BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15087
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 120/187 (64%), Gaps = 6/187 (3%)
Query: 152 ANLIVPEEI-NGS---WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYG 207
ANLI+ E + NG+ + +IAG + K+ L + VI P L +GL P +G+LL+G
Sbjct: 98 ANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELF--TGLRAPARGLLLFG 155
Query: 208 PPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDE 267
PPG GKTM+AKA A E+N +F N+ ++LT K GE KL A+F++A ++QP IIFID+
Sbjct: 156 PPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQ 215
Query: 268 IXXXXXXXXXXXHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPK 327
+ H+A+ +LK+ FL ++DG+ + + +++MGATNRP ++D A+ RR K
Sbjct: 216 VDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIK 275
Query: 328 KYHIKLP 334
+ ++ LP
Sbjct: 276 RVYVSLP 282
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+W++IAG+E K + + V++PM ++ +GL PPKGILL+GPPG GKT+I K A
Sbjct: 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIF--TGLRGPPKGILLFGPPGTGKTLIGKCIAS 139
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXXXXHEA 282
++ +F ++ S+LT K GE K+ A+F++A QP +IFIDEI HE+
Sbjct: 140 QSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHES 199
Query: 283 TAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLSS 338
+ ++K+ FL + DG TT I+++GATNRP +ID A RR+ K+ +I LP S+
Sbjct: 200 SRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASA 255
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 114/187 (60%), Gaps = 7/187 (3%)
Query: 153 NLIVPEEINGS----WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGP 208
LI+ E + G W +IAG + K+ L + VI P L +GL P KG+LL+GP
Sbjct: 5 QLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELF--TGLRAPAKGLLLFGP 62
Query: 209 PGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEI 268
PG GKT++A+A A E + +F+N+ ++LT K G+ KL A+F++A +QP IIFIDE+
Sbjct: 63 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122
Query: 269 XXXXXXXXXXXHEATAQLKSIFLSKWDGLTTDKNID-IIIMGATNRPDDIDPAIARRMPK 327
HEA+ +LK+ FL ++DGL + + D I+++ ATNRP ++D A RR K
Sbjct: 123 DSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTK 182
Query: 328 KYHIKLP 334
+ ++ LP
Sbjct: 183 RVYVSLP 189
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 120/203 (59%), Gaps = 3/203 (1%)
Query: 136 GLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESG 195
G D G + N ++ I+ E+ N W+++AGLE K+ L ++VI P+K +L K G
Sbjct: 22 GEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--G 79
Query: 196 LLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLA 255
KP GILLYGPPG GK+ +AKA A EAN +F ++ S L K GES KL +F++A
Sbjct: 80 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA 139
Query: 256 EKIQPCIIFIDEIXXXXXXXXXXXHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD 315
+ +P IIFID++ EA+ ++K+ L + +G+ D ++++GATN P
Sbjct: 140 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ-GVLVLGATNIPW 198
Query: 316 DIDPAIARRMPKKYHIKLPLLSS 338
+D AI RR ++ +I LP L++
Sbjct: 199 QLDSAIRRRFERRIYIPLPDLAA 221
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 120/203 (59%), Gaps = 3/203 (1%)
Query: 136 GLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESG 195
G D G + N ++ I+ E+ N W+++AGLE K+ L ++VI P+K +L K G
Sbjct: 7 GEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--G 64
Query: 196 LLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLA 255
KP GILLYGPPG GK+ +AKA A EAN +F ++ S L K GES KL +F++A
Sbjct: 65 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA 124
Query: 256 EKIQPCIIFIDEIXXXXXXXXXXXHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPD 315
+ +P IIFID++ EA+ ++K+ L + +G+ D ++++GATN P
Sbjct: 125 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ-GVLVLGATNIPW 183
Query: 316 DIDPAIARRMPKKYHIKLPLLSS 338
+D AI RR ++ +I LP L++
Sbjct: 184 QLDSAIRRRFERRIYIPLPDLAA 206
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 113/184 (61%), Gaps = 3/184 (1%)
Query: 155 IVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKT 214
I+ E+ N W+++AGLE K+ L ++VI P+K +L K G KP GILLYGPPG GK+
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKS 65
Query: 215 MIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXX 274
+AKA A EAN +F ++ S L K GES KL +F++A + +P IIFID++
Sbjct: 66 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 125
Query: 275 XXXXXHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLP 334
EA+ ++K+ L + +G+ D ++++GATN P +D AI RR ++ +I LP
Sbjct: 126 RGEGESEASRRIKTELLVQMNGVGNDSQ-GVLVLGATNIPWQLDSAIRRRFERRIYIPLP 184
Query: 335 LLSS 338
L++
Sbjct: 185 DLAA 188
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 111/181 (61%), Gaps = 3/181 (1%)
Query: 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIA 217
E+ N W+++AGLE K+ L ++VI P+K +L K G KP GILLYGPPG GK+ +A
Sbjct: 20 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKSYLA 77
Query: 218 KATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXX 277
KA A EAN +F ++ S L K GES KL +F++A + +P IIFIDE+
