Query psy15078
Match_columns 70
No_of_seqs 108 out of 258
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 19:58:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00224 GGL G protein gamma 100.0 3.6E-29 7.8E-34 146.2 6.4 61 9-70 2-63 (63)
2 KOG4119|consensus 99.9 1.1E-26 2.3E-31 139.1 6.4 68 2-70 2-71 (71)
3 cd00068 GGL G protein gamma su 99.9 1.6E-26 3.5E-31 132.7 6.3 56 9-65 2-57 (57)
4 PF00631 G-gamma: GGL domain; 99.9 3.4E-23 7.3E-28 121.7 3.3 63 6-70 2-68 (68)
5 PF15290 Syntaphilin: Golgi-lo 66.6 7.2 0.00016 29.1 3.0 35 7-41 118-152 (305)
6 COG0721 GatC Asp-tRNAAsn/Glu-t 61.5 23 0.00049 21.8 4.2 45 18-64 15-65 (96)
7 KOG0722|consensus 60.7 4.9 0.00011 30.0 1.3 52 16-68 92-143 (329)
8 PF07989 Microtub_assoc: Micro 58.4 13 0.00028 22.0 2.6 31 5-36 43-73 (75)
9 PF05069 Phage_tail_S: Phage v 56.4 39 0.00084 21.6 4.8 51 7-63 2-52 (148)
10 PF06637 PV-1: PV-1 protein (P 55.7 26 0.00057 27.3 4.5 19 6-24 363-381 (442)
11 PF09032 Siah-Interact_N: Siah 55.0 16 0.00036 22.0 2.7 25 4-28 1-28 (79)
12 KOG0286|consensus 52.5 12 0.00025 28.4 2.1 24 6-29 2-25 (343)
13 PF12709 Kinetocho_Slk19: Cent 50.9 9.6 0.00021 23.6 1.2 23 5-27 55-77 (87)
14 PRK10803 tol-pal system protei 50.4 32 0.00069 24.5 4.0 39 4-42 59-97 (263)
15 PF06009 Laminin_II: Laminin D 50.2 5.2 0.00011 25.8 -0.0 26 4-31 88-113 (138)
16 TIGR03755 conj_TIGR03755 integ 49.6 13 0.00028 28.9 2.0 39 5-43 356-394 (418)
17 PF12277 DUF3618: Protein of u 48.4 21 0.00046 19.2 2.3 40 4-43 1-46 (49)
18 PF11853 DUF3373: Protein of u 47.7 14 0.00031 29.2 2.0 20 4-24 30-49 (489)
19 PRK11546 zraP zinc resistance 44.3 34 0.00074 22.8 3.2 29 7-35 90-118 (143)
20 PF02344 Myc-LZ: Myc leucine z 43.4 28 0.0006 17.9 2.0 19 6-24 8-26 (32)
21 PF02201 SWIB: SWIB/MDM2 domai 43.0 56 0.0012 18.9 3.7 34 15-48 8-41 (76)
22 CHL00163 ycf65 putative riboso 42.2 43 0.00093 21.2 3.2 31 16-46 43-80 (99)
23 PF12325 TMF_TATA_bd: TATA ele 39.4 74 0.0016 20.4 4.1 40 4-43 21-60 (120)
24 COG1654 BirA Biotin operon rep 39.1 45 0.00097 20.0 2.8 40 16-55 23-65 (79)
25 cd04766 HTH_HspR Helix-Turn-He 38.8 37 0.0008 20.0 2.5 20 5-24 71-90 (91)
26 PF02831 gpW: gpW; InterPro: 38.8 47 0.001 19.5 2.8 21 5-25 37-57 (68)
27 PRK02724 hypothetical protein; 38.6 54 0.0012 21.0 3.3 34 16-49 48-88 (104)
28 PHA02570 dexA exonuclease; Pro 38.3 57 0.0012 23.3 3.7 40 5-44 62-103 (220)
29 COG5509 Uncharacterized small 38.0 70 0.0015 18.8 3.4 21 6-26 32-52 (65)
30 PF11663 Toxin_YhaV: Toxin wit 37.7 90 0.002 20.9 4.4 47 4-50 8-56 (140)
31 PF10850 DUF2653: Protein of u 37.0 29 0.00063 21.7 1.8 24 31-54 58-81 (91)
32 PF05377 FlaC_arch: Flagella a 35.7 86 0.0019 17.8 3.9 35 4-42 12-46 (55)
33 PF03861 ANTAR: ANTAR domain; 35.5 46 0.001 18.0 2.4 23 15-37 34-56 (56)
34 smart00512 Skp1 Found in Skp1 35.4 44 0.00096 20.0 2.5 18 30-47 51-68 (104)
35 smart00502 BBC B-Box C-termina 35.0 97 0.0021 18.2 4.2 39 6-44 21-59 (127)
36 PF09590 Env-gp36: Lentivirus 34.2 46 0.001 27.0 3.0 28 33-65 13-42 (591)
37 cd04395 RhoGAP_ARHGAP21 RhoGAP 33.4 1.1E+02 0.0024 20.4 4.4 37 13-51 47-93 (196)
38 TIGR00219 mreC rod shape-deter 32.9 73 0.0016 23.0 3.6 18 7-24 67-84 (283)
39 KOG2808|consensus 32.1 44 0.00095 25.4 2.4 20 29-48 311-330 (341)
40 PF08694 UFC1: Ubiquitin-fold 32.1 47 0.001 22.7 2.4 16 33-48 33-48 (161)
41 PF12808 Mto2_bdg: Micro-tubul 31.8 47 0.001 18.6 2.0 22 6-27 29-50 (52)
42 PF05939 Phage_min_tail: Phage 31.4 40 0.00087 20.9 1.9 25 31-55 53-77 (109)
43 PF15058 Speriolin_N: Sperioli 30.8 43 0.00092 23.7 2.1 39 9-52 22-60 (200)
44 PF14473 RD3: RD3 protein 30.4 41 0.00089 22.3 1.8 39 15-53 75-113 (133)
45 KOG1724|consensus 30.0 54 0.0012 22.1 2.4 22 29-50 52-73 (162)
46 PF01978 TrmB: Sugar-specific 29.9 97 0.0021 16.9 3.1 24 15-38 25-48 (68)
47 PRK09109 motC flagellar motor 29.1 94 0.002 22.0 3.6 45 4-48 49-93 (246)
48 COG5012 Predicted cobalamin bi 28.9 36 0.00078 24.5 1.4 27 4-30 165-191 (227)
49 COG0207 ThyA Thymidylate synth 28.8 20 0.00044 26.3 0.2 24 7-30 112-135 (268)
50 PF14071 YlbD_coat: Putative c 28.7 1.3E+02 0.0027 19.8 3.9 34 27-62 87-120 (124)
51 PF06305 DUF1049: Protein of u 28.3 72 0.0016 17.4 2.4 19 7-25 49-67 (68)
52 PF00790 VHS: VHS domain; Int 28.3 1.1E+02 0.0025 19.3 3.6 43 2-44 31-73 (140)
53 PF08727 P3A: Poliovirus 3A pr 28.2 55 0.0012 18.8 1.9 15 30-44 26-40 (57)
54 PF07544 Med9: RNA polymerase 28.2 59 0.0013 19.3 2.1 23 4-26 50-72 (83)
55 PF02183 HALZ: Homeobox associ 27.9 54 0.0012 17.6 1.8 19 6-24 19-37 (45)
56 PF10874 DUF2746: Protein of u 27.9 55 0.0012 18.7 1.8 21 7-27 27-47 (57)
57 cd04399 RhoGAP_fRGD2 RhoGAP_fR 27.5 1.5E+02 0.0032 20.3 4.3 37 13-51 51-98 (212)
58 PF14197 Cep57_CLD_2: Centroso 27.5 62 0.0014 18.8 2.1 21 6-26 47-67 (69)
59 PF14916 CCDC92: Coiled-coil d 27.4 69 0.0015 18.4 2.2 13 9-21 6-18 (60)
60 PF11068 YlqD: YlqD protein; 27.1 1.6E+02 0.0035 19.1 4.2 39 4-42 25-67 (131)
61 PF06309 Torsin: Torsin; Inte 26.4 1.8E+02 0.004 18.9 4.4 46 15-60 20-68 (127)
62 PF06698 DUF1192: Protein of u 26.3 1.3E+02 0.0027 17.2 3.2 20 7-26 29-48 (59)
63 smart00151 SWIB SWI complex, B 26.2 1.4E+02 0.003 17.2 3.8 32 17-48 10-41 (77)
64 PF14538 Raptor_N: Raptor N-te 26.0 60 0.0013 21.5 2.1 21 7-27 73-93 (154)
65 cd04403 RhoGAP_ARHGAP27_15_12_ 25.7 1.8E+02 0.0038 19.3 4.3 37 13-51 45-90 (187)
66 PF11629 Mst1_SARAH: C termina 25.6 76 0.0016 17.7 2.1 25 10-34 23-47 (49)
67 PF00286 Flexi_CP: Viral coat 25.6 2.1E+02 0.0045 19.0 5.1 43 6-49 5-47 (140)
68 PHA00728 hypothetical protein 25.4 75 0.0016 21.2 2.4 17 6-22 5-21 (151)
69 cd02978 KaiB_like KaiB-like fa 24.7 83 0.0018 18.6 2.3 35 27-62 13-47 (72)
70 smart00576 BTP Bromodomain tra 24.6 1.5E+02 0.0032 17.0 3.9 33 10-43 7-39 (77)
71 PF12651 RHH_3: Ribbon-helix-h 24.5 1.2E+02 0.0026 15.9 3.7 31 13-43 12-43 (44)
72 KOG0604|consensus 24.4 57 0.0012 25.2 1.9 34 28-64 293-327 (400)
73 cd05505 Bromo_WSTF_like Bromod 24.4 95 0.0021 18.8 2.6 25 31-55 3-27 (97)
74 TIGR02209 ftsL_broad cell divi 24.4 1.2E+02 0.0026 17.3 2.9 44 7-52 32-75 (85)
75 PF05615 THOC7: Tho complex su 24.3 66 0.0014 20.4 2.0 21 6-26 88-108 (139)
76 PF04508 Pox_A_type_inc: Viral 24.3 96 0.0021 14.7 2.2 16 8-23 3-18 (23)
77 PF04839 PSRP-3_Ycf65: Plastid 24.2 80 0.0017 17.6 2.0 28 16-43 14-48 (49)
78 PF08897 DUF1841: Domain of un 24.2 44 0.00095 22.2 1.1 16 36-51 30-45 (137)
79 PF15467 SGIII: Secretogranin- 24.0 77 0.0017 24.7 2.5 43 7-55 393-439 (453)
80 PF03931 Skp1_POZ: Skp1 family 23.9 84 0.0018 17.2 2.1 15 30-44 47-61 (62)
81 KOG3357|consensus 23.6 1.1E+02 0.0024 20.7 2.9 17 32-48 35-51 (167)
82 PF02672 CP12: CP12 domain; I 23.5 31 0.00066 20.3 0.2 35 10-45 28-62 (71)
83 PRK11677 hypothetical protein; 23.5 1.2E+02 0.0027 19.8 3.2 22 10-31 33-54 (134)
84 PF04977 DivIC: Septum formati 23.4 85 0.0018 17.4 2.1 15 37-51 54-68 (80)
85 KOG2182|consensus 23.3 60 0.0013 26.0 1.9 36 24-65 143-178 (514)
86 PF10078 DUF2316: Uncharacteri 23.2 1.6E+02 0.0036 18.1 3.5 33 4-36 1-33 (89)
