QDILGELREKV 58
Query: 178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
MLPLECQYLNK+AL ++ G + +KHF LKRKPKSA LRAE
Sbjct: 59 GECEASA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 107
Query: 238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
L+QKS + A +K++A + RG+ RKM TTPLKGIP + P
Sbjct: 108 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTAPSVFSPTGN 167
Query: 298 XIMSIPRNPAGRKDGGIKLLDITEQPLGYA--QAKKKKK 334
P RK+ G+KLLDI+E + A +AK+++K
Sbjct: 168 RTPIPPSRTLLRKERGVKLLDISELDMVGAGREAKRRRK 206
Score = 116 (45.9 bits), Expect = 0.00012, P = 0.00012
Identities = 21/51 (41%), Positives = 39/51 (76%)
Query: 52 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVG 102
K L EI+++A++D++ WV MVA+++K++P T SLN E+ +Q+P + + +G
Sbjct: 2 KGALMEIIQLASLDSDPWVLMVADILKSFPDTGSLNLELEEQNPNVQDILG 52
>UNIPROTKB|F1MW50 [details] [associations]
symbol:WHSC2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0032021 "NELF
complex" evidence=IEA] InterPro:IPR026305 GO:GO:0003682
GO:GO:0034244 GeneTree:ENSGT00390000005342 GO:GO:0032021
PANTHER:PTHR13328 EMBL:DAAA02018576 IPI:IPI00866879
Ensembl:ENSBTAT00000023832 OMA:TEVVEKX Uniprot:F1MW50
Length = 432
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 83/219 (37%), Positives = 127/219 (57%)
Query: 118 KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLV 177
K L EI+++A++D++ WV MVA+++K++P + +LN ++ E +N + D++ +LR+ V
Sbjct: 72 KGALTEIIQLASLDSDPWVLMVADILKSFPDSGALNLDLEE--QNPNV-QDILGELREKV 128
Query: 178 KRQXXXXXXXXXXXXXXQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAE 237
MLPLECQYLNK+AL ++ G + +KHF LKRKPKSA LRAE
Sbjct: 129 NECEASA-----------MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAE 177
Query: 238 LVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXX 297
L+QKS + A +K++A + RG+ RKM TTPLKGIP + P
Sbjct: 178 LLQKSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTAPSVFSPAGN 237
Query: 298 XIMSIPRNPAGRKDGGIKLLDITE-QPLGYAQAKKKKKQ 335
P RK+ G+KLLDI+E +G + K++++
Sbjct: 238 RTPIPPSRTPLRKERGVKLLDISELDVVGAGREAKRRRR 276
Score = 222 (83.2 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 42/102 (41%), Positives = 70/102 (68%)
Query: 1 NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILE 60
++ W SI S L V+ NI+ CF L + VKLKLLL H+PRR +DE K L EI++
Sbjct: 21 DELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDEMKGALTEIIQ 80
Query: 61 VATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVG 102
+A++D++ WV MVA+++K++P + +LN ++ +Q+P + + +G
Sbjct: 81 LASLDSDPWVLMVADILKSFPDSGALNLDLEEQNPNVQDILG 122
>UNIPROTKB|H7C0W2 [details] [associations]
symbol:NELFA "Protein NELFA" species:9606 "Homo sapiens"
[GO:0032021 "NELF complex" evidence=IEA] [GO:0034244 "negative
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR026305 GO:GO:0034244
EMBL:AL132868 GO:GO:0032021 PANTHER:PTHR13328 HGNC:HGNC:12768
ProteinModelPortal:H7C0W2 Ensembl:ENST00000411649 Uniprot:H7C0W2
Length = 187
Score = 282 (104.3 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 74/190 (38%), Positives = 110/190 (57%)
Query: 77 MKTYPATMSLNTEIGDQDPYLIEAVGFNGGGTHEDLSRHH--W-KVELEEILEVATVDTE 133
+K T+ L D+ P + A+ H L RH W K L EI+++A++D++
