Query psy1508
Match_columns 119
No_of_seqs 110 out of 549
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 20:01:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1508.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1508hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zsq_A Myotubularin-related pr 100.0 2.4E-46 8.3E-51 317.5 8.1 117 2-118 406-523 (528)
2 1lw3_A Myotubularin-related pr 100.0 9.7E-46 3.3E-50 319.5 8.5 117 2-118 478-595 (657)
3 2yf0_A Myotubularin-related pr 100.0 3.6E-45 1.2E-49 309.4 6.8 115 2-116 392-509 (512)
4 1kdl_A YOPD protein; yersinia, 25.3 46 0.0016 16.9 1.9 15 10-24 3-17 (26)
5 2knc_B Integrin beta-3; transm 19.9 76 0.0026 19.9 2.6 11 75-85 68-78 (79)
6 1m8o_B Platele integrin BETA3 19.8 99 0.0034 17.3 2.8 9 76-84 37-45 (47)
7 2jf1_T Integrin beta-2 subunit 18.6 67 0.0023 16.9 1.8 8 77-84 26-33 (35)
8 3g9w_C Integrin beta-1D; prote 16.7 39 0.0013 19.8 0.6 6 80-85 31-36 (52)
9 3vp7_A Vacuolar protein sortin 16.0 63 0.0022 24.3 1.7 12 8-19 122-133 (220)
10 2yqp_A Probable ATP-dependent 15.4 42 0.0014 20.3 0.5 13 39-51 23-35 (60)
No 1
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=100.00 E-value=2.4e-46 Score=317.54 Aligned_cols=117 Identities=64% Similarity=1.099 Sum_probs=107.5
Q ss_pred CcCchHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHhccccccccCcCCHHHHHHHhhCCCCcccccccccccccccCC
Q psy1508 2 KGSPVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQRTVSLWSYINSSLDLYKNP 81 (119)
Q Consensus 2 E~SPiFlqFLDcV~Ql~~q~P~~FEFn~~~L~~L~d~~~s~~fgtFl~n~e~eR~~~~~~~~t~SlW~~~~~~~~~f~N~ 81 (119)
|+||||+|||||||||++|||++|||||.||+.|+||+|||+|||||||||+||.+.++.++|.|||+++.++..+|+||
T Consensus 406 e~SPvFlqFLDcV~Ql~~QfP~~FEFne~~L~~L~~h~ys~~fgTFL~nse~eR~~~~~~~~t~SlW~~~~~~~~~f~Np 485 (528)
T 1zsq_A 406 DRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNP 485 (528)
T ss_dssp TCCCHHHHHHHHHHHHHHHCTTTCSBCHHHHHHHHHHHHHCSSSTTCSSSHHHHHHTTHHHHSCCHHHHHHTCGGGGBCT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCccccCHHHHHHHHHHhcccccCCccccHHHHHHHhccCCCCcChHhhHhhCHHhhcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-CceeccCCcCCceechhhccccCCCCCCCCC
Q psy1508 82 LYFPQL-HVLEPIASMRHIKLWKGLYCRWNPSMRAQRE 118 (119)
Q Consensus 82 ~Y~~~~-~~l~p~~~~~~~~lW~~~y~R~~~~~~~~~~ 118 (119)
+|.|.. .+|+|+++++.+++|.+||+||+++++++++
T Consensus 486 ~Y~~~~~~vl~P~~~~~~l~lW~~~y~r~~~~~~~~~~ 523 (528)
T 1zsq_A 486 LYGSYSNHVLYPVASMRHLELWVGYYIRWNPRAAALEH 523 (528)
T ss_dssp TTTSCSSSCCCCCCSTTTCCCCHHHHTCSCC-------
T ss_pred CcCCCCCcccCCccccCCCeehHHhhCCCCCCCCcccc
Confidence 999974 8999999999999999999999999999875
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=100.00 E-value=9.7e-46 Score=319.52 Aligned_cols=117 Identities=65% Similarity=1.126 Sum_probs=108.4
Q ss_pred CcCchHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHhccccccccCcCCHHHHHHHhhCCCCcccccccccccccccCC
Q psy1508 2 KGSPVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQRTVSLWSYINSSLDLYKNP 81 (119)
Q Consensus 2 E~SPiFlqFLDcV~Ql~~q~P~~FEFn~~~L~~L~d~~~s~~fgtFl~n~e~eR~~~~~~~~t~SlW~~~~~~~~~f~N~ 81 (119)
|+||||+|||||||||++|||++|||||.||+.|+||+|||+|||||||||+||.+.++.++|.|||++++.+...|+||
