Query psy15079
Match_columns 74
No_of_seqs 102 out of 1040
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:59:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0489|consensus 99.5 7.6E-16 1.6E-20 104.8 -1.6 27 1-27 198-224 (261)
2 KOG0487|consensus 99.4 2.6E-14 5.6E-19 99.3 0.8 25 1-25 274-298 (308)
3 KOG0492|consensus 99.4 2.9E-14 6.3E-19 94.7 0.2 40 1-40 183-222 (246)
4 KOG0842|consensus 99.4 8.5E-14 1.8E-18 96.7 1.5 32 1-32 192-223 (307)
5 KOG0488|consensus 99.4 1.3E-13 2.9E-18 95.9 1.5 32 1-32 211-242 (309)
6 KOG0848|consensus 99.4 7.4E-14 1.6E-18 95.6 0.2 25 1-25 238-262 (317)
7 KOG0485|consensus 99.3 1.3E-13 2.8E-18 92.3 -0.6 28 1-28 143-170 (268)
8 KOG0850|consensus 99.3 6.7E-13 1.5E-17 89.0 1.1 30 1-30 161-190 (245)
9 KOG0484|consensus 99.3 2.9E-13 6.2E-18 81.8 -0.7 24 1-24 56-79 (125)
10 KOG0494|consensus 99.2 2.4E-12 5.2E-17 88.1 -0.2 26 1-26 180-205 (332)
11 KOG0843|consensus 99.2 3.8E-12 8.2E-17 82.9 -0.1 24 1-24 141-164 (197)
12 KOG0847|consensus 99.0 7.2E-11 1.6E-15 79.4 0.8 28 1-28 206-233 (288)
13 KOG0483|consensus 99.0 3.3E-11 7.2E-16 79.6 -1.4 23 1-23 89-111 (198)
14 KOG2251|consensus 98.8 5.3E-10 1.1E-14 74.8 0.3 24 1-24 76-99 (228)
15 KOG0491|consensus 98.8 4E-10 8.7E-15 72.9 -1.0 25 1-25 139-163 (194)
16 KOG0486|consensus 98.8 1.2E-09 2.7E-14 76.2 1.1 25 1-25 151-175 (351)
17 KOG0844|consensus 98.8 1.6E-09 3.5E-14 75.8 0.8 22 1-22 220-241 (408)
18 KOG0493|consensus 98.6 8E-09 1.7E-13 71.1 0.3 26 1-26 285-310 (342)
19 KOG0490|consensus 98.6 1E-08 2.2E-13 67.2 0.5 22 1-22 99-120 (235)
20 COG5576 Homeodomain-containing 98.5 1.9E-08 4.1E-13 64.4 0.6 28 1-28 90-117 (156)
21 KOG4577|consensus 98.5 1.7E-08 3.6E-13 70.3 0.2 23 1-23 206-228 (383)
22 PF00046 Homeobox: Homeobox do 98.3 2.4E-08 5.1E-13 53.2 -2.5 19 1-19 39-57 (57)
23 cd00086 homeodomain Homeodomai 97.9 5.6E-07 1.2E-11 47.7 -2.1 20 1-20 39-58 (59)
24 KOG0849|consensus 97.8 1.3E-05 2.9E-10 56.9 1.7 21 1-21 215-235 (354)
25 KOG0775|consensus 95.6 0.013 2.7E-07 41.0 2.8 22 1-22 215-236 (304)
26 KOG3802|consensus 95.5 0.0044 9.4E-08 44.9 0.3 21 2-22 334-354 (398)
27 KOG0490|consensus 95.3 0.0059 1.3E-07 39.9 0.4 22 1-22 192-213 (235)
28 KOG1168|consensus 92.2 0.086 1.9E-06 37.4 1.5 20 3-22 350-369 (385)
29 PF05920 Homeobox_KN: Homeobox 85.8 0.041 8.8E-07 27.6 -2.9 15 1-15 25-39 (40)
30 KOG1146|consensus 83.1 0.65 1.4E-05 38.5 1.4 24 1-24 942-965 (1406)
31 KOG3755|consensus 63.7 1.6 3.6E-05 33.8 -0.8 20 3-22 740-759 (769)
32 KOG0773|consensus 54.1 4.7 0.0001 28.2 0.2 20 1-20 281-300 (342)
33 PF11569 Homez: Homeodomain le 50.1 1.4 3.1E-05 23.7 -2.2 13 1-13 37-49 (56)