Sbjct: 13 LKLLLGTLHLPRRTVDETPAVRSALCPFYSFLHAVL-RHSNKWMKGALMEIIQLASLDSD 71
Query: 134 QWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLVKRQXXXXXXXXXXXXX 193
WV MVA+++K++P T SLN E+ E +N + D++ +LR+ V
Sbjct: 72 PWVLMVADILKSFPDTGSLNLELEE--QNPNV-QDILGELREKVGECEASA--------- 119
Query: 194 XQMLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAELVQKSMDAASNMKKAA 253
MLPLECQYLNK+AL ++ G + +KHF LKRKPKSA LRAEL+QKS + A +K++A
Sbjct: 120 --MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAELLQKSTETAQQLKRSA 177
Query: 254 APTVPVRSRG 263
VP ++G
Sbjct: 178 G--VPFHAKG 185
Score = 138 (53.6 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 26/65 (40%), Positives = 47/65 (72%)
Query: 39 SFFHIPRRNMDEW-KVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGDQDPYL 97
SF H R+ ++W K L EI+++A++D++ WV MVA+++K++P T SLN E+ +Q+P +
Sbjct: 42 SFLHAVLRHSNKWMKGALMEIIQLASLDSDPWVLMVADILKSFPDTGSLNLELEEQNPNV 101
Query: 98 IEAVG 102
+ +G
Sbjct: 102 QDILG 106
Score = 83 (34.3 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 24 CFPDLQTQVKLKLLLSFFHIPRRNMDE 50
CF L + VKLKLLL H+PRR +DE
Sbjct: 3 CFHGLSSAVKLKLLLGTLHLPRRTVDE 29
>UNIPROTKB|H7C2C7 [details] [associations]
symbol:NELFA "Protein NELFA" species:9606 "Homo sapiens"
[GO:0032021 "NELF complex" evidence=IEA] [GO:0034244 "negative
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR026305 GO:GO:0034244
EMBL:AL132868 GO:GO:0032021 PANTHER:PTHR13328 HGNC:HGNC:12768
ProteinModelPortal:H7C2C7 Ensembl:ENST00000453740 Uniprot:H7C2C7
Length = 246
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 64/141 (45%), Positives = 85/141 (60%)
Query: 196 MLPLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAALRAELVQKSMDAASNMKKAAAP 255
MLPLECQYLNK+AL ++ G + +KHF LKRKPKSA LRAEL+QKS + A +K++A
Sbjct: 37 MLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAELLQKSTETAQQLKRSAGV 96
Query: 256 TVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFXXXXXXXXXXXXIMSIPRNPAGRKDGGIK 315
+ RG+ RKM TTPLKGIP + P P RK+ G+K
Sbjct: 97 PFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTAPSVFSPTGNRTPIPPSRTLLRKERGVK 156
Query: 316 LLDITEQPLGYA--QAKKKKK 334
LLDI+E + A +AK+++K
Sbjct: 157 LLDISELDMVGAGREAKRRRK 177
>UNIPROTKB|F8W954 [details] [associations]
symbol:NELFA "Protein NELFA" species:9606 "Homo sapiens"
[GO:0032021 "NELF complex" evidence=IEA] [GO:0034244 "negative
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR026305 GO:GO:0034244
EMBL:AL132868 GO:GO:0032021 PANTHER:PTHR13328 HGNC:HGNC:12768
IPI:IPI00926414 ProteinModelPortal:F8W954 Ensembl:ENST00000333877
ArrayExpress:F8W954 Bgee:F8W954 Uniprot:F8W954
Length = 86
Score = 127 (49.8 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 1 NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEW 51
++ W SI S L V+ NI+ CF L + VKLKLLL H+PRR +DEW
Sbjct: 21 DELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDEW 71
>UNIPROTKB|F8WF98 [details] [associations]
symbol:NELFA "Protein NELFA" species:9606 "Homo sapiens"
[GO:0032021 "NELF complex" evidence=IEA] [GO:0034244 "negative
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR026305 GO:GO:0034244
