Query psy15079
Match_columns 74
No_of_seqs 102 out of 1040
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 19:59:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nzz_A Penetratin conjugated G 99.5 2.9E-15 1E-19 74.5 1.1 21 4-24 1-21 (37)
2 2ecb_A Zinc fingers and homeob 99.3 1.1E-13 3.6E-18 80.5 -0.9 25 1-25 50-74 (89)
3 3a01_A Homeodomain-containing 99.2 2.1E-13 7E-18 79.4 -2.3 32 1-32 56-87 (93)
4 1x2m_A LAG1 longevity assuranc 99.2 1.3E-13 4.3E-18 75.9 -3.0 20 1-20 40-59 (64)
5 2l9r_A Homeobox protein NKX-3. 99.2 2.5E-13 8.5E-18 75.6 -2.7 22 1-22 43-64 (69)
6 3a03_A T-cell leukemia homeobo 99.2 5.5E-13 1.9E-17 70.9 -2.4 20 1-20 36-55 (56)
7 2cqx_A LAG1 longevity assuranc 99.2 8.1E-13 2.8E-17 73.8 -2.4 21 1-21 48-68 (72)
8 1ahd_P Antennapedia protein mu 99.2 1.2E-12 3.9E-17 72.2 -1.9 24 1-24 41-64 (68)
9 2dms_A Homeobox protein OTX2; 99.1 1.8E-12 6E-17 73.3 -1.3 24 1-24 46-69 (80)
10 2ecc_A Homeobox and leucine zi 99.1 1.9E-12 6.6E-17 73.3 -1.1 29 1-29 42-70 (76)
11 1uhs_A HOP, homeodomain only p 99.1 1.7E-12 5.8E-17 72.1 -1.6 23 1-23 41-63 (72)
12 3a02_A Homeobox protein arista 99.1 9.5E-13 3.3E-17 70.8 -2.7 22 1-22 38-59 (60)
13 2dmp_A Zinc fingers and homeob 99.1 2.4E-12 8.3E-17 74.4 -1.2 26 1-26 52-77 (89)
14 1ftt_A TTF-1 HD, thyroid trans 99.1 1.7E-12 5.7E-17 71.5 -1.8 24 1-24 41-64 (68)
15 2cue_A Paired box protein PAX6 99.1 9.1E-13 3.1E-17 74.6 -3.2 24 1-24 46-69 (80)
16 1yz8_P Pituitary homeobox 2; D 99.1 1.8E-12 6.2E-17 71.3 -2.0 24 1-24 42-65 (68)
17 2hi3_A Homeodomain-only protei 99.1 2E-12 6.8E-17 72.0 -1.9 22 1-22 42-63 (73)
18 2h1k_A IPF-1, pancreatic and d 99.1 1.6E-12 5.4E-17 70.5 -2.4 21 1-21 42-62 (63)
19 2da5_A Zinc fingers and homeob 99.1 2.2E-12 7.6E-17 72.3 -2.1 23 1-23 46-68 (75)
20 2dmq_A LIM/homeobox protein LH 99.1 3.3E-12 1.1E-16 72.1 -1.4 24 1-24 46-69 (80)
21 2dmt_A Homeobox protein BARH-l 99.1 1.9E-12 6.7E-17 73.2 -2.4 22 1-22 56-77 (80)
22 2l7z_A Homeobox protein HOX-A1 99.1 3.6E-12 1.2E-16 71.0 -1.3 23 1-23 46-68 (73)
23 2vi6_A Homeobox protein nanog; 99.1 2E-12 6.7E-17 69.9 -2.6 20 1-20 42-61 (62)
24 3nau_A Zinc fingers and homeob 99.1 2.2E-12 7.4E-17 71.3 -2.5 20 1-20 43-62 (66)
25 1puf_A HOX-1.7, homeobox prote 99.1 1.9E-12 6.6E-17 72.7 -2.8 23 1-23 52-74 (77)
26 2m0c_A Homeobox protein arista 99.1 3.1E-12 1.1E-16 71.1 -2.0 24 1-24 48-71 (75)
27 2cra_A Homeobox protein HOX-B1 99.1 2.4E-12 8.1E-17 71.1 -2.5 22 1-22 46-67 (70)
28 1b72_A Protein (homeobox prote 99.1 2.8E-12 9.7E-17 74.9 -2.4 23 1-23 73-95 (97)
29 2da1_A Alpha-fetoprotein enhan 99.1 3E-12 1E-16 70.6 -2.3 22 1-22 46-67 (70)
30 1nk2_P Homeobox protein VND; h 99.1 2.9E-12 9.8E-17 72.0 -2.4 24 1-24 48-71 (77)
31 1zq3_P PRD-4, homeotic bicoid 99.1 3.5E-12 1.2E-16 70.2 -2.2 24 1-24 41-64 (68)
32 2ly9_A Zinc fingers and homeob 99.1 3.9E-12 1.3E-16 70.8 -2.2 22 1-22 45-66 (74)
33 2da2_A Alpha-fetoprotein enhan 99.1 3.7E-12 1.3E-16 70.2 -2.4 22 1-22 46-67 (70)