87 cd00197 VHS_ENTH_ANTH VHS, ENT 23.0 1.3E+02 0.0029 18.0 3.1 37 9-45 33-69 (115)
88 smart00288 VHS Domain present 22.8 1.4E+02 0.003 18.9 3.2 42 3-44 27-68 (133)
89 PF09336 Vps4_C: Vps4 C termin 22.8 43 0.00093 18.9 0.8 22 20-41 35-56 (62)
90 PF04728 LPP: Lipoprotein leuc 22.4 95 0.0021 17.7 2.1 28 3-30 7-34 (56)
91 KOG4302|consensus 22.3 2E+02 0.0043 23.8 4.7 41 6-46 103-143 (660)
92 PF04420 CHD5: CHD5-like prote 21.9 1.8E+02 0.0038 19.2 3.7 31 7-37 74-104 (161)
93 COG3355 Predicted transcriptio 21.3 1.4E+02 0.0029 19.6 3.0 35 14-48 44-78 (126)
94 PLN03060 inositol phosphatase- 21.2 50 0.0011 23.3 1.0 27 2-28 179-205 (206)
95 COG1792 MreC Cell shape-determ 21.2 75 0.0016 23.0 1.9 56 8-63 68-132 (284)
96 PHA03162 hypothetical protein; 21.1 70 0.0015 21.3 1.6 19 4-22 18-36 (135)
97 PF05812 Herpes_BLRF2: Herpesv 21.1 68 0.0015 20.9 1.5 21 4-24 8-28 (118)
98 COG3937 Uncharacterized conser 21.1 85 0.0018 20.2 2.0 18 5-22 89-106 (108)
99 PF09388 SpoOE-like: Spo0E lik 21.0 1.1E+02 0.0024 15.9 2.2 11 12-22 3-13 (45)
100 cd03568 VHS_STAM VHS domain fa 20.7 1.6E+02 0.0035 19.1 3.3 43 3-45 27-69 (144)
101 COG4367 Uncharacterized protei 20.6 2.1E+02 0.0045 18.0 3.6 33 4-36 1-33 (97)
102 PF10112 Halogen_Hydrol: 5-bro 20.6 94 0.002 20.8 2.2 39 6-44 75-121 (199)
103 PF08870 DUF1832: Domain of un 20.6 85 0.0019 19.8 1.9 23 26-48 1-23 (113)
104 KOG2856|consensus 20.6 91 0.002 24.5 2.3 39 6-44 177-215 (472)
105 cd04375 RhoGAP_DLC1 RhoGAP_DLC 20.5 1.3E+02 0.0027 20.8 2.9 23 27-51 70-92 (220)
106 TIGR01010 BexC_CtrB_KpsE polys 20.2 2.5E+02 0.0053 20.4 4.5 38 11-48 168-205 (362)
107 PRK13246 dihydrobiliverdin:fer 20.2 2.3E+02 0.0049 20.4 4.2 25 25-49 182-206 (236)
108 PF10243 MIP-T3: Microtubule-b 20.1 35 0.00075 26.6 0.0 37 1-37 458-501 (539)
No 1
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=99.96 E-value=3.6e-29 Score=146.22 Aligned_cols=61 Identities=48% Similarity=0.728 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCcccccCCCCCCCCCCC-CCceecC
Q psy15078 9 QQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKE-KTSCMIL 70 (70)
Q Consensus 9 ~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~~-k~~C~il 70 (70)
++++++|++||.+|+++|||||+||++|++||+++..+||||+|+++++ |||++ +++|.+|
T Consensus 2 ~~~~~~ve~Lr~el~~~RikvS~a~~~li~y~e~~~~~DP~l~g~~~~~-NP~~~dk~~c~~l 63 (63)
T smart00224 2 DQLRKEVEQLRKELSRERIKVSKAAEELLAYCEQHAEEDPLLTGPPPSK-NPFIEDKTSCWIL 63 (63)
T ss_pred hHHHHHHHHHHHHHCCceehHHHHHHHHHHHHHcCCCCCCCcCCCCCCC-CCCCCCCCCcCcC
Confidence 6899999999999999999999999999999999999999999999864 99999 8899986
No 2
>KOG4119|consensus
Probab=99.94 E-value=1.1e-26 Score=139.14 Aligned_cols=68 Identities=41% Similarity=0.652 Sum_probs=61.5
Q ss_pred ccchhh-HHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCcccccCCCCCCCCCCCC-CceecC
Q psy15078 2 DMMITN-LQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKEK-TSCMIL 70 (70)
Q Consensus 2 ~~~~~~-~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~~k-~~C~il 70 (70)
++...+ +.++|++|+|||.|++++|++||+|+++|++||++|+++|||+.|++.+ .|||+++ ++|+||
T Consensus 2 ~~~~~~~~~q~k~~VeqLk~e~~~~R~~vS~a~~el~~y~E~~~~~DpLl~gv~~~-~NPf~e~K~~Csil 71 (71)
T KOG4119|consen 2 SVESNSKKPQMKKEVEQLKLEANIERIKVSKAAAELLEYCETHATEDPLLEGVPEK-ENPFREKKSVCSIL 71 (71)
T ss_pred CcccccchHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhcCccCccccCCccc-cCCCcccCCCcccC
Confidence 444444 7899999999999999999999999999999999999999999999986 6999995 569986
No 3
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=99.93 E-value=1.6e-26 Score=132.74 Aligned_cols=56 Identities=41% Similarity=0.600 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCcccccCCCCCCCCCCCCC
Q psy15078 9 QQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKEKT 65 (70)
Q Consensus 9 ~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~~k~ 65 (70)
++++++|++||.+|+++|||||+||++|++||++|+.+||||.|++.. +|||++++
T Consensus 2 ~~~~~~veqLr~el~~~RikvS~a~~~l~~y~e~~~~~Dpll~g~~~~-~NP~~~~~ 57 (57)
T cd00068 2 DQLKKEVEQLRKELSRERLKVSKAAAELLKYCEQNAENDPLLTGPPSP-SNPWIEKK 57 (57)
T ss_pred HHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCCCCCCCCCCCCC-CCCCCCCc
Confidence 689999999999999999999999999999999999999999998854 69999974
No 4
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=99.87 E-value=3.4e-23 Score=121.70 Aligned_cols=63 Identities=43% Similarity=0.588 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCcccccC---CCCCCCCCCCC-CceecC
Q psy15078 6 TNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGF---SSQKSNPFKEK-TSCMIL 70 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dpll~g~---~~~~~NP~~~k-~~C~il 70 (70)
...++++++|++||.+|+++|++||+||++|++||+ +.+||||.|+ +.++.|||+++ +.|.||
T Consensus 2 ~~~~~l~~ei~~L~~el~~~r~~vS~a~~~li~y~~--~~~DPll~~~~~p~~~~~NPw~~~~~~C~il 68 (68)
T PF00631_consen 2 QEKDQLKREIEQLRQELERERIKVSKACKELIEYCE--STPDPLLPGPWGPPSSSSNPWIEKDGCCWIL 68 (68)
T ss_dssp THHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHH--GTC-HHHHT--SS--GGGSTTCC-STHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccceeHHHHHHHHHHHhc--CCCCceeCCCCCCCCccCCCCcCCCCCeeeC
Confidence 457889999999999999999999999999999999 7789999766 44567999999 568764
No 5
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=66.62 E-value=7.2 Score=29.09 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH
Q psy15078 7 NLQQQKQITEQLRREANLKRINVSQAIQDIIKYIN 41 (70)
Q Consensus 7 ~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~ 41 (70)
.+..+|++|.|||+.+..=|-.....=..|.+|.-
T Consensus 118 ALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFv 152 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFV 152 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHh
Confidence 46678999999999998888777777667777753
No 6
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=61.54 E-value=23 Score=21.85 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=29.0
Q ss_pred HHHHHcccchh-HHHHHHHHHHHHHhhCcCC-----cccccCCCCCCCCCCCC
Q psy15078 18 LRREANLKRIN-VSQAIQDIIKYINEHQHED-----CLLVGFSSQKSNPFKEK 64 (70)
Q Consensus 18 Lr~el~~~Rik-vS~a~~~li~yc~~~~~~D-----pll~g~~~~~~NP~~~k 64 (70)
-|.+++-+.+. +..-+++|+.|.++-..-| |..+.... +|++++.
T Consensus 15 arL~lseee~e~~~~~l~~Il~~veql~evD~~~vep~~~~~~~--~~~lReD 65 (96)
T COG0721 15 ARLELSEEELEKFATQLEDILGYVEQLNEVDTEGVEPTTHPLEV--SNVLRED 65 (96)
T ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccc--cccccCC
Confidence 34444444443 5666778999999988777 55554443 4788774
No 7
>KOG0722|consensus
Probab=60.71 E-value=4.9 Score=29.95 Aligned_cols=52 Identities=10% Similarity=-0.022 Sum_probs=45.0
Q ss_pred HHHHHHHcccchhHHHHHHHHHHHHHhhCcCCcccccCCCCCCCCCCCCCcee
Q psy15078 16 EQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKEKTSCM 68 (70)
Q Consensus 16 e~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~~k~~C~ 68 (70)
.++-..++-+-.++++++..+..+|.....-|-++.|.+. ..|||+..++|.