T Consensus 478 e~SPvFlqFLDCV~QL~~QfP~aFEFne~fL~~L~dh~yS~~FGTFL~Nse~ER~~~~v~~~T~SlWs~i~~~~~~f~Np 557 (657)
T 1lw3_A 478 DRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKRTVSLWSYINSQLEDFTNP 557 (657)
T ss_dssp TCCCHHHHHHHHHHHHHHHCTTTCSBCHHHHHHHHHHHHHCSSSTTCSSSHHHHHHTTHHHHSCCHHHHHTTCTTTTBCT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCccccCHHHHHHHHHHhhhcccCCccccHHHHHHHhccCCCCccHHHHHhhChHhhcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-CceeccCCcCCceechhhccccCCCCCCCCC
Q psy1508 82 LYFPQL-HVLEPIASMRHIKLWKGLYCRWNPSMRAQRE 118 (119)
Q Consensus 82 ~Y~~~~-~~l~p~~~~~~~~lW~~~y~R~~~~~~~~~~ 118 (119)
+|.|.. .+|+|+++++.+++|.+||+||+++++++++
T Consensus 558 lY~~~~~~vl~P~~~~~~l~lW~~~y~R~~~~~~~~~~ 595 (657)
T 1lw3_A 558 LYGSYSNHVLYPVASMRHLELWVGYYIRWNPRMKPQEP 595 (657)
T ss_dssp TTTCCCCCCCCCCCSTTTCCCCHHHHTCCSCC------
T ss_pred CcCCCCCceeccccccCCCEehHHHhCCCCCCCCCccH
Confidence 999974 8999999999999999999999999998864
No 3
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=100.00 E-value=3.6e-45 Score=309.40 Aligned_cols=115 Identities=38% Similarity=0.785 Sum_probs=107.6
Q ss_pred CcCchHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHhccccccccCcCCHHHHHHHhhCCCCcccccccccccccccCC
Q psy1508 2 KGSPVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQRTVSLWSYINSSLDLYKNP 81 (119)
Q Consensus 2 E~SPiFlqFLDcV~Ql~~q~P~~FEFn~~~L~~L~d~~~s~~fgtFl~n~e~eR~~~~~~~~t~SlW~~~~~~~~~f~N~ 81 (119)
|.||||+|||||||||++|||++|||||.||+.|+||+|||+|||||||||+||.+.++.++|.|||+++.++...|+||
T Consensus 392 e~SPvFlqFLDcV~Ql~~QfP~~FEFne~~L~~L~dh~ys~~fgTFL~nse~eR~~~~~~~~t~SlW~~~~~~~~~f~Np 471 (512)
T 2yf0_A 392 EVSPVFTQFLECVWHLTEQFPQAFEFSEAFLLQIHEHIHSCQFGNFLGNCQKEREELKLKEKTYSLWPFLLEDQKKYLNP 471 (512)
T ss_dssp GCCCHHHHHHHHHHHHHHHCTTTCSBCHHHHHHHHHHHTTTCSTTSCSSSHHHHHHTTHHHHSCCSHHHHTTSHHHHBCT
T ss_pred CCCCchHHHHHHHHHHHhhCCCccccCHHHHHHHHHHhccCccCccccCCHHHHHHhCCCcCCccHHHHHHhcHHhhcCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC---CceeccCCcCCceechhhccccCCCCCCC
Q psy1508 82 LYFPQL---HVLEPIASMRHIKLWKGLYCRWNPSMRAQ 116 (119)
Q Consensus 82 ~Y~~~~---~~l~p~~~~~~~~lW~~~y~R~~~~~~~~ 116 (119)
+|+|.. ++|+|+++++++++|.+||+||+++.+.-
T Consensus 472 ~Y~~~~~~~~vl~P~~~~~~l~lW~~~y~r~~~~~~~~ 509 (512)
T 2yf0_A 472 LYSSESHRFTVLEPNTVSFNFKFWRNMYHQFDRTAHHH 509 (512)
T ss_dssp TCCCC---CCCCCCCCSSSSCCCCHHHHHHHCCC----
T ss_pred CcCCCCCCCCeeecccCCCcCeechhhhCCCCCCcccc
Confidence 999953 79999999999999999999999998763
No 4
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.27 E-value=46 Score=16.88 Aligned_cols=15 Identities=7% Similarity=0.290 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhcCCC
Q psy1508 10 LIDAVWQVTTMFRHA 24 (119)
Q Consensus 10 FLDcV~Ql~~q~P~~ 24 (119)
|+.=|.||++||-.+
T Consensus 3 fMkDvlql~qQy~qs 17 (26)
T 1kdl_A 3 FMKDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 677789999998654
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=19.90 E-value=76 Score=19.86 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=7.9
Q ss_pred cccccCCCCCC
Q psy1508 75 LDLYKNPLYFP 85 (119)
Q Consensus 75 ~~~f~N~~Y~~ 85 (119)
...|.||.|..