34 2da4_A Hypothetical protein DK 99.1 4.2E-12 1.4E-16 71.7 -2.3 21 1-21 51-71 (80)
35 1ig7_A Homeotic protein MSX-1; 99.1 3.6E-12 1.2E-16 67.9 -2.5 20 1-20 39-58 (58)
36 2da3_A Alpha-fetoprotein enhan 99.1 4.2E-12 1.4E-16 71.5 -2.5 22 1-22 56-77 (80)
37 2dmu_A Homeobox protein goosec 99.1 5.4E-12 1.8E-16 69.6 -2.1 22 1-22 46-67 (70)
38 2dn0_A Zinc fingers and homeob 99.0 4.5E-12 1.5E-16 71.1 -2.7 23 1-23 47-69 (76)
39 2cuf_A FLJ21616 protein; homeo 99.0 1.1E-11 3.7E-16 72.1 -1.4 23 1-23 61-83 (95)
40 2e1o_A Homeobox protein PRH; D 99.0 7.1E-12 2.4E-16 69.2 -2.3 22 1-22 46-67 (70)
41 2k40_A Homeobox expressed in E 99.0 9.1E-12 3.1E-16 68.2 -2.0 23 1-23 40-62 (67)
42 1fjl_A Paired protein; DNA-bin 99.0 6.7E-12 2.3E-16 71.0 -2.6 21 1-21 57-77 (81)
43 2djn_A Homeobox protein DLX-5; 99.0 5.3E-12 1.8E-16 69.7 -3.0 21 1-21 46-66 (70)
44 2e19_A Transcription factor 8; 99.0 5.3E-12 1.8E-16 69.1 -3.2 20 1-20 42-61 (64)
45 1jgg_A Segmentation protein EV 99.0 7.4E-12 2.5E-16 67.2 -2.5 20 1-20 40-59 (60)
46 1bw5_A ISL-1HD, insulin gene e 99.0 7E-12 2.4E-16 68.4 -2.9 21 1-21 42-62 (66)
47 3nar_A ZHX1, zinc fingers and 99.0 1.2E-11 4E-16 72.2 -2.4 21 1-21 64-84 (96)
48 1k61_A Mating-type protein alp 99.0 1.2E-11 4E-16 66.3 -2.6 20 1-20 40-59 (60)
49 1b72_B Protein (PBX1); homeodo 99.0 1.1E-11 3.9E-16 70.8 -3.2 23 1-23 43-65 (87)
50 1puf_B PRE-B-cell leukemia tra 99.0 2.1E-11 7.3E-16 67.7 -2.1 23 1-23 43-65 (73)
51 2dmn_A Homeobox protein TGIF2L 98.9 3.9E-11 1.3E-15 68.4 -1.4 26 1-26 49-74 (83)
52 1x2n_A Homeobox protein pknox1 98.9 3.1E-11 1.1E-15 67.0 -2.0 22 1-22 49-70 (73)
53 2xsd_C POU domain, class 3, tr 98.9 2.9E-11 9.8E-16 76.7 -2.5 22 1-22 138-159 (164)
54 1le8_B Mating-type protein alp 98.9 2.3E-11 7.8E-16 69.3 -2.9 21 1-21 44-64 (83)
55 2da6_A Hepatocyte nuclear fact 98.9 5E-11 1.7E-15 70.8 -2.6 25 1-25 66-90 (102)
56 3k2a_A Homeobox protein MEIS2; 98.8 8.6E-11 3E-15 64.6 -2.6 23 1-23 40-62 (67)
57 1lfb_A Liver transcription fac 98.8 1.2E-10 4.3E-15 68.6 -3.0 23 1-23 69-91 (99)
58 2d5v_A Hepatocyte nuclear fact 98.6 6.3E-10 2.2E-14 70.0 -3.1 23 1-23 136-158 (164)
59 2lk2_A Homeobox protein TGIF1; 98.5 4E-09 1.4E-13 61.2 -2.5 22 1-22 47-68 (89)
60 1wi3_A DNA-binding protein SAT 98.4 7.9E-09 2.7E-13 57.5 -2.8 20 1-20 47-66 (71)
61 2da7_A Zinc finger homeobox pr 98.1 7.6E-08 2.6E-12 53.6 -2.6 16 1-16 44-59 (71)
62 2jpf_A Hypothetical protein; a 24.8 5.6 0.00019 23.0 -1.9 10 5-14 53-62 (127)
63 1pd3_A Nonstructural protein N 22.2 21 0.0007 18.4 0.2 10 11-20 1-10 (58)
64 1y4m_A HERV-FRD_6P24.1 proviru 20.4 10 0.00036 19.4 -1.2 6 10-15 24-29 (53)
65 1etf_B REV peptide; complex (R 20.0 19 0.00065 15.8 -0.2 9 12-20 8-16 (26)
No 1
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=99.50 E-value=2.9e-15 Score=74.48 Aligned_cols=21 Identities=52% Similarity=1.072 Sum_probs=18.5
Q ss_pred CCceecCCCchhhhhhhcccC
Q psy15079 4 AQVKTWFQNRRTKWRPFSFEG 24 (74)
Q Consensus 4 ~qVqiWFQNRRaK~kr~~~~~ 24 (74)
+||+||||||||||||.+.+.