T Consensus 92 t~ydyaldhpd~~fynyyqyyr~r~apkvd~raviVGvl~-i~s~Fqyls~~a 143 (329)
T KOG0722|consen 92 TQYDYALDHPDEVFYNYYQYYRARYAPKVDPRAVIVGVLV-ILSAFQYLSNVA 143 (329)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHHhccccCCcEEEEeehh-hhhHHHHHHHHH
Confidence 4566677888889999999999999999988888999887 479999988875
No 8
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=58.39 E-value=13 Score=22.04 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q psy15078 5 ITNLQQQKQITEQLRREANLKRINVSQAIQDI 36 (70)
Q Consensus 5 ~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~l 36 (70)
..+++ ++-+++.|+.++...+-.+-+|..++
T Consensus 43 keNie-LKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 43 KENIE-LKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444 77888888888887777776666543
No 9
>PF05069 Phage_tail_S: Phage virion morphogenesis family ; InterPro: IPR006522 This entry represents a number of known and suspected phage virion morphogenesis proteins. The S protein from phage P2 is thought to act in tail completion and stable head joining [].
Probab=56.37 E-value=39 Score=21.59 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCcccccCCCCCCCCCCC
Q psy15078 7 NLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKE 63 (70)
Q Consensus 7 ~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~~ 63 (70)
+++++++.++.|.....-.+--.-.+++.|.+...++ |=.+-.|++ +||.+
T Consensus 2 ~~~~l~~~L~~L~~~~~~~~~l~~~ig~~l~~~~~~~-----f~~q~~pdG-~~W~p 52 (148)
T PF05069_consen 2 DLEQLQRALERLAAQPKDRRPLLRKIGEYLRKSTRRR-----FRNQRDPDG-SPWAP 52 (148)
T ss_pred cHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHHH-----HHccCCCCC-CCCCc
Confidence 4677778888887775444444556667777777766 333333334 77854
No 10
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=55.73 E-value=26 Score=27.31 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHcc
Q psy15078 6 TNLQQQKQITEQLRREANL 24 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~~ 24 (70)
-.++.-+++++||+.++.+
T Consensus 363 keLeekkreleql~~q~~v 381 (442)
T PF06637_consen 363 KELEEKKRELEQLKMQLAV 381 (442)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456667777777777654
No 11
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=54.96 E-value=16 Score=22.04 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=17.5
Q ss_pred chhhHHHHHHHHHHHH---HHHcccchh
Q psy15078 4 MITNLQQQKQITEQLR---REANLKRIN 28 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr---~el~~~Rik 28 (70)
|++.+++++.-++.|+ ..+.|+|++
T Consensus 1 ~~~~i~eL~~Dl~El~~Ll~~a~R~rVk 28 (79)
T PF09032_consen 1 MSEQIEELQLDLEELKSLLEQAKRKRVK 28 (79)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5667788877666555 677888887
No 12
>KOG0286|consensus
Probab=52.48 E-value=12 Score=28.39 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHcccchhH
Q psy15078 6 TNLQQQKQITEQLRREANLKRINV 29 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~~~Rikv 29 (70)
+.+++++.|.|+||.++.-.|-+.
T Consensus 2 ~~~~~l~~Eae~L~~qi~~~r~~~ 25 (343)
T KOG0286|consen 2 EELEQLRQEAEQLKNQIRDARKKL 25 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999888664
No 13
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=50.87 E-value=9.6 Score=23.61 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHHcccch
Q psy15078 5 ITNLQQQKQITEQLRREANLKRI 27 (70)
Q Consensus 5 ~~~~~~~k~~ve~Lr~el~~~Ri 27 (70)
...+..+..+|++||.++...|-
T Consensus 55 ~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 55 ENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888887774
No 14
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=50.38 E-value=32 Score=24.49 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=31.6
Q ss_pred chhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh
Q psy15078 4 MITNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINE 42 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~ 42 (70)
|..++++++.+|.+||-++....-.+.+.-+.-.++..+
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~d 97 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQ 97 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999988888888776665543
No 15
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=50.17 E-value=5.2 Score=25.78 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=0.7
Q ss_pred chhhHHHHHHHHHHHHHHHcccchhHHH
Q psy15078 4 MITNLQQQKQITEQLRREANLKRINVSQ 31 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~RikvS~ 31 (70)
++.++.++|.+|+|-|..++ ||+||.
T Consensus 88 ls~nI~~IrelI~qAR~~An--~IkV~m 113 (138)
T PF06009_consen 88 LSRNISRIRELIAQARDAAN--RIKVSM 113 (138)
T ss_dssp --------------------------B-
T ss_pred HHHHHHHHHHHHHHHHHHHh--heeeee
Confidence 56789999999999999987 566663
No 16
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=49.60 E-value=13 Score=28.87 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhh
Q psy15078 5 ITNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEH 43 (70)
Q Consensus 5 ~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~ 43 (70)
...++.+-++|++|+.|+...|--.+.++..|++-=.+.
T Consensus 356 ~~~i~~LDrEI~~Lk~E~~lRk~l~~nT~~~il~r~~~r 394 (418)
T TIGR03755 356 DKAIDKLDREINNLKTELELRKELASNTALTILQRHHAR 394 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhH
Confidence 457888999999999999999999999999998876655
No 17
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=48.42 E-value=21 Score=19.23 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=28.8
Q ss_pred chhhHHHHHHHHHHHHHHHcc------cchhHHHHHHHHHHHHHhh
Q psy15078 4 MITNLQQQKQITEQLRREANL------KRINVSQAIQDIIKYINEH 43 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~------~RikvS~a~~~li~yc~~~ 43 (70)
|+.+.+.++.+|++-|.+|.. .|+.++.-+.+...+...+
T Consensus 1 m~~~~~~ie~dIe~tR~~La~tvd~L~~r~~P~~~a~~~~~~~r~~ 46 (49)
T PF12277_consen 1 MSRSPDEIERDIERTRAELAETVDELAARLSPKRLADEAKERVRAR 46 (49)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 566788889999999888774 4666666666666665544
No 18
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=47.70 E-value=14 Score=29.18 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=16.5
Q ss_pred chhhHHHHHHHHHHHHHHHcc
Q psy15078 4 MITNLQQQKQITEQLRREANL 24 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~ 24 (70)
++ .|+++++++++||.++.-
T Consensus 30 ~q-kie~L~kql~~Lk~q~~~ 49 (489)
T PF11853_consen 30 LQ-KIEALKKQLEELKAQQDD 49 (489)
T ss_pred HH-HHHHHHHHHHHHHHhhcc
Confidence 44 789999999999998773
No 19
>PRK11546 zraP zinc resistance protein; Provisional
Probab=44.28 E-value=34 Score=22.82 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHcccchhHHHHHHH
Q psy15078 7 NLQQQKQITEQLRREANLKRINVSQAIQD 35 (70)
Q Consensus 7 ~~~~~k~~ve~Lr~el~~~RikvS~a~~~ 35 (70)
.+..+.+||..||.+|.-.|++.....+.
T Consensus 90 kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 90 KINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999987765544
No 20
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=43.43 E-value=28 Score=17.85 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHcc
Q psy15078 6 TNLQQQKQITEQLRREANL 24 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~~ 24 (70)
+-.+++|+.-||||..|..
T Consensus 8 sekeqLrrr~eqLK~kLeq 26 (32)
T PF02344_consen 8 SEKEQLRRRREQLKHKLEQ 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4568888888888877653
No 21
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=43.04 E-value=56 Score=18.85 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=27.3
Q ss_pred HHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCc
Q psy15078 15 TEQLRREANLKRINVSQAIQDIIKYINEHQHEDC 48 (70)
Q Consensus 15 ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dp 48 (70)
-..|..-++.....-+++...|-+|+.++.=.||
T Consensus 8 s~~L~~~lg~~~~sr~~v~~~lw~YIk~~~L~dp 41 (76)
T PF02201_consen 8 SPELAEFLGEDELSRSEVVKRLWQYIKENNLQDP 41 (76)
T ss_dssp HHHHHHHTT-SCEEHHHHHHHHHHHHHHTTSBES
T ss_pred CHHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCCc
Confidence 3456777888888999999999999999986665
No 22
>CHL00163 ycf65 putative ribosomal protein 3; Validated
Probab=42.23 E-value=43 Score=21.24 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=25.0
Q ss_pred HHHHHHHc-------ccchhHHHHHHHHHHHHHhhCcC
Q psy15078 16 EQLRREAN-------LKRINVSQAIQDIIKYINEHQHE 46 (70)
Q Consensus 16 e~Lr~el~-------~~RikvS~a~~~li~yc~~~~~~ 46 (70)
|+||.+|+ .+||.+-.-+.++|+|=+++...
T Consensus 43 e~LK~~LesK~WIs~~~~i~lLN~~TeiIN~Wqe~~~~ 80 (99)
T CHL00163 43 ELLKLELESKPWISEDERIEILNKTTEIINYWQENKKK 80 (99)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHccCC
Confidence 67777774 56888888999999999997654
No 23
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.43 E-value=74 Score=20.43 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=28.3
Q ss_pred chhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhh
Q psy15078 4 MITNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEH 43 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~ 43 (70)
|++++.+..-++..||.++.+---.=..+.++|++-...+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888877665555555666666665554
No 24
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=39.05 E-value=45 Score=19.99 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=28.8
Q ss_pred HHHHHHHcccchhHHHHHHHHHHH---HHhhCcCCcccccCCC
Q psy15078 16 EQLRREANLKRINVSQAIQDIIKY---INEHQHEDCLLVGFSS 55 (70)
Q Consensus 16 e~Lr~el~~~RikvS~a~~~li~y---c~~~~~~Dpll~g~~~ 55 (70)
+.|..+|++.|.-|-++++.|.+- ++....+-+.+.+.++
T Consensus 23 e~La~~LgiSRtaVwK~Iq~Lr~~G~~I~s~~~kGY~L~~~~~ 65 (79)
T COG1654 23 EKLAEELGISRTAVWKHIQQLREEGVDIESVRGKGYLLPQLPD 65 (79)
T ss_pred HHHHHHHCccHHHHHHHHHHHHHhCCceEecCCCceeccCccc
Confidence 578899999999999999999863 3444444555555443
No 25
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=38.84 E-value=37 Score=19.97 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHHHHHcc
Q psy15078 5 ITNLQQQKQITEQLRREANL 24 (70)
Q Consensus 5 ~~~~~~~k~~ve~Lr~el~~ 24 (70)
...++.++++++.||..+.+
T Consensus 71 ~~~~~~l~~~l~~l~~~~~~ 90 (91)
T cd04766 71 EEELAELRAELDELRARLRR 90 (91)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34566677777777766654
No 26
>PF02831 gpW: gpW; InterPro: IPR004174 GpW is a 68 residue protein known to be present in phage particles. Extracts of phage-infected cells lacking GpW contain DNA-filled heads, and active tails, but no infectious virions. GpW is required for the addition of GpFII to the head, which is, in turn, required for the attachment of tails. Since GpFII and tails are known to be attached at the connector, GpW is also likely to assemble at this site. The addition of GpW to filled heads increases the DNase resistance of the packaged DNA, suggesting that GpW either forms a plug at the connector to prevent ejection of the DNA, or binds directly to the DNA. The large number of positively charged residues in GpW (its calculated pI is 10.8) is consistent with a role in DNA interaction [].; GO: 0019067 viral assembly, maturation, egress, and release; PDB: 2L6Q_A 2L6R_A 1HYW_A.
