Query psy15078
Match_columns 70
No_of_seqs 108 out of 258
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 19:58:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5w_G G gamma-I, guanine nucl 100.0 1.3E-30 4.3E-35 157.3 5.7 65 5-70 12-77 (77)
2 1got_G GT-gamma; complex (GTP- 99.9 6E-27 2.1E-31 139.9 4.7 59 4-63 15-73 (73)
3 2pbi_A Regulator of G-protein 99.7 1.6E-17 5.5E-22 123.6 3.1 59 4-64 217-275 (424)
4 2pih_A Protein YMCA; regulate 78.8 1.3 4.4E-05 28.2 2.4 24 45-70 121-144 (151)
5 3i00_A HIP-I, huntingtin-inter 75.5 4.6 0.00016 25.2 4.2 35 7-41 16-50 (120)
6 1deb_A APC protein, adenomatou 71.4 3.3 0.00011 22.7 2.5 26 6-31 10-35 (54)
7 2p2e_A Putative Fe-S biosynthe 60.6 3.9 0.00013 25.3 1.6 36 31-69 10-45 (128)
8 3l32_A Phosphoprotein; antipar 60.4 6.3 0.00021 20.9 2.1 15 29-43 30-44 (45)
9 2xdj_A Uncharacterized protein 59.6 17 0.00058 21.2 4.2 40 4-43 25-64 (83)
10 1a93_B MAX protein, coiled coi 54.4 13 0.00044 18.6 2.6 18 5-22 13-30 (34)
11 2yy0_A C-MYC-binding protein; 52.2 11 0.00037 20.2 2.3 21 6-26 19-39 (53)
12 3kfu_G Glutamyl-tRNA(Gln) amid 51.7 22 0.00076 20.6 3.8 32 30-64 31-62 (92)
13 2k48_A Nucleoprotein; viral pr 50.1 16 0.00056 22.5 3.1 33 3-35 32-64 (107)
14 3oja_A Leucine-rich immune mol 48.3 15 0.00052 26.2 3.2 42 2-43 438-479 (487)
15 3cl3_D NF-kappa-B essential mo 44.6 16 0.00056 23.2 2.6 27 5-31 54-80 (130)
16 1urf_A Protein kinase C-like 1 44.3 29 0.001 20.4 3.5 33 14-47 9-41 (81)
17 1ysm_A Calcyclin-binding prote 43.8 20 0.00069 20.6 2.7 25 4-28 1-28 (77)
18 3ffm_A Growth arrest and DNA-d 39.7 12 0.00041 24.8 1.4 20 31-50 141-160 (167)
19 1hjb_A Ccaat/enhancer binding 39.7 48 0.0016 19.4 4.0 39 6-50 43-81 (87)
20 3kpa_A Probable ubiquitin fold 38.3 21 0.0007 23.7 2.4 16 33-48 43-58 (168)
21 2gtv_X CM, chorismate mutase; 37.5 46 0.0016 19.8 3.7 35 4-38 1-46 (104)
22 2js5_A Uncharacterized protein 36.0 25 0.00086 20.1 2.2 32 4-42 1-32 (71)
23 2kk6_A Proto-oncogene tyrosine 35.3 40 0.0014 19.9 3.3 15 32-48 82-96 (116)
24 3ip4_C Aspartyl/glutamyl-tRNA( 35.3 57 0.002 19.0 3.9 34 29-64 28-66 (100)
25 2d9b_A Gtfii-I, general transc 34.1 27 0.00093 21.6 2.3 53 1-64 8-68 (109)
26 2ic9_A Nucleocapsid protein; h 32.0 52 0.0018 19.9 3.3 33 3-35 2-34 (96)
27 2fok_A R.FOKI, FOKI restrictio 31.8 19 0.00065 27.9 1.6 30 27-63 477-506 (579)
28 2wuj_A Septum site-determining 31.6 21 0.00072 19.1 1.4 22 3-24 31-52 (57)
29 1jcd_A Major outer membrane li 31.3 34 0.0012 18.3 2.1 26 4-29 9-34 (52)
30 1hyw_A GPW, head-TO-tail joini 30.8 41 0.0014 18.8 2.6 20 5-24 37-56 (68)
31 3ehu_C Corticoliberin; G prote 30.5 18 0.00061 16.2 0.8 14 15-28 3-16 (21)
32 2keb_A DNA polymerase subunit 30.4 68 0.0023 19.5 3.7 35 14-48 46-80 (101)
33 1fs1_B SKP1, cyclin A/CDK2-ass 30.3 38 0.0013 20.6 2.6 18 30-47 46-63 (141)
34 1p9i_A Cortexillin I/GCN4 hybr 29.6 49 0.0017 15.8 2.3 21 1-21 1-21 (31)
35 2a26_A Calcyclin-binding prote 28.7 39 0.0013 17.9 2.1 18 12-29 13-30 (50)
36 3m91_A Proteasome-associated A 28.0 41 0.0014 17.9 2.1 20 10-29 20-39 (51)
37 1t2k_D Cyclic-AMP-dependent tr 27.8 49 0.0017 17.5 2.5 13 10-22 33-45 (61)
38 1dvk_A PRP18; PRE-mRNA splicin 27.7 27 0.00093 23.1 1.6 21 29-49 151-171 (173)
39 2v4h_A NF-kappa-B essential mo 26.6 1.1E+02 0.0038 18.8 4.2 31 4-36 43-73 (110)
40 3mxz_A Tubulin-specific chaper 26.3 1.1E+02 0.0037 18.7 4.1 37 11-47 54-90 (116)
41 2kg4_A Growth arrest and DNA-d 25.8 34 0.0012 22.4 1.8 20 30-49 137-156 (165)
42 3hme_A Bromodomain-containing 25.6 1.1E+02 0.0036 18.2 4.0 34 22-55 7-40 (123)
43 2d8d_A Aroag, phospho-2-dehydr 25.2 96 0.0033 17.3 3.7 35 4-38 1-38 (90)
44 3cg6_A Growth arrest and DNA-d 24.4 32 0.0011 22.2 1.4 19 30-48 119-137 (146)
45 1v31_A Hypothetical protein RA 24.1 81 0.0028 18.2 3.1 32 18-49 18-49 (93)
46 1vcs_A Vesicle transport throu 23.8 37 0.0013 19.9 1.6 23 4-26 72-94 (102)
47 2li3_A Potassium channel toxin 23.3 41 0.0014 16.1 1.4 16 23-44 11-26 (30)
48 2kt9_A Probable 30S ribosomal 23.1 89 0.003 19.4 3.3 27 16-42 49-82 (116)
49 2ast_A S-phase kinase-associat 23.1 65 0.0022 19.8 2.7 18 30-47 51-68 (159)
50 1vh6_A Flagellar protein FLIS; 23.0 98 0.0033 19.3 3.6 36 7-43 55-90 (145)
51 3ldz_A STAM-1, signal transduc 22.5 1.1E+02 0.0037 18.7 3.6 42 3-44 32-73 (140)
52 1wwj_A Circadian clock protein 22.5 64 0.0022 19.6 2.5 38 25-63 17-54 (105)
53 4fm3_A Uncharacterized hypothe 22.4 69 0.0024 19.2 2.6 18 7-24 79-96 (98)
54 1t4y_A Adaptive-response senso 22.3 48 0.0016 20.2 1.9 25 25-49 21-45 (105)
55 3azd_A Short alpha-tropomyosin 22.1 48 0.0016 16.3 1.6 18 6-23 4-21 (37)
56 1n4k_A Inositol 1,4,5-trisphos 21.8 59 0.002 23.3 2.6 24 26-49 247-272 (381)
57 1nlw_A MAD protein, MAX dimeri 21.6 64 0.0022 18.2 2.3 15 8-22 63-77 (80)
58 1use_A VAsp, vasodilator-stimu 21.5 84 0.0029 16.4 2.5 12 29-40 24-35 (45)
59 2l2l_A Transcriptional repress 21.3 66 0.0023 16.6 2.0 22 8-29 3-24 (43)
60 1uhr_A SWI/SNF related, matrix 21.2 1.1E+02 0.0038 17.6 3.3 31 18-48 18-48 (93)