34 PHA03273 envelope glycoprotein 45.7 7.6 0.00017 29.2 0.2 16 2-18 119-134 (486)
35 KOG4752|consensus 37.7 15 0.00032 16.5 0.4 7 14-20 2-8 (26)
36 PF09292 Neil1-DNA_bind: Endon 34.6 15 0.00033 18.3 0.2 6 7-12 27-32 (39)
37 KOG3623|consensus 32.3 8.1 0.00018 30.9 -1.4 20 2-21 596-615 (1007)
38 PF12934 FTO_CTD: FTO C-termin 30.8 13 0.00028 24.4 -0.5 10 7-16 53-62 (172)
39 PF11516 DUF3220: Protein of u 27.9 7.1 0.00015 22.8 -1.9 10 5-14 32-41 (106)
40 KOG0774|consensus 27.2 20 0.00043 25.4 -0.1 19 2-20 231-249 (334)
41 PF06032 DUF917: Protein of un 20.2 39 0.00084 24.2 0.3 12 3-14 268-279 (353)
No 1
>KOG0489|consensus
Probab=99.52 E-value=7.6e-16 Score=104.80 Aligned_cols=27 Identities=44% Similarity=0.828 Sum_probs=24.3
Q ss_pred CCCCCceecCCCchhhhhhhcccCccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGVSK 27 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~~~ 27 (74)
|+|+|||||||||||||||..+.....
T Consensus 198 LtErQIKIWFQNRRMK~Kk~~k~~~~~ 224 (261)
T KOG0489|consen 198 LTERQIKIWFQNRRMKWKKENKAKSSQ 224 (261)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccc
Confidence 899999999999999999997776665
No 2
>KOG0487|consensus
Probab=99.43 E-value=2.6e-14 Score=99.27 Aligned_cols=25 Identities=48% Similarity=0.712 Sum_probs=21.8
Q ss_pred CCCCCceecCCCchhhhhhhcccCc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGV 25 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~ 25 (74)
|||+||||||||||+|.||.-++..
T Consensus 274 LTeRQVKIWFQNRRMK~KK~~re~r 298 (308)
T KOG0487|consen 274 LTERQVKIWFQNRRMKEKKVNRENR 298 (308)
T ss_pred cchhheeeeehhhhhHHhhhhhhhh
Confidence 8999999999999999999865433
No 3
>KOG0492|consensus
Probab=99.41 E-value=2.9e-14 Score=94.69 Aligned_cols=40 Identities=35% Similarity=0.424 Sum_probs=32.9
Q ss_pred CCCCCceecCCCchhhhhhhcccCccccccccCCCccccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGVSKSKHIVVRPLIDKV 40 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~~~~~~~~~~~~~~~~ 40 (74)
|||+||||||||||||-||.++.+.++.+......+...+
T Consensus 183 LTeTqVKIWFQNRRAKaKRlQeae~Ek~kmaa~~~~~~~~ 222 (246)
T KOG0492|consen 183 LTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKSMLPLPF 222 (246)
T ss_pred hhhhheehhhhhhhHHHHHHHHHHHHHhhhhhccccCCcc
Confidence 7999999999999999999988888887776655544333
No 4
>KOG0842|consensus
Probab=99.39 E-value=8.5e-14 Score=96.67 Aligned_cols=32 Identities=34% Similarity=0.477 Sum_probs=26.1
Q ss_pred CCCCCceecCCCchhhhhhhcccCcccccccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGVSKSKHIV 32 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~~~~~~~~ 32 (74)
||++||||||||||.|.||+++++........