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999986653
No 2
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.31 E-value=1.1e-13 Score=80.53 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=21.6
Q ss_pred CCCCCceecCCCchhhhhhhcccCc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGV 25 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~ 25 (74)
|+|+||+|||||||+|||+.++...
T Consensus 50 Lte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 50 LTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred cChHHCeecccccchHHHHHHHHhh
Confidence 7999999999999999998755444
No 3
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.24 E-value=2.1e-13 Score=79.43 Aligned_cols=32 Identities=59% Similarity=0.907 Sum_probs=22.0
Q ss_pred CCCCCceecCCCchhhhhhhcccCcccccccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGVSKSKHIV 32 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~~~~~~~~ 32 (74)
|+|.+|+|||||||+|||+.............
T Consensus 56 L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~ 87 (93)
T 3a01_A 56 MTDAQVKTWFQNRRTKWRRQTAEEREAERQAA 87 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCC--------
T ss_pred CChhhcccccHhhhhhhhhhhHHHHHHHHHHH
Confidence 78999999999999999999776665554444
No 4
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.24 E-value=1.3e-13 Score=75.94 Aligned_cols=20 Identities=25% Similarity=0.636 Sum_probs=18.7
Q ss_pred CCCCCceecCCCchhhhhhh
Q psy15079 1 MTDAQVKTWFQNRRTKWRPF 20 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~ 20 (74)
|+|+||+|||||||+|+|+.
T Consensus 40 LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 40 WDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHHHHhccCCC
Confidence 79999999999999999975
No 5
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.22 E-value=2.5e-13 Score=75.61 Aligned_cols=22 Identities=50% Similarity=0.801 Sum_probs=20.0
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|+|+||+|||||||+|+||...
T Consensus 43 Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 43 LTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSS
T ss_pred CChhheeecchhhhhhhhhhhh
Confidence 7899999999999999998853
No 6
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.17 E-value=5.5e-13 Score=70.94 Aligned_cols=20 Identities=90% Similarity=1.396 Sum_probs=18.9
Q ss_pred CCCCCceecCCCchhhhhhh
Q psy15079 1 MTDAQVKTWFQNRRTKWRPF 20 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~ 20 (74)
|+|.+|+|||||||+|+||+
T Consensus 36 l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 36 MTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHhhHhhHHhhhhhccc
Confidence 78999999999999999986
No 7
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.16 E-value=8.1e-13 Score=73.84 Aligned_cols=21 Identities=24% Similarity=0.645 Sum_probs=19.3
Q ss_pred CCCCCceecCCCchhhhhhhc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFS 21 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~ 21 (74)
|+|+||+|||||||+|||+..
T Consensus 48 l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 48 WSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCHHHHHHHHHHHHHHHSSCC
T ss_pred CChhhcchhhhhcccCCCCCC
Confidence 789999999999999999763
No 8
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.15 E-value=1.2e-12 Score=72.19 Aligned_cols=24 Identities=46% Similarity=0.893 Sum_probs=21.1
Q ss_pred CCCCCceecCCCchhhhhhhcccC
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEG 24 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~ 24 (74)
|+|.+|+|||||||+|+||..+..
T Consensus 41 l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 41 LTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred cCHhhhhHHhHHHHhHHhHhcccc
Confidence 789999999999999999986543
No 9
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.15 E-value=1.8e-12 Score=73.33 Aligned_cols=24 Identities=33% Similarity=0.722 Sum_probs=21.1
Q ss_pred CCCCCceecCCCchhhhhhhcccC
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEG 24 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~ 24 (74)
|+|.+|+|||||||+|+||..+..
T Consensus 46 l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 46 LPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred cCHHHhhhhhHHHhHHhhHHHHcc
Confidence 789999999999999999985543
No 10
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.15 E-value=1.9e-12 Score=73.32 Aligned_cols=29 Identities=10% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCCCCceecCCCchhhhhhhcccCccccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGVSKSK 29 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~~~~~ 29 (74)
|+|+||+|||||||+|||+....-.....