Probab=38.82 E-value=47 Score=19.46 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHccc
Q psy15078 5 ITNLQQQKQITEQLRREANLK 25 (70)
Q Consensus 5 ~~~~~~~k~~ve~Lr~el~~~ 25 (70)
.+++.+++..|.+|+.+|+..
T Consensus 37 ~a~i~~L~~yI~~L~~~Lg~~ 57 (68)
T PF02831_consen 37 QANIGDLRAYIQQLEAQLGIV 57 (68)
T ss_dssp GGGHHHHHHHHHHHHHHTTST
T ss_pred cCCHHHHHHHHHHHHHHhCcC
Confidence 578999999999999999876
No 27
>PRK02724 hypothetical protein; Provisional
Probab=38.63 E-value=54 Score=20.98 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=25.9
Q ss_pred HHHHHHHc-------ccchhHHHHHHHHHHHHHhhCcCCcc
Q psy15078 16 EQLRREAN-------LKRINVSQAIQDIIKYINEHQHEDCL 49 (70)
Q Consensus 16 e~Lr~el~-------~~RikvS~a~~~li~yc~~~~~~Dpl 49 (70)
|+||.+|+ .+||.+-.-+.++|+|=++.....++
T Consensus 48 e~LK~~LesK~WIs~~~~i~lLN~~TeiIN~WQe~~~~~~~ 88 (104)
T PRK02724 48 EQLKTELESKHWITENERVEVLNKATEVINYWQEEGKGKPL 88 (104)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHccCCCCh
Confidence 67777775 45788888999999999986554444
No 28
>PHA02570 dexA exonuclease; Provisional
Probab=38.34 E-value=57 Score=23.30 Aligned_cols=40 Identities=8% Similarity=0.222 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHHH--cccchhHHHHHHHHHHHHHhhC
Q psy15078 5 ITNLQQQKQITEQLRREA--NLKRINVSQAIQDIIKYINEHQ 44 (70)
Q Consensus 5 ~~~~~~~k~~ve~Lr~el--~~~RikvS~a~~~li~yc~~~~ 44 (70)
.+|++=.+++-+.-|..+ +-+++.+.+|+.++.+|+.++.
T Consensus 62 ~~TI~WW~kQS~EAR~~L~~s~~~~~l~~al~~F~~fi~~~~ 103 (220)
T PHA02570 62 KSTIEWWKNQSPEARKNLKPSDEDVSTYEGHKKFFEYLEANG 103 (220)
T ss_pred chHHHHHHhCCHHHHHhccCCCccccHHHHHHHHHHHHHHcC
Confidence 356777777777788887 4578999999999999999987
No 29
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=37.95 E-value=70 Score=18.77 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHcccc
Q psy15078 6 TNLQQQKQITEQLRREANLKR 26 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~~~R 26 (70)
..+.-++.+|++|+.|+...-
T Consensus 32 eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 32 ERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 456778889999988876554
No 30
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.69 E-value=90 Score=20.91 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=36.8
Q ss_pred chhhHHHHHHHHHHHHHH--HcccchhHHHHHHHHHHHHHhhCcCCccc
Q psy15078 4 MITNLQQQKQITEQLRRE--ANLKRINVSQAIQDIIKYINEHQHEDCLL 50 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~e--l~~~RikvS~a~~~li~yc~~~~~~Dpll 50 (70)
...+++.+..+||.||.. -+-.+-+..+-.+.|.+-+.+..+.||.-
T Consensus 8 f~~ql~~L~~~Ve~l~~~dP~~y~~~~~~KlLaai~~li~e~IP~DP~~ 56 (140)
T PF11663_consen 8 FLEQLEALIAAVERLRAKDPEGYRKKPNTKLLAAISKLIFEVIPADPTR 56 (140)
T ss_pred HHHHHHHHHHHHHHHHhcChHhhhhchHHHHHHHHHHHHHhhccCCCCc
Confidence 457889999999999976 23446667777788888888888999874
No 31
>PF10850 DUF2653: Protein of unknown function (DUF2653); InterPro: IPR020516 This entry contains proteins with no known function.
Probab=37.02 E-value=29 Score=21.68 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhCcCCcccccCC
Q psy15078 31 QAIQDIIKYINEHQHEDCLLVGFS 54 (70)
Q Consensus 31 ~a~~~li~yc~~~~~~Dpll~g~~ 54 (70)
.-.+.|+.|.+++..-||+..|+.
T Consensus 58 nlieAIr~~l~~~~~~~p~~~~i~ 81 (91)
T PF10850_consen 58 NLIEAIRQYLEEEYNMDPFRAGIE 81 (91)
T ss_pred hHHHHHHHHHHHHhCCCcchhheE
Confidence 457789999999999999987753
No 32
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.68 E-value=86 Score=17.77 Aligned_cols=35 Identities=9% Similarity=0.335 Sum_probs=24.9
Q ss_pred chhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh
Q psy15078 4 MITNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINE 42 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~ 42 (70)
+.+++..+|++++++|.++. ++-+...+|++-.+-
T Consensus 12 ~~~~i~tvk~en~~i~~~ve----~i~envk~ll~lYE~ 46 (55)
T PF05377_consen 12 IESSINTVKKENEEISESVE----KIEENVKDLLSLYEV 46 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 45678888899999888776 344555677776664
No 33
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=35.53 E-value=46 Score=18.03 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=16.3
Q ss_pred HHHHHHHHcccchhHHHHHHHHH
Q psy15078 15 TEQLRREANLKRINVSQAIQDII 37 (70)
Q Consensus 15 ve~Lr~el~~~RikvS~a~~~li 37 (70)
-+.||..+...|+++-..++.|+
T Consensus 34 ~~~Lr~~Am~~~~~l~~vA~~ii 56 (56)
T PF03861_consen 34 YRLLRRQAMRRRRSLADVAEEII 56 (56)
T ss_dssp HHHHHHHHHHCTS-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHC
Confidence 45677788888888887777764
No 34
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=35.39 E-value=44 Score=20.02 Aligned_cols=18 Identities=22% Similarity=0.549 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhCcCC
Q psy15078 30 SQAIQDIIKYINEHQHED 47 (70)
Q Consensus 30 S~a~~~li~yc~~~~~~D 47 (70)
|.+.+.+++||+-|..+.
T Consensus 51 ~~~L~~Vi~yc~~h~~~~ 68 (104)
T smart00512 51 SKILSKVIEYCEHHVDDP 68 (104)
T ss_pred HHHHHHHHHHHHHcccCC
Confidence 578899999999987543
No 35
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=34.99 E-value=97 Score=18.15 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhC
Q psy15078 6 TNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQ 44 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~ 44 (70)
..+..+...+..+......-|-.|......|+.+.++..
T Consensus 21 ~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e 59 (127)
T smart00502 21 DALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRK 59 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777888888888889999999988765
No 36
>PF09590 Env-gp36: Lentivirus surface glycoprotein; InterPro: IPR018582 The proteins in this family are envelope glycoproteins from feline immunodeficiency retrovirus. The process of lentiviral envelope glycoprotein-mediated fusion of membranes is essential for viral entry and syncytia formation [].
Probab=34.21 E-value=46 Score=26.96 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=16.4
Q ss_pred HHHHHHH-HHhhCcCCcccccCC-CCCCCCCCCCC
Q psy15078 33 IQDIIKY-INEHQHEDCLLVGFS-SQKSNPFKEKT 65 (70)
Q Consensus 33 ~~~li~y-c~~~~~~Dpll~g~~-~~~~NP~~~k~ 65 (70)
+|.|++| +.+...+| |+. | +-|||+.+|
T Consensus 13 gE~LLDfdi~~~~~EE----gpl~P-g~NPFR~pG 42 (591)
T PF09590_consen 13 GEELLDFDIATQMNEE----GPLNP-GVNPFRVPG 42 (591)
T ss_pred HHhhhhHHHHHHhccc----CCCCC-CCCCccCCC
Confidence 5667776 23333344 433 4 369999975
No 37
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=33.42 E-value=1.1e+02 Score=20.39 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcccchh----------HHHHHHHHHHHHHhhCcCCcccc
Q psy15078 13 QITEQLRREANLKRIN----------VSQAIQDIIKYINEHQHEDCLLV 51 (70)
Q Consensus 13 ~~ve~Lr~el~~~Rik----------vS~a~~~li~yc~~~~~~Dpll~ 51 (70)
+++++||..++..+.. +..+|.-|+.|..+-. ||++.
T Consensus 47 ~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~llK~flr~Lp--~pli~ 93 (196)
T cd04395 47 AAISALQEELNRGGFDIDLQDPRWRDVNVVSSLLKSFFRKLP--EPLFT 93 (196)
T ss_pred HHHHHHHHHHhcCCCCcCccccccccHHHHHHHHHHHHHhCC--CccCC
Confidence 5677777777766532 4457888899999886 88874
No 38
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=32.93 E-value=73 Score=22.96 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHcc
Q psy15078 7 NLQQQKQITEQLRREANL 24 (70)
Q Consensus 7 ~~~~~k~~ve~Lr~el~~ 24 (70)
++.++++|+++||.|+..