EMBL:AL132868 GO:GO:0032021 PANTHER:PTHR13328 HGNC:HGNC:12768
IPI:IPI00925762 ProteinModelPortal:F8WF98 Ensembl:ENST00000443203
ArrayExpress:F8WF98 Bgee:F8WF98 Uniprot:F8WF98
Length = 102
Score = 116 (45.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 1 NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDE 50
++ W SI S L V+ NI+ CF L + VKLKLLL H+PRR +DE
Sbjct: 21 DELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDE 70
>UNIPROTKB|H7C2M8 [details] [associations]
symbol:NELFA "Protein NELFA" species:9606 "Homo sapiens"
[GO:0032021 "NELF complex" evidence=IEA] [GO:0034244 "negative
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR026305 GO:GO:0034244
EMBL:AL132868 GO:GO:0032021 PANTHER:PTHR13328 HGNC:HGNC:12768
ProteinModelPortal:H7C2M8 Ensembl:ENST00000458616 Uniprot:H7C2M8
Length = 125
Score = 116 (45.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 1 NDSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDE 50
++ W SI S L V+ NI+ CF L + VKLKLLL H+PRR +DE
Sbjct: 16 DELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDE 65
>DICTYBASE|DDB_G0286295 [details] [associations]
symbol:DDB_G0286295 "unknown" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0286295 EMBL:AAFI02000085 RefSeq:XP_637840.1
ProteinModelPortal:Q54LZ1 EnsemblProtists:DDB0231755 GeneID:8625554
KEGG:ddi:DDB_G0286295 eggNOG:euNOG37687 InParanoid:Q54LZ1
OMA:QQFREQQ Uniprot:Q54LZ1
Length = 969
Score = 126 (49.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 23/90 (25%), Positives = 52/90 (57%)
Query: 2 DSWTSGSICSQLNPDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILEV 61
D+W+S + S LN D+L+ F + T +++K+L SF + ++ E + + +L++
Sbjct: 17 DNWSSERLSSLLNKDILQFFLLKFSKIDTLIRIKVLFSFLFLKKKQFQELEQNISMLLQI 76
Query: 62 ATVDTEQWVSMVAELM-KTYPATMSLNTEI 90
A + ++W+ ++ +L+ K +SLN ++
Sbjct: 77 AEEEEDEWLKVIGQLLNKISDEKISLNVDL 106
Score = 62 (26.9 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 19/37 (51%), Positives = 21/37 (56%)
Query: 198 PLECQYLNKSALISVVGQQSSVIKHFTLKRKPKSAAL 234
PLE YLNK+ LI V + V HF LK KP S L
Sbjct: 130 PLENMYLNKN-LIPVPTESLVVHSHFKLK-KPLSELL 164
>UNIPROTKB|H7C3C2 [details] [associations]
symbol:NELFA "Protein NELFA" species:9606 "Homo sapiens"
[GO:0032021 "NELF complex" evidence=IEA] [GO:0034244 "negative
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR026305 GO:GO:0034244
EMBL:AL132868 GO:GO:0032021 PANTHER:PTHR13328 HGNC:HGNC:12768
ProteinModelPortal:H7C3C2 Ensembl:ENST00000421397 Bgee:H7C3C2
Uniprot:H7C3C2
Length = 65
Score = 92 (37.4 bits), Expect = 0.00094, P = 0.00094
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 18 LKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDE 50
+ NI+ CF L + VKLKLLL H+PRR +DE
Sbjct: 1 IDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDE 33
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 389 363 0.00083 117 3 11 23 0.43 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 617 (66 KB)
Total size of DFA: 243 KB (2130 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.03u 0.11s 31.14t Elapsed: 00:00:04
Total cpu time: 31.03u 0.11s 31.14t Elapsed: 00:00:04
Start: Thu Aug 15 16:50:13 2013 End: Thu Aug 15 16:50:17 2013