T Consensus 192 LT~TQVKIWFQNrRYK~KR~~~dk~~~~~~~~ 223 (307)
T KOG0842|consen 192 LTPTQVKIWFQNRRYKTKRQQKDKALEALLLA 223 (307)
T ss_pred CCchheeeeeecchhhhhhhhhhhhhhcccCC
Confidence 89999999999999999999776655444433
No 5
>KOG0488|consensus
Probab=99.37 E-value=1.3e-13 Score=95.91 Aligned_cols=32 Identities=56% Similarity=0.807 Sum_probs=26.0
Q ss_pred CCCCCceecCCCchhhhhhhcccCcccccccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGVSKSKHIV 32 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~~~~~~~~ 32 (74)
||++|||+||||||+||||+.+.+........
T Consensus 211 LTdaQVKtWfQNRRtKWKrq~a~g~~~~~~~~ 242 (309)
T KOG0488|consen 211 LTDAQVKTWFQNRRTKWKRQTAEGGELLYQAG 242 (309)
T ss_pred CchhhHHHHHhhhhHHHHHHHHhhhccccccc
Confidence 79999999999999999999777555444433
No 6
>KOG0848|consensus
Probab=99.37 E-value=7.4e-14 Score=95.58 Aligned_cols=25 Identities=44% Similarity=0.627 Sum_probs=22.6
Q ss_pred CCCCCceecCCCchhhhhhhcccCc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGV 25 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~ 25 (74)
|+|+||||||||||||.||+.+.++
T Consensus 238 LsERQVKIWFQNRRAKERK~nKKk~ 262 (317)
T KOG0848|consen 238 LSERQVKIWFQNRRAKERKDNKKKR 262 (317)
T ss_pred ccHhhhhHhhhhhhHHHHHHHHHHH
Confidence 7999999999999999999877664
No 7
>KOG0485|consensus
Probab=99.33 E-value=1.3e-13 Score=92.28 Aligned_cols=28 Identities=43% Similarity=0.834 Sum_probs=24.2
Q ss_pred CCCCCceecCCCchhhhhhhcccCcccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGVSKS 28 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~~~~ 28 (74)
|||+||||||||||.||||+...+.+..
T Consensus 143 LTETQVKIWFQNRRnKwKRq~aad~ea~ 170 (268)
T KOG0485|consen 143 LTETQVKIWFQNRRNKWKRQYAADLEAA 170 (268)
T ss_pred hhhhhhhhhhhhhhHHHHHHHhhhhhhh
Confidence 7999999999999999999976665544
No 8
>KOG0850|consensus
Probab=99.29 E-value=6.7e-13 Score=89.04 Aligned_cols=30 Identities=40% Similarity=0.752 Sum_probs=24.8
Q ss_pred CCCCCceecCCCchhhhhhhcccCcccccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGVSKSKH 30 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~~~~~~ 30 (74)
||.+||||||||||+|.||+.+.+......
T Consensus 161 LTQTQVKIWFQNrRSK~KKl~k~g~~~~e~ 190 (245)
T KOG0850|consen 161 LTQTQVKIWFQNRRSKFKKLKKQGSGPVEG 190 (245)
T ss_pred CchhHhhhhhhhhHHHHHHHHhcCCCcccc
Confidence 789999999999999999998855444433
No 9
>KOG0484|consensus
Probab=99.29 E-value=2.9e-13 Score=81.79 Aligned_cols=24 Identities=46% Similarity=0.837 Sum_probs=21.4
Q ss_pred CCCCCceecCCCchhhhhhhcccC
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEG 24 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~ 24 (74)
|||++|||||||||||.||+++..