Sbjct: 78 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGE 137
Query: 278 XXHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKLPLLS 337
EA+ ++K+ L + +G+ D ++++GATN P +D AI RR ++ +I LP L+
Sbjct: 138 GESEASRRIKTELLVQMNGVGNDSQ-GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLA 196
Query: 338 S 338
+
Sbjct: 197 A 197
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 131 bits (330), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 107/181 (59%), Gaps = 4/181 (2%)
Query: 155 IVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKT 214
IV E N W ++AGLE K+ L ++VI P+K +L +G P +GILL+GPPG GK+
Sbjct: 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKS 181
Query: 215 MIAKATAKEANVS-FINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXX 273
+AKA A EAN S F ++ S L K GES KL +F LA + +P IIFIDEI
Sbjct: 182 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG 241
Query: 274 XXXXXXHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKL 333
EA ++K+ FL + G+ D N I+++GATN P +D AI RR K+ +I L
Sbjct: 242 SRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSAIRRRFEKRIYIPL 300
Query: 334 P 334
P
Sbjct: 301 P 301
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 107/181 (59%), Gaps = 4/181 (2%)
Query: 155 IVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKT 214
IV E N W ++AGLE K+ L ++VI P+K +L +G P +GILL+GPPG GK+
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKS 59
Query: 215 MIAKATAKEANVS-FINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXX 273
+AKA A EAN S F ++ S L K GES KL +F LA + +P IIFIDEI
Sbjct: 60 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG 119
Query: 274 XXXXXXHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIARRMPKKYHIKL 333
EA ++K+ FL + G+ D N I+++GATN P +D AI RR K+ +I L
Sbjct: 120 SRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSAIRRRFEKRIYIPL 178
Query: 334 P 334
P
Sbjct: 179 P 179
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 5/176 (2%)
Query: 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKAT 220
N +W +I LE I++EL +++ P++N + K GL+ P G+LL GPPGCGKT++AKA
Sbjct: 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTP-AGVLLAGPPGCGKTLLAKAV 64
Query: 221 AKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXXXXH 280
A E+ ++FI++ L + GES + +F A+ PC+IF DE+
Sbjct: 65 ANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET 124
Query: 281 EATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
A+ ++ + L++ DGL + + IM ATNRPD IDPAI R R+ K + LP
Sbjct: 125 GASVRVVNQLLTEMDGLEARQQ--VFIMAATNRPDIIDPAILRPGRLDKTLFVGLP 178
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 104/177 (58%), Gaps = 8/177 (4%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+W++I GLE +K+EL + V +P+++ + + G+ P KG+L YGPPGCGKT++AKA A
Sbjct: 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIAN 71
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDE---IXXXXXXXXXXX 279
E +FI++ L +GES IF A + PC++F DE I
Sbjct: 72 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 131
Query: 280 HEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
A ++ + L++ DG++T KN+ I+GATNRPD IDPAI R R+ + +I LP
Sbjct: 132 GGAADRVINQILTEMDGMSTKKNV--FIIGATNRPDIIDPAILRPGRLDQLIYIPLP 186
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 104/177 (58%), Gaps = 8/177 (4%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+W++I GLE +K+EL + V +P+++ + + G+ P KG+L YGPPGCGKT++AKA A
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDE---IXXXXXXXXXXX 279
E +FI++ L +GES IF A + PC++F DE I
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 280 HEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
A ++ + L++ DG++T KN + I+GATNRPD IDPAI R R+ + +I LP
Sbjct: 594 GGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 92/174 (52%), Gaps = 5/174 (2%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+ ++ G ++ + V P+++ L K G+ KPP+GILLYGPPG GKT+IA+A A
Sbjct: 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVAN 260
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXXXXHEA 282
E F ++ + KL GES F AEK P IIFIDE+ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 283 TAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
++ S L+ DGL + +I+M ATNRP+ IDPA+ R R ++ I +P
Sbjct: 321 ERRIVSQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 104/177 (58%), Gaps = 8/177 (4%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+W++I GLE +K+EL + V +P+++ + + G+ P KG+L YGPPGCGKT++AKA A
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDE---IXXXXXXXXXXX 279
E +FI++ L +GES IF A + PC++F DE I
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 280 HEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
A ++ + L++ DG++T KN + I+GATNRPD IDPAI R R+ + +I LP
Sbjct: 594 GGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 92/174 (52%), Gaps = 5/174 (2%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+ +I G ++ + V P+++ L K G+ KPP+GILLYGPPG GKT+IA+A A
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVAN 260
