RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15078
         (70 letters)



>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein),
          gamma chain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 68

 Score = 70.1 bits (172), Expect = 7e-19
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 5  ITNLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPFKEK 64
          +T   + K   +QL++E  L+R+ VS+  ++   Y+ E   ED L+ G    K NPFKE 
Sbjct: 9  LTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDK-NPFKEL 67


>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein),
          gamma chain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 54

 Score = 62.0 bits (151), Expect = 1e-15
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 7  NLQQQKQITEQLRREANLKRINVSQAIQDIIKYINEHQHEDCLLVGFSSQKSNPF 61
          ++ Q +++ EQL+ EAN+ RI VS+A  D++ Y   H  ED LL    + + NPF
Sbjct: 1  SIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASE-NPF 54


>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 279

 Score = 25.2 bits (55), Expect = 0.62
 Identities = 4/15 (26%), Positives = 9/15 (60%)

Query: 33 IQDIIKYINEHQHED 47
           ++I++Y+   Q  D
Sbjct: 25 REEIVRYLRSVQLPD 39


>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase
          {Alicyclobacillus acidocaldarius [TaxId: 405212]}
          Length = 271

 Score = 24.2 bits (52), Expect = 1.5
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 33 IQDIIKYINEHQHED 47
          ++ I +Y+   Q ED
Sbjct: 25 MEKIRRYLLHEQRED 39


>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
          Length = 54

 Score = 23.2 bits (50), Expect = 1.6
 Identities = 3/18 (16%), Positives = 8/18 (44%)

Query: 30 SQAIQDIIKYINEHQHED 47
          +  I  I+ +I ++    
Sbjct: 2  AITIHSILDWIEDNLESP 19


>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal
          domain {Escherichia coli [TaxId: 562]}
          Length = 54

 Score = 21.9 bits (47), Expect = 4.2
 Identities = 3/18 (16%), Positives = 10/18 (55%)

Query: 30 SQAIQDIIKYINEHQHED 47
          +  I+D++ ++  H  + 
Sbjct: 2  AGIIRDLLIWLEGHLDQP 19


>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 224

 Score = 22.2 bits (47), Expect = 7.3
 Identities = 6/31 (19%), Positives = 9/31 (29%)

Query: 14  ITEQLRREANLKRINVSQAIQDIIKYINEHQ 44
           IT  L       R+  +         +N H 
Sbjct: 74  ITSNLSVGEVKSRVRKAFDDIPYAVGLNNHM 104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.130    0.356 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 229,462
Number of extensions: 7764
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 19
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)