T Consensus 68 ttt~~nP~~~~ 78 (79)
T 2knc_B 68 TSTFTNITYRG 78 (79)
T ss_dssp SCCSCCCSCCC
T ss_pred ccCccCCCcCC
Confidence 45788888864
No 6
>1m8o_B Platele integrin BETA3 subunit: cytoplasmic domain; ALFA helix, platelet, membrane protein; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2l1c_B* 2h7d_B* 2h7e_B*
Probab=19.79 E-value=99 Score=17.34 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=4.8
Q ss_pred ccccCCCCC
Q psy1508 76 DLYKNPLYF 84 (119)
Q Consensus 76 ~~f~N~~Y~ 84 (119)
..|.||.|.
T Consensus 37 ttf~np~~~ 45 (47)
T 1m8o_B 37 STFTNITYR 45 (47)
T ss_dssp CCCTTSCCC
T ss_pred eeeeCCccc
Confidence 345566554
No 7
>2jf1_T Integrin beta-2 subunit; actin-binding, cell adhesion, transmembrane, acetylation, polymorphism, cytoskeleton, glycoprotein, filamin, complex; 2.2A {Homo sapiens}
Probab=18.55 E-value=67 Score=16.92 Aligned_cols=8 Identities=25% Similarity=0.347 Sum_probs=4.0
Q ss_pred cccCCCCC
Q psy1508 77 LYKNPLYF 84 (119)
Q Consensus 77 ~f~N~~Y~ 84 (119)
.|.||.|.
T Consensus 26 t~~np~~~ 33 (35)
T 2jf1_T 26 TVMNPKFA 33 (35)
T ss_pred eeeCCccc
Confidence 45555554
No 8
>3g9w_C Integrin beta-1D; protein-protein complex, PH domain superfold, PTB domain, HE bundle, intrinsically unstructured, cell adhesion; 2.17A {Homo sapiens} PDB: 1kup_B 1kuz_B
Probab=16.74 E-value=39 Score=19.76 Aligned_cols=6 Identities=50% Similarity=1.060 Sum_probs=3.0
Q ss_pred CCCCCC
Q psy1508 80 NPLYFP 85 (119)
Q Consensus 80 N~~Y~~ 85 (119)
||+|.+
T Consensus 31 NPLYk~ 36 (52)
T 3g9w_C 31 NPIYKS 36 (52)
T ss_dssp CTTCCC
T ss_pred CCcccC
Confidence 555543
No 9
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=16.04 E-value=63 Score=24.29 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHH
Q psy1508 8 LQLIDAVWQVTT 19 (119)
Q Consensus 8 lqFLDcV~Ql~~ 19 (119)
.-|||||-|+..
T Consensus 122 vafL~cl~ql~~ 133 (220)
T 3vp7_A 122 ETTLEIISEITR 133 (220)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 359999999964
No 10
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.43 E-value=42 Score=20.34 Aligned_cols=13 Identities=15% Similarity=0.629 Sum_probs=11.1
Q ss_pred hccccccccCcCC
Q psy1508 39 LYSCRFGTFLFNS 51 (119)
Q Consensus 39 ~~s~~fgtFl~n~ 51 (119)
+.+++||++++|-
T Consensus 23 vvCGryGeYICd~ 35 (60)
T 2yqp_A 23 VVCGRYGEYICDK 35 (60)
T ss_dssp SSSSSCCSEECSS
T ss_pred EEecCccceeecC
Confidence 5789999999984
Done!