61 3h4p_a Proteasome subunit beta 20.5 1.8E+02 0.006 18.6 4.8 41 8-49 50-96 (219)
62 4aj5_K Spindle and kinetochore 20.4 64 0.0022 20.3 2.2 31 2-32 78-108 (123)
63 1orj_A Flagellar protein FLIS; 20.0 1.6E+02 0.0055 18.0 4.4 37 7-43 55-92 (130)
No 1
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=99.96 E-value=1.3e-30 Score=157.27 Aligned_cols=65 Identities=40% Similarity=0.642 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCcccccCCCCCCCCCCCCCc-eecC
Q psy15078 5 ITNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKEKTS-CMIL 70 (70)
Q Consensus 5 ~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~~k~~-C~il 70 (70)
++++.++|+.|||||.|++++|||||+|+++|++||++++.+||||+|+|.+ +|||++|++ |+||
T Consensus 12 ss~i~q~rk~VeQLr~Ea~i~RikVSqaaadL~~yc~~~~~~DpLl~Gvp~~-~NPFkeKk~~c~lL 77 (77)
T 3v5w_G 12 TASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPAS-ENPFREKKFFSAIL 77 (77)
T ss_dssp --CHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHSGGGCTTTSCCCGG-GCTTTTC-------
T ss_pred hhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhcCCCCCCcCCCCCC-CCCCCCCcCccccC
Confidence 3569999999999999999999999999999999999999999999999986 599999875 6665
No 2
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=99.93 E-value=6e-27 Score=139.91 Aligned_cols=59 Identities=34% Similarity=0.556 Sum_probs=54.8
Q ss_pred chhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCcccccCCCCCCCCCCC
Q psy15078 4 MITNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKE 63 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~~ 63 (70)
..++++++|++|||||.||+++|+|||+||++|++||++|+++||||+|++.+ +|||++
T Consensus 15 ~~~~~~~lr~~veqLr~el~~~RikVS~aa~~L~~Yce~~~~~DpLl~g~~~~-~NPf~e 73 (73)
T 1got_G 15 DLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPED-KNPFKE 73 (73)
T ss_dssp -CTHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGCHHHHCCCGG-GCTTCC
T ss_pred ccccHHHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcCCCCCCcCCCCCC-CCCCCC
Confidence 34789999999999999999999999999999999999999999999999854 699986
No 3
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.67 E-value=1.6e-17 Score=123.64 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=55.0
Q ss_pred chhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCcccccCCCCCCCCCCCC
Q psy15078 4 MITNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKEK 64 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~~k 64 (70)
+..+.+++|++|+|||.+++++|+|||+|+++|++||+++.++|||++|+.+ +|||++.
T Consensus 217 ~~~~~~~~r~~veqLk~~l~~~rikvS~~~e~l~~y~e~~~~~DPll~g~~~--sNPw~~~ 275 (424)
T 2pbi_A 217 KKQTVTAVRKEIMYYQQALMRSTVKSSVSLGGIVKYSEQFSSNDAIMSGCLP--SNPWITD 275 (424)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHGGGCHHHHCCSS--CCHHHHC
T ss_pred ccccHHHHHHHHHHHHHHhcccceeHHHHHHHHHHHHHhhccCCCccccCCC--CCCCCCC
Confidence 3458899999999999999999999999999999999999999999999875 5999986
No 4
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=78.77 E-value=1.3 Score=28.23 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=2.6
Q ss_pred cCCcccccCCCCCCCCCCCCCceecC
Q psy15078 45 HEDCLLVGFSSQKSNPFKEKTSCMIL 70 (70)
Q Consensus 45 ~~Dpll~g~~~~~~NP~~~k~~C~il 70 (70)
.-+||+.|-.. +.|...+|+|++|
T Consensus 121 tg~p~~~~~~~--~~~~~~~~~~~~~ 144 (151)
T 2pih_A 121 TGGDLLKGETG--SKVKHSNNSCSLL 144 (151)
T ss_dssp TCCC----------------------
T ss_pred CCCCcccccCC--CCCCCCCCcchHH
Confidence 34899988544 4677667899986
No 5
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=75.49 E-value=4.6 Score=25.19 Aligned_cols=35 Identities=3% Similarity=0.073 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH
Q psy15078 7 NLQQQKQITEQLRREANLKRINVSQAIQDIIKYIN 41 (70)
Q Consensus 7 ~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~ 41 (70)
.|++++++|+.||.++..-.+-....+..|...+.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~ 50 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVS 50 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888889999988888777777777777666443
No 6
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=71.39 E-value=3.3 Score=22.68 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHcccchhHHH
Q psy15078 6 TNLQQQKQITEQLRREANLKRINVSQ 31 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~~~RikvS~ 31 (70)
-+++.+|+++..||+||.-+--..|+
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS~~lsk 35 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNSNHLTK 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHH
Confidence 35677888888899998877766665
No 7
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1
Probab=60.57 E-value=3.9 Score=25.32 Aligned_cols=36 Identities=17% Similarity=0.399 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhCcCCcccccCCCCCCCCCCCCCceec
Q psy15078 31 QAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKEKTSCMI 69 (70)
Q Consensus 31 ~a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~~k~~C~i 69 (70)
.|++.|.++..+... +-.| -+. ++.+||...++|+.