T Consensus 56 LTEARVQVWFQNRRAKfRKQEr~a 79 (125)
T KOG0484|consen 56 LTEARVQVWFQNRRAKFRKQERAA 79 (125)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHH
Confidence 799999999999999999996543
No 10
>KOG0494|consensus
Probab=99.19 E-value=2.4e-12 Score=88.10 Aligned_cols=26 Identities=35% Similarity=0.754 Sum_probs=22.8
Q ss_pred CCCCCceecCCCchhhhhhhcccCcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGVS 26 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~~ 26 (74)
|+|.||+||||||||||||.++.-..
T Consensus 180 lpEDRIqVWfQNRRAKWRk~Ek~wg~ 205 (332)
T KOG0494|consen 180 LPEDRIQVWFQNRRAKWRKTEKRWGG 205 (332)
T ss_pred CchhhhhHHhhhhhHHhhhhhhhcCc
Confidence 78999999999999999998776444
No 11
>KOG0843|consensus
Probab=99.17 E-value=3.8e-12 Score=82.95 Aligned_cols=24 Identities=50% Similarity=0.883 Sum_probs=21.6
Q ss_pred CCCCCceecCCCchhhhhhhcccC
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEG 24 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~ 24 (74)
|+|+||||||||||.|.||...++
T Consensus 141 LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 141 LSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CChhHhhhhhhhhhHHHHHHHHHh
Confidence 799999999999999999986553
No 12
>KOG0847|consensus
Probab=99.01 E-value=7.2e-11 Score=79.39 Aligned_cols=28 Identities=54% Similarity=0.932 Sum_probs=22.5
Q ss_pred CCCCCceecCCCchhhhhhhcccCcccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGVSKS 28 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~~~~ 28 (74)
++|.||+|||||||.||||....+..+.
T Consensus 206 mteSqvkVWFQNRRTKWRKkhAaEmasa 233 (288)
T KOG0847|consen 206 MTESQVKVWFQNRRTKWRKKHAAEMASA 233 (288)
T ss_pred ccHHHHHHHHhcchhhhhhhhccchhhc
Confidence 5899999999999999998855544433
No 13
>KOG0483|consensus
Probab=98.99 E-value=3.3e-11 Score=79.58 Aligned_cols=23 Identities=43% Similarity=0.972 Sum_probs=20.0
Q ss_pred CCCCCceecCCCchhhhhhhccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFE 23 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~ 23 (74)
|.++||.||||||||+||..+.+
T Consensus 89 L~pRQVavWFQNRRARwK~kqlE 111 (198)
T KOG0483|consen 89 LQPRQVAVWFQNRRARWKTKQLE 111 (198)
T ss_pred CChhHHHHHHhhccccccchhhh
Confidence 68899999999999999966444
No 14
>KOG2251|consensus
Probab=98.85 E-value=5.3e-10 Score=74.76 Aligned_cols=24 Identities=33% Similarity=0.713 Sum_probs=21.5
Q ss_pred CCCCCceecCCCchhhhhhhcccC
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEG 24 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~ 24 (74)
|+|.+|||||.|||||+|++++..
T Consensus 76 LpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 76 LPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred CchhhhhhhhccccchhhHhhhhh
Confidence 789999999999999999886653
No 15
>KOG0491|consensus
Probab=98.82 E-value=4e-10 Score=72.85 Aligned_cols=25 Identities=44% Similarity=0.728 Sum_probs=21.8
Q ss_pred CCCCCceecCCCchhhhhhhcccCc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGV 25 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~ 25 (74)
|+|+|||.||||||+|.||..+...
T Consensus 139 LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 139 LSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccC
Confidence 7899999999999999999865544
No 16
>KOG0486|consensus
Probab=98.81 E-value=1.2e-09 Score=76.24 Aligned_cols=25 Identities=44% Similarity=0.909 Sum_probs=22.0
Q ss_pred CCCCCceecCCCchhhhhhhcccCc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGV 25 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~ 25 (74)
|||.+|.|||.|||+||||.+....