T Consensus 67 ~~~~l~~EN~~Lr~e~~~ 84 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLK 84 (283)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556778888888877653
No 39
>KOG2808|consensus
Probab=32.09 E-value=44 Score=25.41 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhCcCCc
Q psy15078 29 VSQAIQDIIKYINEHQHEDC 48 (70)
Q Consensus 29 vS~a~~~li~yc~~~~~~Dp 48 (70)
--+|...|+.||+.+-+.||
T Consensus 311 yiQ~lKRlmT~cq~~~pt~P 330 (341)
T KOG2808|consen 311 YIQALKRLMTFCQRYFPTDP 330 (341)
T ss_pred HHHHHHHHHHHHHHhCCCCc
Confidence 34788899999999999997
No 40
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=32.06 E-value=47 Score=22.65 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhCcCCc
Q psy15078 33 IQDIIKYINEHQHEDC 48 (70)
Q Consensus 33 ~~~li~yc~~~~~~Dp 48 (70)
..+||+|++.+...|-
T Consensus 33 y~aLI~Yv~~nK~~Dn 48 (161)
T PF08694_consen 33 YQALIKYVENNKENDN 48 (161)
T ss_dssp HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcccccC
Confidence 4569999999987663
No 41
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=31.79 E-value=47 Score=18.60 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHcccch
Q psy15078 6 TNLQQQKQITEQLRREANLKRI 27 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~~~Ri 27 (70)
.-+..+..++..||.+|++.|.
T Consensus 29 ~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 29 KRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4577788899999999988764
No 42
>PF05939 Phage_min_tail: Phage minor tail protein; InterPro: IPR010265 This entry is represented by Bacteriophage lambda, GpM, the minor tail protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of a series of phage minor tail proteins and related sequences from several bacterial species.
Probab=31.39 E-value=40 Score=20.93 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhCcCCcccccCCC
Q psy15078 31 QAIQDIIKYINEHQHEDCLLVGFSS 55 (70)
Q Consensus 31 ~a~~~li~yc~~~~~~Dpll~g~~~ 55 (70)
..+..|.+|+..|...-||+|.+|.
T Consensus 53 ~~~~~I~~FL~~h~G~~sF~WtpP~ 77 (109)
T PF05939_consen 53 AEIRAIEAFLDRHGGVKSFLWTPPG 77 (109)
T ss_pred HHHHHHHHHHHHCCCceEEEEECCC
Confidence 3455699999999999999998665
No 43
>PF15058 Speriolin_N: Speriolin N terminus
Probab=30.85 E-value=43 Score=23.71 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCccccc
Q psy15078 9 QQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVG 52 (70)
Q Consensus 9 ~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dpll~g 52 (70)
+.+||+|.-+|..-...|. .|++|.+-- ++..+|-|+..
T Consensus 22 eeLKKlVrLirEN~eLksa-L~ea~~~~~----~r~~~~vf~pp 60 (200)
T PF15058_consen 22 EELKKLVRLIRENHELKSA-LGEACAEPS----QRQGNDVFLPP 60 (200)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhcccc----cccCCceecCC
Confidence 4567777777777666666 666665532 23445666643
No 44
>PF14473 RD3: RD3 protein
Probab=30.44 E-value=41 Score=22.26 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=33.0
Q ss_pred HHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCcccccC
Q psy15078 15 TEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGF 53 (70)
Q Consensus 15 ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dpll~g~ 53 (70)
.|+|+.|--..+|+-|++..-|..|=+--+.+||..+-+
T Consensus 75 ~ErlqLE~lCski~P~~~g~vI~RFRellae~e~~~~Ev 113 (133)
T PF14473_consen 75 GERLQLEDLCSKIPPCECGPVISRFRELLAENEPEVWEV 113 (133)
T ss_pred HHHHHHHHHHhcCChhhhHHHHHHHHHHHHccCCCHHHH
Confidence 578889999999999999999999987667779887543
No 45
>KOG1724|consensus
Probab=30.02 E-value=54 Score=22.12 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhCcCCccc
Q psy15078 29 VSQAIQDIIKYINEHQHEDCLL 50 (70)
Q Consensus 29 vS~a~~~li~yc~~~~~~Dpll 50 (70)
.|....-+|.||+.|...||-.
T Consensus 52 ~~~iL~kVIewC~~Hk~d~~~~ 73 (162)
T KOG1724|consen 52 TSKILKKVIEWCKKHKDDDPAN 73 (162)
T ss_pred CHHHHHHHHHHHHHcccccccc
Confidence 3567888999999998665544
No 46
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=29.91 E-value=97 Score=16.89 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.3
Q ss_pred HHHHHHHHcccchhHHHHHHHHHH
Q psy15078 15 TEQLRREANLKRINVSQAIQDIIK 38 (70)
Q Consensus 15 ve~Lr~el~~~RikvS~a~~~li~ 38 (70)
++.+-..++++|-+|+.+...|.+
T Consensus 25 ~~eIa~~l~i~~~~v~~~L~~L~~ 48 (68)
T PF01978_consen 25 AEEIAEELGISRSTVYRALKSLEE 48 (68)
T ss_dssp HHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 566778999999999999888865
No 47
>PRK09109 motC flagellar motor protein; Reviewed
Probab=29.07 E-value=94 Score=21.97 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=37.7
Q ss_pred chhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCc
Q psy15078 4 MITNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDC 48 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dp 48 (70)
.+......++....++..+..++....+..+.+.++.+....++.
T Consensus 49 i~~~~~~~~~~~~~~~~~f~~~~~~~~~~i~~l~~l~~~~r~~gl 93 (246)
T PRK09109 49 LQTPLAVFKRAFKILRWVFFPPRSDLEGGIDRIVEWSNTARKEGL 93 (246)
T ss_pred HhCCHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhhH
Confidence 456778889999999999998898899999999999888765554
No 48
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=28.86 E-value=36 Score=24.47 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.4
Q ss_pred chhhHHHHHHHHHHHHHHHcccchhHH
Q psy15078 4 MITNLQQQKQITEQLRREANLKRINVS 30 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~RikvS 30 (70)
|..|+..++..+|+||.+=-|.++++=
T Consensus 165 MTttm~~~~~viE~L~eeGiRd~v~v~ 191 (227)
T COG5012 165 MTTTMIGMKDVIELLKEEGIRDKVIVM 191 (227)
T ss_pred HHHHHHHHHHHHHHHHHcCCccCeEEe
Confidence 677889999999999998877777653
No 49
>COG0207 ThyA Thymidylate synthase [Nucleotide transport and metabolism]
Probab=28.83 E-value=20 Score=26.26 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHcccchhHH
Q psy15078 7 NLQQQKQITEQLRREANLKRINVS 30 (70)
Q Consensus 7 ~~~~~k~~ve~Lr~el~~~RikvS 30 (70)
.++|+.+.|++||..-+.+|.-||
T Consensus 112 ~iDQi~~vIe~Lk~np~sRR~ivs 135 (268)
T COG0207 112 KIDQIDKVIEQLKENPDSRRAIVS 135 (268)
T ss_pred ccHHHHHHHHHHhcCCcccceEEE
Confidence 578999999999999999998877
No 50
>PF14071 YlbD_coat: Putative coat protein
Probab=28.70 E-value=1.3e+02 Score=19.76 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHhhCcCCcccccCCCCCCCCCC
Q psy15078 27 INVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFK 62 (70)
Q Consensus 27 ikvS~a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~ 62 (70)
-.||+|+..+..++.+....-.=-. +.+..|||-
T Consensus 87 ~~~sqai~~vQ~~l~qFq~~~~~~~--~~~~~~PFs 120 (124)
T PF14071_consen 87 NNVSQAIGSVQQVLSQFQGNGQKQS--QRSPEHPFS 120 (124)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC--CCCCCCCCc
Confidence 3799999999999998763322111 233468974
No 51
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.31 E-value=72 Score=17.44 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHccc
Q psy15078 7 NLQQQKQITEQLRREANLK 25 (70)
Q Consensus 7 ~~~~~k~~ve~Lr~el~~~ 25 (70)
.+.+++++++.++.|++..
T Consensus 49 ~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3445555666665555443
No 52
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=28.27 E-value=1.1e+02 Score=19.26 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=33.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhC
Q psy15078 2 DMMITNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQ 44 (70)
Q Consensus 2 ~~~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~ 44 (70)
|++.++-+..+..+..||..+.-..-++---+-.|+++|-.|.
T Consensus 31 D~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNc 73 (140)
T PF00790_consen 31 DLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNC 73 (140)
T ss_dssp HHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 3344555567788888999998887788888888999999886
No 53
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=28.25 E-value=55 Score=18.80 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhC
Q psy15078 30 SQAIQDIIKYINEHQ 44 (70)
Q Consensus 30 S~a~~~li~yc~~~~ 44 (70)
|.=.++.++||+++.
T Consensus 26 SV~~~eV~~YC~~~G 40 (57)
T PF08727_consen 26 SVDSPEVREYCEEQG 40 (57)
T ss_dssp HH--HHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHCC
Confidence 455677999999985
No 54
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.20 E-value=59 Score=19.26 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=18.8
Q ss_pred chhhHHHHHHHHHHHHHHHcccc
Q psy15078 4 MITNLQQQKQITEQLRREANLKR 26 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~R 26 (70)
+.-+++++..+++.|+.++.+.|
T Consensus 50 i~~s~eeq~~~i~~Le~~i~~k~ 72 (83)
T PF07544_consen 50 IDRSVEEQEEEIEELEEQIRKKR 72 (83)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHH
Confidence 55688888999999998887766
No 55
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.89 E-value=54 Score=17.58 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHcc
Q psy15078 6 TNLQQQKQITEQLRREANL 24 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~~ 24 (70)
+.-+.++++++.|+.++..
T Consensus 19 ~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 19 AEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445566666666665543
No 56
>PF10874 DUF2746: Protein of unknown function (DUF2746); InterPro: IPR022704 The proteins in this entry are uncharacterised.