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXXXXHEA 282
E F ++ + KL GES F AEK P IIFIDE+ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 283 TAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
++ S L+ DGL + +I+M ATNRP+ IDPA+ R R ++ I +P
Sbjct: 321 ERRIVSQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 100/176 (56%), Gaps = 6/176 (3%)
Query: 151 AANLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPG 210
A + V E N +++I GLE +E+ + V P+K+ L ++ G+ +PPKGILLYGPPG
Sbjct: 3 AKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPG 61
Query: 211 CGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXX 270
GKT++AKA A E N +FI + S L K GE L IF LA++ P IIFIDEI
Sbjct: 62 TGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDA 121
Query: 271 XXXXXXXXXHEATAQLKSI---FLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR 323
+++ L++ DG D D+ I+GATNRPD +DPAI R
Sbjct: 122 IAAKRTDALTGGDREVQRTLMQLLAEMDGF--DARGDVKIIGATNRPDILDPAILR 175
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 99/177 (55%), Gaps = 8/177 (4%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
++ I GL +EL + + P+KN + + G+ KPPKG+LLYGPPG GKT++AKA A
Sbjct: 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAA 237
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXXXXHEA 282
+FI S + DK GES ++ +F+ A++ +PCIIF+DE+ A
Sbjct: 238 TIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSA 297
Query: 283 TAQLKSI---FLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
+++ L++ DG II+ ATNRPD +DPA+ R R+ +K I LP
Sbjct: 298 DREIQRTLMELLTQMDGFDNLGQTKIIM--ATNRPDTLDPALLRPGRLDRKVEIPLP 352
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 104/184 (56%), Gaps = 10/184 (5%)
Query: 158 EEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIA 217
E+ + ++ ++ GL+ K+E+ ++V P+ +L ++ G+ PP+G+LLYGPPG GKTM+
Sbjct: 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLV 223
Query: 218 KATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXX 277
KA A +FI ++ S K GE P++ +F LA + P IIFIDE+
Sbjct: 224 KAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFD 283
Query: 278 XXHEATAQLKSI---FLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIK 332
+ +++ I L++ DG N+ +I+ ATNR D +DPA+ R R+ +K I+
Sbjct: 284 AQTGSDREVQRILIELLTQMDGFDQSTNVKVIM--ATNRADTLDPALLRPGRLDRK--IE 339
Query: 333 LPLL 336
P L
Sbjct: 340 FPSL 343
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 101/184 (54%), Gaps = 8/184 (4%)
Query: 156 VPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTM 215
V E+ ++ ++ GL+ +EL ++++ PMK + K+ G+ + PKG L+YGPPG GKT+
Sbjct: 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTL 230
Query: 216 IAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXX 275
+A+A A + N +F+ L L GE KL F+LA++ P IIFIDE+
Sbjct: 231 LARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKR 290
Query: 276 XXXXHEATAQLKSI---FLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYH 330
+++ L++ DG ++D + + + ATNR D +DPA+ R R+ +K
Sbjct: 291 FDSEKSGDREVQRTMLELLNQLDGFSSDDRVKV--LAATNRVDVLDPALLRSGRLDRKIE 348
Query: 331 IKLP 334
LP
Sbjct: 349 FPLP 352
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 92/174 (52%), Gaps = 5/174 (2%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+ +I G ++ + V P+++ L K G+ KPP+GILLYGPPG GKT+IA+A A
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVAN 260
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXXXXHEA 282
E F ++ + KL GES F AEK P IIFIDE+ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 283 TAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
++ S L+ DGL + +I+M ATNRP+ IDPA+ R R ++ I +P
Sbjct: 321 ERRIVSQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 92/174 (52%), Gaps = 5/174 (2%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+ +I G ++ + V P+++ L K G+ KPP+GILLYGPPG GKT+IA+A A
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVAN 260
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXXXXHEA 282
E F ++ + KL GES F AEK P IIFIDE+ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 283 TAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
++ S L+ DGL + +I+M ATNRP+ IDPA+ R R ++ I +P
Sbjct: 321 ERRIVSQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 92/174 (52%), Gaps = 5/174 (2%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+ +I G ++ + V P+++ L K G+ KPP+GILLYGPPG GKT+IA+A A
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVAN 260
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXXXXHEA 282
E F ++ + KL GES F AEK P IIFIDE+ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 283 TAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
++ S L+ DGL + +I+M ATNRP+ IDPA+ R R ++ I +P
Sbjct: 321 ERRIVSQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 92/174 (52%), Gaps = 5/174 (2%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
+ ++ G ++ + V P+++ L K G+ KPP+GILLYGPPG GKT+IA+A A
Sbjct: 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVAN 260
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXXXXHEA 282
