RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15075
         (389 letters)



>d1a0tp_ f.4.3.2 (P:) Sucrose-specific porin {Enterobacterium
           (Salmonella typhimurium) [TaxId: 90371]}
          Length = 413

 Score = 29.6 bits (66), Expect = 0.61
 Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 4/57 (7%)

Query: 65  DTEQWVSMVAELMKTYPATMSLNTEIGDQDPYLIEAVGFNGGGTHEDLSRHHWKVEL 121
           D+ QW +    L++      +L  E      Y    +   G    + ++   +K+  
Sbjct: 300 DSYQWATFNLRLIQAINQNFALAYEGS----YQYMDLKPEGYNDRQAVNGSFYKLTF 352


>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 29.7 bits (66), Expect = 0.71
 Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 4   WTSGSICSQLN--PDVLKNIKDCFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILE 60
           W  G    +++   ++L++  + F D  TQV+L LL +   +  +   E +  ++++L 
Sbjct: 447 WIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLS 505


>d1we1a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Synechocystis sp.
           [TaxId: 1143]}
          Length = 222

 Score = 28.1 bits (62), Expect = 1.4
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 31/167 (18%)

Query: 24  CFPDLQTQVKLKLLLSFFHIPRRNMDEWKVELEEILEVATVDTEQWVSMVAELMKTYPAT 83
            FP+L  +  L+  L F++        W+ +  +I        ++   + A   +   A 
Sbjct: 69  YFPELNRKQSLEQDLQFYY-----GSNWR-QEVKISAAGQAYVDRVRQVAATAPELLVA- 121

Query: 84  MSLNTEIGDQ------DPYLIEAVGFNGGGT-----HEDLSRHHWKVELEEILEVATVDT 132
            S    +GD             A+  + GGT      +      +K    + +    +D 
Sbjct: 122 HSYTRYLGDLSGGQILKKIAQNAMNLHDGGTAFYEFADIDDEKAFKNTYRQAMNDLPIDQ 181

Query: 133 EQWVSMVAELMKTYPATMSLNTEIGEIVENKRIFSDLINDLRKLVKR 179
                +V E    +    ++N +         +F++L  +L K +  
Sbjct: 182 ATAERIVDEANDAF----AMNMK---------MFNELEGNLIKAIGI 215


>d1n45a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 214

 Score = 28.1 bits (62), Expect = 1.5
 Identities = 6/52 (11%), Positives = 16/52 (30%)

Query: 109 HEDLSRHHWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGEIV 160
               S   +K      +    +       ++ E    +   + L  E+ E++
Sbjct: 161 PNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELL 212



 Score = 25.8 bits (56), Expect = 8.3
 Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 38  LSFFHIPR-RNMDEWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLNTEIGD 92
           L+FF  P   +  ++K      +    +       ++ E    +   + L  E+ +
Sbjct: 155 LAFFTFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQE 210


>d1wzda1 a.132.1.1 (A:7-213) Heme oxygenase HmuO {Corynebacterium
           diphtheriae [TaxId: 1717]}
          Length = 207

 Score = 27.4 bits (60), Expect = 2.5
 Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 5/65 (7%)

Query: 99  EAVGFNGGGT-----HEDLSRHHWKVELEEILEVATVDTEQWVSMVAELMKTYPATMSLN 153
              G +                 +K E  E L    +  EQ   ++ E    +     + 
Sbjct: 143 RHYGVDPEALGFYHFEGIAKLKVYKDEYREKLNNLELSDEQREHLLKEATDAFVFNHQVF 202

Query: 154 TEIGE 158
            ++G+
Sbjct: 203 ADLGK 207


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.371 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,412,726
Number of extensions: 63216
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 7
Length of query: 389
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 302
Effective length of database: 1,213,086
Effective search space: 366351972
Effective search space used: 366351972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.1 bits)