Probab=27.88 E-value=55 Score=18.74 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHcccch
Q psy15078 7 NLQQQKQITEQLRREANLKRI 27 (70)
Q Consensus 7 ~~~~~k~~ve~Lr~el~~~Ri 27 (70)
.+.++++.+-.||.++..+|+
T Consensus 27 ~~~~~~rDigglReelrtER~ 47 (57)
T PF10874_consen 27 GFREMRRDIGGLREELRTERR 47 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999999988875
No 57
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=27.51 E-value=1.5e+02 Score=20.31 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcc-----------cchhHHHHHHHHHHHHHhhCcCCcccc
Q psy15078 13 QITEQLRREANL-----------KRINVSQAIQDIIKYINEHQHEDCLLV 51 (70)
Q Consensus 13 ~~ve~Lr~el~~-----------~RikvS~a~~~li~yc~~~~~~Dpll~ 51 (70)
..+++||.+++. .-..+..++.-|..|.-+-. |||++
T Consensus 51 ~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~va~~LK~ylReLP--epL~~ 98 (212)
T cd04399 51 KETHQLRNLLNKPKKPDKEVIILKKFEPSTVASVLKLYLLELP--DSLIP 98 (212)
T ss_pred HHHHHHHHHHcCCCCcchhhhccccCCHHHHHHHHHHHHHHCC--CccCC
Confidence 345666665553 23458888889999999987 99873
No 58
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=27.48 E-value=62 Score=18.80 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHcccc
Q psy15078 6 TNLQQQKQITEQLRREANLKR 26 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~~~R 26 (70)
.....++.+++.|+.++...|
T Consensus 47 ~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 47 EENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 355677777888887765443
No 59
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=27.38 E-value=69 Score=18.44 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q psy15078 9 QQQKQITEQLRRE 21 (70)
Q Consensus 9 ~~~k~~ve~Lr~e 21 (70)
..+.+-|..|+.|
T Consensus 6 ~s~e~~i~FLq~e 18 (60)
T PF14916_consen 6 QSLEKSILFLQQE 18 (60)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 60
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=27.11 E-value=1.6e+02 Score=19.15 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHHHHHHHHcccchhHH----HHHHHHHHHHHh
Q psy15078 4 MITNLQQQKQITEQLRREANLKRINVS----QAIQDIIKYINE 42 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~RikvS----~a~~~li~yc~~ 42 (70)
+.+.+.++..+.+||..++.+---..+ .....+..++++
T Consensus 25 l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~ 67 (131)
T PF11068_consen 25 LQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQ 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 456778888889999888877655555 566666666554
No 61
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=26.43 E-value=1.8e+02 Score=18.89 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=35.7
Q ss_pred HHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCccc---ccCCCCCCCC
Q psy15078 15 TEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLL---VGFSSQKSNP 60 (70)
Q Consensus 15 ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dpll---~g~~~~~~NP 60 (70)
-..|+..+-=.-+-+-.....|..|.....+.=||+ +|++..+.|-
T Consensus 20 ~~~L~~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~ 68 (127)
T PF06309_consen 20 EKDLQRNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNF 68 (127)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHH
Confidence 455666777777778888899999999988999996 7877666553
No 62
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=26.32 E-value=1.3e+02 Score=17.24 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHcccc
Q psy15078 7 NLQQQKQITEQLRREANLKR 26 (70)
Q Consensus 7 ~~~~~k~~ve~Lr~el~~~R 26 (70)
.+..++.+|++++.++...+
T Consensus 29 RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 29 RIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666665555443
No 63
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=26.19 E-value=1.4e+02 Score=17.18 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=24.8
Q ss_pred HHHHHHcccchhHHHHHHHHHHHHHhhCcCCc
Q psy15078 17 QLRREANLKRINVSQAIQDIIKYINEHQHEDC 48 (70)
Q Consensus 17 ~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dp 48 (70)
.|..=++......+++...+-+|+..|.=.||
T Consensus 10 ~L~~~lg~~~~tr~ev~~~lw~YIk~n~L~d~ 41 (77)
T smart00151 10 ELAKVLGAPEMTRTEIIKRLWEYIKEHNLQDP 41 (77)
T ss_pred HHHHHhCCCcCcHHHHHHHHHHHHHHhcccCC
Confidence 45555667888899999999999998864443
No 64
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=26.03 E-value=60 Score=21.50 Aligned_cols=21 Identities=29% Similarity=0.552 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHcccch
Q psy15078 7 NLQQQKQITEQLRREANLKRI 27 (70)
Q Consensus 7 ~~~~~k~~ve~Lr~el~~~Ri 27 (70)
+++.+++...++|+.+.-+||
T Consensus 73 t~e~~~~~~~~~R~~a~~~Rv 93 (154)
T PF14538_consen 73 TVEDLKRLCQSLRRNAKDERV 93 (154)
T ss_pred CHHHHHHHHHHHHhhCCCceE
Confidence 445555555555555555554
No 65
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=25.66 E-value=1.8e+02 Score=19.26 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcccch---------hHHHHHHHHHHHHHhhCcCCcccc
Q psy15078 13 QITEQLRREANLKRI---------NVSQAIQDIIKYINEHQHEDCLLV 51 (70)
Q Consensus 13 ~~ve~Lr~el~~~Ri---------kvS~a~~~li~yc~~~~~~Dpll~ 51 (70)
..+++||..++.... .+-.+|.-|+.|..+-. +||+.
T Consensus 45 ~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~fLReLP--epLi~ 90 (187)
T cd04403 45 AVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLFFRELP--EPLFP 90 (187)
T ss_pred HHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHHHhcCC--CCcCC
Confidence 446777777665432 34557778999999886 88874
No 66
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=25.64 E-value=76 Score=17.69 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHH
Q psy15078 10 QQKQITEQLRREANLKRINVSQAIQ 34 (70)
Q Consensus 10 ~~k~~ve~Lr~el~~~RikvS~a~~ 34 (70)
.+.++++.||......|-++-.|.+
T Consensus 23 ~ME~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 23 EMEQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHh
Confidence 4678899999999999988887764
No 67
>PF00286 Flexi_CP: Viral coat protein; InterPro: IPR000052 Potexviruses and Carlaviruses are plant-infecting viruses whose genome consist of a single-stranded RNA molecule encapsided in a coat protein. The genome of many Potexviruses is known and their coat protein sequence has been shown to be rather well conserved []. The same observation applies to the coat protein of a variety of Carlaviruses whose sequences are related to those of Potexviruses [, ]. The coat proteins of Potexviruses and of Carlaviruses contain from 190 to 300 amino acid residues. The best conserved region of these coat proteins is located in the central part.; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 4DOX_B.
Probab=25.63 E-value=2.1e+02 Score=18.96 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCcc
Q psy15078 6 TNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCL 49 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dpl 49 (70)
+|-+++.+....|.. ++.+--.+.+++-+|.-||-.....+..
T Consensus 5 At~e~i~~I~~~~~~-lgvp~~~~~~~~~~la~~C~d~gSS~~~ 47 (140)
T PF00286_consen 5 ATPEEIAAISAALQG-LGVPTESVAKVAWDLARYCADNGSSRYT 47 (140)
T ss_dssp --HHHHHHHHHHHHH-TT--GGGHHHHHHHHHHHHHHH---TT-
T ss_pred CCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCCCCccc
Confidence 456778777788877 9999999999999999999999877755
No 68
>PHA00728 hypothetical protein
Probab=25.39 E-value=75 Score=21.24 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy15078 6 TNLQQQKQITEQLRREA 22 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el 22 (70)
..++++|++++.||..|
T Consensus 5 teveql~keneelkkkl 21 (151)
T PHA00728 5 TEVEQLKKENEELKKKL 21 (151)
T ss_pred hHHHHHHHhHHHHHHHH
Confidence 46788889998888754
No 69
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=24.65 E-value=83 Score=18.59 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHhhCcCCcccccCCCCCCCCCC
Q psy15078 27 INVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFK 62 (70)
Q Consensus 27 ikvS~a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~ 62 (70)
-++..|.+.|.++|+++-..++=+.=+.. ..||..
T Consensus 13 p~S~~ai~nl~~i~e~~l~~~~~LeVIDv-~~~P~l 47 (72)
T cd02978 13 PKSERALQNLKRILEELLGGPYELEVIDV-LKQPQL 47 (72)
T ss_pred chHHHHHHHHHHHHHHhcCCcEEEEEEEc-ccCHhH
Confidence 35667889999999999744443432222 246653
No 70
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=24.57 E-value=1.5e+02 Score=17.00 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhh
Q psy15078 10 QQKQITEQLRREANLKRINVSQAIQDIIKYINEH 43 (70)
Q Consensus 10 ~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~ 43 (70)
-+|..|.|+=+..+.+|++-| |.+.|.+..+++
T Consensus 7 ll~~~Vaqil~~~Gf~~~~~s-ale~ltdi~~~y 39 (77)
T smart00576 7 LLRIAVAQILESAGFDSFQES-ALETLTDILQSY 39 (77)
T ss_pred HHHHHHHHHHHHcCccccCHH-HHHHHHHHHHHH
Confidence 366778888888999999888 666655544443
No 71
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=24.48 E-value=1.2e+02 Score=15.86 Aligned_cols=31 Identities=16% Similarity=0.349 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcccchhHHHHHHH-HHHHHHhh
Q psy15078 13 QITEQLRREANLKRINVSQAIQD-IIKYINEH 43 (70)
Q Consensus 13 ~~ve~Lr~el~~~RikvS~a~~~-li~yc~~~ 43 (70)
...++|+.-....+|+.|+-.+. |-.|.+.|
T Consensus 12 el~~~L~~ls~~t~i~~S~Ll~eAle~~l~ky 43 (44)
T PF12651_consen 12 ELYEKLKELSEETGIPKSKLLREALEDYLEKY 43 (44)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 45677777777777888876654 44455443
No 72
>KOG0604|consensus
Probab=24.43 E-value=57 Score=25.17 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHhhCcCCcc-cccCCCCCCCCCCCC
Q psy15078 28 NVSQAIQDIIKYINEHQHEDCL-LVGFSSQKSNPFKEK 64 (70)
Q Consensus 28 kvS~a~~~li~yc~~~~~~Dpl-l~g~~~~~~NP~~~k 64 (70)
-||+++.++|.-.-...+.+=| +.++-. +||+..
T Consensus 293 ~VSe~aKdlIR~LLkt~PteRlTI~~~m~---hpwi~~ 327 (400)
T KOG0604|consen 293 CVSEAAKDLIRKLLKTEPTERLTIEEVMD---HPWINQ 327 (400)
T ss_pred HHHHHHHHHHHHHhcCCchhheeHHHhhc---Cchhcc
Confidence 4999999999999888777766 455554 899874
No 73
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=24.40 E-value=95 Score=18.79 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhCcCCcccccCCC
Q psy15078 31 QAIQDIIKYINEHQHEDCLLVGFSS 55 (70)
Q Consensus 31 ~a~~~li~yc~~~~~~Dpll~g~~~ 55 (70)
++|.+|++-+.++....||+.++.+
T Consensus 3 ~~c~~il~~l~~~~~s~~F~~pv~~ 27 (97)
T cd05505 3 QKCEEILSKILKYRFSWPFREPVTA 27 (97)
T ss_pred HHHHHHHHHHHhCCCcccccCCCCh
Confidence 5788899999999888999876543
No 74
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=24.37 E-value=1.2e+02 Score=17.27 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCccccc
Q psy15078 7 NLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVG 52 (70)
Q Consensus 7 ~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dpll~g 52 (70)
.+..++.++++++.+-+.=+..++.-. + -+|+++-+..+.-+..