E F ++ + KL GES F AEK P IIFIDE+ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 283 TAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
++ S L+ DGL + +I+M ATNRP+ IDPA+ R R ++ I +P
Sbjct: 321 ERRIVSQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP 372
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 102/181 (56%), Gaps = 8/181 (4%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
S+ +I GLE +E+ +SV P+ + L +E G+ KPPKG++LYG PG GKT++AKA A
Sbjct: 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVAN 238
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXXXXHEA 282
+ + +F+ + S L K G+ P+L IF +A + P I+FIDEI
Sbjct: 239 QTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGG 298
Query: 283 TAQLKSI---FLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLPLLS 337
+++ L++ DG D D+ ++ ATN+ + +DPA+ R R+ +K + P LS
Sbjct: 299 EREIQRTMLELLNQLDGF--DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356
Query: 338 S 338
+
Sbjct: 357 T 357
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 99/183 (54%), Gaps = 8/183 (4%)
Query: 161 NGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKAT 220
+ ++ + GL KE+ + + P+K+ L + G+ +P KG++LYGPPG GKT++A+A
Sbjct: 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGVILYGPPGTGKTLLARAV 202
Query: 221 AKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXXXXH 280
A + FI + + L K GE ++ +F +A + P IIF+DEI
Sbjct: 203 AHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSG 262
Query: 281 EATAQLKSI---FLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLPL 335
++++ L++ DG T KNI II+ ATNR D +DPA+ R R+ +K P
Sbjct: 263 GGDSEVQRTMLELLNQLDGFETSKNIKIIM--ATNRLDILDPALLRPGRIDRKIEFPPPS 320
Query: 336 LSS 338
+++
Sbjct: 321 VAA 323
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 9/186 (4%)
Query: 154 LIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGK 213
++ ++I ++ ++AG + K+E+ + V + + K G K PKG+L+ GPPG GK
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGG--KIPKGVLMVGPPGTGK 58
Query: 214 TMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXX 273
T++AKA A EA V F + S + G +F A+K PCIIFIDEI
Sbjct: 59 TLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR 118
Query: 274 XXXX---XXHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKK 328
H+ Q + L + DG + N II++ ATNRPD +DPA+ R R ++
Sbjct: 119 QRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQ 176
Query: 329 YHIKLP 334
+ LP
Sbjct: 177 VVVGLP 182
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 92/177 (51%), Gaps = 9/177 (5%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
++K++ G E +EL + V F +K+ + G + PKGILL GPPG GKT++A+A A
Sbjct: 14 TFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGA-RMPKGILLVGPPGTGKTLLARAVAG 71
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXX---XX 279
EANV F ++ S + G +F+ A+ PCI+FIDEI
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 280 HEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
H+ Q + L + DG D II+M ATNRPD +DPA+ R R KK + P
Sbjct: 132 HDEREQTLNQLLVEMDGF--DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPP 186
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 8/190 (4%)
Query: 154 LIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGK 213
+ V E+ + ++ ++ G + ++L + V P+ + G+ PPKGILLYGPPG GK
Sbjct: 198 MTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI-DPPKGILLYGPPGTGK 256
Query: 214 TMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXX 273
T+ A+A A + +FI + S L K GE ++ +F +A + CIIF DEI
Sbjct: 257 TLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGG 316
Query: 274 XXXXXXHEATAQLKSIFL---SKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKK 328
+++ L ++ DG NI +M ATNRP+ +DPA+ R R+ +K
Sbjct: 317 ARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIK--VMFATNRPNTLDPALLRPGRIDRK 374
Query: 329 YHIKLPLLSS 338
LP L
Sbjct: 375 VEFSLPDLEG 384
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 91/177 (51%), Gaps = 9/177 (5%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
++K++ G E +EL + V F +K+ + G + PKGILL GPPG G T++A+A A
Sbjct: 14 TFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGA-RMPKGILLVGPPGTGATLLARAVAG 71
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXX---XX 279
EANV F ++ S + G +F+ A+ PCI+FIDEI
Sbjct: 72 EANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131
Query: 280 HEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
H+ Q + L + DG D II+M ATNRPD +DPA+ R R KK + P
Sbjct: 132 HDEREQTLNQLLVEMDGF--DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPP 186
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 93/173 (53%), Gaps = 13/173 (7%)
Query: 158 EEINGSWKNIAGLEHIKKELNQSVIF---PMKNRNLLKESGLLKPPKGILLYGPPGCGKT 214
E+ N +K++AG E K+E+ + V F P + NL K PKG+LL GPPG GKT
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGA-----KIPKGVLLVGPPGTGKT 58
Query: 215 MIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEI----XX 270
++AKA A EA+V F ++ S+ + G +F A+K P IIFIDEI
