RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15075
(389 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 3e-05
Identities = 59/377 (15%), Positives = 102/377 (27%), Gaps = 180/377 (47%)
Query: 68 QWVSMVAELMKTYPATMSLNTEIGDQ-DPYLIEAVGF----------------NGG---- 106
Q M +L KT A ++ ++ D + + GF GG
Sbjct: 1627 QEQGMGMDLYKTSKAAQ----DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 107 GTHEDLSRHHW------KVELEEILEVATVDTEQ--WVSMVAELMKTY---PA--TMSLN 153
E+ S + K++ E+I + + + S L T PA M
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 154 TEIGEIVENKRIFSDLINDLRKLVKRQGS-ESSSYSSG-SNNSQMLPL-ECQYLNKSALI 210
F DL K +G + + +G S L E Y +AL
Sbjct: 1743 -----------AFEDL--------KSKGLIPADATFAGHS-------LGE--Y---AALA 1771
Query: 211 SVVGQQSSVIKHFTLKRKPKSAALRAELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTD 270
S+ V ++ + + V RGM
Sbjct: 1772 SLAD----V---MSI-----ESLVEV----------------------VFYRGM------ 1791
Query: 271 TTPLKGIPSRVPSGGFRSPTLSSSLSRPIMSIPRNPAGRKDGGIKLLDITEQPLGYAQAK 330
T+ ++PR+ GR + G+ ++ ++Q
Sbjct: 1792 -------------------TMQV-------AVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 331 KKKKQENPCPTYGNVVTIKLSESQEIHPLGDPVLVEHHFQMNYNT--------GEWK--- 379
+ E G +V EI V NYN G+ +
Sbjct: 1826 LQYVVERVGKRTGWLV--------EI------V--------NYNVENQQYVAAGDLRALD 1863
Query: 380 ---------KIKKVKTL 387
K++K+ +
Sbjct: 1864 TVTNVLNFIKLQKIDII 1880
Score = 43.5 bits (102), Expect = 1e-04
Identities = 50/325 (15%), Positives = 99/325 (30%), Gaps = 98/325 (30%)
Query: 20 NIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILE-------------VATVDT 66
N D F +L+ + + + E L ++
Sbjct: 165 NTDDYFEELR---------DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 67 EQWVSMVA-----ELMKTYPATMSLNTEIGDQDPYLIEAVGF-----NGGGTHEDLSRHH 116
+W+ + + + + P + L IG +I+ + G T +L R +
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPL---IG-----VIQLAHYVVTAKLLGFTPGEL-RSY 266
Query: 117 WK---VELEEILE---VATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLI 170
K + ++ +A D+ W S + K +++ IG V +
Sbjct: 267 LKGATGHSQGLVTAVAIAETDS--WESFFVSVRK----AITVLFFIG--VRCYEAYP--- 315
Query: 171 NDLRKLVKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVG-QQSSVIKHFTL--KR 227
S N++ +P S ++S+ Q V +
Sbjct: 316 --------NTSLPPSILEDSLENNEGVP--------SPMLSISNLTQEQVQDYVNKTNSH 359
Query: 228 KPKSAALRAELV-----------QKSMDA-ASNMKKAAAPTVPVRSRGMP---RKMTDTT 272
P + LV +S+ ++KA AP+ +SR +P RK+ +
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR-IPFSERKLKFSN 418
Query: 273 PLKGIPSRVPSGGFRSPTLSSSLSR 297
+ +P P F S L +
Sbjct: 419 --RFLPVASP---FHSHLLVPASDL 438
Score = 33.5 bits (76), Expect = 0.13
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 31/96 (32%)
Query: 70 VSMVAELMKTYPATM--SLNTE--------IGDQDPYLIEAVGFN--G-----GGTHEDL 112
M+A P + S + E +G + +L+E V +N G L
Sbjct: 1807 YGMIAIN----PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL 1862
Query: 113 SRHHWKVELEEILE---VATVDTEQ-WVSMVAELMK 144
+ +L + +D + S+ E ++
Sbjct: 1863 D------TVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.002
Identities = 36/242 (14%), Positives = 69/242 (28%), Gaps = 80/242 (33%)
Query: 8 SICSQLNPDVLKNI--KDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILEVATVD 65
+ L+ +I L LLL + + E+
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR---PQDLPREVLTTNPRR--- 329
Query: 66 TEQWVSMVAELMKTYPAT-----------------MSLNTEIGDQDPYLIEAVGFNGGGT 108