T Consensus 32 ~~~~~~~~~~~l~~en~~L~~ei~~l~-~-~~rIe~~Ar~~lgM~~ 75 (85)
T TIGR02209 32 ELQKLQLEIDKLQKEWRDLQLEVAELS-R-HERIEKIAKKQLGMKL 75 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-C-HHHHHHHHHHhcCCCC
Confidence 445555555555555555444444322 2 5677777776754544
No 75
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=24.28 E-value=66 Score=20.36 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHcccc
Q psy15078 6 TNLQQQKQITEQLRREANLKR 26 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~~~R 26 (70)
.+++.+++.++.||.+|...|
T Consensus 88 ~~i~~~k~~ie~lk~~L~~ak 108 (139)
T PF05615_consen 88 QEIEQAKKEIEELKEELEEAK 108 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999998886544
No 76
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=24.27 E-value=96 Score=14.66 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHc
Q psy15078 8 LQQQKQITEQLRREAN 23 (70)
Q Consensus 8 ~~~~k~~ve~Lr~el~ 23 (70)
++++|..|..|..+|+
T Consensus 3 ~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 3 MNRLRNRISDLERQLS 18 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4667777777777765
No 77
>PF04839 PSRP-3_Ycf65: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); InterPro: IPR006924 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome, 0009536 plastid; PDB: 2KT9_A.
Probab=24.19 E-value=80 Score=17.60 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=20.8
Q ss_pred HHHHHHHc-------ccchhHHHHHHHHHHHHHhh
Q psy15078 16 EQLRREAN-------LKRINVSQAIQDIIKYINEH 43 (70)
Q Consensus 16 e~Lr~el~-------~~RikvS~a~~~li~yc~~~ 43 (70)
|+||.+|. .+||.+-..+.++|.|=++.
T Consensus 14 e~lk~eLe~K~WIs~~e~i~lLN~~TeiIN~Wqe~ 48 (49)
T PF04839_consen 14 EQLKNELESKPWISEKERIELLNQATEIINYWQEE 48 (49)
T ss_dssp HHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 56666664 57888888899999997754
No 78
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=24.19 E-value=44 Score=22.24 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=12.4
Q ss_pred HHHHHHhhCcCCcccc
Q psy15078 36 IIKYINEHQHEDCLLV 51 (70)
Q Consensus 36 li~yc~~~~~~Dpll~ 51 (70)
+...+++|.+|.++|.
T Consensus 30 a~~~i~~HPEYh~~l~ 45 (137)
T PF08897_consen 30 AADVIEEHPEYHALLD 45 (137)
T ss_pred HHHHHHHCcchHHHHh
Confidence 5677888888888873
No 79
>PF15467 SGIII: Secretogranin-3
Probab=24.02 E-value=77 Score=24.73 Aligned_cols=43 Identities=19% Similarity=0.389 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHH---HcccchhHHHHHHHHHHHHHhhCcCCccc-ccCCC
Q psy15078 7 NLQQQKQITEQLRRE---ANLKRINVSQAIQDIIKYINEHQHEDCLL-VGFSS 55 (70)
Q Consensus 7 ~~~~~k~~ve~Lr~e---l~~~RikvS~a~~~li~yc~~~~~~Dpll-~g~~~ 55 (70)
=++..|+-||.||.. -+.+-.-.|+ |.+|+.|.+ |.+| .|+.+
T Consensus 393 YLEAIRKNIEWLKkHnK~gnKeDyDLSK----lrDFi~QQa--DaYveKGIld 439 (453)
T PF15467_consen 393 YLEAIRKNIEWLKKHNKEGNKEDYDLSK----LRDFIDQQA--DAYVEKGILD 439 (453)
T ss_pred HHHHHHHHHHHHHHhccccccccccHHH----HHHHHHHHH--HHHHHhcccc
Confidence 478899999999954 4555666776 999999998 8887 67765
No 80
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=23.85 E-value=84 Score=17.23 Aligned_cols=15 Identities=20% Similarity=0.618 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhC
Q psy15078 30 SQAIQDIIKYINEHQ 44 (70)
Q Consensus 30 S~a~~~li~yc~~~~ 44 (70)
|...+.+++||+-|.
T Consensus 47 ~~~L~kViewc~~H~ 61 (62)
T PF03931_consen 47 SRILKKVIEWCEHHK 61 (62)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC
Confidence 667888899998763
No 81
>KOG3357|consensus
Probab=23.59 E-value=1.1e+02 Score=20.69 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhCcCCc
Q psy15078 32 AIQDIIKYINEHQHEDC 48 (70)
Q Consensus 32 a~~~li~yc~~~~~~Dp 48 (70)
--++||+|++.+...|-
T Consensus 35 ey~sli~yvqnnk~~d~ 51 (167)
T KOG3357|consen 35 EYQSLIAYVQNNKSNDN 51 (167)
T ss_pred HHHHHHHHHHhCcccCC
Confidence 34679999999887664
No 82
>PF02672 CP12: CP12 domain; InterPro: IPR003823 This entry represents an uncharacterised domain in proteins of unknown function. This domain is found associated with CBS domains in some proteins IPR000644 from INTERPRO.; PDB: 3B1K_I 3B1J_D 3RVD_N 3QV1_I 2LJ9_A.
Probab=23.49 E-value=31 Score=20.27 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCc
Q psy15078 10 QQKQITEQLRREANLKRINVSQAIQDIIKYINEHQH 45 (70)
Q Consensus 10 ~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~ 45 (70)
.+-.+|+.|+.+++..|.+.. .-..|=.||++|..
T Consensus 28 ~AWdeVEELqa~~~h~~~~~~-~~~~lE~yC~~nPe 62 (71)
T PF02672_consen 28 HAWDEVEELQAEASHQRQEKK-DKTPLELYCDENPE 62 (71)
T ss_dssp -----------------------TTCHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHccccCC-CCCHHHHHHHHCCC
Confidence 345678888888888876655 44558889999874
No 83
>PRK11677 hypothetical protein; Provisional
Probab=23.48 E-value=1.2e+02 Score=19.84 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHcccchhHHH
Q psy15078 10 QQKQITEQLRREANLKRINVSQ 31 (70)
Q Consensus 10 ~~k~~ve~Lr~el~~~RikvS~ 31 (70)
.+++++++.|.++..-|-.|..
T Consensus 33 ~le~eLe~~k~ele~YkqeV~~ 54 (134)
T PRK11677 33 ALQYELEKNKAELEEYRQELVS 54 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554443
No 84
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.45 E-value=85 Score=17.37 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=8.0
Q ss_pred HHHHHhhCcCCcccc
Q psy15078 37 IKYINEHQHEDCLLV 51 (70)
Q Consensus 37 i~yc~~~~~~Dpll~ 51 (70)
-+|++..+.++.-+.
T Consensus 54 ~~~ie~~AR~~lgm~ 68 (80)
T PF04977_consen 54 PDYIEKVAREKLGMV 68 (80)
T ss_pred HHHHHHHHHHHcCCc
Confidence 355666665554444
No 85
>KOG2182|consensus
Probab=23.33 E-value=60 Score=25.98 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=26.8
Q ss_pred ccchhHHHHHHHHHHHHHhhCcCCcccccCCCCCCCCCCCCC
Q psy15078 24 LKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKEKT 65 (70)
Q Consensus 24 ~~RikvS~a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~~k~ 65 (70)
.....+-+|++||..|+++-...+++-. ++||+.-|
T Consensus 143 lk~LSs~QALaDla~fI~~~n~k~n~~~------~~~WitFG 178 (514)
T KOG2182|consen 143 LKYLSSLQALADLAEFIKAMNAKFNFSD------DSKWITFG 178 (514)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhcCCCC------CCCeEEEC
Confidence 3445678999999999999876665442 26999854
No 86
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.18 E-value=1.6e+02 Score=18.07 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=27.9
Q ss_pred chhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q psy15078 4 MITNLQQQKQITEQLRREANLKRINVSQAIQDI 36 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~l 36 (70)
||=|.+|.+..-+.|+....+.-+...+++++|
T Consensus 1 MSLn~~Q~~~T~~ELq~nf~~~~ls~~~ia~dL 33 (89)
T PF10078_consen 1 MSLNPEQRRATRQELQANFELSGLSLEQIAADL 33 (89)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 566788888888889988888888999888886
No 87
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=22.96 E-value=1.3e+02 Score=18.01 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCc
Q psy15078 9 QQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQH 45 (70)
Q Consensus 9 ~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~ 45 (70)
+..+..+..|+..++-....+---+-.|++||-.|..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g 69 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG 69 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc
Confidence 4456677888888888777777777778899888874
No 88
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=22.78 E-value=1.4e+02 Score=18.90 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=33.2
Q ss_pred cchhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhC
Q psy15078 3 MMITNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQ 44 (70)
Q Consensus 3 ~~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~ 44 (70)
+..++-+..+..+..||..+.-..-.+---+-.|+++|-.|.
T Consensus 27 ~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNc 68 (133)
T smart00288 27 LINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNC 68 (133)
T ss_pred HHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 344444556778888999999888888888888999999886
No 89
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=22.76 E-value=43 Score=18.92 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=15.3
Q ss_pred HHHcccchhHHHHHHHHHHHHH
Q psy15078 20 REANLKRINVSQAIQDIIKYIN 41 (70)
Q Consensus 20 ~el~~~RikvS~a~~~li~yc~ 41 (70)
.+..+.|++-|++.++|.+|-+
T Consensus 35 F~~Al~~~kpSVs~~dl~~ye~ 56 (62)
T PF09336_consen 35 FEEALKKVKPSVSQEDLKKYEE 56 (62)
T ss_dssp HHHHHHTCGGSS-HHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHH
Confidence 4555677788888888888854
No 90
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=22.38 E-value=95 Score=17.66 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=17.1
Q ss_pred cchhhHHHHHHHHHHHHHHHcccchhHH
Q psy15078 3 MMITNLQQQKQITEQLRREANLKRINVS 30 (70)
Q Consensus 3 ~~~~~~~~~k~~ve~Lr~el~~~RikvS 30 (70)
-.++.+..+...|+||..+.+--|--|-
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777666665554443
No 91
>KOG4302|consensus
Probab=22.27 E-value=2e+02 Score=23.77 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCcC
Q psy15078 6 TNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHE 46 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~ 46 (70)
..+..++..+++||.+.+..|..+++....+-++|++-+..