T Consensus 151 lTE~rvrvwfknrrakwrkrErN~~ 175 (351)
T KOG0486|consen 151 LTEARVRVWFKNRRAKWRKRERNQQ 175 (351)
T ss_pred ccchhhhhhcccchhhhhhhhhhHH
Confidence 7999999999999999999855544
No 17
>KOG0844|consensus
Probab=98.78 E-value=1.6e-09 Score=75.81 Aligned_cols=22 Identities=36% Similarity=0.727 Sum_probs=20.2
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|+|+.|||||||||+|-||+..
T Consensus 220 LPEtTIKVWFQNRRMKDKRQRl 241 (408)
T KOG0844|consen 220 LPETTIKVWFQNRRMKDKRQRL 241 (408)
T ss_pred CCcceeehhhhhchhhhhhhhh
Confidence 7999999999999999999843
No 18
>KOG0493|consensus
Probab=98.61 E-value=8e-09 Score=71.08 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=21.8
Q ss_pred CCCCCceecCCCchhhhhhhcccCcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGVS 26 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~~ 26 (74)
|.|.||||||||.|||.||-......
T Consensus 285 LNEsQIKIWFQNKRAKiKKsTgskn~ 310 (342)
T KOG0493|consen 285 LNESQIKIWFQNKRAKIKKSTGSKNR 310 (342)
T ss_pred cCHHHhhHHhhhhhhhhhhccCCCCc
Confidence 78999999999999999988544433
No 19
>KOG0490|consensus
Probab=98.60 E-value=1e-08 Score=67.20 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=20.2
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|+|.+|+|||||||+||++++.
T Consensus 99 ~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 99 GDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred CCeeeeehhhhhhcHhhhhhhc
Confidence 6899999999999999999864
No 20
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=98.54 E-value=1.9e-08 Score=64.40 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=22.6
Q ss_pred CCCCCceecCCCchhhhhhhcccCcccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGVSKS 28 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~~~~ 28 (74)
|++.-|||||||||+|.|+....+....
T Consensus 90 m~~ksVqIWFQNkR~~~k~~~~~~~~~~ 117 (156)
T COG5576 90 MPPKSVQIWFQNKRAKEKKKRSGKVEQR 117 (156)
T ss_pred CChhhhhhhhchHHHHHHHhcccchhcc
Confidence 6889999999999999998865544443
No 21
>KOG4577|consensus
Probab=98.53 E-value=1.7e-08 Score=70.33 Aligned_cols=23 Identities=35% Similarity=0.617 Sum_probs=19.3
Q ss_pred CCCCCceecCCCchhhhhhhccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFE 23 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~ 23 (74)
|.-+-|||||||||||.||.++.
T Consensus 206 LDMRVVQVWFQNRRAKEKRLKKD 228 (383)
T KOG4577|consen 206 LDMRVVQVWFQNRRAKEKRLKKD 228 (383)
T ss_pred cceeehhhhhhhhhHHHHhhhhh
Confidence 44567999999999999988665
No 22
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=98.33 E-value=2.4e-08 Score=53.24 Aligned_cols=19 Identities=58% Similarity=0.966 Sum_probs=17.3
Q ss_pred CCCCCceecCCCchhhhhh
Q psy15079 1 MTDAQVKTWFQNRRTKWRP 19 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr 19 (74)
|++.+|++||+|||+|.||
T Consensus 39 l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 39 LTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCHHHhHHHhCc
Confidence 6788999999999999986
No 23
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=97.93 E-value=5.6e-07 Score=47.66 Aligned_cols=20 Identities=55% Similarity=0.921 Sum_probs=17.7
Q ss_pred CCCCCceecCCCchhhhhhh
Q psy15079 1 MTDAQVKTWFQNRRTKWRPF 20 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~ 20 (74)
|++.+|+.||+|||++.++.