T Consensus 10 ~A~~~l~~~l~~~~~-~l~L-r~~-dg~g~y~k~ggCsg 45 (128)
T 2p2e_A 10 DAAKKLQRYTDDSNA-VLLL-DFD-DGVGALSKVGVCSL 45 (128)
T ss_dssp HHHHHHHHHHTCTTE-EEEE-EEC-SSCSGGGGSSCCCC
T ss_pred HHHHHHHHHHhcCCc-eEEE-EEe-CCCCccccCCCCCC
Confidence 466667777776532 3223 233 34699999999986
No 8
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=60.39 E-value=6.3 Score=20.91 Aligned_cols=15 Identities=27% Similarity=0.629 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhh
Q psy15078 29 VSQAIQDIIKYINEH 43 (70)
Q Consensus 29 vS~a~~~li~yc~~~ 43 (70)
=|++.++|+.|+..|
T Consensus 30 WS~~~e~I~sYV~~N 44 (45)
T 3l32_A 30 WSQTVEEIVSYVTVN 44 (45)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 589999999999765
No 9
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=59.63 E-value=17 Score=21.17 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=32.7
Q ss_pred chhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhh
Q psy15078 4 MITNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEH 43 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~ 43 (70)
|...+++++.+|..||-++....-.+.+.-+.-.++..+-
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999988888888888777776653
No 10
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=54.37 E-value=13 Score=18.60 Aligned_cols=18 Identities=11% Similarity=0.237 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHH
Q psy15078 5 ITNLQQQKQITEQLRREA 22 (70)
Q Consensus 5 ~~~~~~~k~~ve~Lr~el 22 (70)
+..++++|+++..|..+.
T Consensus 13 qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 457888888888888764
No 11
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=52.24 E-value=11 Score=20.21 Aligned_cols=21 Identities=0% Similarity=0.028 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHcccc
Q psy15078 6 TNLQQQKQITEQLRREANLKR 26 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~~~R 26 (70)
+.++.++.+++.||.....=.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~ 39 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIV 39 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 566777777777776655433
No 12
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=51.73 E-value=22 Score=20.62 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhCcCCcccccCCCCCCCCCCCC
Q psy15078 30 SQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKEK 64 (70)
Q Consensus 30 S~a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~~k 64 (70)
..-..+|++|+++-..-| ..|++| ..|+|++-
T Consensus 31 ~~~l~~Il~~ve~L~evD--t~~VeP-~~~~lReD 62 (92)
T 3kfu_G 31 LQDLKRILDFVDALPRVE--EGGAEE-ALGRLRED 62 (92)
T ss_dssp HHHHHHHHHHHHTCCCCC--CCCCCC-CCCCCBCS
T ss_pred HHHHHHHHHHHHHHHhcC--CCCCCC-CcCCCCCC
Confidence 456677999999988766 667777 47999984
No 13
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=50.09 E-value=16 Score=22.53 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=28.3
Q ss_pred cchhhHHHHHHHHHHHHHHHcccchhHHHHHHH
Q psy15078 3 MMITNLQQQKQITEQLRREANLKRINVSQAIQD 35 (70)
Q Consensus 3 ~~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~ 35 (70)
+|+++++.+.+++.+.-.+|..-|.|+=.|-..
T Consensus 32 ~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~ 64 (107)
T 2k48_A 32 FTMSTLQELQENITAHEQQLVTARQKLKDAEKA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999998776544
No 14
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.32 E-value=15 Score=26.22 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=32.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhh
Q psy15078 2 DMMITNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEH 43 (70)
Q Consensus 2 ~~~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~ 43 (70)
+.++..+++++++.+.++.++.--=..+.+|-+.+.+-|.+.
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 438 DMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 446677788888888888888887788888888888877654
No 15
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=44.60 E-value=16 Score=23.24 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHcccchhHHH
Q psy15078 5 ITNLQQQKQITEQLRREANLKRINVSQ 31 (70)
Q Consensus 5 ~~~~~~~k~~ve~Lr~el~~~RikvS~ 31 (70)
..++++++.+++.+..++.++|-+++.