T Consensus 42 Lte~qIkvWFqNrR~k~Kk~~l~w~~~~~ 70 (76)
T 2ecc_A 42 LPRPEIIQWFGDTRYALKHGQLKWFRDNA 70 (76)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCSSTTCCC
T ss_pred cCHHHhhHHhHhhHHHHHHHHHHHHHHHc
Confidence 79999999999999999988554444433
No 11
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.14 E-value=1.7e-12 Score=72.08 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=20.6
Q ss_pred CCCCCceecCCCchhhhhhhccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFE 23 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~ 23 (74)
|+|.+|+|||||||+|+||..+.
T Consensus 41 l~~~qV~~WFqNRR~k~rk~~~~ 63 (72)
T 1uhs_A 41 LTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCHHHhhHHhHHHHHHHhhhccC
Confidence 78999999999999999998643
No 12
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.13 E-value=9.5e-13 Score=70.76 Aligned_cols=22 Identities=50% Similarity=1.060 Sum_probs=17.4
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|+|.+|+|||||||+|+||..+
T Consensus 38 l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 38 LTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp SCHHHHHHHHHHHHHHHC----
T ss_pred cCHHHHHHHhhhhhhhhHhhcc
Confidence 7899999999999999998753
No 13
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.4e-12 Score=74.38 Aligned_cols=26 Identities=15% Similarity=0.470 Sum_probs=22.1
Q ss_pred CCCCCceecCCCchhhhhhhcccCcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGVS 26 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~~ 26 (74)
|+|.+|+|||||||+|+|+.++....
T Consensus 52 l~~~qV~vWFqNRR~k~r~~~~~~~~ 77 (89)
T 2dmp_A 52 LSRREIDSWFSERRKLRDSMEQAVLD 77 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHTSCSCCCC
T ss_pred CCHHhccHhhHhHHHHHHHHhHhhhc
Confidence 78999999999999999988655443
No 14
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.13 E-value=1.7e-12 Score=71.46 Aligned_cols=24 Identities=42% Similarity=0.637 Sum_probs=21.3
Q ss_pred CCCCCceecCCCchhhhhhhcccC
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEG 24 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~ 24 (74)
|++.+|+|||||||+|+|+..+..
T Consensus 41 l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 41 LTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCHHHhHHHhHHHhhhhhhhhhHh
Confidence 789999999999999999986554
No 15
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.13 E-value=9.1e-13 Score=74.58 Aligned_cols=24 Identities=38% Similarity=0.829 Sum_probs=21.1
Q ss_pred CCCCCceecCCCchhhhhhhcccC
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEG 24 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~ 24 (74)
|+|.+|+|||||||+||||..+..
T Consensus 46 l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 46 LPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHhhHHHHHHHHHHHHHhhhh
Confidence 789999999999999999986543
No 16
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.12 E-value=1.8e-12 Score=71.26 Aligned_cols=24 Identities=46% Similarity=0.843 Sum_probs=21.2
Q ss_pred CCCCCceecCCCchhhhhhhcccC
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEG 24 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~ 24 (74)
|++.+|+|||||||+|||+.++..
T Consensus 42 l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 42 LTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cCHHHHHHHHHHHhHHHHHHhhcc
Confidence 789999999999999999986543
No 17
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.12 E-value=2e-12 Score=72.03 Aligned_cols=22 Identities=32% Similarity=0.761 Sum_probs=20.2
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|+|.+|+|||||||+|+||..+
T Consensus 42 l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 42 LTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHhcc
Confidence 7899999999999999999854
No 18
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.11 E-value=1.6e-12 Score=70.55 Aligned_cols=21 Identities=48% Similarity=1.056 Sum_probs=19.4
Q ss_pred CCCCCceecCCCchhhhhhhc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFS 21 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~ 21 (74)
|++.+|+|||||||+||||.+
T Consensus 42 l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 42 LTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHhhHHHHhhhhhhhhhc
Confidence 789999999999999999873
No 19
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2.2e-12 Score=72.30 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.7
Q ss_pred CCCCCceecCCCchhhhhhhccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFE 23 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~ 23 (74)
|++.+|+|||||||+|+|+.++.
T Consensus 46 l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 46 MTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCHHHhhHhhHHHHHHHHHhhhc
Confidence 78999999999999999998544
No 20
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.3e-12 Score=72.05 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=20.9
Q ss_pred CCCCCceecCCCchhhhhhhcccC
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEG 24 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~ 24 (74)
|++.+|+|||||||+|+||.....
