RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1508
(119 letters)
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex,
hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8
c.45.1.3 PDB: 1zvr_A*
Length = 528
Score = 139 bits (351), Expect = 2e-40
Identities = 75/116 (64%), Positives = 88/116 (75%), Gaps = 1/116 (0%)
Query: 4 SPVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQR 63
SPVFLQ ID VWQ+T F AFEFNE+FLITILDHLYSC FGTFL NS+++R +EN+ +R
Sbjct: 408 SPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKR 467
Query: 64 TVSLWSYINSSLDLYKNPLYFPQL-HVLEPIASMRHIKLWKGLYCRWNPSMRAQRE 118
TVSLWSYINS L+ + NPLY HVL P+ASMRH++LW G Y RWNP A
Sbjct: 468 TVSLWSYINSQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNPRAAALEH 523
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex,
hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3
PDB: 1m7r_A
Length = 657
Score = 140 bits (352), Expect = 3e-40
Identities = 76/117 (64%), Positives = 91/117 (77%), Gaps = 1/117 (0%)
Query: 4 SPVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQR 63
SPVFLQ ID VWQ+T F AFEFNE+FLITILDHLYSC FGTFL NS+++R +EN+ +R
Sbjct: 480 SPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKR 539
Query: 64 TVSLWSYINSSLDLYKNPLYFPQL-HVLEPIASMRHIKLWKGLYCRWNPSMRAQREL 119
TVSLWSYINS L+ + NPLY HVL P+ASMRH++LW G Y RWNP M+ Q +
Sbjct: 540 TVSLWSYINSQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNPRMKPQEPI 596
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Length = 512
Score = 134 bits (338), Expect = 1e-38
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 3/116 (2%)
Query: 4 SPVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQR 63
SPVF Q ++ VW +T F AFEF+E FL+ I +H++SC+FG FL N +ER + +K++
Sbjct: 394 SPVFTQFLECVWHLTEQFPQAFEFSEAFLLQIHEHIHSCQFGNFLGNCQKEREELKLKEK 453
Query: 64 TVSLWSYINSSLDLYKNPLYFPQLH---VLEPIASMRHIKLWKGLYCRWNPSMRAQ 116
T SLW ++ Y NPLY + H VLEP + K W+ +Y +++ +
Sbjct: 454 TYSLWPFLLEDQKKYLNPLYSSESHRFTVLEPNTVSFNFKFWRNMYHQFDRTAHHH 509
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.013
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 29 EHFLITILDHLYSCRFGTFLFNSDRERNQENMKQRTVSLWSYINSSLDLYKNPLYFPQLH 88
+ F+ +L Y FL + + +Q ++ YI LY + F + +
Sbjct: 80 QKFVEEVLRINYK-----FLMSPIKTEQ----RQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 89 V--LEPIASMR 97
V L+P +R
Sbjct: 131 VSRLQPYLKLR 141
Score = 25.2 bits (54), Expect = 7.6
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 32 LITILDHLYSCRFGTFLFNSDRERNQENMKQRTVSLWSYINSSLDLYKNPLYFPQLHVLE 91
++ +L L + SD N+K R S+ + + L K+ Y L VL
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDH---SSNIKLRIHSIQAELR---RLLKSKPYENCLLVLL 251
Query: 92 PIASMRHIKLWKGLYCR 108
+ + + + L C+
Sbjct: 252 NVQNAKAWNAF-NLSCK 267
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.016
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 14/41 (34%)
Query: 54 ERNQENMKQRTVSLWSYINSSLDLYKNPLYFPQLHV---LE 91
E+ +K+ + +SL LY P L + +E
Sbjct: 18 EKQA--LKK--------LQASLKLYA-DDSAPALAIKATME 47
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 26.0 bits (58), Expect = 3.2
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 3 GSPVFLQLIDAVWQVTTMFR--HAFE 26
G PV LQ++ A + + E
Sbjct: 405 GMPVGLQVVGAYGEDGKVLALGGWLE 430
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 25.2 bits (56), Expect = 6.4
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 2 KGSPVFLQLIDAVWQVTTMFR--HAFE 26
PV +Q+I + +FR A E
Sbjct: 432 NNLPVGVQVIGRRFADGKVFRIARAIE 458
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 25.2 bits (56), Expect = 6.9
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 2 KGSPVFLQLIDAVWQVTTMFR--HAFE 26
G P+ LQ I + T++R + +E
Sbjct: 447 NGRPIGLQFIGKPFDEKTLYRVAYQYE 473
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.138 0.453
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,818,803
Number of extensions: 88056
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 19
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.9 bits)