T Consensus 54 ~~~~d~L~lQ~esmeaalkmEr~~~~e 80 (130)
T 3cl3_D 54 SVQVDQLRMQGQSVEAALRMERQAASE 80 (130)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999883
No 16
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=44.31 E-value=29 Score=20.37 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=26.5
Q ss_pred HHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCC
Q psy15078 14 ITEQLRREANLKRINVSQAIQDIIKYINEHQHED 47 (70)
Q Consensus 14 ~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~D 47 (70)
.++.|+.+|.++ .||-+.++.+|..+......|
T Consensus 9 rl~~L~kqL~IE-lkVK~GAENmi~~y~~g~~~d 41 (81)
T 1urf_A 9 RVAGLEKQLAIE-LKVKQGAENMIQTYSNGSTKD 41 (81)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCchh
Confidence 478888888887 599999999999887765555
No 17
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=43.84 E-value=20 Score=20.62 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=15.9
Q ss_pred chhhHHHHHH---HHHHHHHHHcccchh
Q psy15078 4 MITNLQQQKQ---ITEQLRREANLKRIN 28 (70)
Q Consensus 4 ~~~~~~~~k~---~ve~Lr~el~~~Rik 28 (70)
|++.+++++. ++..|...+.|+||+
T Consensus 1 Ms~~~eeL~~DLeEl~~Ll~~AkR~rVk 28 (77)
T 1ysm_A 1 MASVLEELQKDLEEVKVLLEKSTRKRLR 28 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTTTHH
T ss_pred CchHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 3333555554 455556788899988
No 18
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=39.69 E-value=12 Score=24.76 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhCcCCccc
Q psy15078 31 QAIQDIIKYINEHQHEDCLL 50 (70)
Q Consensus 31 ~a~~~li~yc~~~~~~Dpll 50 (70)
.|++.|+.||+++...|+.+
T Consensus 141 ~AL~~l~~fCeesr~~~~wv 160 (167)
T 3ffm_A 141 PALEKLSLFCEESRSVNDWV 160 (167)
T ss_dssp HHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhcccCccc
Confidence 57889999999998777655
No 19
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=39.69 E-value=48 Score=19.37 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCccc
Q psy15078 6 TNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLL 50 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dpll 50 (70)
..+..+..+++.||.++.. ..+=...|..+..++. ++++
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~----L~~E~~~Lr~ll~~~p--~~~~ 81 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQ----LSRELSTLRNLFKQLP--EPLL 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCc--HHHh
Confidence 3456677777777777663 3344445666666665 4455
No 20
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=38.25 E-value=21 Score=23.67 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhCcCCc
Q psy15078 33 IQDIIKYINEHQHEDC 48 (70)
Q Consensus 33 ~~~li~yc~~~~~~Dp 48 (70)
-.+||+|++.+...|-
T Consensus 43 y~alI~yv~~nK~~d~ 58 (168)
T 3kpa_A 43 YASLITYVEHNKASDS 58 (168)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccC
Confidence 3569999999987764
No 21
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=37.47 E-value=46 Score=19.84 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=26.8
Q ss_pred chhhHHHHHHHHHHHHHHHc-----------ccchhHHHHHHHHHH
Q psy15078 4 MITNLQQQKQITEQLRREAN-----------LKRINVSQAIQDIIK 38 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~-----------~~RikvS~a~~~li~ 38 (70)
|..+++.+|++|+.+-.++- -+|..+++.++.+..
T Consensus 1 M~~~L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~ 46 (104)
T 2gtv_X 1 MIEKLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKN 46 (104)
T ss_dssp CCTHHHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999988877 467777777666654
No 22
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=35.96 E-value=25 Score=20.14 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=21.5
Q ss_pred chhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh
Q psy15078 4 MITNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINE 42 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~ 42 (70)
|++.++.++++|..|+. +.+++.-+|=+-.|.
T Consensus 1 Mtedi~eLkkevkKL~~-------~A~q~kmdLHDLaEd 32 (71)
T 2js5_A 1 MSEGAEELKAKLKKLNA-------QATALKMDLHDLAED 32 (71)
T ss_dssp CCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHHHHH-------HHHHHHHhHHHHhcc
Confidence 45777888888877775 456666666665553
No 23
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=35.34 E-value=40 Score=19.92 Aligned_cols=15 Identities=13% Similarity=0.178 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhCcCCc
Q psy15078 32 AIQDIIKYINEHQHEDC 48 (70)
Q Consensus 32 a~~~li~yc~~~~~~Dp 48 (70)
.+.+||+|..++. +|
T Consensus 82 sl~eLV~~y~~~~--~~ 96 (116)
T 2kk6_A 82 NIPQLIDHHYTTK--QV 96 (116)
T ss_dssp CHHHHHHHHHHTT--CC
T ss_pred CHHHHHHHHhhCC--CC
Confidence 6788999999875 55
No 24
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=35.29 E-value=57 Score=19.02 Aligned_cols=34 Identities=12% Similarity=0.309 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhCcCC-----cccccCCCCCCCCCCCC
Q psy15078 29 VSQAIQDIIKYINEHQHED-----CLLVGFSSQKSNPFKEK 64 (70)
Q Consensus 29 vS~a~~~li~yc~~~~~~D-----pll~g~~~~~~NP~~~k 64 (70)
...-..+|+.|+++-..-| |+.+..+. .|+|++-
T Consensus 28 ~~~~l~~Il~~ve~L~evDt~~VeP~~~~~~~--~~~lReD 66 (100)
T 3ip4_C 28 MANTLESILDFAKQNDSADTEGVEPTYHVLDL--QNVLRED 66 (100)
T ss_dssp HHHHHHHHHHHHGGGGGSCCTTCCCCSCCSCC--CCCCBCS
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcccccccc--cCCCCCC
Confidence 3456677999999887666 55444333 5888873
No 25
>2d9b_A Gtfii-I, general transcription factor II-I, TFII-I; structural genomics, unknown function, NPPSFA; NMR {Homo sapiens} PDB: 2e3l_A
Probab=34.11 E-value=27 Score=21.59 Aligned_cols=53 Identities=11% Similarity=0.215 Sum_probs=33.6
Q ss_pred CccchhhHHHHHHHHHHHHH-----HHccc---chhHHHHHHHHHHHHHhhCcCCcccccCCCCCCCCCCCC
Q psy15078 1 MDMMITNLQQQKQITEQLRR-----EANLK---RINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKEK 64 (70)
Q Consensus 1 ~~~~~~~~~~~k~~ve~Lr~-----el~~~---RikvS~a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~~k 64 (70)
|.++++.+..+|+.||.|=. .|+.. .++ +-+|..+ +.+-.+.|.|+ .=||+.+
T Consensus 8 ~~~~~~ei~~LRK~VEdlF~~~YgeALG~~~pV~VP-------Y~k~~~~--p~~v~V~GLPe--gi~fR~P 68 (109)
T 2d9b_A 8 MSVDAVEIETLRKTVEDYFCFCYGKALGKSTVVPVP-------YEKMLRD--QSAVVVQGLPE--GVAFKHP 68 (109)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCC-------HHHHHHC--CSSEEEESCCT--TCCSCCT
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCC-------HHHHhcC--CccEEEeeCCC--CCccCCc
Confidence 45677889999999998753 34433 222 2333332 34666899887 3788765
No 26
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=31.96 E-value=52 Score=19.85 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=25.9
Q ss_pred cchhhHHHHHHHHHHHHHHHcccchhHHHHHHH
Q psy15078 3 MMITNLQQQKQITEQLRREANLKRINVSQAIQD 35 (70)
Q Consensus 3 ~~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~ 35 (70)
.|+++++.+..++.+.-.+|..-|.|+=.|-..