T Consensus 46 l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 46 LTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHhhHccHHHHHHHHHHHHHH
Confidence 789999999999999999985443
No 21
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.9e-12 Score=73.20 Aligned_cols=22 Identities=50% Similarity=0.964 Sum_probs=20.0
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|+|.||+|||||||+||||...
T Consensus 56 L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 56 LSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCHHHeeeccHHHHHHhhcccC
Confidence 7899999999999999999843
No 22
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.10 E-value=3.6e-12 Score=71.04 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.5
Q ss_pred CCCCCceecCCCchhhhhhhccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFE 23 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~ 23 (74)
|+|.+|+|||||||+|+||....
T Consensus 46 l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 46 LSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCHHHHHHHHHHHhHHHHHHhcc
Confidence 78999999999999999998543
No 23
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.09 E-value=2e-12 Score=69.91 Aligned_cols=20 Identities=50% Similarity=0.896 Sum_probs=18.8
Q ss_pred CCCCCceecCCCchhhhhhh
Q psy15079 1 MTDAQVKTWFQNRRTKWRPF 20 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~ 20 (74)
|+|.+|+|||||||+|+||.
T Consensus 42 l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 42 LSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp CCHHHHHHHHHHHHHTCGGG
T ss_pred CCHHHhhHHhHHhhcchhhc
Confidence 78999999999999999986
No 24
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.09 E-value=2.2e-12 Score=71.34 Aligned_cols=20 Identities=20% Similarity=0.607 Sum_probs=18.7
Q ss_pred CCCCCceecCCCchhhhhhh
Q psy15079 1 MTDAQVKTWFQNRRTKWRPF 20 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~ 20 (74)
||+++|+|||||||+|||+.
T Consensus 43 Lt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 43 LARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHhhHhcccchhhhhcc
Confidence 79999999999999999975
No 25
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.09 E-value=1.9e-12 Score=72.74 Aligned_cols=23 Identities=48% Similarity=0.843 Sum_probs=20.5
Q ss_pred CCCCCceecCCCchhhhhhhccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFE 23 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~ 23 (74)
|+|.+|+|||||||+|+|+..+.
T Consensus 52 l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 52 LTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhhhh
Confidence 78999999999999999988543
No 26
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.09 E-value=3.1e-12 Score=71.14 Aligned_cols=24 Identities=54% Similarity=1.006 Sum_probs=21.1
Q ss_pred CCCCCceecCCCchhhhhhhcccC
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEG 24 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~ 24 (74)
|++.+|+|||||||+|+||.++.+
T Consensus 48 l~~~qV~~WFqNrR~k~kk~~r~~ 71 (75)
T 2m0c_A 48 LTEARVQVWFQNRRAKWRKRERFG 71 (75)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCHHHHHHHhHHHHHHHHHHHhhh
Confidence 789999999999999999986543
No 27
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.09 E-value=2.4e-12 Score=71.15 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=19.9
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|+|.+|+|||||||+|+||...
T Consensus 46 l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 46 LSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCHHHhhHhhHhHHHHhcccCC
Confidence 7899999999999999998743
No 28
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.08 E-value=2.8e-12 Score=74.89 Aligned_cols=23 Identities=48% Similarity=0.751 Sum_probs=20.9
Q ss_pred CCCCCceecCCCchhhhhhhccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFE 23 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~ 23 (74)
|+|.+|+|||||||+|+||..+.
T Consensus 73 l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 73 LNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHhHHHHHHHhHHHhHHhcc
Confidence 78999999999999999998654
No 29
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.08 E-value=3e-12 Score=70.60 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.1
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|++.+|+|||||||+|+||..+
T Consensus 46 l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 46 LPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHhhhhhHHHhhhcc
Confidence 7899999999999999999854
No 30
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.08 E-value=2.9e-12 Score=72.03 Aligned_cols=24 Identities=46% Similarity=0.609 Sum_probs=20.8
Q ss_pred CCCCCceecCCCchhhhhhhcccC
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEG 24 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~ 24 (74)
|+|.+|+|||||||+|+|+.....
T Consensus 48 l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 48 LTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhHHhhcchhhhhccc
Confidence 789999999999999999875443
No 31
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.08 E-value=3.5e-12 Score=70.17 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=20.9
Q ss_pred CCCCCceecCCCchhhhhhhcccC
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEG 24 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~ 24 (74)
|++.+|+|||||||+|+|+.....
T Consensus 41 l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 41 LGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHhhHhhHHHHHHHHHHhccc
Confidence 789999999999999999885443
No 32
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.07 E-value=3.9e-12 Score=70.82 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.9
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|++.+|+|||||||+|+||...