T Consensus 39 l~~~qV~~WF~nrR~~~~~~ 58 (59)
T cd00086 39 LTERQVKIWFQNRRAKLKRS 58 (59)
T ss_pred cCHHHHHHHHHHHHHHHhcc
Confidence 67899999999999998764
No 24
>KOG0849|consensus
Probab=97.75 E-value=1.3e-05 Score=56.90 Aligned_cols=21 Identities=48% Similarity=1.085 Sum_probs=19.8
Q ss_pred CCCCCceecCCCchhhhhhhc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFS 21 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~ 21 (74)
|+|.+|+|||+|||+||+|+.
T Consensus 215 l~e~riqvwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 215 LPEPRVQVWFQNRRAKWRRQH 235 (354)
T ss_pred CCchHHHHHHhhhhhhhhhcc
Confidence 689999999999999999996
No 25
>KOG0775|consensus
Probab=95.59 E-value=0.013 Score=40.97 Aligned_cols=22 Identities=41% Similarity=0.663 Sum_probs=17.7
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|+-+||--||.|||-+=|-...
T Consensus 215 Lt~tQVsNWFKNRRQRDRa~~a 236 (304)
T KOG0775|consen 215 LTITQVSNWFKNRRQRDRAAAA 236 (304)
T ss_pred Cchhhhhhhhhhhhhhhhhccc
Confidence 6788999999999988774433
No 26
>KOG3802|consensus
Probab=95.48 E-value=0.0044 Score=44.90 Aligned_cols=21 Identities=33% Similarity=0.579 Sum_probs=17.8
Q ss_pred CCCCceecCCCchhhhhhhcc
Q psy15079 2 TDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 2 ~e~qVqiWFQNRRaK~kr~~~ 22 (74)
.-.-|+|||=|||-|.||...
T Consensus 334 eKEVVRVWFCNRRQkeKR~~~ 354 (398)
T KOG3802|consen 334 EKEVVRVWFCNRRQKEKRITP 354 (398)
T ss_pred ccceEEEEeeccccccccCCC
Confidence 345699999999999999865
No 27
>KOG0490|consensus
Probab=95.25 E-value=0.0059 Score=39.85 Aligned_cols=22 Identities=36% Similarity=0.767 Sum_probs=19.0
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|++..|+|||||+|++.++...
T Consensus 192 ~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 192 LSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred CChhhhhhhcccHHHHHHhhcc
Confidence 4678899999999999998755
No 28
>KOG1168|consensus
Probab=92.15 E-value=0.086 Score=37.37 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=16.6
Q ss_pred CCCceecCCCchhhhhhhcc
Q psy15079 3 DAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 3 e~qVqiWFQNRRaK~kr~~~ 22 (74)
-.-|+|||=|.|-|.||...
T Consensus 350 KNVVRVWFCNQRQKQKRm~~ 369 (385)
T KOG1168|consen 350 KNVVRVWFCNQRQKQKRMKR 369 (385)
T ss_pred hceEEEEeeccHHHHHHhhh
Confidence 34699999999999999743
No 29
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=85.79 E-value=0.041 Score=27.63 Aligned_cols=15 Identities=33% Similarity=0.822 Sum_probs=11.9
Q ss_pred CCCCCceecCCCchh
Q psy15079 1 MTDAQVKTWFQNRRT 15 (74)
Q Consensus 1 L~e~qVqiWFQNRRa 15 (74)
|+..||..||-|.|.