T Consensus 2 ~~M~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~ 34 (96)
T 2ic9_A 2 SHMSTLKEVQDNITLHEQRLVTTRQKLKDAERA 34 (96)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999988888766443
No 27
>2fok_A R.FOKI, FOKI restriction endonuclease; nucleic acid recognition, DNA-binding protein, type IIS restriction endonuclease; 2.30A {Planomicrobium okeanokoites} SCOP: a.4.5.12 a.4.5.12 a.4.5.12 c.52.1.12 PDB: 1fok_A*
Probab=31.77 E-value=19 Score=27.95 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHhhCcCCcccccCCCCCCCCCCC
Q psy15078 27 INVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKE 63 (70)
Q Consensus 27 ikvS~a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~~ 63 (70)
++.++ +.+++.|++++...|..+. +|-|++
T Consensus 477 l~i~q-aDeM~RYIeen~~Rde~~n------PnkWWe 506 (579)
T 2fok_A 477 LPIGQ-ADEMQRYVEENQTRNKHIN------PNEWWK 506 (579)
T ss_dssp CCHHH-HHHHHHHHHHHHHCCTTTC------TTCGGG
T ss_pred Cchhh-HHHHHHHHHhccccccccC------chhhhh
Confidence 34443 5678899999999996653 255876
No 28
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=31.58 E-value=21 Score=19.07 Aligned_cols=22 Identities=9% Similarity=0.061 Sum_probs=16.5
Q ss_pred cchhhHHHHHHHHHHHHHHHcc
Q psy15078 3 MMITNLQQQKQITEQLRREANL 24 (70)
Q Consensus 3 ~~~~~~~~~k~~ve~Lr~el~~ 24 (70)
-+..+++.+.++++.|+.++..
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~ 52 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNE 52 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888887764
No 29
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=31.25 E-value=34 Score=18.34 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=17.2
Q ss_pred chhhHHHHHHHHHHHHHHHcccchhH
Q psy15078 4 MITNLQQQKQITEQLRREANLKRINV 29 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~Rikv 29 (70)
.++.++++...|++|..+++--|-.|
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~~v 34 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARSDA 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777888877665544433
No 30
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=30.76 E-value=41 Score=18.81 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHcc
Q psy15078 5 ITNLQQQKQITEQLRREANL 24 (70)
Q Consensus 5 ~~~~~~~k~~ve~Lr~el~~ 24 (70)
.+++.++++.|.+|+.+++.
T Consensus 37 ~asi~~L~~~I~~le~~Lg~ 56 (68)
T 1hyw_A 37 ATSVSDLKKYIAELEVQTGM 56 (68)
T ss_dssp TTTHHHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHHhcc
Confidence 36899999999999999976
No 31
>3ehu_C Corticoliberin; G protein-coupled receptor, corticotropin releasing factor, fold, MBP fusion, extracellular domain, sugar transport; HET: BTB MAL; 1.96A {Escherichia coli}
Probab=30.51 E-value=18 Score=16.23 Aligned_cols=14 Identities=36% Similarity=0.368 Sum_probs=11.0
Q ss_pred HHHHHHHHcccchh
Q psy15078 15 TEQLRREANLKRIN 28 (70)
Q Consensus 15 ve~Lr~el~~~Rik 28 (70)
.|+++.++..+|+-
T Consensus 3 aEq~~qQA~~NRk~ 16 (21)
T 3ehu_C 3 AEQLAQQAHSNRKL 16 (26)
T ss_pred HHHHHHHHHHhHHH
Confidence 47888888888864
No 32
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=30.44 E-value=68 Score=19.50 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=27.7
Q ss_pred HHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCCc
Q psy15078 14 ITEQLRREANLKRINVSQAIQDIIKYINEHQHEDC 48 (70)
Q Consensus 14 ~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~Dp 48 (70)
.++.+..-.-+-|+..++-++..++||......||
T Consensus 46 VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~p 80 (101)
T 2keb_A 46 LIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGL 80 (101)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC
Confidence 46677777778888999999999999997664444
No 33
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=30.25 E-value=38 Score=20.64 Aligned_cols=18 Identities=11% Similarity=0.506 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhCcCC
Q psy15078 30 SQAIQDIIKYINEHQHED 47 (70)
Q Consensus 30 S~a~~~li~yc~~~~~~D 47 (70)
|.+.+.+++||..|..++
T Consensus 46 ~~iL~kVieyc~~h~~~~ 63 (141)
T 1fs1_B 46 AAILKKVIQWCTHHKDDP 63 (141)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhccCC
Confidence 779999999999998543
No 34
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=29.58 E-value=49 Score=15.79 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=13.3
Q ss_pred CccchhhHHHHHHHHHHHHHH
Q psy15078 1 MDMMITNLQQQKQITEQLRRE 21 (70)
Q Consensus 1 ~~~~~~~~~~~k~~ve~Lr~e 21 (70)
||-..+-+..+..++.|||..