T Consensus 45 l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 45 LTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCHHHHHHHHHHHHHHTTTTTC
T ss_pred cCHHHeeeCChhHhHHHHhhCc
Confidence 7899999999999999999854
No 33
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.06 E-value=3.7e-12 Score=70.25 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.9
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|++.+|+|||||||+|+||...
T Consensus 46 l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 46 LPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCHHHhHHhhHhhhHHHhhccc
Confidence 7899999999999999998744
No 34
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=4.2e-12 Score=71.74 Aligned_cols=21 Identities=38% Similarity=0.699 Sum_probs=19.3
Q ss_pred CCCCCceecCCCchhhhhhhc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFS 21 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~ 21 (74)
|+|.+|+|||||||+|+|+..
T Consensus 51 L~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 51 VDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHhhHhHHHHHHHHhhcc
Confidence 789999999999999999863
No 35
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.06 E-value=3.6e-12 Score=67.91 Aligned_cols=20 Identities=55% Similarity=0.973 Sum_probs=18.5
Q ss_pred CCCCCceecCCCchhhhhhh
Q psy15079 1 MTDAQVKTWFQNRRTKWRPF 20 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~ 20 (74)
|+|.+|+|||||||+|+||.
T Consensus 39 l~~~qV~~WFqNrR~k~kr~ 58 (58)
T 1ig7_A 39 LTETQVKIWFQNRRAKAKRL 58 (58)
T ss_dssp CCHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHhhhhhhHhhhhhccC
Confidence 78999999999999999974
No 36
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.05 E-value=4.2e-12 Score=71.48 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.9
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|++.+|+|||||||+|+||...
T Consensus 56 l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 56 LKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCC
T ss_pred cCHHHhHHHhHHHHHhHhhhcc
Confidence 7899999999999999999743
No 37
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=5.4e-12 Score=69.62 Aligned_cols=22 Identities=41% Similarity=0.952 Sum_probs=19.9
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|++.+|+|||||||+|+||...
T Consensus 46 l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 46 LREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHTST
T ss_pred CCHHHeehccccccccccccCC
Confidence 7899999999999999998743
No 38
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=4.5e-12 Score=71.07 Aligned_cols=23 Identities=26% Similarity=0.626 Sum_probs=20.4
Q ss_pred CCCCCceecCCCchhhhhhhccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFE 23 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~ 23 (74)
|++.+|+|||||||+|+||..+.
T Consensus 47 l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 47 LSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CChHHhhHHhHHHhHHHHHhccc
Confidence 78999999999999999997543
No 39
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.03 E-value=1.1e-11 Score=72.15 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.7
Q ss_pred CCCCCceecCCCchhhhhhhccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFE 23 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~ 23 (74)
|++.+|+|||||||+|+||..+.
T Consensus 61 ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 61 VTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHhhc
Confidence 68999999999999999988654
No 40
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.02 E-value=7.1e-12 Score=69.20 Aligned_cols=22 Identities=59% Similarity=1.073 Sum_probs=19.9
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|++.+|+|||||||+|+|+...
T Consensus 46 l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 46 LSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHhhHhhHhhHhhcCCCCC
Confidence 7899999999999999998843
No 41
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.02 E-value=9.1e-12 Score=68.18 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.4
Q ss_pred CCCCCceecCCCchhhhhhhccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFE 23 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~ 23 (74)
|++.+|+|||||||+|+|+....
T Consensus 40 l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 40 LELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCHHHhhHhhHhHHHHHhHhchh
Confidence 78999999999999999988543
No 42
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.02 E-value=6.7e-12 Score=71.04 Aligned_cols=21 Identities=43% Similarity=0.912 Sum_probs=19.5
Q ss_pred CCCCCceecCCCchhhhhhhc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFS 21 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~ 21 (74)
|++.+|+|||||||+|+||+.
T Consensus 57 l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 57 LTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhhhhhhhc
Confidence 789999999999999999874
No 43
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=5.3e-12 Score=69.71 Aligned_cols=21 Identities=48% Similarity=0.844 Sum_probs=19.4
Q ss_pred CCCCCceecCCCchhhhhhhc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFS 21 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~ 21 (74)
|+|.+|+|||||||+|+||..
T Consensus 46 l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 46 LTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHTCSSSS
T ss_pred CCHHHHHHHHHHHhhhhcccC
Confidence 789999999999999999874
No 44
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=5.3e-12 Score=69.10 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=18.2
Q ss_pred CCCCCceecCCCchhhhhhh
Q psy15079 1 MTDAQVKTWFQNRRTKWRPF 20 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~ 20 (74)
|+|++|+|||||||||.++.