T Consensus 25 ls~~Qi~~WF~NaRr 39 (40)
T PF05920_consen 25 LSRKQISNWFINARR 39 (40)
T ss_dssp S-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhHc
Confidence 567899999999875
No 30
>KOG1146|consensus
Probab=83.13 E-value=0.65 Score=38.49 Aligned_cols=24 Identities=29% Similarity=0.661 Sum_probs=19.4
Q ss_pred CCCCCceecCCCchhhhhhhcccC
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEG 24 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~ 24 (74)
|+.+-|+|||||-|+|-++....+
T Consensus 942 ~~~~~i~vw~qna~~~s~k~~~n~ 965 (1406)
T KOG1146|consen 942 LPKRVIQVWFQNARAKSKKAKLNG 965 (1406)
T ss_pred CCcchhHHhhhhhhhhhhhhhhcc
Confidence 455678999999999999886543
No 31
>KOG3755|consensus
Probab=63.70 E-value=1.6 Score=33.81 Aligned_cols=20 Identities=25% Similarity=0.596 Sum_probs=16.7
Q ss_pred CCCceecCCCchhhhhhhcc
Q psy15079 3 DAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 3 e~qVqiWFQNRRaK~kr~~~ 22 (74)
+.-|+.||.|||++.++.+.
T Consensus 740 ~kn~~~~fk~~~ee~~~~k~ 759 (769)
T KOG3755|consen 740 SKNVQFWFKVRREEEKRLKM 759 (769)
T ss_pred hcchHHHHHHHHHHHhhhhc
Confidence 45689999999999998843
No 32
>KOG0773|consensus
Probab=54.13 E-value=4.7 Score=28.22 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=16.2
Q ss_pred CCCCCceecCCCchhhhhhh
Q psy15079 1 MTDAQVKTWFQNRRTKWRPF 20 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~ 20 (74)
|+-.||-.||-|.|.+..+-
T Consensus 281 Ls~~Qv~NWFINaR~R~w~p 300 (342)
T KOG0773|consen 281 LSRPQVSNWFINARVRLWKP 300 (342)
T ss_pred CCcccCCchhhhcccccCCc
Confidence 56778999999998877654
No 33
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=50.15 E-value=1.4 Score=23.74 Aligned_cols=13 Identities=46% Similarity=0.979 Sum_probs=8.5
Q ss_pred CCCCCceecCCCc
Q psy15079 1 MTDAQVKTWFQNR 13 (74)
Q Consensus 1 L~e~qVqiWFQNR 13 (74)
|+..||+-||--|
T Consensus 37 ms~qqVr~WFa~~ 49 (56)
T PF11569_consen 37 MSYQQVRDWFAER 49 (56)
T ss_dssp --HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 5667899999633
No 34
>PHA03273 envelope glycoprotein C; Provisional
Probab=45.71 E-value=7.6 Score=29.18 Aligned_cols=16 Identities=13% Similarity=0.505 Sum_probs=12.7
Q ss_pred CCCCceecCCCchhhhh
Q psy15079 2 TDAQVKTWFQNRRTKWR 18 (74)
Q Consensus 2 ~e~qVqiWFQNRRaK~k 18 (74)
++.+++|||| ||...+
T Consensus 119 ~~~RLeiWf~-~r~rf~ 134 (486)
T PHA03273 119 SEYRLEIYLN-QRTPFS 134 (486)
T ss_pred cceEEEEEEc-cccccc
Confidence 5788999999 777654
No 35
>KOG4752|consensus
Probab=37.69 E-value=15 Score=16.47 Aligned_cols=7 Identities=57% Similarity=1.118 Sum_probs=4.6
Q ss_pred hhhhhhh
Q psy15079 14 RTKWRPF 20 (74)
Q Consensus 14 RaK~kr~ 20 (74)
|+||++.
T Consensus 2 r~kwrkk 8 (26)
T KOG4752|consen 2 RAKWRKK 8 (26)
T ss_pred chHHHHH
Confidence 6788644
No 36
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=34.63 E-value=15 Score=18.26 Aligned_cols=6 Identities=50% Similarity=1.320 Sum_probs=4.5
Q ss_pred eecCCC
Q psy15079 7 KTWFQN 12 (74)
Q Consensus 7 qiWFQN 12 (74)
.||||.