T Consensus 1 mdqlnallasleaenkqlkak 21 (31)
T 1p9i_A 1 MDQLNALLASLEAENKQLKAK 21 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 555566667777788888754
No 35
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=28.66 E-value=39 Score=17.87 Aligned_cols=18 Identities=22% Similarity=0.171 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcccchhH
Q psy15078 12 KQITEQLRREANLKRINV 29 (70)
Q Consensus 12 k~~ve~Lr~el~~~Rikv 29 (70)
=.++..|...+.|+||+-
T Consensus 13 L~El~~Ll~~AkR~rVk~ 30 (50)
T 2a26_A 13 LEEVKVLLEKATRKRVRD 30 (50)
T ss_dssp HHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHhccHHHHH
Confidence 356777788899999873
No 36
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=27.98 E-value=41 Score=17.88 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHcccchhH
Q psy15078 10 QQKQITEQLRREANLKRINV 29 (70)
Q Consensus 10 ~~k~~ve~Lr~el~~~Rikv 29 (70)
++...|+.|-..|..-|-++
T Consensus 20 ~L~~rN~rL~~~L~~AR~el 39 (51)
T 3m91_A 20 SLAARNSKLMETLKEARQQL 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333
No 37
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.75 E-value=49 Score=17.52 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy15078 10 QQKQITEQLRREA 22 (70)
Q Consensus 10 ~~k~~ve~Lr~el 22 (70)
.+..++..|+.++
T Consensus 33 ~L~~~n~~L~~~i 45 (61)
T 1t2k_D 33 DLSSLNGQLQSEV 45 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 38
>1dvk_A PRP18; PRE-mRNA splicing factor, X-RAY crystallography, RNA binding protein; 2.15A {Saccharomyces cerevisiae} SCOP: a.72.1.1
Probab=27.67 E-value=27 Score=23.11 Aligned_cols=21 Identities=10% Similarity=0.025 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhhCcCCcc
Q psy15078 29 VSQAIQDIIKYINEHQHEDCL 49 (70)
Q Consensus 29 vS~a~~~li~yc~~~~~~Dpl 49 (70)
-=++...|+.||+.+-+.||-
T Consensus 151 yiqsiKRLmTf~Q~~~p~~~s 171 (173)
T 1dvk_A 151 WITSIKRLITFEEWYTSNHDS 171 (173)
T ss_dssp HHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHhCCCCcc
Confidence 346788899999999877763
No 39
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=26.62 E-value=1.1e+02 Score=18.78 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=20.5
Q ss_pred chhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q psy15078 4 MITNLQQQKQITEQLRREANLKRINVSQAIQDI 36 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~l 36 (70)
++..++.++.++.+++..+ ++|.|-++=.++
T Consensus 43 Kq~~idelk~ei~q~~~~l--E~I~vLkaQv~I 73 (110)
T 2v4h_A 43 KQELIDKLKEEAEQHKIVM--ETVPVLKAQADI 73 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH--THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3456677777777755554 778777765554
No 40
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=26.27 E-value=1.1e+02 Score=18.66 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhCcCC
Q psy15078 11 QKQITEQLRREANLKRINVSQAIQDIIKYINEHQHED 47 (70)
Q Consensus 11 ~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~~~D 47 (70)
++..++.-+.-+---+-++..|..+|..|+..+...|
T Consensus 54 q~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~ 90 (116)
T 3mxz_A 54 QENVLGESRMMIPDCHKRLESALADLKSTLAELEETD 90 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3333333344444456678899999999999875444
No 41
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=25.77 E-value=34 Score=22.35 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhCcCCcc
Q psy15078 30 SQAIQDIIKYINEHQHEDCL 49 (70)
Q Consensus 30 S~a~~~li~yc~~~~~~Dpl 49 (70)
|++...|++||++....++.
T Consensus 137 ~~a~~~l~~~~~e~r~~~~~ 156 (165)
T 2kg4_A 137 DPALSQLICFCRESRYMDQW 156 (165)
T ss_dssp CHHHHHHHHHHHHHHTTTCS
T ss_pred chHHHHHHHHHHHhhhccCC
Confidence 48899999999998755543
No 42
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=25.58 E-value=1.1e+02 Score=18.20 Aligned_cols=34 Identities=6% Similarity=0.195 Sum_probs=25.1
Q ss_pred HcccchhHHHHHHHHHHHHHhhCcCCcccccCCC
Q psy15078 22 ANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSS 55 (70)
Q Consensus 22 l~~~RikvS~a~~~li~yc~~~~~~Dpll~g~~~ 55 (70)
-...+-+..+.+..+++-...+....||..++.+
T Consensus 7 re~~~~p~~~~l~~il~~l~~~~~~~~F~~pv~~ 40 (123)
T 3hme_A 7 AENESTPIQQLLEHFLRQLQRKDPHGFFAFPVTD 40 (123)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCTTCSSSSCCCT
T ss_pred hhccCCHHHHHHHHHHHHHHhCCccHhhcCCCCh
Confidence 3445567788999999999999988999876544
No 43
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=25.22 E-value=96 Score=17.29 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=25.0
Q ss_pred chhhHHHHHHHHHHHHHHH---cccchhHHHHHHHHHH
Q psy15078 4 MITNLQQQKQITEQLRREA---NLKRINVSQAIQDIIK 38 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el---~~~RikvS~a~~~li~ 38 (70)
|..+++.+|.+|+.+-.++ =-+|..+++.++.+..