+S++AE ++ AT SLN +P + F
Sbjct: 330 ----LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN----VLEPAEYRKM-F----- 375
Query: 109 HEDLS--RHHWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRIF 166
+ LS + +L + W ++ ++ +V
Sbjct: 376 -DRLSVFPPSAHIP-TILLSLI------WFDVIKS-------------DVMVVVN----- 409
Query: 167 SDLINDLRKLVKRQGSESSSYSSGSNNSQMLPLECQYLNKSALISVVGQQSSVIKHFTLK 226
L LV++Q ES+ S L L+ + N+ AL S++ H+ +
Sbjct: 410 -KLHK--YSLVEKQPKESTISI----PSIYLELKVKLENEYAL------HRSIVDHYNIP 456
Query: 227 RK 228
+
Sbjct: 457 KT 458
Score = 34.8 bits (79), Expect = 0.055
Identities = 25/206 (12%), Positives = 66/206 (32%), Gaps = 48/206 (23%)
Query: 12 QLNPDVLKNI-KDC--FPDLQTQVKLKLLLSFFHIPRRNMDEWKVE--LEEILEVATVDT 66
L P + + FP + LL + ++ + V + ++ + + V+
Sbjct: 365 VLEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWF----DVIKSDVMVVVNKLHKYSLVE- 418
Query: 67 EQWVSMVAELMKTYPATMSLNTEIGDQDPYL----IEAVGFNGGGTHEDLSR-------- 114
+Q + Y + L ++ + + L ++ +DL
Sbjct: 419 KQPKESTISIPSIY---LELKVKL-ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 115 ----HHWK----VELEEILEVATVDTEQWVSMVAELMKT---YPATMSLNTEIGE----- 158
HH K E + + +D ++ ++ + A+ S+ + +
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFR-FLE--QKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 159 --IVENKRIFSDLINDLRKLVKRQGS 182
I +N + L+N + + +
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEE 557
>3eps_A Isocitrate dehydrogenase kinase/phosphatase; ATP-binding,
glyoxylate bypass, nucleotide-binding, protein
phosphatase; HET: AMP ATP; 2.80A {Escherichia coli O157}
PDB: 3lcb_A* 3lc6_A*
Length = 578
Score = 30.6 bits (69), Expect = 0.96
Identities = 11/99 (11%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 115 HHWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIVENKRI---FSDLIN 171
H + E + ++ ++ ++ L K + + + ++ + + + +
Sbjct: 112 DHRSLTPERLFIFSSQPERRFRTIPRPLAKDFHPDHGWESLLMRVISDLPLRLHWQNKSR 171
Query: 172 DLRKLVKRQGSESSSYSSGSNNSQMLPLECQYLNKSALI 210
D+ +++ + ++ Q+ E Y NK+A +
Sbjct: 172 DIHYIIRHLTETLGPENLSKSHLQVAN-ELFYRNKAAWL 209
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 29.7 bits (67), Expect = 2.0
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 4 WTSGSICSQLN--PDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILEV 61
W G +++ ++L++ + F D TQV+L LL + + + E + ++++L +
Sbjct: 450 WIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSL 509
Query: 62 ATVDTE 67
AT D++
Sbjct: 510 ATQDSD 515
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP
pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB:
2xwm_A*
Length = 223
Score = 27.1 bits (61), Expect = 8.2
Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 15/59 (25%)
Query: 234 LRAELVQKSMDAASNMKKAAAPTVPVRSRGMPRKMTDTTPLKGIPSRVPSGGFRSPTLS 292
L+ + + A A P + DT +K V + G T
Sbjct: 106 TPPALIARVVAALKEGHSAVVPGLAP---------ADT--IK----AVDANGAVLGTPE 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.371
Gapped
Lambda K H
0.267 0.0609 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,838,591
Number of extensions: 340705
Number of successful extensions: 548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 11
Length of query: 389
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 294
Effective length of database: 4,049,298
Effective search space: 1190493612
Effective search space used: 1190493612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.4 bits)