T Consensus 42 L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 42 LPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCHHHHHHHHHHHHHTCSCS
T ss_pred cChhhcCcchhcccCCCCCC
Confidence 78999999999999998774
No 45
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.01 E-value=7.4e-12 Score=67.22 Aligned_cols=20 Identities=40% Similarity=0.778 Sum_probs=18.7
Q ss_pred CCCCCceecCCCchhhhhhh
Q psy15079 1 MTDAQVKTWFQNRRTKWRPF 20 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~ 20 (74)
|++.+|+|||||||+|+||+
T Consensus 40 l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 40 LPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp SCHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHhhHHHHhHhhcc
Confidence 78999999999999999986
No 46
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.00 E-value=7e-12 Score=68.45 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=19.4
Q ss_pred CCCCCceecCCCchhhhhhhc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFS 21 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~ 21 (74)
|++.+|+|||||||+|+|+..
T Consensus 42 l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 42 LSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp SCHHHHHHHHHHHHHHCSSCC
T ss_pred cCHHHHHHHhHHHHHHHhHHh
Confidence 789999999999999999874
No 47
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=98.99 E-value=1.2e-11 Score=72.20 Aligned_cols=21 Identities=19% Similarity=0.695 Sum_probs=19.4
Q ss_pred CCCCCceecCCCchhhhhhhc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFS 21 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~ 21 (74)
|++.||+|||||||+|+||..
T Consensus 64 L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 64 LARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp CCHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHeeecchhhhhHhhhhc
Confidence 789999999999999999874
No 48
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=98.98 E-value=1.2e-11 Score=66.34 Aligned_cols=20 Identities=35% Similarity=0.715 Sum_probs=18.7
Q ss_pred CCCCCceecCCCchhhhhhh
Q psy15079 1 MTDAQVKTWFQNRRTKWRPF 20 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~ 20 (74)
|++.||+|||||||+|+||.
T Consensus 40 l~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 40 LSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCHHHHHHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHHcccccC
Confidence 78999999999999999986
No 49
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=98.96 E-value=1.1e-11 Score=70.78 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.4
Q ss_pred CCCCCceecCCCchhhhhhhccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFE 23 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~ 23 (74)
|++.||+|||||||+|+|+....
T Consensus 43 l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 43 ITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGG
T ss_pred cCHHHHHHHHHHHHHHhhhcccc
Confidence 78999999999999999988544
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=98.96 E-value=2.1e-11 Score=67.69 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.4
Q ss_pred CCCCCceecCCCchhhhhhhccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFE 23 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~ 23 (74)
|++.||+|||||||+|+|+....
T Consensus 43 L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 43 ITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTT
T ss_pred cCHHHHHHHHHHHHhhccccccc
Confidence 78999999999999999987544
No 51
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=98.94 E-value=3.9e-11 Score=68.40 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=21.8
Q ss_pred CCCCCceecCCCchhhhhhhcccCcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGVS 26 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~~ 26 (74)
|++.||+|||||||+|+|+....+..
T Consensus 49 Ls~~qV~~WFqNrR~r~k~~~~~~~~ 74 (83)
T 2dmn_A 49 LSLLQISNWFINARRRILPDMLQQRR 74 (83)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHTCCCC
T ss_pred cCHHHhhHHhhhhHhhhcHHHHHhcc
Confidence 78999999999999999987554443
No 52
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.93 E-value=3.1e-11 Score=66.99 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.9
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|++.||+|||||||+|+|+...
T Consensus 49 L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 49 LTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHhHHHHhhcccccc
Confidence 7899999999999999998754
No 53
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=98.93 E-value=2.9e-11 Score=76.65 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=20.1
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|++.+|+|||||||+||||..+
T Consensus 138 L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 138 LEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTBSCC
T ss_pred CChhhhhhhhHHhhHHHhhccC
Confidence 7899999999999999999854
No 54
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=98.92 E-value=2.3e-11 Score=69.28 Aligned_cols=21 Identities=29% Similarity=0.647 Sum_probs=19.4
Q ss_pred CCCCCceecCCCchhhhhhhc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFS 21 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~ 21 (74)
|++.||+|||||||+|+|+..
T Consensus 44 Lt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 44 LSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp CCHHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHcccccHHHHccccccc
Confidence 789999999999999999873
No 55
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=5e-11 Score=70.77 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.1
Q ss_pred CCCCCceecCCCchhhhhhhcccCc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFEGV 25 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~~~ 25 (74)
|+|++|+|||||||+|+|+..+...
T Consensus 66 lte~~V~~WFqNRR~k~kr~~~~~~ 90 (102)
T 2da6_A 66 VTEVRVYNWFANRRKEEAFRQKLAM 90 (102)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeeecchHHHHHHhhHhhh
Confidence 5789999999999999998855443
No 56
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.83 E-value=8.6e-11 Score=64.59 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=19.3
Q ss_pred CCCCCceecCCCchhhhhhhccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFE 23 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~ 23 (74)
|++.||++||||||+|+|+....