Sbjct: 59 LLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKS 118
Query: 271 XXXXXXXXXHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR 323
++ Q + L++ DG ++ N +I++ ATNRP+ +DPA+ R
Sbjct: 119 RAAGGVVSGNDEREQTLNQLLAEMDGFGSE-NAPVIVLAATNRPEILDPALMR 170
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 94/177 (53%), Gaps = 9/177 (5%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
++K++AG E K+EL + V F +KN + E G + PKG+LL GPPG GKT +A+A A
Sbjct: 29 TFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAG 86
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXXXX--- 279
EA V FI S + G +F A++ PCI+FIDEI
Sbjct: 87 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 146
Query: 280 HEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
++ Q + L + DG +K+ I++M ATNRPD +DPA+ R R ++ I P
Sbjct: 147 NDEREQTLNQLLVEMDGF--EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 201
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 94/177 (53%), Gaps = 9/177 (5%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
++K++AG E K+EL + V F +KN + E G + PKG+LL GPPG GKT +A+A A
Sbjct: 38 TFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXXXX--- 279
EA V FI S + G +F A++ PCI+FIDEI
Sbjct: 96 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 155
Query: 280 HEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
++ Q + L + DG +K+ I++M ATNRPD +DPA+ R R ++ I P
Sbjct: 156 NDEREQTLNQLLVEMDGF--EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 10/180 (5%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
S+K++AG+ K E+ + V + L+ K PKG LL GPPGCGKT++AKA A
Sbjct: 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGA--KVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXXX---- 278
EA V F+ + + + + G ++F A PCI++IDEI
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 279 XHEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLPLL 336
+ Q + L + DG+ T + +I++ +TNR D +D A+ R R+ + I LP L
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDH--VIVLASTNRADILDGALMRPGRLDRHVFIDLPTL 179
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 94/177 (53%), Gaps = 9/177 (5%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
++K++AG E K+EL + V F +KN + E G + PKG+LL GPPG GKT +A+A A
Sbjct: 38 TFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAG 95
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXX---XX 279
EA V FI S + G +F A++ PCI+FIDEI
Sbjct: 96 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 155
Query: 280 HEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
++ Q + L + DG +K+ I++M ATNRPD +DPA+ R R ++ I P
Sbjct: 156 NDEREQTLNQLLVEMDGF--EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 94/177 (53%), Gaps = 9/177 (5%)
Query: 163 SWKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAK 222
++K++AG E K+EL + V F +KN + E G + PKG+LL GPPG GKT +A+A A
Sbjct: 14 TFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAG 71
Query: 223 EANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEIXXXXXXXXX---XX 279
EA V FI S + G +F A++ PCI+FIDEI
Sbjct: 72 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 131
Query: 280 HEATAQLKSIFLSKWDGLTTDKNIDIIIMGATNRPDDIDPAIAR--RMPKKYHIKLP 334
++ Q + L + DG +K+ I++M ATNRPD +DPA+ R R ++ I P
Sbjct: 132 NDEREQTLNQLLVEMDGF--EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 186
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 28/193 (14%)
Query: 171 EHIKKELNQSVIFPMKNRNLLKESGLLKP------PKGILLYGPPGCGKTMIAKATAKEA 224
+HI + + + RN + L +P PK IL+ GP G GKT IA+ AK A
Sbjct: 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74
Query: 225 NVSFINLDISTLTDKLYGESPKLATAIFSLAEKI--------QPCIIFIDEIXXXXXXXX 276
N FI ++ + T+ Y ++ + I L + Q I+FIDEI
Sbjct: 75 NAPFIKVEATKFTEVGY-VGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE 133
Query: 277 XXXHEATAQ---------LKSIFLSKWDGLTTDKNIDIIIMGA--TNRPDDIDPAIARRM 325
+ + + ++ +S G+ +I I GA RP D+ P + R+
Sbjct: 134 YSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL 193
Query: 326 PKKYHIKLPLLSS 338
P ++L LS+
Sbjct: 194 P--IRVELTALSA 204
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 155 IVPEEINGSW-KNIAGLEHIKKELNQSVIFPMKNR----NLLKESGLLKPPKGILLYGPP 209
+ P EI K+I G ++ K+ SV ++NR L +E PK IL+ GP
Sbjct: 3 MTPREIVSELDKHIIGQDNAKR----SVAIALRNRWRRMQLNEELRHEVTPKNILMIGPT 58
Query: 210 GCGKTMIAKATAKEANVSFINLDISTLTDKLY 241
G GKT IA+ AK AN FI ++ + T+ Y
Sbjct: 59 GVGKTEIARRLAKLANAPFIKVEATKFTEVGY 90
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 155 IVPEEINGSW-KNIAGLEHIKKELNQSVIFPMKNR----NLLKESGLLKPPKGILLYGPP 209
+ P EI K+I G ++ K+ SV ++NR L +E PK IL+ GP
Sbjct: 10 MTPREIVSELDKHIIGQDNAKR----SVAIALRNRWRRMQLNEELRHEVTPKNILMIGPT 65
Query: 210 GCGKTMIAKATAKEANVSFINLDISTLTDKLY 241
G GKT IA+ AK AN FI ++ + T+ Y
Sbjct: 66 GVGKTEIARRLAKLANAPFIKVEATKFTEVGY 97
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 155 IVPEEINGSW-KNIAGLEHIKKELNQSVIFPMKNR----NLLKESGLLKPPKGILLYGPP 209
+ P EI K+I G ++ K+ SV ++NR L +E PK IL+ GP
