RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1508
         (119 letters)



>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2,
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 387

 Score =  153 bits (389), Expect = 3e-47
 Identities = 74/109 (67%), Positives = 87/109 (79%), Gaps = 1/109 (0%)

Query: 4   SPVFLQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSDRERNQENMKQR 63
           SPVFLQ ID VWQ+T  F  AFEFNE+FLITILDHLYSC FGTFL NS+++R +EN+ +R
Sbjct: 279 SPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKR 338

Query: 64  TVSLWSYINSSLDLYKNPLYFPQL-HVLEPIASMRHIKLWKGLYCRWNP 111
           TVSLWSYINS L+ + NPLY     HVL P+ASMRH++LW G Y RWNP
Sbjct: 339 TVSLWSYINSQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNP 387


>d1jnra1 a.7.3.1 (A:503-643) Adenylylsulfate reductase A subunit
           {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 141

 Score = 23.8 bits (51), Expect = 5.6
 Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 13/78 (16%)

Query: 8   LQLIDAVWQVTTMFRHAFEFNEHFLITILDHLYSCRFGTFLFNSD-RERNQENMKQRTVS 66
            +L+  VW      RH     E             R+  + + +D  E N E  K    S
Sbjct: 70  WELVHRVWTAEAHVRHMLFRKE------------TRWPGYYYRTDYPELNDEEWKCFVCS 117

Query: 67  LWSYINSSLDLYKNPLYF 84
            +          K P   
Sbjct: 118 KYDAEKDEWTFEKVPYVQ 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.138    0.453 

Gapped
Lambda     K      H
   0.267   0.0681    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 458,483
Number of extensions: 18248
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 7
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.0 bits)