T Consensus 40 l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 40 LTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp CCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCHHHhhhhhHHHHHHHhHHHHH
Confidence 78999999999999999987443
No 57
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=98.79 E-value=1.2e-10 Score=68.57 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=18.9
Q ss_pred CCCCCceecCCCchhhhhhhccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFE 23 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~ 23 (74)
|+|++|+|||||||+|.|+..+.
T Consensus 69 lse~qV~vWFqNRR~k~k~k~~~ 91 (99)
T 1lfb_A 69 VTEVRVYNWFANRRKEEAFRHKL 91 (99)
T ss_dssp CCHHHHHHHHHHHHHTTSCCC--
T ss_pred cCcceeeeccHHHHHHHHHhchh
Confidence 68999999999999999876443
No 58
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=98.65 E-value=6.3e-10 Score=69.97 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=19.0
Q ss_pred CCCCCceecCCCchhhhhhhccc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSFE 23 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~~ 23 (74)
|++.||+|||||||+|+|+....
T Consensus 136 L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 136 LELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp CCHHHHHHHHHHHHHTSSCC---
T ss_pred cCHHHhhhcChhhhccccccCCC
Confidence 78999999999999999987443
No 59
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.48 E-value=4e-09 Score=61.17 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.6
Q ss_pred CCCCCceecCCCchhhhhhhcc
Q psy15079 1 MTDAQVKTWFQNRRTKWRPFSF 22 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~~~ 22 (74)
|++.||++||||||+|+++...
T Consensus 47 Lt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 47 LSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhhHHH
Confidence 7899999999999999987643
No 60
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.38 E-value=7.9e-09 Score=57.45 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=17.0
Q ss_pred CCCCCceecCCCchhhhhhh
Q psy15079 1 MTDAQVKTWFQNRRTKWRPF 20 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK~kr~ 20 (74)
|++++|||||||||.-.+..
T Consensus 47 L~~~~IqVWFQNrR~~~~~~ 66 (71)
T 1wi3_A 47 LPKHTIIKFFQNQRYHVKHS 66 (71)
T ss_dssp CCHHHHHHHHHHHHHHCCSS
T ss_pred CCHHHHHHhhccceeeecCC
Confidence 78999999999999876543
No 61
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=7.6e-08 Score=53.61 Aligned_cols=16 Identities=31% Similarity=0.763 Sum_probs=14.3
Q ss_pred CCCCCceecCCCchhh
Q psy15079 1 MTDAQVKTWFQNRRTK 16 (74)
Q Consensus 1 L~e~qVqiWFQNRRaK 16 (74)
|+++.|||||||||+.
T Consensus 44 L~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 44 LPQEFVKEWFEQRKVY 59 (71)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhcccc
Confidence 6788999999999984
No 62
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=24.84 E-value=5.6 Score=23.01 Aligned_cols=10 Identities=50% Similarity=0.933 Sum_probs=7.6
Q ss_pred CceecCCCch
Q psy15079 5 QVKTWFQNRR 14 (74)
Q Consensus 5 qVqiWFQNRR 14 (74)
.||||.||--
T Consensus 53 dvkvwmqnle 62 (127)
T 2jpf_A 53 DVKVWMQNLE 62 (127)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 4889999853
No 63
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=22.16 E-value=21 Score=18.37 Aligned_cols=10 Identities=60% Similarity=0.979 Sum_probs=4.7
Q ss_pred CCchhhhhhh
Q psy15079 11 QNRRTKWRPF 20 (74)
Q Consensus 11 QNRRaK~kr~ 20 (74)
|||..|||.+
T Consensus 1 q~rn~kwReq 10 (58)
T 1pd3_A 1 QNRNGKWREQ 10 (58)
T ss_dssp ----CHHHHH
T ss_pred CCcccHHHHH
Confidence 6888899865
No 64
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=20.38 E-value=10 Score=19.42 Aligned_cols=6 Identities=67% Similarity=0.933 Sum_probs=4.1
Q ss_pred CCCchh
Q psy15079 10 FQNRRT 15 (74)
Q Consensus 10 FQNRRa 15 (74)
+||||+
T Consensus 24 lQNRra 29 (53)
T 1y4m_A 24 LQNRRG 29 (53)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 577775
No 65
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=20.05 E-value=19 Score=15.78 Aligned_cols=9 Identities=56% Similarity=1.143 Sum_probs=6.9
Q ss_pred Cchhhhhhh
Q psy15079 12 NRRTKWRPF 20 (74)
Q Consensus 12 NRRaK~kr~ 20 (74)
|||-.|+..
T Consensus 8 nRRRRWR~R 16 (26)
T 1etf_B 8 NRRRRWRER 16 (26)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 788888755
Done!