Sbjct: 4 MTPREIVSELDKHIIGQDNAKR----SVAIALRNRWRRMQLNEELRHEVTPKNILMIGPT 59
Query: 210 GCGKTMIAKATAKEANVSFINLDISTLTDKLY 241
G GKT IA+ AK AN FI ++ + T+ Y
Sbjct: 60 GVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 154 LIVPEEINGSWKN-IAGLEHIKKELNQSVIFPMKN-RNLLKESGLLKPPKGILLYGPPGC 211
L P EI + + G E KK L +V K RN +G+ ILL GP G
Sbjct: 3 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGS 62
Query: 212 GKTMIAKATAKEANVSFINLDISTLTDKLY-GES-----PKLATAIFSLAEKIQPCIIFI 265
GKT++A+ A+ +V F D +TLT+ Y GE KL +K Q I++I
Sbjct: 63 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYI 122
Query: 266 DEI 268
D+I
Sbjct: 123 DQI 125
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 154 LIVPEEINGSWKN-IAGLEHIKKELNQSVIFPMKN-RNLLKESGLLKPPKGILLYGPPGC 211
L P EI + + G E KK L +V K RN +G+ ILL GP G
Sbjct: 3 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGS 62
Query: 212 GKTMIAKATAKEANVSFINLDISTLTDKLY-GES-----PKLATAIFSLAEKIQPCIIFI 265
GKT++A+ A+ +V F D +TLT+ Y GE KL +K Q I++I
Sbjct: 63 GKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYI 122
Query: 266 DEI 268
D+I
Sbjct: 123 DQI 125
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 171 EHIKKELNQSVIFPMKNRNLLKESGLLKP------PKGILLYGPPGCGKTMIAKATAKEA 224
+HI + + + RN + L +P PK IL+ GP G GKT IA+ AK A
Sbjct: 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74
Query: 225 NVSFINLDISTLTDKLY 241
N FI ++ + T+ Y
Sbjct: 75 NAPFIKVEATKFTEVGY 91
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 171 EHIKKELNQSVIFPMKNRNLLKESGLLKP------PKGILLYGPPGCGKTMIAKATAKEA 224
+HI + + + RN + L +P PK IL GP G GKT IA+ AK A
Sbjct: 15 QHIIGQADAKRAVAIALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIARRLAKLA 74
Query: 225 NVSFINLDISTLTDKLY 241
N FI ++ + T+ Y
Sbjct: 75 NAPFIKVEATKFTEVGY 91
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 164 WKNIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE 223
+K ++ E +KK+ NQ N L + ILL GP G GKT++A+ AK
Sbjct: 41 YKRLSFKEKLKKQDNQD-----SNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95
Query: 224 ANVSFINLDISTLTDKLY-GES-----PKLATAIFSLAEKIQPCIIFIDEI 268
++ D ++LT+ Y GE +L A +K Q I+FIDEI
Sbjct: 96 LDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEI 146
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 199 PPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYG--ESPKLAT--AIFSL 254
P +LL GPP GKT +A A+E+N FI + DK+ G E+ K IF
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI---CSPDKMIGFSETAKCQAMKKIFDD 118
Query: 255 AEKIQPCIIFIDEI 268
A K Q + +D+I
Sbjct: 119 AYKSQLSCVVVDDI 132
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYG--ESPKLAT--AIFSLAEKI 258
+LL GPP GKT +A A+E+N FI + DK+ G E+ K IF A K
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKI---CSPDKMIGFSETAKCQAMKKIFDDAYKS 123
Query: 259 QPCIIFIDEI 268
Q + +D+I
Sbjct: 124 QLSCVVVDDI 133
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIF--SLA 255
+P + +LL+GPPG GKT +A A E V+ +T E P AI SL
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNL------RVTSGPAIEKPGDLAAILANSLE 89
Query: 256 EKIQPCIIFIDEI 268
E I+FIDEI
Sbjct: 90 EG---DILFIDEI 99
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 196 LLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKL 240
LL +GI+L GPPG GKTMI + + +V IN T T+ +
Sbjct: 1044 LLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHI 1091
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 196 LLKPPKGILLYGPPGCGKTMIAKATAKEA---NVSFINLDISTLTDKL 240
LL +GI+L GPPG GKTMI + + +V IN T T+ +
Sbjct: 1263 LLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHI 1310
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIF--SLA 255
+P + +LL+GPPG GKT +A A E V+ +T E P AI SL
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNL------RVTSGPAIEKPGDLAAILANSLE 89
Query: 256 EKIQPCIIFIDEI 268
E I+FIDEI
Sbjct: 90 EG---DILFIDEI 99
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK 239
+ L GPPG GKT +AK+ AK F+ + + + D+
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDE 147
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCI 262
++L+GPPG GKT +A+ A+ AN + T K E+ + A + + I
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRR---TI 109
Query: 263 IFIDEI 268
+F+DE+
Sbjct: 110 LFVDEV 115
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIF--SLA 255
+P + +LL+GPPG GKT +A A E V+ +T E P AI SL
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNL------RVTSGPAIEKPGDLAAILANSLE 89
Query: 256 EKIQPCIIFIDEI 268
E I+FIDEI
Sbjct: 90 EG---DILFIDEI 99
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLD 232
I L G G GKT + KA A++ NV FI+LD
Sbjct: 28 IFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 195 GLLKPPKGI--LLYGPPGCGKTMIAKATAKEANVSFINLDISTL 236
G ++ PKGI L+ G PG GKT +A+ A E + F +L++ L
Sbjct: 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELD-GFQHLEVGKL 45
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLY 241
ILL G PG GKT + K A ++ + +IN+ ++LY
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLY 45
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLY 241
