RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15079
(74 letters)
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 38.5 bits (90), Expect = 2e-06
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 1 MTDAQVKTWFQNRRTKWRP 19
++ WF+ RR + +P
Sbjct: 33 WDVRSIQRWFRQRRNQEKP 51
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 37.5 bits (87), Expect = 7e-06
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+T+ QVK WFQNRR K +
Sbjct: 52 LTERQVKIWFQNRRMKMK 69
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 37.1 bits (86), Expect = 8e-06
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+ +A+++ WF NRR KWR
Sbjct: 40 LPEARIQVWFSNRRAKWR 57
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 36.8 bits (85), Expect = 9e-06
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+++ Q+ WFQNRR K +
Sbjct: 40 LSERQITIWFQNRRVKEK 57
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 36.7 bits (85), Expect = 1e-05
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+T+ Q+K WFQNRR KW+
Sbjct: 36 LTERQIKIWFQNRRMKWK 53
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 37.3 bits (86), Expect = 1e-05
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+ + QVK WFQNRR K +
Sbjct: 66 LNETQVKIWFQNRRMKQK 83
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 36.3 bits (84), Expect = 1e-05
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 1 MTDAQVKTWFQNRRTKWRP 19
+ +++ WF++RR + +P
Sbjct: 41 WSVRKIQCWFRHRRNQDKP 59
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 36.0 bits (83), Expect = 2e-05
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+++ QVKTWFQNRR KWR
Sbjct: 39 LSERQVKTWFQNRRAKWR 56
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 35.8 bits (82), Expect = 3e-05
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+T +V WF NRR + +
Sbjct: 54 VTSLKVYNWFANRRKEIK 71
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 35.3 bits (81), Expect = 4e-05
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+ ++ +K WFQNRR K +
Sbjct: 38 LPESTIKVWFQNRRMKDK 55
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 35.5 bits (81), Expect = 5e-05
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+T+ +V WF NRR +
Sbjct: 57 VTEVRVYNWFANRRKEEA 74
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 34.9 bits (80), Expect = 6e-05
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+T+ QVK WFQNRR K +
Sbjct: 39 LTETQVKIWFQNRRAKAK 56
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 34.8 bits (80), Expect = 6e-05
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
++ ++ WFQN+R K +
Sbjct: 42 LSPRVIRVWFQNKRCKDK 59
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 34.5 bits (79), Expect = 8e-05
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+ AQVK WF+NRR + +
Sbjct: 40 LGTAQVKIWFKNRRRRHK 57
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 34.5 bits (79), Expect = 9e-05
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+T QVK WFQN R K +
Sbjct: 41 LTPTQVKIWFQNHRYKMK 58
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 34.1 bits (78), Expect = 1e-04
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+T+A+++ WFQNRR + R
Sbjct: 41 LTEARIQVWFQNRRARLR 58
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 33.3 bits (76), Expect = 2e-04
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 1 MTDAQVKTWFQNRRTK 16
+ +AQ+K WFQN R K
Sbjct: 38 LNEAQIKIWFQNARAK 53
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 33.3 bits (76), Expect = 2e-04
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+T QV+ WF N+R + +
Sbjct: 36 ITPLQVRVWFINKRMRSK 53
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 33.4 bits (76), Expect = 3e-04
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+ +K W N +
Sbjct: 60 VRRQVLKIWMHNNKNSGP 77
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 33.2 bits (76), Expect = 3e-04
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
++ Q+K W NRR K +
Sbjct: 40 LSRIQIKNWVSNRRRKEK 57
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 33.4 bits (76), Expect = 3e-04
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+T +QV WF N+R +++
Sbjct: 43 ITVSQVSNWFGNKRIRYK 60
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 33.0 bits (75), Expect = 3e-04
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+T+ Q + WF+ R +WR
Sbjct: 41 LTEEQTQKWFKQRLAEWR 58
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 33.1 bits (75), Expect = 4e-04
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+ + +FQN+R +
Sbjct: 47 LPKHTIIKFFQNQRYHVK 64
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 32.2 bits (73), Expect = 7e-04
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+T+A+V+ WF+NRR KWR
Sbjct: 40 LTEARVRVWFKNRRAKWR 57
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 31.8 bits (72), Expect = 0.001
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+ V+ WF NRR + +
Sbjct: 38 LEKEVVRVWFCNRRQREK 55
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 31.9 bits (72), Expect = 0.001
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+T QVK WFQN R K +
Sbjct: 48 LTPTQVKIWFQNHRYKTK 65
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 31.1 bits (70), Expect = 0.002
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+ V+ WF NRR K +
Sbjct: 47 LEKDVVRVWFCNRRQKGK 64
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 30.5 bits (69), Expect = 0.003
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 1 MTDAQVKTWFQNRRTK 16
+T QV WF N R +
Sbjct: 44 LTLLQVNNWFINARRR 59
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 29.8 bits (67), Expect = 0.004
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 1 MTDAQVKTWFQNRR 14
+ + V +F N R
Sbjct: 37 LELSTVSNFFMNAR 50
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 30.5 bits (68), Expect = 0.004
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
+T ++ WF ++
Sbjct: 43 LTRREIDAWFTEKKKSKA 60
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 29.5 bits (66), Expect = 0.008
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 1 MTDAQVKTWFQNRRTKWR 18
M ++ WF NRR K +
Sbjct: 37 MEKEVIRVWFSNRRQKEK 54
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 29.3 bits (65), Expect = 0.012
Identities = 3/30 (10%), Positives = 10/30 (33%)
Query: 1 MTDAQVKTWFQNRRTKWRPFSFEGVSKSKH 30
+ ++ WF + R + + +
Sbjct: 42 LPRPEIIQWFGDTRYALKHGQLKWFRDNAS 71
>d1k42a_ b.18.1.14 (A:) Carbohydrate binding module from a
thermostable xylanase {Rhodothermus marinus [TaxId:
29549]}
Length = 168
Score = 24.4 bits (52), Expect = 1.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 11 QNRRTKWRPFSFEGVSKSKHIVVRPLI 37
Q T+W+PF+FE + V+R I
Sbjct: 119 QQITTEWQPFTFEFTVSDQETVIRAPI 145
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.134 0.432
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 279,245
Number of extensions: 10088
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 34
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.0 bits)