T Consensus 1 m~~~L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~ 38 (90)
T 2d8d_A 1 MDERIQALRKEVDRVNREILRLLSERGRLVQEIGRLQT 38 (90)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888999998887654 4578888877777664
No 44
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=24.44 E-value=32 Score=22.20 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhCcCCc
Q psy15078 30 SQAIQDIIKYINEHQHEDC 48 (70)
Q Consensus 30 S~a~~~li~yc~~~~~~Dp 48 (70)
|+|..-|.+||+++...+|
T Consensus 119 s~al~~l~~y~~e~~~~~~ 137 (146)
T 3cg6_A 119 DPALEKLSLFCEESRSFND 137 (146)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhccccC
Confidence 7888899999999875544
No 45
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=24.14 E-value=81 Score=18.18 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=25.4
Q ss_pred HHHHHcccchhHHHHHHHHHHHHHhhCcCCcc
Q psy15078 18 LRREANLKRINVSQAIQDIIKYINEHQHEDCL 49 (70)
Q Consensus 18 Lr~el~~~RikvS~a~~~li~yc~~~~~~Dpl 49 (70)
|..-++.....-+++...|-+|+.+|.=.||-
T Consensus 18 La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~ 49 (93)
T 1v31_A 18 LMDVLGIEVETRPRIIAAIWHYVKARKLQNPN 49 (93)
T ss_dssp HHHHSCCSEECSHHHHHHHHHHHHHTTCBCSS
T ss_pred HHHHHCCCccCHHHHHHHHHHHHHHccCcCcc
Confidence 44446777788889999999999999877763
No 46
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=23.78 E-value=37 Score=19.93 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=13.0
Q ss_pred chhhHHHHHHHHHHHHHHHcccc
Q psy15078 4 MITNLQQQKQITEQLRREANLKR 26 (70)
Q Consensus 4 ~~~~~~~~k~~ve~Lr~el~~~R 26 (70)
|.+.+..+|.+++.|+.++..-|
T Consensus 72 ~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 72 YSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666655433
No 47
>2li3_A Potassium channel toxin kappa-KTX3.1; alpha/alpha motif, alpha scorpion toxin, voltage gated potas channel alpha toxin; NMR {Tityus trivittatus} PDB: 2lka_A 2lo7_A
Probab=23.30 E-value=41 Score=16.11 Aligned_cols=16 Identities=31% Similarity=0.200 Sum_probs=10.9
Q ss_pred cccchhHHHHHHHHHHHHHhhC
Q psy15078 23 NLKRINVSQAIQDIIKYINEHQ 44 (70)
Q Consensus 23 ~~~RikvS~a~~~li~yc~~~~ 44 (70)
.--|.|||+ +||-.|-
T Consensus 11 ~~cr~kvsq------~yclknc 26 (30)
T 2li3_A 11 GQCRGKVSQ------DYCLKNC 26 (30)
T ss_dssp HHSCTTHHH------HHHHHHS
T ss_pred hheeeeech------HHHHhcC
Confidence 345889996 6776653
No 48
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=23.09 E-value=89 Score=19.44 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=22.3
Q ss_pred HHHHHHHc-------ccchhHHHHHHHHHHHHHh
Q psy15078 16 EQLRREAN-------LKRINVSQAIQDIIKYINE 42 (70)
Q Consensus 16 e~Lr~el~-------~~RikvS~a~~~li~yc~~ 42 (70)
|+||.+|+ .+||.+-.-+.++|+|=++
T Consensus 49 e~LK~eLEsK~WIse~e~i~lLN~~TeiIN~WQe 82 (116)
T 2kt9_A 49 QQLKDELEAKHWIAEADRINVLNQATEVINFWQD 82 (116)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 56777764 5788899999999999998
No 49
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=23.07 E-value=65 Score=19.83 Aligned_cols=18 Identities=11% Similarity=0.506 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhCcCC
Q psy15078 30 SQAIQDIIKYINEHQHED 47 (70)
Q Consensus 30 S~a~~~li~yc~~~~~~D 47 (70)
|.+.+.+++||..|..++
T Consensus 51 ~~iL~kViey~~~h~~~~ 68 (159)
T 2ast_A 51 AAILKKVIQWCTHHKDDP 68 (159)
T ss_dssp HHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHcCcCC
Confidence 668899999999998543
No 50
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=22.96 E-value=98 Score=19.31 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhh
Q psy15078 7 NLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEH 43 (70)
Q Consensus 7 ~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~ 43 (70)
.+..+...|..|+.-|+.+ -.+++-...|-+||...
T Consensus 55 ~i~KA~~Ii~eL~~sLd~e-geiA~nL~~LY~y~~~~ 90 (145)
T 1vh6_A 55 NLIKAQNIIQELNFTLNRN-IELSASMGAMYDYMYRR 90 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHH
Confidence 4566777888899999999 89999999999998754
No 51
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=22.53 E-value=1.1e+02 Score=18.66 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=31.5
Q ss_pred cchhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhhC
Q psy15078 3 MMITNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQ 44 (70)
Q Consensus 3 ~~~~~~~~~k~~ve~Lr~el~~~RikvS~a~~~li~yc~~~~ 44 (70)
+..++-+..+..+.-+|..+.-..-.+.--+-.|++.|-+|.
T Consensus 32 ~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNc 73 (140)
T 3ldz_A 32 KVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNC 73 (140)
T ss_dssp HHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhc
Confidence 344444566777888888888777777777788999998886
No 52
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A
Probab=22.52 E-value=64 Score=19.60 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=25.8
Q ss_pred cchhHHHHHHHHHHHHHhhCcCCcccccCCCCCCCCCCC
Q psy15078 25 KRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKE 63 (70)
Q Consensus 25 ~RikvS~a~~~li~yc~~~~~~Dpll~g~~~~~~NP~~~ 63 (70)
.+-+...|.+.|.++|+++-..++=+.=+.. ..||..-
T Consensus 17 ~tp~S~~ai~nL~~i~e~~l~~~y~LeVIDv-~~~PelA 54 (105)
T 1wwj_A 17 NTPNSVRALKMLKNILEQEFQGVYALKVIDV-LKNPQLA 54 (105)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSEEEEEEET-TTCCSCC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCeEEEEEEc-ccCHhHH
Confidence 4567788999999999999855544432233 2477654
No 53
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=22.41 E-value=69 Score=19.21 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHcc
Q psy15078 7 NLQQQKQITEQLRREANL 24 (70)
Q Consensus 7 ~~~~~k~~ve~Lr~el~~ 24 (70)
.++.+++-|+.||.|++.