ILL G PG GKT + K A ++ + +IN+ ++LY
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLY 52
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 201 KGILLYGPPGCGKTMIAKATAKE 223
+ +LL GPPG GKT +A A A+E
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQE 100
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 201 KGILLYGPPGCGKTMIAKATAKE 223
+ +LL GPPG GKT +A A A+E
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQE 86
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK 239
+ +LYGPPG GKT A A+E + + S + K
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 17/100 (17%)
Query: 169 GLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSF 228
G E IKK LN + K L IL GP G GKT +A + E +
Sbjct: 33 GQESIKKNLNVFIAAAKKRNECLDH---------ILFSGPAGLGKTTLANIISYEXSA-- 81
Query: 229 INLDISTLTDKLYGESPKLATAIFSLAEKIQPCIIFIDEI 268
+I T +S LA + +L+E I+FIDEI
Sbjct: 82 ---NIKTTAAPXIEKSGDLAAILTNLSEG---DILFIDEI 115
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 201 KGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
+ I L GP G GK+ I + A++ N+ F + D
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCI 262
+LL GPPG GKT +A A E + +I + + + +A + SL + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE-----LQTNIHVTSGPVLVKQGDMAAILTSLE---RGDV 105
Query: 263 IFIDEI 268
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCI 262
+LL GPPG GKT +A A E + +I + + + +A + SL + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE-----LQTNIHVTSGPVLVKQGDMAAILTSLE---RGDV 105
Query: 263 IFIDEI 268
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCI 262
+LL GPPG GKT +A A E + +I + + + +A + SL + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE-----LQTNIHVTSGPVLVKQGDMAAILTSLE---RGDV 105
Query: 263 IFIDEI 268
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCI 262
+LL GPPG GKT +A A E + +I + + + +A + SL + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE-----LQTNIHVTSGPVLVKQGDMAAILTSLE---RGDV 105
Query: 263 IFIDEI 268
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCI 262
+LL GPPG GKT +A A E + +I + + + +A + SL + +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE-----LQTNIHVTSGPVLVKQGDMAAILTSLE---RGDV 105
Query: 263 IFIDEI 268
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1SHK|A Chain A, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|A Chain A, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
pdb|1SHK|B Chain B, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|B Chain B, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
Length = 173
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDI 233
I + G GCGKT + + A+ F++ DI
Sbjct: 5 IFMVGARGCGKTTVGRELARALGYEFVDTDI 35
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 203 ILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDKLYGESPKLATAIFSLAEKIQPCI 262
+LL GPPG G+T +A A E + +I + + + +A + SL + +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASE-----LQTNIHVTSGPVLVKQGDMAAILTSLE---RGDV 105
Query: 263 IFIDEI 268
+FIDEI
Sbjct: 106 LFIDEI 111
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 203 ILLYGPPGCGKTMIAKATAKE---ANVSFINLDISTLTDK 239
+L YGPPG GKT A A+E N S + L+++ D+
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR 88
>pdb|3VOT|A Chain A, Crystal Structure Of L-Amino Acid Ligase From Bacillus
Licheniformis
pdb|3VOT|B Chain B, Crystal Structure Of L-Amino Acid Ligase From Bacillus
Licheniformis
Length = 425
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 148 LKIAANLIVPEEINGSWKNIAGLEHIKKELNQSVIFPMKNRN 189
++ A N I+P + +G+++ I GLE +K+ +F R
Sbjct: 333 VRTAGNYIIPVQGSGTFEKIDGLEEVKQRQEVKRVFQFMRRG 374
>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And Adp
pdb|2IYR|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYR|B Chain B, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYS|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate, Open Lid (Conf. A)
pdb|2IYT|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Unliganded State, Open Lid (conf. A)
pdb|2IYU|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. A)
pdb|2IYV|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. B)
pdb|2IYW|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Mgatp, Open Lid (Conf. B)
pdb|2IYX|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And So4
pdb|2IYY|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And So4
pdb|2IYZ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And Adp
Length = 184
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDIS 234
PK +L+ G PG GK+ I + AK V ++ D++
Sbjct: 3 PKAVLV-GLPGSGKSTIGRRLAKALGVGLLDTDVA 36
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
pdb|1U8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Adp At 2.15
Angstrom Resolution
pdb|1WE2|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Shikimic Acid
pdb|1ZYU|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Amppcp At 2.85
Angstrom Resolution
