RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1508
         (119 letters)



>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein
           ArcB; Provisional.
          Length = 779

 Score = 29.1 bits (66), Expect = 0.55
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 52  DRERNQENMKQRTVSLWSYINSSLDL--YKN 80
           +RE  Q  ++Q++  L S++++S DL  Y+N
Sbjct: 142 EREETQIELEQQSSLLRSFLDASPDLVYYRN 172


>gnl|CDD|221647 pfam12578, 3-PAP, Myotubularin-associated protein.  This domain
           family is found in eukaryotes, and is typically between
           115 and 138 amino acids in length. Myotubularin is a
           dual-specific phosphatase that dephosphorylates
           phosphatidylinositol 3-phosphate and
           phosphatidylinositol (3,5)-bisphosphate. 3-PAP is a
           catalytically inactive member of the myotubularin gene
           family, which coprecipitates lipid phosphatidylinositol
           3-phosphate-3-phosphatase activity from lysates of human
           platelets.
          Length = 93

 Score = 27.0 bits (60), Expect = 1.1
 Identities = 9/35 (25%), Positives = 11/35 (31%)

Query: 77  LYKNPLYFPQLHVLEPIASMRHIKLWKGLYCRWNP 111
           L           +L P      + LW   Y RW P
Sbjct: 15  LSATWSSRDLHQLLLPQQLGLDLSLWSQCYLRWIP 49


>gnl|CDD|215425 PLN02791, PLN02791, Nudix hydrolase homolog.
          Length = 770

 Score = 27.1 bits (60), Expect = 2.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 47  FLFNSDRERNQENMKQRTVSLWSYIN 72
            LF+   +R + N + R+++L   +N
Sbjct: 177 QLFSIIEKRYKVNTEARSLTLQKQLN 202


>gnl|CDD|177474 PHA02692, PHA02692, hypothetical protein; Provisional.
          Length = 70

 Score = 25.4 bits (55), Expect = 3.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 36 LDHLYSCRFGTFLFNSDRE 54
          +D LY+  FG+FL NSD +
Sbjct: 1  MDKLYAGVFGSFLSNSDED 19


>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
           Provisional.
          Length = 606

 Score = 25.9 bits (57), Expect = 6.4
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 9/36 (25%)

Query: 47  FLFNSDRERNQENMKQRTVSLWSYINSSLDLYKNPL 82
           FL  +D+ER+          + S +NSSL+L+ NPL
Sbjct: 320 FLQKADKERS---------GVISTMNSSLELWANPL 346


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.328    0.138    0.453 

Gapped
Lambda     K      H
   0.267   0.0730    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,059,053
Number of extensions: 497002
Number of successful extensions: 475
Number of sequences better than 10.0: 1
Number of HSP's gapped: 475
Number of HSP's successfully gapped: 13
Length of query: 119
Length of database: 10,937,602
Length adjustment: 82
Effective length of query: 37
Effective length of database: 7,300,574
Effective search space: 270121238
Effective search space used: 270121238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.2 bits)