T Consensus 79 ~~~el~~~I~~LrqEl~~ 96 (98)
T 4fm3_A 79 QLGELDKSLKRLRKQLGE 96 (98)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 567788889999988874
No 54
>1t4y_A Adaptive-response sensory-kinase SASA; alpha/beta protein, thioredoxin fold, transferase; NMR {Synechococcus elongatus} SCOP: c.47.1.15 PDB: 1t4z_A
Probab=22.27 E-value=48 Score=20.25 Aligned_cols=25 Identities=8% Similarity=0.049 Sum_probs=19.3
Q ss_pred cchhHHHHHHHHHHHHHhhCcCCcc
Q psy15078 25 KRINVSQAIQDIIKYINEHQHEDCL 49 (70)
Q Consensus 25 ~RikvS~a~~~li~yc~~~~~~Dpl 49 (70)
+|-+..+|.+.|.+||+++-..+++
T Consensus 21 ~tp~S~~ai~nL~~i~e~~l~~~~y 45 (105)
T 1t4y_A 21 TRPLSQHIVQRVKNILAAVEATVPI 45 (105)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCSSCE
T ss_pred CCccHHHHHHHHHHHHHHhccCCce
Confidence 4667888999999999999833333
No 55
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=22.11 E-value=48 Score=16.31 Aligned_cols=18 Identities=11% Similarity=0.268 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHc
Q psy15078 6 TNLQQQKQITEQLRREAN 23 (70)
Q Consensus 6 ~~~~~~k~~ve~Lr~el~ 23 (70)
+.++.+++-+.+|+.+++
T Consensus 4 ~~i~avKkKiq~lq~q~d 21 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNY 21 (37)
T ss_dssp --CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456777888888877764
No 56
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1
Probab=21.85 E-value=59 Score=23.25 Aligned_cols=24 Identities=21% Similarity=0.528 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHHHHhhCcC--Ccc
Q psy15078 26 RINVSQAIQDIIKYINEHQHE--DCL 49 (70)
Q Consensus 26 RikvS~a~~~li~yc~~~~~~--Dpl 49 (70)
|-.+-+++++|+.||.+...+ |+|
T Consensus 247 ~~~v~~~L~dLi~F~~~~~~~~~~~l 272 (381)
T 1n4k_A 247 RRSVTKLLEDLVYFVTGGTNSGQDVL 272 (381)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSSCSG
T ss_pred HHHHHHHHHHHHHHhcCcchhcccch
Confidence 567889999999999987542 776
No 57
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.56 E-value=64 Score=18.21 Aligned_cols=15 Identities=20% Similarity=0.415 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy15078 8 LQQQKQITEQLRREA 22 (70)
Q Consensus 8 ~~~~k~~ve~Lr~el 22 (70)
.++++++++.|+.++
T Consensus 63 ~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 63 IDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555444
No 58
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=21.47 E-value=84 Score=16.44 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q psy15078 29 VSQAIQDIIKYI 40 (70)
Q Consensus 29 vS~a~~~li~yc 40 (70)
++++=++||+-+
T Consensus 24 lqK~K~EIIeAi 35 (45)
T 1use_A 24 LQKVKEEIIEAF 35 (45)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444445555443
No 59
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=21.30 E-value=66 Score=16.64 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHcccchhH
Q psy15078 8 LQQQKQITEQLRREANLKRINV 29 (70)
Q Consensus 8 ~~~~k~~ve~Lr~el~~~Rikv 29 (70)
.++-.+.+.+||.||..+-.|.
T Consensus 3 ~~ere~~i~~LreeLR~EEaKL 24 (43)
T 2l2l_A 3 PEERERMIKQLKEELRLEEAKL 24 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677899999987766554
No 60
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=21.19 E-value=1.1e+02 Score=17.58 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=25.4
Q ss_pred HHHHHcccchhHHHHHHHHHHHHHhhCcCCc
Q psy15078 18 LRREANLKRINVSQAIQDIIKYINEHQHEDC 48 (70)
Q Consensus 18 Lr~el~~~RikvS~a~~~li~yc~~~~~~Dp 48 (70)
|..-++.....-+++...|-+|+..|.=.||
T Consensus 18 La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp 48 (93)
T 1uhr_A 18 LARLLGIHTQTRPVIIQALWQYIKTHKLQDP 48 (93)
T ss_dssp HHHHTCCSEEEHHHHHHHHHHHHHHTTCBCS
T ss_pred HHHHHCCCccCHHHHHHHHHHHHHhccCCCc
Confidence 3444678888889999999999999987776
No 61
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=20.49 E-value=1.8e+02 Score=18.59 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHcc------cchhHHHHHHHHHHHHHhhCcCCcc
Q psy15078 8 LQQQKQITEQLRREANL------KRINVSQAIQDIIKYINEHQHEDCL 49 (70)
Q Consensus 8 ~~~~k~~ve~Lr~el~~------~RikvS~a~~~li~yc~~~~~~Dpl 49 (70)
....+..++.+|.++.. ..+++..++..|-+++.++ ...||
T Consensus 50 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~-~~~P~ 96 (219)
T 3h4p_a 50 VGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSS-RMFPF 96 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHT-TTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHh-cCCCc
Confidence 34445555555555533 3467888888888887776 35665
No 62
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.42 E-value=64 Score=20.28 Aligned_cols=31 Identities=6% Similarity=0.306 Sum_probs=22.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHcccchhHHHH
Q psy15078 2 DMMITNLQQQKQITEQLRREANLKRINVSQA 32 (70)
Q Consensus 2 ~~~~~~~~~~k~~ve~Lr~el~~~RikvS~a 32 (70)
|....++...+..|++|....+.+..+.|+.
T Consensus 78 d~ir~tL~~tm~miQ~LQ~~td~el~pltee 108 (123)
T 4aj5_K 78 SRICATVKKTMNMIQKLQKQTDLELSPLTKE 108 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCChh
Confidence 4456677777778888888888777777764
No 63
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=20.02 E-value=1.6e+02 Score=17.96 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHcccc-hhHHHHHHHHHHHHHhh
Q psy15078 7 NLQQQKQITEQLRREANLKR-INVSQAIQDIIKYINEH 43 (70)
Q Consensus 7 ~~~~~k~~ve~Lr~el~~~R-ikvS~a~~~li~yc~~~ 43 (70)
.+..+...+..|+.-|+.++ -.+++-...|-.||...
T Consensus 55 ~i~KA~~Ii~eL~~sLd~e~GgeiA~nL~~LY~y~~~~ 92 (130)
T 1orj_A 55 NIDRVYDIISALKSFLDHEKGKEIAKNLDTIYTIILNT 92 (130)
T ss_dssp HHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHH
Confidence 45667778888999999987 68999999999999865
Done!