pdb|2G1J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1J|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate At 1.75 Angstrom
Resolution
pdb|2DFN|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Shikimate At 1.9
Angstrons Of Resolution
pdb|2DFT|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|B Chain B, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|C Chain C, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|D Chain D, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|3BAF|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Amp-Pnp
Length = 176
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLDIS 234
PK +L+ G PG GK+ I + AK V ++ D++
Sbjct: 3 PKAVLV-GLPGSGKSTIGRRLAKALGVGLLDTDVA 36
>pdb|2P5T|B Chain B, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|D Chain D, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|F Chain F, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|H Chain H, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
Length = 253
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 188 RNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE--ANVSFINLD 232
R+L + K P ILL G G GKT I + KE N+ I+ D
Sbjct: 20 RSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGD 66
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 14/58 (24%)
Query: 166 NIAGLEHIKKELNQSVIFPMKNRNLLKESGLLKPPKGILLYGPPGCGKTMIAKATAKE 223
+I G EHI K L V ++G + +L GPPG GKT A A A+E
Sbjct: 26 DIVGQEHIVKRLKHYV-----------KTGSMP---HLLFAGPPGVGKTTAALALARE 69
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAKE---ANVSFINLDISTLTDKLYGESPKLATAIFSL 254
+P + GP G GKT +A+A A+ S I +D+S + K +T+ L
Sbjct: 519 RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME-------KHSTSGGQL 571
Query: 255 AEKIQP---CIIFIDEI 268
EK++ ++ +D I
Sbjct: 572 TEKVRRKPYSVVLLDAI 588
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 184 PMKNRNLLKESGL-LKPPKGILLYGPPGCGKTMIA 217
P+K RN E L K K ++ P GCGKT ++
Sbjct: 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVS 36
>pdb|1VIA|A Chain A, Crystal Structure Of Shikimate Kinase
pdb|1VIA|B Chain B, Crystal Structure Of Shikimate Kinase
Length = 175
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
K I+ G G GK+ +A+A AK+ ++ F++ D
Sbjct: 4 AKNIVFIGFXGSGKSTLARALAKDLDLVFLDSD 36
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 201 KGILLYGPPGCGKTMIAKATAKE-ANVSFINLDISTLT 237
+ ++L GPPG GKTM +T + + ++L+ S+ T
Sbjct: 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT 1342
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 201 KGILLYGPPGCGKTMIAKATAKE-ANVSFINLDISTLT 237
+ ++L GPPG GKTM +T + + ++L+ S+ T
Sbjct: 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT 1342
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 198 KPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDISTLTDK 239
KP L GP G GKT + +K + + D+S ++
Sbjct: 486 KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMER 527
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 203 ILLYGPPGCGKTMIAKATAKE 223
+L YGPPG GKT A KE
Sbjct: 61 MLFYGPPGTGKTSTILALTKE 81
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 114 SGTSTFNVLLAITTAYEKLKKVGLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHI 173
SG S+ L+A+ T L+ +G+ EL +A NLI ++ + N+ LEH+
Sbjct: 97 SGLSSLQKLVAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 190 LLKESGLLKPPKGILLYGPPGCGKTMIAKATAKEANVSFINLDIST 235
L++ ++ P LL G PG GKT + A +E + I +D T
Sbjct: 23 LIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT 68
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 114 SGTSTFNVLLAITTAYEKLKKVGLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHI 173
SG S+ L+A+ T L+ +G+ EL +A NLI ++ + N+ LEH+
Sbjct: 97 SGLSSLQKLVAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 114 SGTSTFNVLLAITTAYEKLKKVGLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHI 173
SG S+ L+A+ T L+ +G+ EL +A NLI ++ + N+ LEH+
Sbjct: 121 SGLSSLQKLVAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 200 PKGILLYGPPGCGKTMIAKATAKEANVSFINLD 232
PK I L GP GKT +A K V I++D
Sbjct: 10 PKAIFLMGPTASGKTALAIELRKILPVELISVD 42
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 114 SGTSTFNVLLAITTAYEKLKKVGLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHI 173
SG S+ L+A+ T L+ +G+ EL +A NLI ++ + N+ LEH+
Sbjct: 98 SGLSSLQKLVAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 155
Query: 174 KKELNQ 179
N+
Sbjct: 156 DLSSNK 161
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 114 SGTSTFNVLLAITTAYEKLKKVGLDVGNKLNTHELKIAANLIVPEEINGSWKNIAGLEHI 173
SG S+ L+A+ T L+ +G+ EL +A NLI ++ + N+ LEH+
Sbjct: 98 SGLSSLQKLVAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 155
Query: 174 KKELNQ 179
N+
Sbjct: 156 DLSSNK 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,627,437
Number of Sequences: 62578
Number of extensions: 375056
Number of successful extensions: 1447
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1300
Number of HSP's gapped (non-prelim): 119
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)