BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1508
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LW3|A Chain A, Crystal Structure Of Myotubularin-Related Protein 2
Complexed With Phosphate
pdb|1M7R|A Chain A, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
pdb|1M7R|B Chain B, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
Length = 657
Score = 160 bits (405), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/117 (64%), Positives = 91/117 (77%), Gaps = 1/117 (0%)
Query: 4 SPVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQR 63
SPVFLQ ID VWQ+T F AFEFNE+FLITILDHLYSC FGTFL NS+++R +EN+ +R
Sbjct: 480 SPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKR 539
Query: 64 TVSLWSYINSSLDLYKNPLYFP-QLHVLEPIASMRHIKLWKGLYCRWNPSMRAQREL 119
TVSLWSYINS L+ + NPLY HVL P+ASMRH++LW G Y RWNP M+ Q +
Sbjct: 540 TVSLWSYINSQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNPRMKPQEPI 596
>pdb|1ZSQ|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3-Phosphate
pdb|1ZVR|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3,5-Bisphosphate
Length = 528
Score = 156 bits (394), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/113 (66%), Positives = 88/113 (77%), Gaps = 1/113 (0%)
Query: 4 SPVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQR 63
SPVFLQ ID VWQ+T F AFEFNE+FLITILDHLYSC FGTFL NS+++R +EN+ +R
Sbjct: 408 SPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKR 467
Query: 64 TVSLWSYINSSLDLYKNPLYFP-QLHVLEPIASMRHIKLWKGLYCRWNPSMRA 115
TVSLWSYINS L+ + NPLY HVL P+ASMRH++LW G Y RWNP A
Sbjct: 468 TVSLWSYINSQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNPRAAA 520
>pdb|2YF0|A Chain A, Human Myotubularin Related Protein 6 (Mtmr6)
Length = 512
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Query: 4 SPVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQR 63
SPVF Q ++ VW +T F AFEF+E FL+ I +H++SC+FG FL N +ER + +K++
Sbjct: 394 SPVFTQFLECVWHLTEQFPQAFEFSEAFLLQIHEHIHSCQFGNFLGNCQKEREELKLKEK 453
Query: 64 TVSLWSYINSSLDLYKNPLYFPQLH---VLEPIASMRHIKLWKGLY 106
T SLW ++ Y NPLY + H VLEP + K W+ +Y
Sbjct: 454 TYSLWPFLLEDQKKYLNPLYSSESHRFTVLEPNTVSFNFKFWRNMY 499
>pdb|2J4B|A Chain A, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
pdb|2J4B|B Chain B, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
pdb|2J4B|C Chain C, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
pdb|2J4B|D Chain D, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
pdb|2J4B|E Chain E, Crystal Structure Of Encephalitozoon Cuniculi Taf5 N-
Terminal Domain
Length = 138
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 57 QENMKQRTVSLWSYINSSLDLYKN---PLYFP 85
++ M+ VSL ++I SLDL+KN PL +P
Sbjct: 5 KDQMETSYVSLKTWIEDSLDLFKNDLLPLLYP 36
>pdb|1JDY|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1JDY|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|3PMG|A Chain A, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
pdb|3PMG|B Chain B, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
Length = 561
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 2 KGSPVFLQLIDAVWQVTTMFRHAFEFN 28
K P ++++D+V TM R+ F+FN
Sbjct: 179 KFKPFTVEIVDSVEAYATMLRNIFDFN 205
>pdb|1LXT|A Chain A, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1LXT|B Chain B, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1C47|A Chain A, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C47|B Chain B, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C4G|A Chain A, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
pdb|1C4G|B Chain B, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
Length = 561
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 2 KGSPVFLQLIDAVWQVTTMFRHAFEFN 28
K P ++++D+V TM R+ F+FN
Sbjct: 179 KFKPFTVEIVDSVEAYATMLRNIFDFN 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.138 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,645,517
Number of Sequences: 62578
Number of extensions: 131131
Number of successful extensions: 277
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 6
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)