T Consensus 27 TiWFqG 32 (39)
T PF09292_consen 27 TIWFQG 32 (39)
T ss_dssp EEEESS
T ss_pred EEEeeC
Confidence 489985
No 37
>KOG3623|consensus
Probab=32.33 E-value=8.1 Score=30.93 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=16.1
Q ss_pred CCCCceecCCCchhhhhhhc
Q psy15079 2 TDAQVKTWFQNRRTKWRPFS 21 (74)
Q Consensus 2 ~e~qVqiWFQNRRaK~kr~~ 21 (74)
+-+-|+.||++++++.....
T Consensus 596 p~~vvk~wfE~~~a~e~sv~ 615 (1007)
T KOG3623|consen 596 PFAVVKAWFEDEEAEEMSVE 615 (1007)
T ss_pred cHHHHHHHHHhhhhhhhhhc
Confidence 44568999999999987764
No 38
>PF12934 FTO_CTD: FTO C-terminal domain; InterPro: IPR024366 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is found at the C terminus of the FTO protein. The N-terminal domain of this protein is a DNA demethylase, and this domain is found to associate with the N-terminal domain in the crystal structure []. This domain is alpha helical with three helices that form a bundle [].; PDB: 3LFM_A.
Probab=30.76 E-value=13 Score=24.39 Aligned_cols=10 Identities=40% Similarity=0.860 Sum_probs=6.4
Q ss_pred eecCCCchhh
Q psy15079 7 KTWFQNRRTK 16 (74)
Q Consensus 7 qiWFQNRRaK 16 (74)
|.|||++|.+
T Consensus 53 QFWfQG~R~~ 62 (172)
T PF12934_consen 53 QFWFQGSRYA 62 (172)
T ss_dssp HHHHT-S-GG
T ss_pred HHHHccchhh
Confidence 4699999976
No 39
>PF11516 DUF3220: Protein of unknown function (DUF3120); InterPro: IPR021597 This family of proteins with unknown function appears to be restricted to Bordetella. ; PDB: 2JPF_A.
Probab=27.86 E-value=7.1 Score=22.79 Aligned_cols=10 Identities=50% Similarity=0.933 Sum_probs=7.6
Q ss_pred CceecCCCch
Q psy15079 5 QVKTWFQNRR 14 (74)
Q Consensus 5 qVqiWFQNRR 14 (74)
.||||.||--
T Consensus 32 dvkvwmqnle 41 (106)
T PF11516_consen 32 DVKVWMQNLE 41 (106)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 4889999853
No 40
>KOG0774|consensus
Probab=27.19 E-value=20 Score=25.41 Aligned_cols=19 Identities=37% Similarity=0.772 Sum_probs=15.6
Q ss_pred CCCCceecCCCchhhhhhh
Q psy15079 2 TDAQVKTWFQNRRTKWRPF 20 (74)
Q Consensus 2 ~e~qVqiWFQNRRaK~kr~ 20 (74)
+-.||--||.|.|-..||.
T Consensus 231 tvsQvsnwfgnkrIrykK~ 249 (334)
T KOG0774|consen 231 TVSQVSNWFGNKRIRYKKN 249 (334)
T ss_pred eehhhccccccceeehhhh
Confidence 4468888999999988865
No 41
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=20.15 E-value=39 Score=24.24 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=9.3
Q ss_pred CCCceecCCCch
Q psy15079 3 DAQVKTWFQNRR 14 (74)
Q Consensus 3 e~qVqiWFQNRR 14 (74)
+..++|||||=-
T Consensus 268 ~~~~~i~fqNEn 279 (353)
T PF06032_consen 268 GRTLRIEFQNEN 279 (353)
T ss_dssp TEEEEEEESSSE
T ss_pred CCEEEEEEEcCc
Confidence 567899999853
Done!