BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15078
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XHM|B Chain B, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
Length = 77
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 6 TNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKEKT 65
++ Q +++ EQL+ EAN+ RI VS+A D++ Y H ED LL + + NPF+EK
Sbjct: 13 ASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASE-NPFREKK 71
Query: 66 -SCMIL 70
C IL
Sbjct: 72 FFCAIL 77
>pdb|3AH8|G Chain G, Structure Of Heterotrimeric G Protein Galpha-Q Beta
Gamma In Complex With An Inhibitor Ym-254890
Length = 78
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 6 TNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKEK 64
++ Q +++ EQL+ EAN+ RI VS+A D++ Y H ED LL + + NPF+EK
Sbjct: 14 ASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASE-NPFREK 71
>pdb|1GG2|G Chain G, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|G Chain G, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With
Gdp Bound
pdb|2BCJ|G Chain G, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 71
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 6 TNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKEK 64
++ Q +++ EQL+ EAN+ RI VS+A D++ Y H ED LL + + NPF+EK
Sbjct: 7 ASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASE-NPFREK 64
>pdb|3V5W|G Chain G, Human G Protein-Coupled Receptor Kinase 2 In Complex
With Soluble Gbetagamma Subunits And Paroxetine
Length = 77
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 6 TNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKEK 64
++ Q +++ EQL+ EAN+ RI VS+A D++ Y H ED LL + + NPF+EK
Sbjct: 13 ASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASE-NPFREK 70
>pdb|3SN6|G Chain G, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 68
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 6 TNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKEK 64
++ Q +++ EQL+ EAN+ RI VS+A D++ Y H ED LL + + NPF+EK
Sbjct: 7 ASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASE-NPFREK 64
>pdb|1OMW|G Chain G, Crystal Structure Of The Complex Between G
Protein-Coupled Receptor Kinase 2 And Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunits
pdb|3CIK|G Chain G, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|G Chain G, Human Grk2 In Complex With Gbetgamma Subunits And
Balanol (Soak)
pdb|3KRX|G Chain G, Human Grk2 In Complex With Gbetgamma Subunits And
Balanol (Co-Crystal)
pdb|3PSC|G Chain G, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|G Chain G, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|G Chain G, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|G Chain G, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
Length = 74
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 6 TNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKEK 64
++ Q +++ EQL+ EAN+ RI VS+A D++ Y H ED LL + + NPF+EK
Sbjct: 13 ASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASE-NPFREK 70
>pdb|1BAK|A Chain A, Signal Transduction Pleckstrin Homology Domain Of
G-Protein Coupled Receptor Kinase 2 (Beta-Adrenergic
Receptor Kinase 1), C-Terminal Extended, Nmr, 20
Structures
Length = 119
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 41 NEHQHEDCLLVGFSSQKSNPF 61
H +DC++ G+ S+ NPF
Sbjct: 1 GSHMGKDCIMHGYMSKMGNPF 21
>pdb|3OP5|A Chain A, Human Vaccinia-Related Kinase 1
pdb|3OP5|B Chain B, Human Vaccinia-Related Kinase 1
pdb|3OP5|C Chain C, Human Vaccinia-Related Kinase 1
pdb|3OP5|D Chain D, Human Vaccinia-Related Kinase 1
Length = 364
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 6/31 (19%)
Query: 21 EANLKR------INVSQAIQDIIKYINEHQH 45
EAN KR + +S I DI++YI+EH++
Sbjct: 143 EANAKRFSRKTVLQLSLRILDILEYIHEHEY 173
>pdb|2LAV|A Chain A, Nmr Solution Structure Of Human Vaccinia-Related Kinase 1
Length = 361
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 6/31 (19%)
Query: 21 EANLKR------INVSQAIQDIIKYINEHQH 45
EAN KR + +S I DI++YI+EH++
Sbjct: 143 EANAKRFSRKTVLQLSLRILDILEYIHEHEY 173
>pdb|2KTY|A Chain A, Solution Structure Of Human Vaccinia Related Kinase-1
pdb|2KUL|A Chain A, Solution Structure Of Human Vaccinia Related Kinase
1(Vrk1)
Length = 368
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 6/31 (19%)
Query: 21 EANLKR------INVSQAIQDIIKYINEHQH 45
EAN KR + +S I DI++YI+EH++
Sbjct: 143 EANAKRFSRKTVLQLSLRILDILEYIHEHEY 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.130 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,570,330
Number of Sequences: 62578
Number of extensions: 41121
Number of successful extensions: 147
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 10
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)