T Consensus 103 e~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~ 143 (660)
T KOG4302|consen 103 EQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP 143 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35677889999999999999999999999999999998865
No 92
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=21.92 E-value=1.8e+02 Score=19.17 Aligned_cols=31 Identities=10% Similarity=0.324 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Q psy15078 7 NLQQQKQITEQLRREANLKRINVSQAIQDII 37 (70)
Q Consensus 7 ~~~~~k~~ve~Lr~el~~~RikvS~a~~~li 37 (70)
.++++.++++.++.+..-.|.+++.....++
T Consensus 74 k~~kl~~el~~~~~~~~~~~~~~~~~~~~~~ 104 (161)
T PF04420_consen 74 KLDKLEEELEKLNKSLSSEKSSFDKSLSKVL 104 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777777776655544
No 93
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=21.33 E-value=1.4e+02 Score=19.56 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=25.8
Q ss_pred HHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCc
Q psy15078 14 ITEQLRREANLKRINVSQAIQDIIKYINEHQHEDC 48 (70)
Q Consensus 14 ~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dp 48 (70)
.++.|=..+++.|-.|++|...|++-=--....++
T Consensus 44 tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek~~ 78 (126)
T COG3355 44 TVDELAEILNRSRSTVYRSLQNLLEAGLVEREKVN 78 (126)
T ss_pred CHHHHHHHHCccHHHHHHHHHHHHHcCCeeeeeec
Confidence 35778899999999999999999864333333343
No 94
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=21.23 E-value=50 Score=23.33 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=17.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHcccchh
Q psy15078 2 DMMITNLQQQKQITEQLRREANLKRIN 28 (70)
Q Consensus 2 ~~~~~~~~~~k~~ve~Lr~el~~~Rik 28 (70)
|++.++++.+....|-++.-+..+|-|
T Consensus 179 ~lYrsnLeKm~qa~el~ee~~~~erkK 205 (206)
T PLN03060 179 DVYRNLLSKLAQAKELIKEYIDRSVCS 205 (206)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence 556777777766666666666666544
No 95
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=21.21 E-value=75 Score=22.98 Aligned_cols=56 Identities=13% Similarity=0.275 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHcccchhHHH---------HHHHHHHHHHhhCcCCcccccCCCCCCCCCCC
Q psy15078 8 LQQQKQITEQLRREANLKRINVSQ---------AIQDIIKYINEHQHEDCLLVGFSSQKSNPFKE 63 (70)
Q Consensus 8 ~~~~k~~ve~Lr~el~~~RikvS~---------a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~~ 63 (70)
...+..+++.||.++..-....++ ...++..+-+.....||....+.....|||..
T Consensus 68 ~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~~~~~~~~~~a~Vi~~~~~~~~~ 132 (284)
T COG1792 68 LKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKESSSDYDPIAARVISRSPDPWSQ 132 (284)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccceeeEEEEecCCchhc
Confidence 445566677777666333322222 22335555555545677765544333577765
No 96
>PHA03162 hypothetical protein; Provisional
Probab=21.14 E-value=70 Score=21.35 Aligned_cols=19 Identities=5% Similarity=0.256 Sum_probs=14.4
Q ss_pred chhhHHHHHHHHHHHHHHH
Q psy15078 4 MITNLQQQKQITEQLRREA 22 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el 22 (70)
+...+.+++.||..||..+
T Consensus 18 LaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 18 LAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5567777888888888777
No 97
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=21.10 E-value=68 Score=20.88 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=15.5
Q ss_pred chhhHHHHHHHHHHHHHHHcc
Q psy15078 4 MITNLQQQKQITEQLRREANL 24 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~ 24 (70)
+...+.+++.||..||..+..
T Consensus 8 LaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 8 LAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 556778888888888877643
No 98
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=21.10 E-value=85 Score=20.18 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHHHHHHHH
Q psy15078 5 ITNLQQQKQITEQLRREA 22 (70)
Q Consensus 5 ~~~~~~~k~~ve~Lr~el 22 (70)
.+.++.++++|..|..++
T Consensus 89 ~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 89 TERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344555555555555443
No 99
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=21.02 E-value=1.1e+02 Score=15.87 Aligned_cols=11 Identities=36% Similarity=0.431 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q psy15078 12 KQITEQLRREA 22 (70)
Q Consensus 12 k~~ve~Lr~el 22 (70)
..+||.+|.++
T Consensus 3 ~~~Ie~~R~~L 13 (45)
T PF09388_consen 3 LEEIEELRQEL 13 (45)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44566666554
No 100
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=20.71 E-value=1.6e+02 Score=19.09 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=34.4
Q ss_pred cchhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCc
Q psy15078 3 MMITNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQH 45 (70)
Q Consensus 3 ~~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~ 45 (70)
+..++-...|..+..||..+.-..-.|.--+-.|++.|-+|..
T Consensus 27 ~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG 69 (144)
T cd03568 27 KVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCG 69 (144)
T ss_pred HHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC
Confidence 3445556677788889999988888888889999999999874
No 101
>COG4367 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.64 E-value=2.1e+02 Score=18.05 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=25.2
Q ss_pred chhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q psy15078 4 MITNLQQQKQITEQLRREANLKRINVSQAIQDI 36 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~l 36 (70)
|+=|.+|.+..-+.|+.....-+..++..|.+|
T Consensus 1 MSLn~eq~~~Tk~elqan~el~~LS~~~iA~~L 33 (97)
T COG4367 1 MSLNPEQKQRTKQELQANFELCPLSDEEIATAL 33 (97)
T ss_pred CCCCHHHHHHHHHHHHHhhhhccccHHHHHHHh
Confidence 555677878888888888888888888777663
No 102
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=20.63 E-value=94 Score=20.76 Aligned_cols=39 Identities=15% Similarity=0.287 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHH--------cccchhHHHHHHHHHHHHHhhC
Q psy15078 6 TNLQQQKQITEQLRREA--------NLKRINVSQAIQDIIKYINEHQ 44 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el--------~~~RikvS~a~~~li~yc~~~~ 44 (70)
.++++++..+.+++... ...+-.+.+.+..|.++++++.
T Consensus 75 ~~l~ea~~~i~~i~~~~~~i~~~~~~~~~~~~~~~~~~I~~~v~~~P 121 (199)
T PF10112_consen 75 EILEEAKEKIRRIEKAIKRIRDLEMIEKVSRIEKIARRIFKYVEKDP 121 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence 45556666666665433 3445557788888999998875
No 103
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=20.58 E-value=85 Score=19.81 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=12.9
Q ss_pred chhHHHHHHHHHHHHHhhCcCCc
Q psy15078 26 RINVSQAIQDIIKYINEHQHEDC 48 (70)
Q Consensus 26 RikvS~a~~~li~yc~~~~~~Dp 48 (70)
|+++|+.+++.+.....+-.-.|
T Consensus 1 rirlS~~~~~~L~~Lk~~tgi~~ 23 (113)
T PF08870_consen 1 RIRLSKKAKEQLKKLKRRTGITP 23 (113)
T ss_pred CeecCHHHHHHHHHHHHhcCCCc
Confidence 45556666655555555554455
No 104
>KOG2856|consensus
Probab=20.58 E-value=91 Score=24.51 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhC
Q psy15078 6 TNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQ 44 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~ 44 (70)
.++..++..||.+|.++.+.+.+--+++++|=+|.-.|+
T Consensus 177 eq~kKlqdrveK~k~evqktkekYektl~el~~yt~~Ym 215 (472)
T KOG2856|consen 177 EQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYM 215 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH
Confidence 355667778999999999999999999999988866654
No 105
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.54 E-value=1.3e+02 Score=20.76 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHhhCcCCcccc
Q psy15078 27 INVSQAIQDIIKYINEHQHEDCLLV 51 (70)
Q Consensus 27 ikvS~a~~~li~yc~~~~~~Dpll~ 51 (70)
..+-.+|.-|..|..+-. +||++
T Consensus 70 ~~~~~va~lLK~flReLP--ePLlt 92 (220)
T cd04375 70 QQAYDVADMLKQYFRDLP--EPLLT 92 (220)
T ss_pred ccHHHHHHHHHHHHHhCC--CccCC
Confidence 345668888999999887 88884
No 106
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.25 E-value=2.5e+02 Score=20.37 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCc
Q psy15078 11 QKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDC 48 (70)
Q Consensus 11 ~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dp 48 (70)
.+...+.+..++..-+.++.+|=..|.+|=.+|.--||
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~ 205 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDP 205 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCh
Confidence 45567888899999999999999999999999986665
No 107
>PRK13246 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional
Probab=20.17 E-value=2.3e+02 Score=20.36 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=19.9
Q ss_pred cchhHHHHHHHHHHHHHhhCcCCcc
Q psy15078 25 KRINVSQAIQDIIKYINEHQHEDCL 49 (70)
Q Consensus 25 ~RikvS~a~~~li~yc~~~~~~Dpl 49 (70)
.-+..++....=.+||.+.+++||-
T Consensus 182 ~~~~~~~i~~~Q~~Y~~yqaenDpa 206 (236)
T PRK13246 182 QFLNLEEIKINQIKYDKYSFEKDPA 206 (236)
T ss_pred CccCHHHHHHHHHHHHHHHHHcCcH
Confidence 4456667777788999999999985
No 108
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=20.06 E-value=35 Score=26.58 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=0.0
Q ss_pred CccchhhHHHHHHHHHHHHH-------HHcccchhHHHHHHHHH
Q psy15078 1 MDMMITNLQQQKQITEQLRR-------EANLKRINVSQAIQDII 37 (70)
Q Consensus 1 ~~~~~~~~~~~k~~ve~Lr~-------el~~~RikvS~a~~~li 37 (70)
||..+.+++.++++.+.||. +|..+|-..-.+++-|.
T Consensus 458 ~d~iqEDid~M~~El~~W~~e~~~~~~~l~~e~~~t~~~~~pl~ 501 (539)
T PF10243_consen 458 MDYIQEDIDSMQKELEMWRSEYRQHAEALQEEQSITDEALEPLK 501 (539)
T ss_dssp --------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 45555566666655555554 45555544444444433
Done!